Query 045955
Match_columns 139
No_of_seqs 122 out of 222
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x43_S Sherp; membrane protein 97.8 1.9E-05 6.4E-10 52.4 3.6 53 11-63 3-55 (67)
2 2x43_S Sherp; membrane protein 97.2 0.00057 1.9E-08 45.3 5.0 52 23-74 4-55 (67)
3 2a01_A Apolipoprotein A-I; fou 84.3 4.8 0.00016 31.6 8.1 47 71-117 195-241 (243)
4 1ryk_A Protein YJBJ; alpha pro 84.0 0.25 8.4E-06 32.3 0.4 48 1-48 1-52 (69)
5 3s84_A Apolipoprotein A-IV; fo 72.8 35 0.0012 27.3 13.5 23 94-116 174-196 (273)
6 1yww_A Hypothetical protein PA 70.0 0.46 1.6E-05 32.6 -1.5 23 4-26 24-46 (85)
7 2a01_A Apolipoprotein A-I; fou 70.0 20 0.00068 28.0 7.8 7 65-71 200-206 (243)
8 2l9q_A 12 kDa heat shock prote 54.2 16 0.00054 26.2 4.1 28 96-123 80-107 (109)
9 2l9q_A 12 kDa heat shock prote 41.5 55 0.0019 23.3 5.2 19 60-78 77-95 (109)
10 2kfe_A Meucin-24; alpha-helix, 32.1 31 0.0011 18.7 2.0 20 21-40 3-22 (26)
No 1
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=97.77 E-value=1.9e-05 Score=52.43 Aligned_cols=53 Identities=28% Similarity=0.403 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045955 11 GEVKGQTEERTNQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAG 63 (139)
Q Consensus 11 ge~k~~aqeKa~e~~~~a~ekA~~Akdka~e~a~~akdka~e~a~~akeka~e 63 (139)
.|+++++.+++.|+.+++-+++++.||-+..++-.++|++.++++..|+|.++
T Consensus 3 qE~kDk~~~~A~E~kd~~~dK~qElKdga~~KAaelkD~~~~~~E~iKDKisg 55 (67)
T 2x43_S 3 QETRDQMKNAAAEAKDNVHDKIQELKDDVGNKAAEVRDAVSSTVESIKDKLSG 55 (67)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHHHHHHHhcc
Confidence 47788888888888888888888888877777777787777777777777653
No 2
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=97.21 E-value=0.00057 Score=45.29 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHH
Q 045955 23 QTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAGTAEAGKQKTQE 74 (139)
Q Consensus 23 e~~~~a~ekA~~Akdka~e~a~~akdka~e~a~~akeka~ea~~aakeKas~ 74 (139)
|+.|++.++|.+.++++.+.+++.||-+...+-.+++++.++++..|+|.++
T Consensus 4 E~kDk~~~~A~E~kd~~~dK~qElKdga~~KAaelkD~~~~~~E~iKDKisg 55 (67)
T 2x43_S 4 ETRDQMKNAAAEAKDNVHDKIQELKDDVGNKAAEVRDAVSSTVESIKDKLSG 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHHHHHHHhcc
Confidence 5666677777777777777777777666666666666666666666655544
No 3
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=84.32 E-value=4.8 Score=31.61 Aligned_cols=47 Identities=26% Similarity=0.132 Sum_probs=27.8
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 045955 71 KTQETGQATGEKAEAAKEKTGGILKQTEEKVKDAAQSAADAVKHTFG 117 (139)
Q Consensus 71 Kas~aa~~akekA~e~kdkt~~~~qq~gE~vK~~A~~A~davK~t~g 117 (139)
+....++..+.+...--+....-|.-..+.++......++.++.++.
T Consensus 195 kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~~~~e~~~~~~~ 241 (243)
T 2a01_A 195 KATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLN 241 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444555555444334444444666677777777777777777663
No 4
>1ryk_A Protein YJBJ; alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: a.60.11.1
Probab=84.00 E-value=0.25 Score=32.30 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=27.7
Q ss_pred CcchhhhhHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 045955 1 MASHDQSYRAGEVKGQTEERTNQTMEN----VRDKAQAAKDRTYEAAQQAKD 48 (139)
Q Consensus 1 mas~~~s~~Age~k~~aqeKa~e~~~~----a~ekA~~Akdka~e~a~~akd 48 (139)
|..+++.-+.-+++|.++|..|.+.+. +.-++.++..++++....++|
T Consensus 1 M~~dki~G~~~q~kGk~Ke~~G~lTgd~~~~~eG~~~q~~Gk~q~~~g~~kd 52 (69)
T 1ryk_A 1 MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYQKD 52 (69)
T ss_dssp CCCCCSSSHHHHHHHHHHHHTCSSCHHHHHHHTTCHHHHHHHHHHHTCCCHH
T ss_pred CCHHHHhhhHHHHHhHHHHHHHHhcCCHhHHHcchHHHHhHHHHHHHHHHHH
Confidence 555666667778888888887777663 333334444444444433333
No 5
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=72.83 E-value=35 Score=27.33 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhh
Q 045955 94 LKQTEEKVKDAAQSAADAVKHTF 116 (139)
Q Consensus 94 ~qq~gE~vK~~A~~A~davK~t~ 116 (139)
+....|..+....-..+.++..|
T Consensus 174 l~~~~eeLr~~L~p~ae~lr~~l 196 (273)
T 3s84_A 174 ISASAEELRQRLAPLAEDVRGNL 196 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 6
>1yww_A Hypothetical protein PA4738; structural genomics, YJBJ, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa}
Probab=70.02 E-value=0.46 Score=32.61 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=13.0
Q ss_pred hhhhhHhhhhhHHHHHHHHHHHH
Q 045955 4 HDQSYRAGEVKGQTEERTNQTME 26 (139)
Q Consensus 4 ~~~s~~Age~k~~aqeKa~e~~~ 26 (139)
+++.-+.-+++|.++|.+|.+.+
T Consensus 24 dkieG~~~q~kGk~KE~~GklTg 46 (85)
T 1yww_A 24 DVIKGKWKQLTGKIKERWGDLTD 46 (85)
T ss_dssp CCTTTSHHHHHHHHHHHCTTSCH
T ss_pred HHHHhHHHHHHHHHHHHHHHhcC
Confidence 34444556666666666655544
No 7
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=70.00 E-value=20 Score=27.99 Aligned_cols=7 Identities=14% Similarity=0.012 Sum_probs=2.5
Q ss_pred HHHHHhH
Q 045955 65 AEAGKQK 71 (139)
Q Consensus 65 ~~aakeK 71 (139)
.+..+++
T Consensus 200 ~e~lr~~ 206 (243)
T 2a01_A 200 LSTLSEK 206 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 8
>2l9q_A 12 kDa heat shock protein; structural genomics, PSI-2, protein structure initiative, CE eukaryotic structural genomics, CESG; NMR {Saccharomyces cerevisiae} PDB: 2ljl_A
Probab=54.18 E-value=16 Score=26.19 Aligned_cols=28 Identities=11% Similarity=-0.069 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 045955 96 QTEEKVKDAAQSAADAVKHTFGFGGAGE 123 (139)
Q Consensus 96 q~gE~vK~~A~~A~davK~t~g~~~~~~ 123 (139)
.+-+..+..+.+|.++|...+..+....
T Consensus 80 ~a~g~~ke~l~~AaeyVS~~~~G~~~g~ 107 (109)
T 2l9q_A 80 DYMGAAKSKLNDAVEYVSGRVHGEEDPT 107 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHhhHHHHHHHHHHHHhhccCCCCCC
Confidence 3445566777778888888887766554
No 9
>2l9q_A 12 kDa heat shock protein; structural genomics, PSI-2, protein structure initiative, CE eukaryotic structural genomics, CESG; NMR {Saccharomyces cerevisiae} PDB: 2ljl_A
Probab=41.51 E-value=55 Score=23.35 Aligned_cols=19 Identities=21% Similarity=0.150 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhHHHHHhHH
Q 045955 60 RAAGTAEAGKQKTQETGQA 78 (139)
Q Consensus 60 ka~ea~~aakeKas~aa~~ 78 (139)
++.++.+.++++..++++|
T Consensus 77 kak~a~g~~ke~l~~Aaey 95 (109)
T 2l9q_A 77 QARDYMGAAKSKLNDAVEY 95 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 3333333333333333333
No 10
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=32.09 E-value=31 Score=18.74 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045955 21 TNQTMENVRDKAQAAKDRTY 40 (139)
Q Consensus 21 a~e~~~~a~ekA~~Akdka~ 40 (139)
..|.|++.+++-.+++|++.
T Consensus 3 gkei~~kiK~kl~~akdK~k 22 (26)
T 2kfe_A 3 GREFMSNLKEKLSGVKEKMK 22 (26)
T ss_dssp THHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 35778888888888877653
Done!