Query 045955
Match_columns 139
No_of_seqs 122 out of 222
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 12:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045955.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045955hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ryka_ a.60.11.1 (A:) Hypothe 54.9 1.4 0.00011 27.2 0.4 27 1-27 1-27 (69)
2 d1gs9a_ a.24.1.1 (A:) Apolipop 50.7 30 0.0022 22.8 7.5 18 100-117 122-139 (144)
3 d1gs9a_ a.24.1.1 (A:) Apolipop 32.2 61 0.0045 21.1 7.8 54 61-114 72-125 (144)
4 d1eq1a_ a.63.1.1 (A:) Apolipop 7.6 3.3E+02 0.024 18.4 7.3 48 68-115 79-126 (166)
5 d1ydla1 d.295.1.1 (A:6-71) Gen 3.9 1.4E+02 0.01 17.6 0.8 8 131-138 56-63 (66)
6 d1wlma1 a.39.1.11 (A:8-145) Pr 2.4 7.7E+02 0.056 15.7 3.7 6 132-137 127-132 (138)
7 d1i6la_ c.26.1.1 (A:) Tryptoph 1.8 1E+03 0.074 16.4 3.9 27 92-118 298-324 (326)
8 d1aoca_ g.17.1.5 (A:) Coagulog 1.8 8E+02 0.058 16.2 2.8 23 99-121 24-46 (175)
9 d1we3a1 a.129.1.1 (A:3-138,A:4 1.5 9.7E+02 0.071 15.8 3.0 26 95-120 8-33 (255)
10 d1v1oa1 b.40.2.2 (A:18-108) Ex 1.2 3.3E+02 0.024 16.9 -0.4 11 129-139 52-62 (91)
No 1
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=54.88 E-value=1.4 Score=27.24 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=19.1
Q ss_pred CcchhhhhHhhhhhHHHHHHHHHHHHH
Q 045955 1 MASHDQSYRAGEVKGQTEERTNQTMEN 27 (139)
Q Consensus 1 mas~~~s~~Age~k~~aqeKa~e~~~~ 27 (139)
|-++++.-..-+++|+.++..|.+.+-
T Consensus 1 Mn~d~i~G~~~q~kGkvke~~G~lT~d 27 (69)
T d1ryka_ 1 MNKDEAGGNWKQFKGKVKEQWGKLTDD 27 (69)
T ss_dssp CCCCCSSSHHHHHHHHHHHHTCSSCHH
T ss_pred CCHHHHhhHHHHHhhHHHHHHhhccCC
Confidence 556666667778888888887766543
No 2
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=50.67 E-value=30 Score=22.79 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 045955 100 KVKDAAQSAADAVKHTFG 117 (139)
Q Consensus 100 ~vK~~A~~A~davK~t~g 117 (139)
.++..+..-.+-++..|.
T Consensus 122 el~~~l~~~~eel~~kL~ 139 (144)
T d1gs9a_ 122 KLRKRLLRDADDLQKRLA 139 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333444444444444443
No 3
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=32.21 E-value=61 Score=21.07 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=25.2
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 045955 61 AAGTAEAGKQKTQETGQATGEKAEAAKEKTGGILKQTEEKVKDAAQSAADAVKH 114 (139)
Q Consensus 61 a~ea~~aakeKas~aa~~akekA~e~kdkt~~~~qq~gE~vK~~A~~A~davK~ 114 (139)
..+-.+..+++...-.+-++++...-.+.....++...|.++..+..-.+-++.
T Consensus 72 l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~ 125 (144)
T d1gs9a_ 72 LSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRK 125 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444455555555555555444444443
No 4
>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}
Probab=7.57 E-value=3.3e+02 Score=18.39 Aligned_cols=48 Identities=10% Similarity=0.208 Sum_probs=24.6
Q ss_pred HHhHHHHHhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhh
Q 045955 68 GKQKTQETGQATGEKAEAAKEKTGGILKQTEEKVKDAAQSAADAVKHT 115 (139)
Q Consensus 68 akeKas~aa~~akekA~e~kdkt~~~~qq~gE~vK~~A~~A~davK~t 115 (139)
+......+++...+-..+-+..+..+..++-..+..++++..+-.+++
T Consensus 79 a~~nle~~Aeelrk~~e~ikq~a~d~~~~~~~~~~~~vqe~~~~ake~ 126 (166)
T d1eq1a_ 79 ARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEV 126 (166)
T ss_dssp HHHHHHHHHHGGGGCSHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555555566666555555544
No 5
>d1ydla1 d.295.1.1 (A:6-71) General transcription factor IIH polypeptide 5, TFB5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.94 E-value=1.4e+02 Score=17.59 Aligned_cols=8 Identities=25% Similarity=0.559 Sum_probs=3.8
Q ss_pred CCCccccC
Q 045955 131 RDRNTYTK 138 (139)
Q Consensus 131 ~d~~~~~~ 138 (139)
.|.|+|+|
T Consensus 56 ~d~nsy~~ 63 (66)
T d1ydla1 56 MDQNAFSL 63 (66)
T ss_dssp SCCCTTTT
T ss_pred HHhcCCCc
Confidence 34555543
No 6
>d1wlma1 a.39.1.11 (A:8-145) Protein cgi-38 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.42 E-value=7.7e+02 Score=15.67 Aligned_cols=6 Identities=50% Similarity=0.877 Sum_probs=5.4
Q ss_pred CCcccc
Q 045955 132 DRNTYT 137 (139)
Q Consensus 132 d~~~~~ 137 (139)
|+|+|+
T Consensus 127 D~s~YT 132 (138)
T d1wlma1 127 DTSKYT 132 (138)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 899997
No 7
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=1.85 E-value=1e+03 Score=16.43 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=16.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhc
Q 045955 92 GILKQTEEKVKDAAQSAADAVKHTFGF 118 (139)
Q Consensus 92 ~~~qq~gE~vK~~A~~A~davK~t~g~ 118 (139)
.+|.+=.+.+...|+.+.+-|++.+|.
T Consensus 298 ~iL~~Ga~kAr~~A~~tl~~Vr~~~Gl 324 (326)
T d1i6la_ 298 RVLDEGAEKANRVASEMVRKMEQAMGL 324 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345555555666666666666666665
No 8
>d1aoca_ g.17.1.5 (A:) Coagulogen {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=1.77 E-value=8e+02 Score=16.21 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCC
Q 045955 99 EKVKDAAQSAADAVKHTFGFGGA 121 (139)
Q Consensus 99 E~vK~~A~~A~davK~t~g~~~~ 121 (139)
..+|++...|.++|-+.-+.++.
T Consensus 24 ~e~kdkie~av~ai~~~~~isgr 46 (175)
T d1aoca_ 24 TEIKDKIEKAVEAVAQESGVSGR 46 (175)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSTT
T ss_pred hhhHHHHHHHHHHhhcccccccc
Confidence 34677788888888887776654
No 9
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}
Probab=1.49 E-value=9.7e+02 Score=15.79 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCC
Q 045955 95 KQTEEKVKDAAQSAADAVKHTFGFGG 120 (139)
Q Consensus 95 qq~gE~vK~~A~~A~davK~t~g~~~ 120 (139)
++.-......+.--.++|+-|||..|
T Consensus 8 ~~ar~~l~~gv~~la~av~~tlGP~G 33 (255)
T d1we3a1 8 EAARRALERGVNAVANAVKVTLGPRG 33 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSTTC
T ss_pred HHHHHHHHHhHHHHHHHHhcccCCCc
Confidence 34445556666667899999998655
No 10
>d1v1oa1 b.40.2.2 (A:18-108) Exotoxin 1 (SET1, Superantigen-like protein 7) {Staphylococcus aureus [TaxId: 1280]}
Probab=1.20 E-value=3.3e+02 Score=16.90 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=7.9
Q ss_pred cCCCCccccCC
Q 045955 129 GDRDRNTYTKG 139 (139)
Q Consensus 129 ~g~d~~~~~~~ 139 (139)
.|+|++.|+.|
T Consensus 52 ~GkDk~kykeg 62 (91)
T d1v1oa1 52 LGKDKEQYKEG 62 (91)
T ss_dssp CSTHHHHTTTC
T ss_pred ecCcHHHhcCC
Confidence 77887777654
Done!