BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045956
(1150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/409 (33%), Positives = 219/409 (53%), Gaps = 39/409 (9%)
Query: 748 FPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSR-- 805
F F+++ + FR+ + K D+ E+ + R +I E+ +R++ S+
Sbjct: 5 FEFKQKYDYFRKKL-------KKPADIPN----RFEMKLHRNNIFEESYRRIMSVKRPDV 53
Query: 806 LKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAA 865
LK+ + + F SE GLDYGG+++E+ +SK F P YGLF ++T + L N
Sbjct: 54 LKARLWIEFESE-----KGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPN 108
Query: 866 ARYL-ENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYR 924
+ E+ + F F+GRV G A++ G LLD F F + +LG+ L+++ ++D E Y
Sbjct: 109 SGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYN 168
Query: 925 NLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKL 984
+L ++ + D EL L F + EE+FG+ + ++LKP G + VTNENK +Y+ + ++
Sbjct: 169 SLKWI--LENDPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRF 226
Query: 985 NRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSE 1044
++ NAF G T+L+ +K+F+ +E +LL G D+DV+D R+++ Y GY
Sbjct: 227 VNRVQKQMNAFLEGFTELLPIDLIKIFDENEL-ELLMCGLGDVDVNDWRQHSIYKNGYCP 285
Query: 1045 GSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSS 1099
I+ FW+ V + ++R LL+FVT SR P+ GF L S FTI +
Sbjct: 286 NHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQ------ 339
Query: 1100 LWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFE 1148
W E+LP A T +N L LP Y+ L+ KLL A+ + GFE
Sbjct: 340 -WG-----SPEKLPRAHTAFNRLDLPPYETFEDLREKLLMAVENAQGFE 382
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/409 (33%), Positives = 219/409 (53%), Gaps = 39/409 (9%)
Query: 748 FPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSR-- 805
F F+++ + FR+ + K D+ E+ + R +I E+ +R++ S+
Sbjct: 5 FEFKQKYDYFRKKL-------KKPADIPN----RFEMKLHRNNIFEESYRRIMSVKRPDV 53
Query: 806 LKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAA 865
LK+ + + F SE GLDYGG+++E+ +SK F P YGLF ++T + L N
Sbjct: 54 LKARLWIEFESE-----KGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPN 108
Query: 866 ARYL-ENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYR 924
+ E+ + F F+GRV G A++ G LLD F F + +LG+ L+++ ++D E Y
Sbjct: 109 SGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYN 168
Query: 925 NLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKL 984
+L ++ + D EL L F + EE+FG+ + ++LKP G + VTNENK +Y+ + ++
Sbjct: 169 SLKWI--LENDPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRF 226
Query: 985 NRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSE 1044
++ NAF G T+L+ +K+F+ +E +LL G D+DV+D R+++ Y GY
Sbjct: 227 VNRVQKQMNAFLEGFTELLPIDLIKIFDENEL-ELLMCGLGDVDVNDWRQHSIYKNGYCP 285
Query: 1045 GSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSS 1099
I+ FW+ V + ++R LL+FVT SR P+ GF L S FTI +
Sbjct: 286 NHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQ------ 339
Query: 1100 LWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFE 1148
W E+LP A T +N L LP Y+ L+ KLL A+ + GFE
Sbjct: 340 -WG-----SPEKLPRAHTSFNRLDLPPYETFEDLREKLLMAVENAQGFE 382
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 129/371 (34%), Positives = 200/371 (53%), Gaps = 18/371 (4%)
Query: 781 SIEIVVRRGHIVEDGFRQLNSL--GSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDI 838
E+ +RR ++ED +R++ + LK+ + + F E GLDYGG+++E+ I
Sbjct: 28 KFEMKLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGE-----KGLDYGGVAREWFFLI 82
Query: 839 SKSAFAPEYGLFSQTSTSDRLLIPNAAARYL-ENGIQMFEFLGRVVGKALYEGILLDYAF 897
SK F P YGLF ++T + L N + E+ + F+F+GRV G A+Y G LLD F
Sbjct: 83 SKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFF 142
Query: 898 SHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIE 957
F + +L + L ++ ++D E Y +L ++ + D EL L F + EE FG+ H E
Sbjct: 143 IRPFYKMMLHKPITLHDMESVDSEYYNSLRWI--LENDPTELDLRFIIDEELFGQTHQHE 200
Query: 958 LKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFN 1017
LK GG + VTN+NK +Y++ + ++ +I AF G +LI +K+F+ +E
Sbjct: 201 LKNGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENEL- 259
Query: 1018 QLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRA 1077
+LL G D+DV+D R++T+Y GYS + I+ FW+ V + ++R LL+FVT SR
Sbjct: 260 ELLMCGLGDVDVNDWREHTKYKNGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRV 319
Query: 1078 PLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKL 1137
P+ GF L S + W E+LP A TC+N L LP Y+ L KL
Sbjct: 320 PMNGFAELYGSNGPQSFTVEQ--WGT-----PEKLPRAHTCFNRLDLPPYESFEELWDKL 372
Query: 1138 LYAISSNAGFE 1148
AI + GF+
Sbjct: 373 QMAIENTQGFD 383
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 203 bits (516), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 208/394 (52%), Gaps = 29/394 (7%)
Query: 758 REFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSR--LKSSIHVSFV 815
REF RK A +R E + R +I E+ +R++ S+ LK+ + + F
Sbjct: 20 REFKQKYDYFRKKLKKPADIPNR-FEXKLHRNNIFEESYRRIXSVKRPDVLKARLWIEFE 78
Query: 816 SECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYL-ENGIQ 874
SE GLDYGG+++E+ +SK F P YGLF ++T + L N + E+ +
Sbjct: 79 SE-----KGLDYGGVAREWFFLLSKEXFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLS 133
Query: 875 MFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDG 934
F F+GRV G A++ G LLD F F + LG+ L++ ++D E Y +L ++ +
Sbjct: 134 YFTFIGRVAGLAVFHGKLLDGFFIRPFYKXXLGKQITLNDXESVDSEYYNSLKWI--LEN 191
Query: 935 DVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNA 994
D EL L F + EE+FG+ + ++LKP G + VTNENK +Y+ + ++ ++ NA
Sbjct: 192 DPTELDLXFCIDEENFGQTYQVDLKPNGSEIXVTNENKREYIDLVIQWRFVNRVQKQXNA 251
Query: 995 FYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWE 1054
F G T+L+ +K+F+ +E +LL G D+DV+D R+++ Y GY I+ FW+
Sbjct: 252 FLEGFTELLPIDLIKIFDENEL-ELLXCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWK 310
Query: 1055 VVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDV 1109
V + ++R LL+FVT SR P GF L S FTI + W
Sbjct: 311 AVLLXDAEKRIRLLQFVTGTSRVPXNGFAELYGSNGPQLFTIEQ-------WG-----SP 358
Query: 1110 ERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISS 1143
E+LP A TC+N L LP Y+ L+ KLL A+ +
Sbjct: 359 EKLPRAHTCFNRLDLPPYETFEDLREKLLXAVEN 392
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/396 (32%), Positives = 210/396 (53%), Gaps = 27/396 (6%)
Query: 758 REFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSR-LKSSIHVSFVS 816
R+F + + R +A P + I+I V R + ED F+Q+ S + L+ + V F
Sbjct: 21 RDFKAKVQYFRFWCQQLAMP--QHIKITVTRKTLFEDSFQQIMSFSPQDLRRRLWVIFPG 78
Query: 817 ECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMF 876
E GLDYGG+++E+ +S P Y LF + L N A+ + ++ F
Sbjct: 79 E-----EGLDYGGVAREWFFLLSHEVSNPMYCLFEYAGKDNYCLQINPASYINPDHLKYF 133
Query: 877 EFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDV 936
F+GR + AL+ G +D FS F +++L + L +L ++DPE Y +L++VK + +
Sbjct: 134 RFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEFYNSLIWVKENNIEE 193
Query: 937 KELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFY 996
+L + F+V +E G+ +LKP GG+ VT ENK +Y+ +A+++L+R + + AF+
Sbjct: 194 CDLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQTQAFF 253
Query: 997 RGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVV 1056
G +++ +L+ F+A E LL G +ID++D +++ Y Y+ S+ I FW+ V
Sbjct: 254 EGFNEILPQQYLQYFDAKELEVLLC-GMQEIDLNDWQRHAIYR-RYARTSKQIMWFWQFV 311
Query: 1057 EGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDVER 1111
+ + ++R LL+FVT R P+ GF L S F I KV ++ W
Sbjct: 312 KEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKVGKEN--W---------- 359
Query: 1112 LPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGF 1147
LP + TC+N L LP YK LK KLL+AI GF
Sbjct: 360 LPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGF 395
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 192/380 (50%), Gaps = 21/380 (5%)
Query: 776 GPGSRSIEIVVRRGHIVEDGFRQLNSLG-SRLKSSIHVSFVSECGLPEAGLDYGGLSKEF 834
G + + VRR H+ ED +R+L+ +K+ +++ F E G D GGL +E+
Sbjct: 42 GLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGE-----EGQDAGGLLREW 96
Query: 835 LTDISKSAFAPEYGLFSQTSTSDRLLIP-NAAARYLENGIQMFEFLGRVVGKALYEGILL 893
IS+ F P Y LF +TS DR+ N ++ N + F+F+GR+V KA+Y+ LL
Sbjct: 97 YMIISREMFNPMYALF-RTSPGDRVTYTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLL 155
Query: 894 DYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEE--SFG 951
+ F+ F + +LG+ ++ + D Y+ L+Y+ + DV L D T + E FG
Sbjct: 156 ECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYL--LENDVSTLGYDLTFSTEVQEFG 213
Query: 952 KRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLF 1011
V +LKP G + VT ENK +YVH + ++ I AF G ++I + +F
Sbjct: 214 VAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIF 273
Query: 1012 NASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFV 1071
E +LL G ID+DDL+ NT Y Y S I+ FW + F+ +R L+FV
Sbjct: 274 TEQEL-ELLISGLPTIDIDDLKSNTEYH-KYQSNSIQIQWFWRALRSFDQADRAKFLQFV 331
Query: 1072 TSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSS 1131
T S+ PL GF L+ I K + +RLPSA TC+N L LP Y+
Sbjct: 332 TGTSKVPLQGFAALEGMNGIQKFQIHRD------DRSTDRLPSAHTCFNQLDLPAYESFE 385
Query: 1132 TLKAKLLYAI-SSNAGFELS 1150
L+ LL AI ++ GF L+
Sbjct: 386 KLRHMLLLAIQEASEGFGLA 405
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 191/380 (50%), Gaps = 21/380 (5%)
Query: 776 GPGSRSIEIVVRRGHIVEDGFRQLNSLG-SRLKSSIHVSFVSECGLPEAGLDYGGLSKEF 834
G + + VRR H+ ED +R+L+ +K+ +++ F E G D GGL +E+
Sbjct: 25 GLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGE-----EGQDAGGLLREW 79
Query: 835 LTDISKSAFAPEYGLFSQTSTSDRLLIP-NAAARYLENGIQMFEFLGRVVGKALYEGILL 893
IS+ F P Y LF +TS DR+ N ++ N + F+F+GR+V KA+Y+ LL
Sbjct: 80 YMIISREMFNPMYALF-RTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLL 138
Query: 894 DYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEE--SFG 951
+ F+ F + +LG+ ++ + D Y+ L+Y+ + DV L D T + E FG
Sbjct: 139 ECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYL--LENDVSTLGYDLTFSTEVQEFG 196
Query: 952 KRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLF 1011
V +LKP G + VT ENK +YVH + ++ I AF G ++I + +F
Sbjct: 197 VCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIF 256
Query: 1012 NASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFV 1071
E +LL G ID+DDL+ NT Y Y S I+ FW + F+ +R L+FV
Sbjct: 257 TEQEL-ELLISGLPTIDIDDLKSNTEYH-KYQSNSIQIQWFWRALRSFDQADRAKFLQFV 314
Query: 1072 TSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSS 1131
T S+ PL GF L+ I K + +RLPSA TC+N L LP Y+
Sbjct: 315 TGTSKVPLQGFAALEGMNGIQKFQIHRD------DRSTDRLPSAHTCFNQLDLPAYESFE 368
Query: 1132 TLKAKLLYAISS-NAGFELS 1150
L+ LL AI + GF L+
Sbjct: 369 KLRHMLLLAIQECSEGFGLA 388
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/370 (32%), Positives = 193/370 (52%), Gaps = 29/370 (7%)
Query: 782 IEIVVRRGHIVEDGFRQLNSLGSR-LKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISK 840
++I V R + ED F+Q+ +L L+ ++V F E GLDYGGL++E+ +S
Sbjct: 24 VKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGE-----EGLDYGGLAREWFFLLSH 78
Query: 841 SAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHV 900
P Y LF ++ L N A+ + + F F+GR + AL+ G +D FS
Sbjct: 79 EVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLP 138
Query: 901 FVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLD--FTVTEESFGKRHVIEL 958
F +++L + + +L ++D E Y +L++++ D +++E L+ F+V E GK +L
Sbjct: 139 FYKRMLSKKLTIKDLESIDTEFYNSLIWIR--DNNIEECGLEMYFSVDMEILGKVTSHDL 196
Query: 959 KPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQ 1018
K GG + VT ENK +Y+ M +++ +R + + AF G +++ WL+ F+ E
Sbjct: 197 KLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEV 256
Query: 1019 LLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAP 1078
+L G ++D+ D ++NT Y Y+ S+ I FW+ V+ + + R LL+FVT R P
Sbjct: 257 MLC-GMQEVDLADWQRNTVYR-HYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLP 314
Query: 1079 LLGFKHLQPS-----FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTL 1133
L GF L S F I KV D+ W LP + TC+N L LP YK L
Sbjct: 315 LGGFAELMGSNGPQKFCIEKVGKDT--W----------LPRSHTCFNRLDLPPYKSYEQL 362
Query: 1134 KAKLLYAISS 1143
K KLL+AI
Sbjct: 363 KEKLLFAIEE 372
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 183 bits (464), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 193/373 (51%), Gaps = 30/373 (8%)
Query: 782 IEIVVRRGHIVEDGFRQLNSLG----SRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTD 837
+ + VRR HI++D +L + + LK ++V F E G+D GG+SKEF
Sbjct: 6 LRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGE-----QGVDEGGVSKEFFQL 60
Query: 838 ISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAF 897
+ + F P+ G+F+ ++ +L N ++ E F +G V+G A+Y +LD F
Sbjct: 61 VVEEIFNPDIGMFTYDEST-KLFWFNPSSFETEG---QFTLIGIVLGLAIYNNCILDVHF 116
Query: 898 SHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKE-LCLDFTVTE-ESFGKRHV 955
V +KL+G+ +L P LY++L + Y+G+V++ + + F +++ + FG +
Sbjct: 117 PMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMM 176
Query: 956 IELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLK-LFNAS 1014
+LK G +TNEN+ ++V+ +DY LN+ + AF RG + + S LK LF
Sbjct: 177 YDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPE 236
Query: 1015 EFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSC 1074
E L+ G R ++D L + T Y GGY+ S I+ FWE+V F +++ + L+F T
Sbjct: 237 EIELLICGSR-NLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGT 295
Query: 1075 SRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLK 1134
RAP+ G L+ + G D ERLP++ TC+N L LP Y LK
Sbjct: 296 DRAPVGGLGKLK-------------MIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLK 342
Query: 1135 AKLLYAISSNAGF 1147
+LL AI+ GF
Sbjct: 343 ERLLKAITYAKGF 355
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 186/372 (50%), Gaps = 30/372 (8%)
Query: 784 IVVRRGHIVEDGFRQ-LNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSA 842
I VRR +I ED +++ + LK + + F E GLDYGG+S+EF +S
Sbjct: 77 IKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGE-----EGLDYGGVSREFFFLLSHEM 131
Query: 843 FAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFV 902
F P Y LF ++ + + N + + F+F+GRVVG ++ LD F
Sbjct: 132 FNPFYCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALY 191
Query: 903 QKLLGRYSFLDELSTLDPELYR--NLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKP 960
+ +L + L ++ +D E+Y N M DG L L F+ +E FG+ ++LKP
Sbjct: 192 KMMLRKKVVLQDMEGVDAEVYNSLNWMLENSIDG---VLDLTFSADDERFGEVVTVDLKP 248
Query: 961 GGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLL 1020
G + VT+ NK +YV +++ ++ AF G +LI + +F+ E +LL
Sbjct: 249 DGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDEREL-ELL 307
Query: 1021 SGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLL 1080
GG +ID++D +K+T Y GY E I+ FW+ V ++ ++R LL+F T SR P+
Sbjct: 308 IGGIAEIDIEDWKKHTDYR-GYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVN 366
Query: 1081 GFKHLQPS-----FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKA 1135
GFK LQ S FTI K +V++LP + TC+N + LP Y ++K
Sbjct: 367 GFKDLQGSDGPRRFTIEKAG------------EVQQLPKSHTCFNRVDLPQYVDYDSMKQ 414
Query: 1136 KLLYAISSNAGF 1147
KL A+ GF
Sbjct: 415 KLTLAVEETIGF 426
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring
The E2 To The Hect Domain
Length = 380
Score = 179 bits (455), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 190/380 (50%), Gaps = 31/380 (8%)
Query: 777 PGSRSIEIVVRRGHIVEDGFRQLNSLGSR-LKSSIHVSFVSECGLPEAGLDYGGLSKEFL 835
P + I V R I E+ +RQ+ + L + + F E GLDYGG+++E+L
Sbjct: 20 PQAGHCRIEVSREEIFEESYRQVXKXRPKDLWKRLXIKFRGE-----EGLDYGGVAREWL 74
Query: 836 TDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDY 895
+S P YGLF + L N + + F F+GR+ G A++ G +D
Sbjct: 75 YLLSHEXLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIXGXAVFHGHYIDG 134
Query: 896 AFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLD--FTVTEESFGKR 953
F+ F ++LLG+ LD+ +DP+L+ +L+++ + D+ + LD F V ++G+
Sbjct: 135 GFTLPFYKQLLGKSITLDDXELVDPDLHNSLVWI--LENDITGV-LDHTFCVEHNAYGEI 191
Query: 954 HVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNA 1013
ELKP G V ENK +YV +++ R I A +G ++I LK F+
Sbjct: 192 IQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDE 251
Query: 1014 SEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTS 1073
E +L+ G IDV+D + NTR + S +K FW+ VE F+ + R LL+FVT
Sbjct: 252 KEL-ELIICGLGKIDVNDWKVNTRLKHC-TPDSNIVKWFWKAVEFFDEERRARLLQFVTG 309
Query: 1074 CSRAPLLGFKHLQPS-----FTIHKV-ACDSSLWAVIGGQDVERLPSASTCYNTLKLPTY 1127
SR PL GFK LQ + FTIH++ AC ++ LP A TC+N + +P Y
Sbjct: 310 SSRVPLQGFKALQGAAGPRLFTIHQIDACTNN------------LPKAHTCFNRIDIPPY 357
Query: 1128 KRSSTLKAKLLYAISSNAGF 1147
+ L KLL AI GF
Sbjct: 358 ESYEKLYEKLLTAIEETCGF 377
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
pdb|3PT3|B Chain B, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
Length = 118
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 1050 KLFWEVVEGFEPKERCMLLKFVTSCSRAPLL--GFKHLQPSFTIHKVACDSSLWAVIGGQ 1107
+ FW +VE ER L+ F TS P GF+ + PS TI
Sbjct: 31 RWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRP-------------P 76
Query: 1108 DVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAI-SSNAGF 1147
D + LP+A+TC + L +P Y LK KLL AI + N GF
Sbjct: 77 DDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGF 117
>pdb|1XQ1|A Chain A, X-Ray Structure Of Putative Tropinone Reducatse From
Arabidopsis Thaliana Gene At1g07440
pdb|2Q45|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Putative Tropinone Reductase From Arabidopsis Thaliana
Gene At1g07440
Length = 266
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 834 FLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILL 893
F++ I+ A ++S T + L N A + +GI+ V+ L E +
Sbjct: 148 FMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYD 207
Query: 894 DYAFSHVFVQKLLGRYSFLDELSTL 918
D V +K LGR+ +E+S+L
Sbjct: 208 DEFKKVVISRKPLGRFGEPEEVSSL 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,512,846
Number of Sequences: 62578
Number of extensions: 1330479
Number of successful extensions: 2721
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2668
Number of HSP's gapped (non-prelim): 17
length of query: 1150
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1041
effective length of database: 8,152,335
effective search space: 8486580735
effective search space used: 8486580735
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)