BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045955
         (139 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KZ4|A Chain A, Crystal Structure Of The Rotavirus Double Layered
          Particle
 pdb|3KZ4|B Chain B, Crystal Structure Of The Rotavirus Double Layered
          Particle
 pdb|4F5X|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
          Rotavirus Particles
 pdb|4F5X|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
          Rotavirus Particles
          Length = 880

 Score = 26.2 bits (56), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 3  SHDQSYRAGEVKGQTEERTNQTMENVRDKAQAAKDRTYEAAQQ 45
          S ++   A EVK  T+E + Q +E ++ K +  K+  YE  Q+
Sbjct: 51 SQEEIKIADEVKKSTKEESKQLLEVLKTKEEHQKEIQYEILQK 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.301    0.113    0.287 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,505,553
Number of Sequences: 62578
Number of extensions: 57682
Number of successful extensions: 107
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 4
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 46 (22.3 bits)