Query 045954
Match_columns 76
No_of_seqs 110 out of 342
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_B Histone H2B; histone-fo 100.0 1.1E-30 3.6E-35 179.3 3.9 58 19-76 25-113 (126)
2 2nqb_D Histone H2B; nucleosome 100.0 1.7E-30 5.7E-35 177.7 4.2 58 19-76 22-110 (123)
3 2jss_A Chimera of histone H2B. 99.8 4E-21 1.4E-25 136.4 4.7 49 28-76 1-80 (192)
4 3b0c_W CENP-W, centromere prot 97.8 2.1E-05 7.3E-10 48.1 4.0 23 44-66 49-71 (76)
5 1b67_A Protein (histone HMFA); 96.1 0.0069 2.4E-07 35.5 4.0 32 34-65 34-67 (68)
6 1f1e_A Histone fold protein; a 95.8 0.012 4.1E-07 40.8 4.4 25 44-68 126-150 (154)
7 1tzy_D Histone H4-VI; histone- 95.0 0.033 1.1E-06 35.5 4.2 22 44-65 73-94 (103)
8 2yfw_B Histone H4, H4; cell cy 94.8 0.038 1.3E-06 35.3 4.3 22 44-65 73-94 (103)
9 1ku5_A HPHA, archaeal histon; 94.2 0.056 1.9E-06 31.9 3.7 31 33-63 37-69 (70)
10 2f8n_G Core histone macro-H2A. 92.5 0.15 5.3E-06 33.6 4.0 33 31-63 44-86 (120)
11 1taf_B TFIID TBP associated fa 92.3 0.16 5.5E-06 31.0 3.7 30 35-64 39-70 (70)
12 1id3_C Histone H2A.1; nucleoso 92.0 0.18 6.3E-06 33.8 4.0 32 32-63 48-89 (131)
13 1f66_C Histone H2A.Z; nucleoso 91.7 0.21 7.1E-06 33.4 4.0 33 31-63 50-92 (128)
14 2nqb_C Histone H2A; nucleosome 91.6 0.23 7.7E-06 32.9 4.0 32 32-63 46-87 (123)
15 1id3_B Histone H4; nucleosome 91.5 0.27 9.2E-06 31.5 4.2 22 44-65 72-93 (102)
16 1tzy_A Histone H2A-IV; histone 91.0 0.27 9.4E-06 32.8 4.0 20 44-63 70-89 (129)
17 1taf_A TFIID TBP associated fa 90.6 0.46 1.6E-05 28.7 4.5 33 34-66 33-67 (68)
18 2f8n_K Histone H2A type 1; nuc 90.5 0.31 1.1E-05 33.5 4.0 20 44-63 89-108 (149)
19 2hue_C Histone H4; mini beta s 90.3 0.3 1E-05 30.0 3.4 34 32-65 40-75 (84)
20 2jss_A Chimera of histone H2B. 87.8 0.65 2.2E-05 32.3 4.2 34 30-63 127-170 (192)
21 3b0c_T CENP-T, centromere prot 86.3 0.96 3.3E-05 29.2 4.1 31 34-64 39-71 (111)
22 3nqj_A Histone H3-like centrom 84.3 2 6.8E-05 26.8 4.7 32 33-64 41-74 (82)
23 1n1j_B NF-YC; histone-like PAI 84.1 1.2 4.3E-05 27.7 3.7 21 44-64 64-84 (97)
24 2hue_B Histone H3; mini beta s 83.5 1.8 6.2E-05 26.7 4.2 31 34-64 40-72 (77)
25 1jfi_A Transcription regulator 82.5 0.65 2.2E-05 29.2 1.9 31 33-63 35-75 (98)
26 1n1j_A NF-YB; histone-like PAI 82.1 2.6 8.8E-05 25.8 4.5 31 34-64 42-74 (93)
27 4g92_C HAPE; transcription fac 80.1 2 7E-05 27.8 3.7 20 44-63 86-105 (119)
28 3nqu_A Histone H3-like centrom 78.4 2.9 9.9E-05 28.6 4.2 22 44-65 112-133 (140)
29 2yfv_A Histone H3-like centrom 77.6 2.9 0.0001 26.8 3.9 31 34-64 67-99 (100)
30 2ly8_A Budding yeast chaperone 77.3 4 0.00014 27.1 4.6 32 33-64 78-111 (121)
31 3r45_A Histone H3-like centrom 76.0 3 0.0001 29.0 3.8 21 44-64 128-148 (156)
32 1tzy_C Histone H3; histone-fol 74.6 4.3 0.00015 27.4 4.2 21 44-64 111-131 (136)
33 3v9r_A MHF1, uncharacterized p 72.1 3.5 0.00012 26.0 3.1 33 32-64 41-79 (90)
34 3b0b_B CENP-S, centromere prot 71.2 3.7 0.00013 26.7 3.1 32 33-64 49-86 (107)
35 2byk_B Chrac-14; nucleosome sl 70.0 6.6 0.00023 25.8 4.2 32 34-65 43-76 (128)
36 1f1e_A Histone fold protein; a 68.7 7 0.00024 26.7 4.2 21 44-64 49-69 (154)
37 4dra_A Centromere protein S; D 67.3 4.9 0.00017 26.5 3.1 31 34-64 58-94 (113)
38 3vh5_A CENP-S; histone fold, c 66.6 5.7 0.00019 27.2 3.4 32 33-64 49-86 (140)
39 2l5a_A Histone H3-like centrom 60.5 14 0.00048 27.1 4.8 31 35-65 194-226 (235)
40 3cuq_B Vacuolar protein-sortin 57.9 7.6 0.00026 27.4 2.9 36 31-66 69-127 (218)
41 2byk_A Chrac-16; nucleosome sl 56.2 14 0.00049 24.6 3.9 30 34-63 52-84 (140)
42 3ksy_A SOS-1, SON of sevenless 52.8 14 0.00049 31.0 4.2 45 28-75 19-87 (1049)
43 1u5t_A Appears to BE functiona 52.8 21 0.00071 25.8 4.5 35 32-66 88-142 (233)
44 3ds4_A HIV-1 capsid protein; H 49.3 35 0.0012 20.8 4.7 19 25-43 9-27 (86)
45 1h3o_B Transcription initiatio 46.9 21 0.00072 21.8 3.3 30 34-63 38-69 (76)
46 2jyl_A Capsid protein P24 (Ca) 43.5 50 0.0017 21.0 4.8 19 25-43 28-46 (105)
47 1u5t_B Defective in vacuolar p 36.8 11 0.00038 25.6 0.9 22 44-65 46-72 (169)
48 1jfi_B DR1 protein, transcript 36.1 58 0.002 22.7 4.6 22 44-65 60-81 (179)
49 3fia_A Intersectin-1; EH 1 dom 35.6 35 0.0012 22.0 3.2 28 38-65 66-95 (121)
50 1baj_A GAG polyprotein; capsid 33.3 28 0.00097 21.7 2.4 19 25-43 10-28 (101)
51 2v4x_A JSRV capsid, capsid pro 31.4 50 0.0017 22.3 3.5 17 52-68 47-63 (140)
52 4afj_X Proto-oncogene FRAT1; t 30.0 11 0.00037 19.9 -0.0 12 64-75 10-21 (30)
53 1g8p_A Magnesium-chelatase 38 29.9 72 0.0024 21.6 4.1 27 44-70 301-327 (350)
54 3cuq_A Vacuolar-sorting protei 29.5 54 0.0019 23.6 3.6 34 33-66 70-128 (234)
55 1d6g_A CCK-A-receptor, cholecy 28.6 12 0.00041 21.4 -0.0 13 54-66 35-47 (47)
56 2l5a_A Histone H3-like centrom 27.8 54 0.0019 24.0 3.4 32 33-64 50-83 (235)
57 1qrj_B HTLV-I capsid protein; 27.2 96 0.0033 21.7 4.5 19 25-43 122-140 (199)
58 3ksy_A SOS-1, SON of sevenless 26.6 78 0.0027 26.6 4.5 33 31-63 125-167 (1049)
59 4hkm_A Anthranilate phosphorib 24.2 51 0.0017 24.3 2.7 30 41-70 7-36 (346)
60 4dmi_A Capsid protein; viral p 23.7 31 0.0011 24.5 1.4 19 51-69 5-23 (176)
61 2qpt_A EH domain-containing pr 23.7 49 0.0017 25.7 2.6 27 39-65 492-520 (550)
62 3vlf_B 26S protease regulatory 22.5 95 0.0032 18.0 3.3 24 48-71 54-77 (88)
63 1lv7_A FTSH; alpha/beta domain 21.2 1.4E+02 0.005 19.4 4.3 25 44-68 231-255 (257)
64 2r44_A Uncharacterized protein 20.7 1.2E+02 0.004 20.7 3.9 26 44-69 276-301 (331)
No 1
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=99.96 E-value=1.1e-30 Score=179.27 Aligned_cols=58 Identities=53% Similarity=0.799 Sum_probs=48.1
Q ss_pred cccccccccCcchhHHHHHHHHHHH-------------------------------HHhhcCCCCcchHHHHHHHHhhcc
Q 045954 19 NKEKKCAKKSIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEFHTVGRLVLP 67 (76)
Q Consensus 19 ~~~kkrkkkr~esy~~YiykVLKqV-------------------------------La~~nkr~TitsrEIqtAvrLlLP 67 (76)
++++++++++.|||++||||||||| |++||+|+|||+||||+|||||||
T Consensus 25 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp 104 (126)
T 1tzy_B 25 KGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLP 104 (126)
T ss_dssp ---------CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSC
T ss_pred CCCCCccccccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 3456778889999999999999999 999999999999999999999999
Q ss_pred hhhhhhccC
Q 045954 68 GELAKHTVF 76 (76)
Q Consensus 68 GELaKhAvs 76 (76)
|||+|||||
T Consensus 105 GELaKhAvs 113 (126)
T 1tzy_B 105 GELAKHAVS 113 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999985
No 2
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=99.96 E-value=1.7e-30 Score=177.75 Aligned_cols=58 Identities=53% Similarity=0.798 Sum_probs=49.8
Q ss_pred cccccccccCcchhHHHHHHHHHHH-------------------------------HHhhcCCCCcchHHHHHHHHhhcc
Q 045954 19 NKEKKCAKKSIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEFHTVGRLVLP 67 (76)
Q Consensus 19 ~~~kkrkkkr~esy~~YiykVLKqV-------------------------------La~~nkr~TitsrEIqtAvrLlLP 67 (76)
+++++++++++|||++||||||||| |++||+|+|||+||||+|||||||
T Consensus 22 ~~~~k~~~~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp 101 (123)
T 2nqb_D 22 KTDKKKKRKRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLP 101 (123)
T ss_dssp -------CCCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSC
T ss_pred CCCCCCCccccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCc
Confidence 3456777889999999999999999 999999999999999999999999
Q ss_pred hhhhhhccC
Q 045954 68 GELAKHTVF 76 (76)
Q Consensus 68 GELaKhAvs 76 (76)
|||+|||||
T Consensus 102 GELaKhAvs 110 (123)
T 2nqb_D 102 GELAKHAVS 110 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999985
No 3
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.82 E-value=4e-21 Score=136.37 Aligned_cols=49 Identities=55% Similarity=0.821 Sum_probs=46.9
Q ss_pred CcchhHHHHHHHHHHH-------------------------------HHhhcCCCCcchHHHHHHHHhhcchhhhhhccC
Q 045954 28 SIKTYNIYIFKVLKQV-------------------------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTVF 76 (76)
Q Consensus 28 r~esy~~YiykVLKqV-------------------------------La~~nkr~TitsrEIqtAvrLlLPGELaKhAvs 76 (76)
++|||++||||||||| |++||+++|||+||||+||+|+|||||+|||++
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~ 80 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVS 80 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 4799999999999999 899999999999999999999999999999974
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.81 E-value=2.1e-05 Score=48.06 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=22.0
Q ss_pred HHhhcCCCCcchHHHHHHHHhhc
Q 045954 44 FARYKKKPMITSWEFHTVGRLVL 66 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrLlL 66 (76)
++++++|.||+++||++|++.+|
T Consensus 49 ~a~~~~rKTI~~~dI~~A~~~ll 71 (76)
T 3b0c_W 49 NAFENKSKIIKPEHTIAAAKVIL 71 (76)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999887
No 5
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=96.15 E-value=0.0069 Score=35.52 Aligned_cols=32 Identities=6% Similarity=0.075 Sum_probs=25.4
Q ss_pred HHHHHHHHHH--HHhhcCCCCcchHHHHHHHHhh
Q 045954 34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGRLV 65 (76)
Q Consensus 34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvrLl 65 (76)
.||-.+...- .+.+++|.||+.+|||.|++.|
T Consensus 34 ~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 34 EMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4555555544 8899999999999999999865
No 6
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=95.78 E-value=0.012 Score=40.75 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=24.0
Q ss_pred HHhhcCCCCcchHHHHHHHHhhcch
Q 045954 44 FARYKKKPMITSWEFHTVGRLVLPG 68 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrLlLPG 68 (76)
++++.+|.|||.+||+.|++..||.
T Consensus 126 ~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 126 YADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp HHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred HHHHcCCCccCHHHHHHHHHhcCCc
Confidence 9999999999999999999999994
No 7
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=94.96 E-value=0.033 Score=35.49 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=20.6
Q ss_pred HHhhcCCCCcchHHHHHHHHhh
Q 045954 44 FARYKKKPMITSWEFHTVGRLV 65 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrLl 65 (76)
++++++|.|||.+||+.|++-+
T Consensus 73 ~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 73 YTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHcCCCcCCHHHHHHHHHHc
Confidence 8899999999999999999865
No 8
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=94.83 E-value=0.038 Score=35.27 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=20.6
Q ss_pred HHhhcCCCCcchHHHHHHHHhh
Q 045954 44 FARYKKKPMITSWEFHTVGRLV 65 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrLl 65 (76)
++++++|.|||.+||+.|++-+
T Consensus 73 ~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 73 YTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHcCCCcCcHHHHHHHHHHc
Confidence 8999999999999999999865
No 9
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=94.22 E-value=0.056 Score=31.90 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=23.7
Q ss_pred HHHHHHHHHHH--HHhhcCCCCcchHHHHHHHH
Q 045954 33 NIYIFKVLKQV--FARYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 33 ~~YiykVLKqV--La~~nkr~TitsrEIqtAvr 63 (76)
..|+-.|++.. .+.+.+|.||+.+||+.|++
T Consensus 37 ~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 37 EEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 34444444444 89999999999999999986
No 10
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=92.48 E-value=0.15 Score=33.62 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954 31 TYNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 31 sy~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr 63 (76)
+=.+|+-.||.-+ .++.+++.+||+++||-||+
T Consensus 44 ~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 44 GAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 3456777776644 67889999999999999998
No 11
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=92.35 E-value=0.16 Score=30.98 Aligned_cols=30 Identities=7% Similarity=0.225 Sum_probs=23.2
Q ss_pred HHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954 35 YIFKVLKQV--FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 35 YiykVLKqV--La~~nkr~TitsrEIqtAvrL 64 (76)
++..|+++. ++++.+|.|||..||..|+++
T Consensus 39 r~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 39 KLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 444444444 999999999999999999874
No 12
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=92.03 E-value=0.18 Score=33.75 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954 32 YNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 32 y~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr 63 (76)
=.+|+-.||.-+ .++.+++.+|++++||-||+
T Consensus 48 A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 48 APVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 345666666544 67789999999999999998
No 13
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=91.75 E-value=0.21 Score=33.36 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954 31 TYNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 31 sy~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr 63 (76)
+=.+|+-.||.-+ .++.+++.+||+++||-||+
T Consensus 50 ~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 50 TAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 3457777777765 67789999999999999998
No 14
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=91.56 E-value=0.23 Score=32.93 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954 32 YNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 32 y~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr 63 (76)
=.+|+-.||.-+ .++.+++.+|++++||-||+
T Consensus 46 A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 46 APVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 345555555544 67789999999999999998
No 15
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=91.52 E-value=0.27 Score=31.45 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=20.5
Q ss_pred HHhhcCCCCcchHHHHHHHHhh
Q 045954 44 FARYKKKPMITSWEFHTVGRLV 65 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrLl 65 (76)
++++.+|.|||..||..|++-+
T Consensus 72 ~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 72 YTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHcCCCcCcHHHHHHHHHHc
Confidence 8999999999999999999855
No 16
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=91.00 E-value=0.27 Score=32.81 Aligned_cols=20 Identities=30% Similarity=0.209 Sum_probs=18.6
Q ss_pred HHhhcCCCCcchHHHHHHHH
Q 045954 44 FARYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvr 63 (76)
.++.+++.+|++++||-||+
T Consensus 70 ~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 70 AARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp HHHHTTCSEECHHHHHHHHH
T ss_pred HHHhcCCCeEcHHHHHHHHh
Confidence 67789999999999999998
No 17
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=90.63 E-value=0.46 Score=28.69 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=26.5
Q ss_pred HHHHHHHHHH--HHhhcCCCCcchHHHHHHHHhhc
Q 045954 34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGRLVL 66 (76)
Q Consensus 34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvrLlL 66 (76)
.|+..||+.. ++.+.+|.||+..||+-|+...+
T Consensus 33 ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 33 RYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 4555666655 99999999999999999998643
No 18
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=90.50 E-value=0.31 Score=33.54 Aligned_cols=20 Identities=30% Similarity=0.209 Sum_probs=18.6
Q ss_pred HHhhcCCCCcchHHHHHHHH
Q 045954 44 FARYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvr 63 (76)
.++.+++.+|++++||-||+
T Consensus 89 ~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 89 AARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HHHHTTCSEECHHHHHHHHH
T ss_pred HHHhcCCCcCcHHHHHHHHh
Confidence 67789999999999999998
No 19
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=90.26 E-value=0.3 Score=29.95 Aligned_cols=34 Identities=9% Similarity=0.257 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHH--HHhhcCCCCcchHHHHHHHHhh
Q 045954 32 YNIYIFKVLKQV--FARYKKKPMITSWEFHTVGRLV 65 (76)
Q Consensus 32 y~~YiykVLKqV--La~~nkr~TitsrEIqtAvrLl 65 (76)
...|+-.|+++. ++++.+|.|||..||..|++-+
T Consensus 40 l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 40 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 445555566555 9999999999999999998854
No 20
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=87.77 E-value=0.65 Score=32.33 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954 30 KTYNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 30 esy~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr 63 (76)
++-.+|+-.||.-+ .++.+++.+|++++||-|++
T Consensus 127 ~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 127 SKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 34578888888766 67789999999999999998
No 21
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=86.31 E-value=0.96 Score=29.20 Aligned_cols=31 Identities=6% Similarity=0.159 Sum_probs=23.8
Q ss_pred HHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954 34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvrL 64 (76)
.|+-.|.+.. ++++.+|.||+..||..|++-
T Consensus 39 ~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr 71 (111)
T 3b0c_T 39 RYFKQISSDLEAYSQHAGRKTVEMADVELLMRR 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 3444444443 999999999999999999884
No 22
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=84.34 E-value=2 Score=26.84 Aligned_cols=32 Identities=3% Similarity=0.195 Sum_probs=25.5
Q ss_pred HHHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954 33 NIYIFKVLKQV--FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 33 ~~YiykVLKqV--La~~nkr~TitsrEIqtAvrL 64 (76)
..|+-.+++.. ++.+.+|.||..+|||-|.|+
T Consensus 41 E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ri 74 (82)
T 3nqj_A 41 EAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH
Confidence 34555555544 788999999999999999996
No 23
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=84.10 E-value=1.2 Score=27.70 Aligned_cols=21 Identities=5% Similarity=-0.031 Sum_probs=18.7
Q ss_pred HHhhcCCCCcchHHHHHHHHh
Q 045954 44 FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrL 64 (76)
.++.++|.||+.++|+.||+-
T Consensus 64 ~a~~~krktI~~~di~~Av~~ 84 (97)
T 1n1j_B 64 HTEDNKRRTLQRNDIAMAITK 84 (97)
T ss_dssp HHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHcCCccCCHHHHHHHHhc
Confidence 677899999999999999873
No 24
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=83.47 E-value=1.8 Score=26.69 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=25.3
Q ss_pred HHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954 34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvrL 64 (76)
.|+-.+++.. ++.+.+|.||..+|||-|.|+
T Consensus 40 aylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 40 AYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 4555555554 889999999999999999985
No 25
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=82.54 E-value=0.65 Score=29.18 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=21.5
Q ss_pred HHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954 33 NIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 33 ~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr 63 (76)
..|+-+++.-. .++.+++.||+.++|+.||+
T Consensus 35 ~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 35 PVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 45666666543 66789999999999999986
No 26
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=82.07 E-value=2.6 Score=25.80 Aligned_cols=31 Identities=10% Similarity=0.018 Sum_probs=23.9
Q ss_pred HHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954 34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvrL 64 (76)
.||--+..+- .+...+|.||+..||+.|++-
T Consensus 42 ~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~ 74 (93)
T 1n1j_A 42 EFISFITSEASERCHQEKRKTINGEDILFAMST 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 3444444444 778899999999999999983
No 27
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=80.08 E-value=2 Score=27.79 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=18.5
Q ss_pred HHhhcCCCCcchHHHHHHHH
Q 045954 44 FARYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvr 63 (76)
.++-++|.||+.++|+.||+
T Consensus 86 ~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 86 HAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp HHHHTTCSEECHHHHHHHHT
T ss_pred HHHhcccCccCHHHHHHHHh
Confidence 67889999999999999996
No 28
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=78.40 E-value=2.9 Score=28.55 Aligned_cols=22 Identities=5% Similarity=0.030 Sum_probs=19.9
Q ss_pred HHhhcCCCCcchHHHHHHHHhh
Q 045954 44 FARYKKKPMITSWEFHTVGRLV 65 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrLl 65 (76)
++.+.+|.||..+|||-|.|+-
T Consensus 112 cAiHAkRVTIm~kDiqLArrir 133 (140)
T 3nqu_A 112 LTLHAGRVTLFPKDVQLARRIR 133 (140)
T ss_dssp HHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHcCcccccHHHHHHHHHhc
Confidence 7788999999999999999963
No 29
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=77.65 E-value=2.9 Score=26.83 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=24.6
Q ss_pred HHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954 34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvrL 64 (76)
.|+-.+++.. ++.+.+|.||..+|||-|.|+
T Consensus 67 ayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 67 AYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 3555555544 889999999999999999885
No 30
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=77.28 E-value=4 Score=27.11 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=25.1
Q ss_pred HHHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954 33 NIYIFKVLKQV--FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 33 ~~YiykVLKqV--La~~nkr~TitsrEIqtAvrL 64 (76)
..|+-.|+++. ++.+.+|.|+|..||--|++.
T Consensus 78 ~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 78 KSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 44555555555 899999999999999988874
No 31
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=76.04 E-value=3 Score=29.02 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=19.4
Q ss_pred HHhhcCCCCcchHHHHHHHHh
Q 045954 44 FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrL 64 (76)
++.+.+|.||..+|||-|.|+
T Consensus 128 cAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 128 LTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp HHHHHTCSEECHHHHHHHHHH
T ss_pred HHHHcCcccccHHHHHHHHHH
Confidence 678889999999999999996
No 32
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=74.56 E-value=4.3 Score=27.42 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=19.7
Q ss_pred HHhhcCCCCcchHHHHHHHHh
Q 045954 44 FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrL 64 (76)
++.+.+|.||..+|||-|.++
T Consensus 111 ~A~HAkRvTi~~kDiqLa~ri 131 (136)
T 1tzy_C 111 CAIHAKRVTIMPKDIQLARRI 131 (136)
T ss_dssp HHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHcCCccCcHHhHHHHHHH
Confidence 788999999999999999985
No 33
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=72.09 E-value=3.5 Score=26.00 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHH------HHhhcCCCCcchHHHHHHHHh
Q 045954 32 YNIYIFKVLKQV------FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 32 y~~YiykVLKqV------La~~nkr~TitsrEIqtAvrL 64 (76)
..-++|+-+.++ ++++.+|.||+..||.-++|-
T Consensus 41 L~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 41 LLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 344555555555 999999999999999988873
No 34
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=71.19 E-value=3.7 Score=26.67 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=24.6
Q ss_pred HHHHHHHHHHH------HHhhcCCCCcchHHHHHHHHh
Q 045954 33 NIYIFKVLKQV------FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 33 ~~YiykVLKqV------La~~nkr~TitsrEIqtAvrL 64 (76)
.-++|+...+| ++++.+|.||+..||.-|+|-
T Consensus 49 ~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 49 SEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 33444444444 999999999999999999874
No 35
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=70.01 E-value=6.6 Score=25.76 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=24.2
Q ss_pred HHHHHHHHHH--HHhhcCCCCcchHHHHHHHHhh
Q 045954 34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGRLV 65 (76)
Q Consensus 34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvrLl 65 (76)
.||.-+-.+- ++...+|.||+..||-.|+.-+
T Consensus 43 ~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 43 VFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 3444444444 7788999999999999999754
No 36
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=68.74 E-value=7 Score=26.72 Aligned_cols=21 Identities=5% Similarity=0.049 Sum_probs=19.4
Q ss_pred HHhhcCCCCcchHHHHHHHHh
Q 045954 44 FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrL 64 (76)
++.+.+|.||+..||..|+.-
T Consensus 49 ~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 49 VLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp HHHTTTCSEECHHHHHHHHHH
T ss_pred HHHHcCCCcCCHHHHHHHHHh
Confidence 999999999999999999854
No 37
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=67.34 E-value=4.9 Score=26.53 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=24.0
Q ss_pred HHHHHHHHHH------HHhhcCCCCcchHHHHHHHHh
Q 045954 34 IYIFKVLKQV------FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 34 ~YiykVLKqV------La~~nkr~TitsrEIqtAvrL 64 (76)
-++|+.+.++ ++++.+|.||+..||.-++|-
T Consensus 58 El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 58 ELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 4444444444 899999999999999998873
No 38
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=66.60 E-value=5.7 Score=27.17 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=24.9
Q ss_pred HHHHHHHHHHH------HHhhcCCCCcchHHHHHHHHh
Q 045954 33 NIYIFKVLKQV------FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 33 ~~YiykVLKqV------La~~nkr~TitsrEIqtAvrL 64 (76)
.-++|+.+.++ ++++.+|.||+..||.-++|-
T Consensus 49 ~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 49 SEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 34455555555 999999999999999999873
No 39
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=60.51 E-value=14 Score=27.12 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=23.5
Q ss_pred HHHHHHHHH--HHhhcCCCCcchHHHHHHHHhh
Q 045954 35 YIFKVLKQV--FARYKKKPMITSWEFHTVGRLV 65 (76)
Q Consensus 35 YiykVLKqV--La~~nkr~TitsrEIqtAvrLl 65 (76)
|+-.|+++. ++.+.+|.|+|+.||--|++..
T Consensus 194 fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 194 FLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 333444433 8999999999999999998754
No 40
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=57.92 E-value=7.6 Score=27.37 Aligned_cols=36 Identities=8% Similarity=0.190 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHH--------------------HHhhcCCCC---cchHHHHHHHHhhc
Q 045954 31 TYNIYIFKVLKQV--------------------FARYKKKPM---ITSWEFHTVGRLVL 66 (76)
Q Consensus 31 sy~~YiykVLKqV--------------------La~~nkr~T---itsrEIqtAvrLlL 66 (76)
+.+.|.|.+-.|| .++||+..- ||+.||..|+.++=
T Consensus 69 s~~~f~~ELa~qi~e~c~~~~~~~GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~l~ 127 (218)
T 3cuq_B 69 SGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLE 127 (218)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHTTSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 5688999999999 677776544 89999999999873
No 41
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=56.17 E-value=14 Score=24.58 Aligned_cols=30 Identities=3% Similarity=0.006 Sum_probs=21.9
Q ss_pred HHHHHHHHHH--HH-hhcCCCCcchHHHHHHHH
Q 045954 34 IYIFKVLKQV--FA-RYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 34 ~YiykVLKqV--La-~~nkr~TitsrEIqtAvr 63 (76)
.||-.++.+. .+ .-++|.||+.++|..||.
T Consensus 52 lFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 52 LFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 3444444444 55 669999999999999997
No 42
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=52.80 E-value=14 Score=31.00 Aligned_cols=45 Identities=13% Similarity=0.038 Sum_probs=38.0
Q ss_pred CcchhHHHHHHHHHHH------------------------HHhhcCCCCcchHHHHHHHHhhcchhhhhhcc
Q 045954 28 SIKTYNIYIFKVLKQV------------------------FARYKKKPMITSWEFHTVGRLVLPGELAKHTV 75 (76)
Q Consensus 28 r~esy~~YiykVLKqV------------------------La~~nkr~TitsrEIqtAvrLlLPGELaKhAv 75 (76)
=+.-|-.=++||+.|| ||. ....|..|++..|.-.+|..|.++|+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1049)
T 3ksy_A 19 WRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ---AQPRSASDVEERVQKSFPHPIDKWAI 87 (1049)
T ss_dssp SSSSSHHHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH---TCCCSHHHHHHHHHHHSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc---CCCccHHHHHHHHHHhCCCchHHHHH
Confidence 3456778899999999 553 78889999999999999999999885
No 43
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=52.76 E-value=21 Score=25.78 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHH--------------------HHhhcCCCCcchHHHHHHHHhhc
Q 045954 32 YNIYIFKVLKQV--------------------FARYKKKPMITSWEFHTVGRLVL 66 (76)
Q Consensus 32 y~~YiykVLKqV--------------------La~~nkr~TitsrEIqtAvrLlL 66 (76)
...|.|.+=.|| .+++|+...||..||..|+..+=
T Consensus 88 ~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~ 142 (233)
T 1u5t_A 88 VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLK 142 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhh
Confidence 489999999999 66778888999999999999873
No 44
>3ds4_A HIV-1 capsid protein; HIV, mutant, polyprotein, complex(viral protein/peptide), mainly alpha; 1.12A {Human immunodeficiency virus 1} PDB: 3dph_A 1a43_A 2xt1_A 2buo_A 3lry_A 2kod_A 3ds1_A 3dtj_A 3ds0_A 3ds5_A 3ds2_A 3ds3_A 2jo0_A 2jyg_A 2xxm_A 2xv6_A 2ont_A 1aum_A 1a8o_A 4arg_B ...
Probab=49.30 E-value=35 Score=20.76 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=16.1
Q ss_pred cccCcchhHHHHHHHHHHH
Q 045954 25 AKKSIKTYNIYIFKVLKQV 43 (76)
Q Consensus 25 kkkr~esy~~YiykVLKqV 43 (76)
+...+|.|..|+-|+++.+
T Consensus 9 ~QGpkEpf~dfv~rl~k~l 27 (86)
T 3ds4_A 9 RQGPKEPFRDYVDRFYKTL 27 (86)
T ss_dssp CCCTTSCHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHH
Confidence 4456899999999999988
No 45
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=46.86 E-value=21 Score=21.75 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=22.5
Q ss_pred HHHHHHHHHH--HHhhcCCCCcchHHHHHHHH
Q 045954 34 IYIFKVLKQV--FARYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 34 ~YiykVLKqV--La~~nkr~TitsrEIqtAvr 63 (76)
.||-.|+... ||.+.+..||..+|||-...
T Consensus 38 dFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 38 DFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 4455555444 99999999999999986543
No 46
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A*
Probab=43.50 E-value=50 Score=21.00 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=16.2
Q ss_pred cccCcchhHHHHHHHHHHH
Q 045954 25 AKKSIKTYNIYIFKVLKQV 43 (76)
Q Consensus 25 kkkr~esy~~YiykVLKqV 43 (76)
+...+|.|..|+-|+|+.+
T Consensus 28 kQGpKEPf~dyVdR~~k~l 46 (105)
T 2jyl_A 28 RQGPKEPFRDYVDRFYKTL 46 (105)
T ss_dssp CCCSSSCHHHHHHHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHH
Confidence 4456899999999999988
No 47
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=36.76 E-value=11 Score=25.62 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=17.0
Q ss_pred HHhhcCC-----CCcchHHHHHHHHhh
Q 045954 44 FARYKKK-----PMITSWEFHTVGRLV 65 (76)
Q Consensus 44 La~~nkr-----~TitsrEIqtAvrLl 65 (76)
.+.||+. .-||+.||..|+.++
T Consensus 46 ~~~~nra~R~g~~lISp~Dl~~A~~~l 72 (169)
T 1u5t_B 46 YAMYNKSMRIGTGLISPMEMREACERF 72 (169)
T ss_dssp HHHHHHTTTSSSCCCCHHHHHHHHTTT
T ss_pred HHHHHHhhcCCCCccCHHHHHHHHHHH
Confidence 5566664 378999999999876
No 48
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=36.10 E-value=58 Score=22.69 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=19.6
Q ss_pred HHhhcCCCCcchHHHHHHHHhh
Q 045954 44 FARYKKKPMITSWEFHTVGRLV 65 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrLl 65 (76)
+|...+|.||+..||-.|+.-+
T Consensus 60 ~a~~~~RKTI~~eDVl~Al~~L 81 (179)
T 1jfi_B 60 ICNKSEKKTISPEHVIQALESL 81 (179)
T ss_dssp HHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHcCCCcCCHHHHHHHHHhc
Confidence 7888999999999999998744
No 49
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=35.57 E-value=35 Score=21.99 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.3
Q ss_pred HHHHHH--HHhhcCCCCcchHHHHHHHHhh
Q 045954 38 KVLKQV--FARYKKKPMITSWEFHTVGRLV 65 (76)
Q Consensus 38 kVLKqV--La~~nkr~TitsrEIqtAvrLl 65 (76)
.+|.+| |+..++.-.|+-.|+-.|+.|+
T Consensus 66 ~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li 95 (121)
T 3fia_A 66 PVLAQIWALADMNNDGRMDQVEFSIAMKLI 95 (121)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 456666 7888999999999999999998
No 50
>1baj_A GAG polyprotein; capsid, HIV-1 assembly protein, viral protein; 2.60A {Human immunodeficiency virus 1} SCOP: a.28.3.1
Probab=33.28 E-value=28 Score=21.72 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=16.0
Q ss_pred cccCcchhHHHHHHHHHHH
Q 045954 25 AKKSIKTYNIYIFKVLKQV 43 (76)
Q Consensus 25 kkkr~esy~~YiykVLKqV 43 (76)
+...+|.|..|+-|+|+.+
T Consensus 10 kQGpkepf~d~v~R~~k~l 28 (101)
T 1baj_A 10 RQGPKEPFRDYVDRFYKTL 28 (101)
T ss_dssp CCCSSCCHHHHHHHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHH
Confidence 4456899999999999977
No 51
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=31.39 E-value=50 Score=22.32 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=15.5
Q ss_pred CcchHHHHHHHHhhcch
Q 045954 52 MITSWEFHTVGRLVLPG 68 (76)
Q Consensus 52 TitsrEIqtAvrLlLPG 68 (76)
-+|+.|.++-+|.+|+|
T Consensus 47 ~LtP~DW~~lara~Ls~ 63 (140)
T 2v4x_A 47 ALPPNDWKQTARACLSG 63 (140)
T ss_dssp CCCHHHHHHHHHHHSCH
T ss_pred CCChHHHHHHHHHHcCc
Confidence 49999999999999987
No 52
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=30.01 E-value=11 Score=19.88 Aligned_cols=12 Identities=58% Similarity=0.836 Sum_probs=8.1
Q ss_pred hhcchhhhhhcc
Q 045954 64 LVLPGELAKHTV 75 (76)
Q Consensus 64 LlLPGELaKhAv 75 (76)
|+++|-|.|.||
T Consensus 10 Ll~~G~likeAv 21 (30)
T 4afj_X 10 LVLSGNLIKEAV 21 (30)
T ss_dssp HHHHTCHHHHHH
T ss_pred HHHccchHHHHH
Confidence 567777777665
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=29.89 E-value=72 Score=21.61 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.5
Q ss_pred HHhhcCCCCcchHHHHHHHHhhcchhh
Q 045954 44 FARYKKKPMITSWEFHTVGRLVLPGEL 70 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrLlLPGEL 70 (76)
++....+.+|+..+|..|+.++|+.-+
T Consensus 301 ~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 301 LAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp HHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred HHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 556678889999999999999987654
No 54
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=29.48 E-value=54 Score=23.61 Aligned_cols=34 Identities=6% Similarity=0.037 Sum_probs=26.8
Q ss_pred HHHHHHHHHHH--------------------HHhhcCC-----CCcchHHHHHHHHhhc
Q 045954 33 NIYIFKVLKQV--------------------FARYKKK-----PMITSWEFHTVGRLVL 66 (76)
Q Consensus 33 ~~YiykVLKqV--------------------La~~nkr-----~TitsrEIqtAvrLlL 66 (76)
..|.|.+=.|| .+++|+. ..||..||..|+..+=
T Consensus 70 gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~ 128 (234)
T 3cuq_A 70 GDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLK 128 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHG
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHH
Confidence 68999999998 4445443 6899999999999873
No 55
>1d6g_A CCK-A-receptor, cholecystokinin type A receptor; alpha-helix, beta-sheet, complex GPCR-ligand, hormone/growth factor complex; NMR {Synthetic} SCOP: g.33.1.1
Probab=28.55 E-value=12 Score=21.40 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=11.1
Q ss_pred chHHHHHHHHhhc
Q 045954 54 TSWEFHTVGRLVL 66 (76)
Q Consensus 54 tsrEIqtAvrLlL 66 (76)
.++|.|-|||++|
T Consensus 35 ~~kE~~~aVrIlL 47 (47)
T 1d6g_A 35 PSKEWQPAQVILL 47 (47)
T ss_dssp SCSSHHHHHHSCC
T ss_pred CchhhChhheeeC
Confidence 6689999999876
No 56
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=27.75 E-value=54 Score=23.97 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=25.1
Q ss_pred HHHHHHHHHHH--HHhhcCCCCcchHHHHHHHHh
Q 045954 33 NIYIFKVLKQV--FARYKKKPMITSWEFHTVGRL 64 (76)
Q Consensus 33 ~~YiykVLKqV--La~~nkr~TitsrEIqtAvrL 64 (76)
..|+-.++... .+.+.+|-||.++|||-|.|+
T Consensus 50 EayLV~LFEd~nLcaiHAkRVTim~kDiqLarri 83 (235)
T 2l5a_A 50 EAYLVGLLEHTNLLALHAKRITIMKKDMQLARRI 83 (235)
T ss_dssp HHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTS
T ss_pred HHHHHHHHhhhHHHHhcccccccchhhHHHHHHH
Confidence 34555555544 778999999999999999985
No 57
>1qrj_B HTLV-I capsid protein; retrovirus, two-domain protein, alpha helical protein, heteronuclear spectroscopy; NMR {Human t-cell lymphotrophic virus TYPE1} SCOP: a.28.3.1 a.73.1.1
Probab=27.24 E-value=96 Score=21.67 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=16.6
Q ss_pred cccCcchhHHHHHHHHHHH
Q 045954 25 AKKSIKTYNIYIFKVLKQV 43 (76)
Q Consensus 25 kkkr~esy~~YiykVLKqV 43 (76)
+...+|.|..|+-|+++.+
T Consensus 122 kQGpkEPf~dfVdR~~k~l 140 (199)
T 1qrj_B 122 LQGLEEPYHAFVERLNIAL 140 (199)
T ss_dssp CBCTTSCHHHHHHHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHH
Confidence 5556899999999999988
No 58
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=26.63 E-value=78 Score=26.62 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHH----------HHhhcCCCCcchHHHHHHHH
Q 045954 31 TYNIYIFKVLKQV----------FARYKKKPMITSWEFHTVGR 63 (76)
Q Consensus 31 sy~~YiykVLKqV----------La~~nkr~TitsrEIqtAvr 63 (76)
+=.+|+--||.=+ -++.+++..||+|+||-|++
T Consensus 125 ~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 125 QVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 3467888877765 56779999999999999986
No 59
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=24.24 E-value=51 Score=24.29 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHhhcchhh
Q 045954 41 KQVFARYKKKPMITSWEFHTVGRLVLPGEL 70 (76)
Q Consensus 41 KqVLa~~nkr~TitsrEIqtAvrLlLPGEL 70 (76)
+|+|.+.-....||..|++.+++.++-|+.
T Consensus 7 ~e~l~~~~~~~~Lt~eEa~~~~~~il~G~~ 36 (346)
T 4hkm_A 7 QQALQRTIEHREIFHDEMVDLMRQIMRGEV 36 (346)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHCCCC
Confidence 344555556689999999999999998875
No 60
>4dmi_A Capsid protein; viral protein; 1.50A {Unidentified}
Probab=23.75 E-value=31 Score=24.46 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=17.0
Q ss_pred CCcchHHHHHHHHhhcchh
Q 045954 51 PMITSWEFHTVGRLVLPGE 69 (76)
Q Consensus 51 ~TitsrEIqtAvrLlLPGE 69 (76)
-||+|+.||+=+|-|||-+
T Consensus 5 ftv~SEalq~kirdLLPSQ 23 (176)
T 4dmi_A 5 FRIDSESIRDKLNTLLPSQ 23 (176)
T ss_dssp EECCCHHHHHHHHHHSCBS
T ss_pred EEecHHHHHHHHHhhCccc
Confidence 3789999999999999965
No 61
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=23.73 E-value=49 Score=25.65 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=23.4
Q ss_pred HHHHH--HHhhcCCCCcchHHHHHHHHhh
Q 045954 39 VLKQV--FARYKKKPMITSWEFHTVGRLV 65 (76)
Q Consensus 39 VLKqV--La~~nkr~TitsrEIqtAvrLl 65 (76)
+|.|| |+..++.-.|+..|+--|+.|+
T Consensus 492 ~L~~IW~l~D~~~~g~L~~~eF~~am~Li 520 (550)
T 2qpt_A 492 VLGRIWKLSDVDRDGMLDDEEFALASHLI 520 (550)
T ss_dssp HHHHHHHHHCSSCSSSEEHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCCCcCCHHHHHHHHHHH
Confidence 34455 8999999999999999999998
No 62
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=22.49 E-value=95 Score=18.03 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=17.7
Q ss_pred cCCCCcchHHHHHHHHhhcchhhh
Q 045954 48 KKKPMITSWEFHTVGRLVLPGELA 71 (76)
Q Consensus 48 nkr~TitsrEIqtAvrLlLPGELa 71 (76)
.....||..++..|+.-+.||-..
T Consensus 54 ~~~~~i~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 54 ARRKVATEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp HSCSSBCHHHHHHHHHHHTC----
T ss_pred hccccCCHHHHHHHHHHHhcCccc
Confidence 456789999999999999998643
No 63
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=21.18 E-value=1.4e+02 Score=19.43 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=18.8
Q ss_pred HHhhcCCCCcchHHHHHHHHhhcch
Q 045954 44 FARYKKKPMITSWEFHTVGRLVLPG 68 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrLlLPG 68 (76)
++....+..||..++..|+..++-|
T Consensus 231 ~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 231 FAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHhCCCcccHHHHHHHHHHHhcC
Confidence 4445667789999999998877654
No 64
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=20.68 E-value=1.2e+02 Score=20.70 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=22.6
Q ss_pred HHhhcCCCCcchHHHHHHHHhhcchh
Q 045954 44 FARYKKKPMITSWEFHTVGRLVLPGE 69 (76)
Q Consensus 44 La~~nkr~TitsrEIqtAvrLlLPGE 69 (76)
++..+.+..++..+|+.++..+|...
T Consensus 276 ~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 276 MAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred HHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 67788999999999999999988544
Done!