BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045954
(76 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49118|H2B_CAPAN Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3
Length = 145
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 55/103 (53%), Gaps = 31/103 (30%)
Query: 4 KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------- 43
KPK GKKL K A +K+KK AKKSI+TY IYIFKVLKQV
Sbjct: 30 KPKAGKKLPKDAGRPDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFIND 89
Query: 44 -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 90 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 132
>sp|O65819|H2B3_SOLLC Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1
Length = 137
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 56/103 (54%), Gaps = 31/103 (30%)
Query: 4 KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------- 43
KPK GKKL K A + +K+KK +KK+++TY IYIFKVLKQV
Sbjct: 22 KPKAGKKLPKDAAAGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 81
Query: 44 -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 82 IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 124
>sp|O23629|H2B6_ARATH Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3
Length = 150
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 55/104 (52%), Gaps = 32/104 (30%)
Query: 4 KPKVGKKLSKKA-TSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------- 43
KPK GKKL K+A +K+KK KKS++TY IYIFKVLKQV
Sbjct: 34 KPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 93
Query: 44 ------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 94 DIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 137
>sp|O22582|H2B_GOSHI Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3
Length = 147
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 56/105 (53%), Gaps = 33/105 (31%)
Query: 4 KPKVGKKLSKK--ATSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------ 43
KPK GKKL K+ A + +K+KK KKS++TY IYIFKVLKQV
Sbjct: 30 KPKAGKKLPKEGGAAAGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFI 89
Query: 44 -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 90 NDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 134
>sp|P40283|H2B11_ARATH Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5
Length = 150
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 55/104 (52%), Gaps = 32/104 (30%)
Query: 4 KPKVGKKLSKKA-TSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------- 43
KPK GKKL K+A +K+KK KKS++TY IYIFKVLKQV
Sbjct: 34 KPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 93
Query: 44 ------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 94 DIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 137
>sp|Q9LZT0|H2B7_ARATH Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3
Length = 145
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 55/104 (52%), Gaps = 32/104 (30%)
Query: 4 KPKVGKKLSKKA-TSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------- 43
KPK GKKL K+A +K+KK KKS++TY IYIFKVLKQV
Sbjct: 29 KPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 88
Query: 44 ------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 89 DIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 132
>sp|Q9SI96|H2B3_ARATH Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3
Length = 151
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 52/105 (49%), Gaps = 33/105 (31%)
Query: 4 KPKVGKKLSKKATSSNKEKKCAKK--SIKTYNIYIFKVLKQV------------------ 43
KPK GKKL K+A + EKK + S +TY IYIFKVLKQV
Sbjct: 34 KPKAGKKLPKEAVTGGVEKKKKRVKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFI 93
Query: 44 -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 94 NDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 138
>sp|Q9ZUS0|H2B4_ARATH Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3
Length = 138
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 54/102 (52%), Gaps = 31/102 (30%)
Query: 5 PKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV--------------------- 43
PK KK+SK A S K+KK +KKS++TY IYIFKVLKQV
Sbjct: 25 PKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDI 84
Query: 44 ----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 85 FEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 126
>sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3
Length = 148
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 52/105 (49%), Gaps = 33/105 (31%)
Query: 4 KPKVGKKLSKKATSSNKEKKCAKKS--IKTYNIYIFKVLKQV------------------ 43
KPK GKKL K+ S+ EKK + ++TY IYIFKVLKQV
Sbjct: 31 KPKAGKKLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFI 90
Query: 44 -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 91 NDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 135
>sp|Q1SWQ1|H2B2_MEDTR Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3
Length = 148
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 52/105 (49%), Gaps = 33/105 (31%)
Query: 4 KPKVGKKLSKKATSSNKEKKCAKKS--IKTYNIYIFKVLKQV------------------ 43
KPK GKKL K+ S+ EKK + ++TY IYIFKVLKQV
Sbjct: 31 KPKAGKKLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFI 90
Query: 44 -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 91 NDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDV 135
>sp|P93354|H2B_TOBAC Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3
Length = 146
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 53/104 (50%), Gaps = 32/104 (30%)
Query: 4 KPKVGKKLSKKA-TSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------- 43
KP+ GKKL + A + +K+KK A+ S++TY IYIF+VLK V
Sbjct: 30 KPRAGKKLPRDAGAAGDKKKKRAEMSVETYKIYIFRVLKHVHPDIGISSKAMGIMNSFIN 89
Query: 44 ------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
A Y KKP I+S E T RLVLPGELAKH V
Sbjct: 90 DIFEKLARESSRLAGYNKKPTISSREIQTAVRLVLPGELAKHAV 133
>sp|Q9LQQ4|H2B1_ARATH Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3
Length = 148
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 55/103 (53%), Gaps = 32/103 (31%)
Query: 4 KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------- 43
KPK GKKL K + +K+KK +KK+++TY IYIFKVLKQV
Sbjct: 34 KPKAGKKLPPK-EAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 92
Query: 44 -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 93 IFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 135
>sp|Q41575|H2B6_WHEAT Histone H2B.6 OS=Triticum aestivum GN=TH123 PE=1 SV=3
Length = 121
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 52/103 (50%), Gaps = 33/103 (32%)
Query: 4 KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------- 43
KPKV K++ K ++K+K AKKS +TY IYIFKVLKQ+
Sbjct: 8 KPKVEKRVPGKEGETSKKK--AKKSNETYKIYIFKVLKQIDPNMGISSKSMSIINSIIND 65
Query: 44 -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLV PGELAKH V
Sbjct: 66 IFEKLAGESAKLARYNKKPTITSREIQTAVRLVFPGELAKHAV 108
>sp|O65818|H2B2_SOLLC Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2
Length = 140
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 51/104 (49%), Gaps = 33/104 (31%)
Query: 5 PKVGKKLSKKATSSNKEKKCAKKS--IKTYNIYIFKVLKQV------------------- 43
PK GKKL K++ SS +KK K I+TY IYIFKVLKQV
Sbjct: 24 PKAGKKLPKESGSSGADKKKKKSKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFIN 83
Query: 44 ------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
AR KKP ITS E T RLVLPGELAKH V
Sbjct: 84 DIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAV 127
>sp|O65821|H2B1_SOLLC Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4
Length = 142
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 55/103 (53%), Gaps = 32/103 (31%)
Query: 4 KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------- 43
KPK GKKL K A ++K+KK +KKS++TY IYIFKVLKQV
Sbjct: 28 KPKAGKKLPKDA-GADKKKKKSKKSVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFIND 86
Query: 44 -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
AR KKP ITS E T RLVLPGELAKH V
Sbjct: 87 IFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAV 129
>sp|P05621|H2B2_WHEAT Histone H2B.2 OS=Triticum aestivum PE=1 SV=2
Length = 150
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 49/105 (46%), Gaps = 36/105 (34%)
Query: 7 VGKKLSKKA-----TSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------ 43
GK SK+A T K+ AKK ++TY IYIFKVLKQV
Sbjct: 33 AGKTASKEAGGEGKTRGRKKGSKAKKGVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFI 92
Query: 44 -------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 93 NDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAV 137
>sp|Q6ZBP3|H2B2_ORYSJ Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1
Length = 150
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 41/82 (50%), Gaps = 31/82 (37%)
Query: 25 AKKSIKTYNIYIFKVLKQV-------------------------------FARYKKKPMI 53
AKKS++TY IYIFKVLKQV ARY KKP I
Sbjct: 56 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTI 115
Query: 54 TSWEFHTVGRLVLPGELAKHTV 75
TS E T RLVLPGELAKH V
Sbjct: 116 TSREIQTSVRLVLPGELAKHAV 137
>sp|A2YWI3|H2B2_ORYSI Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1
Length = 150
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 41/82 (50%), Gaps = 31/82 (37%)
Query: 25 AKKSIKTYNIYIFKVLKQV-------------------------------FARYKKKPMI 53
AKKS++TY IYIFKVLKQV ARY KKP I
Sbjct: 56 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTI 115
Query: 54 TSWEFHTVGRLVLPGELAKHTV 75
TS E T RLVLPGELAKH V
Sbjct: 116 TSREIQTSVRLVLPGELAKHAV 137
>sp|Q43216|H2B5_WHEAT Histone H2B.5 OS=Triticum aestivum PE=1 SV=3
Length = 136
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 54/103 (52%), Gaps = 31/103 (30%)
Query: 4 KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQV-------------------- 43
KPK K++ K ++K+KK AKKS++TY IYIFKVLKQV
Sbjct: 21 KPKAEKRVPGKDGGADKKKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFIND 80
Query: 44 -----------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 81 IFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 123
>sp|Q1SU99|H2B3_MEDTR Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3
Length = 138
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 48/93 (51%), Gaps = 31/93 (33%)
Query: 14 KATSSNKEKKCAKKSIKTYNIYIFKVLKQV------------------------------ 43
K SS+K+KK KKS++TY IYIFKVLKQV
Sbjct: 33 KEGSSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESS 92
Query: 44 -FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 93 RLARYNKKPTITSREIQTAVRLVLPGELAKHAV 125
>sp|Q94JE1|H2B5_ORYSJ Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H2B.5 PE=3 SV=1
Length = 155
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 43/85 (50%), Gaps = 31/85 (36%)
Query: 22 KKCAKKSIKTYNIYIFKVLKQVF-------------------------------ARYKKK 50
+K AKKS++TY IYIFKVLKQV ARY KK
Sbjct: 58 RKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKK 117
Query: 51 PMITSWEFHTVGRLVLPGELAKHTV 75
P ITS E T RLVLPGELAKH V
Sbjct: 118 PTITSREIQTSVRLVLPGELAKHAV 142
>sp|A2WKT4|H2B5_ORYSI Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B.5 PE=3 SV=1
Length = 155
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 43/85 (50%), Gaps = 31/85 (36%)
Query: 22 KKCAKKSIKTYNIYIFKVLKQVF-------------------------------ARYKKK 50
+K AKKS++TY IYIFKVLKQV ARY KK
Sbjct: 58 RKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKK 117
Query: 51 PMITSWEFHTVGRLVLPGELAKHTV 75
P ITS E T RLVLPGELAKH V
Sbjct: 118 PTITSREIQTSVRLVLPGELAKHAV 142
>sp|Q9LGI2|H2B10_ORYSJ Histone H2B.10 OS=Oryza sativa subsp. japonica GN=H2B.10 PE=3 SV=1
Length = 153
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 53/109 (48%), Gaps = 37/109 (33%)
Query: 4 KPKVGKKL-SKKATSSNKEKKCAKK-----SIKTYNIYIFKVLKQV-------------- 43
KPK K+L + KA S+ E K A + S++TY IYIFKVLKQV
Sbjct: 32 KPKAEKRLPAGKAEKSSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIM 91
Query: 44 -----------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 92 NSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAV 140
>sp|A2WKS3|H2B10_ORYSI Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2B.10 PE=3 SV=1
Length = 153
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 53/109 (48%), Gaps = 37/109 (33%)
Query: 4 KPKVGKKL-SKKATSSNKEKKCAKK-----SIKTYNIYIFKVLKQV-------------- 43
KPK K+L + KA S+ E K A + S++TY IYIFKVLKQV
Sbjct: 32 KPKAEKRLPAGKAEKSSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIM 91
Query: 44 -----------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 92 NSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAV 140
>sp|A3AGM4|H2B1_ORYSJ Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H2B1 PE=1 SV=1
Length = 152
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSR 120
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 121 EIQTSVRLVLPGELAKHAV 139
>sp|A2XF66|H2B1_ORYSI Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1
Length = 152
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSR 120
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 121 EIQTSVRLVLPGELAKHAV 139
>sp|Q9LGH8|H2B8_ORYSJ Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1
Length = 153
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSR 121
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 122 EIQTAVRLVLPGELAKHAV 140
>sp|A2WKS5|H2B8_ORYSI Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1
Length = 153
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSR 121
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 122 EIQTAVRLVLPGELAKHAV 140
>sp|A2WKT1|H2B6_ORYSI Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B.6 PE=3 SV=1
Length = 153
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSR 121
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 122 EIQTAVRLVLPGELAKHAV 140
>sp|P27807|H2B1_WHEAT Histone H2B.1 OS=Triticum aestivum PE=1 SV=3
Length = 152
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSR 120
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 121 EIQTSVRLVLPGELAKHAV 139
>sp|Q94JJ4|H2B4_ORYSJ Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H2B.4 PE=3 SV=1
Length = 153
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSR 121
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 122 EIQTSVRLVLPGELAKHAV 140
>sp|A2WKP5|H2B4_ORYSI Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B.4 PE=3 SV=1
Length = 153
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSR 121
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 122 EIQTSVRLVLPGELAKHAV 140
>sp|Q94JJ7|H2B3_ORYSJ Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H2B.3 PE=3 SV=1
Length = 153
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSR 121
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 122 EIQTSVRLVLPGELAKHAV 140
>sp|A2WKP3|H2B3_ORYSI Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B.3 PE=3 SV=1
Length = 153
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSR 121
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 122 EIQTSVRLVLPGELAKHAV 140
>sp|Q43261|H2B3_MAIZE Histone H2B.3 OS=Zea mays PE=3 SV=3
Length = 153
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP +TS
Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSR 121
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 122 EIQTSVRLVLPGELAKHAV 140
>sp|Q7GBK0|H2B7_ORYSJ Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H2B.7 PE=2 SV=1
Length = 153
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSR 121
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 122 EIQTSVRLVLPGELAKHAV 140
>sp|A2WKS8|H2B7_ORYSI Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B.7 PE=3 SV=1
Length = 153
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSR 121
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 122 EIQTSVRLVLPGELAKHAV 140
>sp|Q9FFC0|H2B10_ARATH Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3
Length = 145
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
+++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 54 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSR 113
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 114 EIQTAVRLVLPGELAKHAV 132
>sp|Q943L2|H2B11_ORYSJ Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1
Length = 139
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 48 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSR 107
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 108 EIQTSVRLVLPGELAKHAV 126
>sp|A2WWU2|H2B11_ORYSI Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1
Length = 139
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 48 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSR 107
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 108 EIQTSVRLVLPGELAKHAV 126
>sp|Q9LFF6|H2B8_ARATH Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3
Length = 138
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSW 56
+I+TY IYIFKVLKQV ARY KKP ITS
Sbjct: 47 NIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 106
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGEL+KH V
Sbjct: 107 EIQTAVRLVLPGELSKHAV 125
>sp|P30755|H2B1_MAIZE Histone H2B.1 OS=Zea mays PE=2 SV=3
Length = 151
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 37/78 (47%), Gaps = 31/78 (39%)
Query: 29 IKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWE 57
++TY IYIFKVLKQV ARY KKP ITS E
Sbjct: 61 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTITSRE 120
Query: 58 FHTVGRLVLPGELAKHTV 75
T RLVLPGELAKH V
Sbjct: 121 IQTSVRLVLPGELAKHAV 138
>sp|P49120|H2B4_MAIZE Histone H2B.4 OS=Zea mays PE=3 SV=3
Length = 137
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 51/103 (49%), Gaps = 31/103 (30%)
Query: 4 KPKVGKKLSKKATSSNKEKKCAKKSIKTYNIYIFKVLKQVF------------------- 44
KP+ K++ K K KK AKKS++TY IYIFKVLKQV
Sbjct: 22 KPRAEKRVPGKEGGEKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFIND 81
Query: 45 ------------ARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 82 IFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAV 124
>sp|Q43215|H2B4_WHEAT Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3
Length = 135
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 37/78 (47%), Gaps = 31/78 (39%)
Query: 29 IKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWE 57
++TY IYIFKVLKQV ARY KKP ITS E
Sbjct: 45 METYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSRE 104
Query: 58 FHTVGRLVLPGELAKHTV 75
T RLVLPGELAKH V
Sbjct: 105 IQTSVRLVLPGELAKHAV 122
>sp|Q43217|H2B3_WHEAT Histone H2B.3 OS=Triticum aestivum PE=1 SV=3
Length = 138
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 37/78 (47%), Gaps = 31/78 (39%)
Query: 29 IKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWE 57
++TY IYIFKVLKQV ARY KKP ITS E
Sbjct: 48 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSRE 107
Query: 58 FHTVGRLVLPGELAKHTV 75
T RLVLPGELAKH V
Sbjct: 108 IQTSVRLVLPGELAKHAV 125
>sp|Q9LZ45|H2B9_ARATH Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3
Length = 132
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 51/117 (43%), Gaps = 46/117 (39%)
Query: 5 PKVGKKLSKKATSSNKEKKCAKKS---------------IKTYNIYIFKVLKQV------ 43
PK KK ++KA + EKK AK+ +TY IYIFKVLKQV
Sbjct: 3 PKAEKKPAEKAPAPKAEKKIAKEGGTSEIVKKKKKTKKSTETYKIYIFKVLKQVHPDIGI 62
Query: 44 -------------------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
ARY KKP ITS E T RLVLPGELAKH V
Sbjct: 63 SGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAV 119
>sp|Q9LGH4|H2B6_ORYSJ Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1
Length = 153
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQVF-------------------------------ARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSR 121
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 122 EIQTAVRLVLPGELAKHAV 140
>sp|P54348|H2B5_MAIZE Histone H2B.5 OS=Zea mays PE=2 SV=3
Length = 154
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQVF-------------------------------ARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 63 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSR 122
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 123 EIQTSVRLVLPGELAKHAV 141
>sp|P30756|H2B2_MAIZE Histone H2B.2 OS=Zea mays PE=2 SV=3
Length = 150
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 38/79 (48%), Gaps = 31/79 (39%)
Query: 28 SIKTYNIYIFKVLKQVF-------------------------------ARYKKKPMITSW 56
S++TY IYIFKVLKQV ARY KKP ITS
Sbjct: 59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSR 118
Query: 57 EFHTVGRLVLPGELAKHTV 75
E T RLVLPGELAKH V
Sbjct: 119 EIQTSVRLVLPGELAKHAV 137
>sp|P02289|H2BE_STRPU Histone H2B, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2
Length = 124
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 50/110 (45%), Gaps = 35/110 (31%)
Query: 1 MANKPKVGKKLSKKATSSNKE----KKCAKKSIKTYNIYIFKVLKQV------------- 43
MA +V KK SKKA K KK +K ++Y IYI+KVLKQV
Sbjct: 1 MAPTAQVAKKGSKKAVKGTKTAXGGKKRNRKRKESYGIYIYKVLKQVHPDTGISSRAMVI 60
Query: 44 ------------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75
A+Y KK I+S E T RL+LPGELAKH V
Sbjct: 61 MNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAV 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,894,647
Number of Sequences: 539616
Number of extensions: 760365
Number of successful extensions: 2748
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2332
Number of HSP's gapped (non-prelim): 350
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)