Query 045956
Match_columns 1150
No_of_seqs 382 out of 1486
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:18:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4427 E3 ubiquitin protein l 100.0 2E-206 4E-211 1755.1 61.0 1024 13-1150 1-1096(1096)
2 KOG0942 E3 ubiquitin protein l 100.0 6E-149 1E-153 1314.6 57.0 957 13-1150 1-1001(1001)
3 COG5021 HUL4 Ubiquitin-protein 100.0 2.3E-85 5E-90 804.3 32.9 358 776-1150 509-872 (872)
4 KOG0941 E3 ubiquitin protein l 100.0 4.7E-83 1E-87 755.5 33.0 442 673-1149 398-849 (850)
5 cd00078 HECTc HECT domain; C-t 100.0 3.6E-80 7.9E-85 712.9 33.1 349 783-1148 2-352 (352)
6 smart00119 HECTc Domain Homolo 100.0 6.1E-76 1.3E-80 672.4 30.6 329 804-1150 5-336 (336)
7 KOG0939 E3 ubiquitin-protein l 100.0 2.7E-76 5.9E-81 685.9 25.0 382 738-1150 331-720 (720)
8 KOG0170 E3 ubiquitin protein l 100.0 4.6E-69 9.9E-74 604.6 26.5 398 735-1150 164-621 (621)
9 PF00632 HECT: HECT-domain (ub 100.0 1.3E-63 2.8E-68 567.5 22.9 303 836-1150 1-317 (317)
10 KOG0940 Ubiquitin protein liga 100.0 6.9E-49 1.5E-53 445.6 14.3 343 775-1142 10-358 (358)
11 KOG0943 Predicted ubiquitin-pr 100.0 2E-36 4.3E-41 357.0 22.0 256 872-1143 2741-3009(3015)
12 PF00612 IQ: IQ calmodulin-bin 97.5 0.00012 2.6E-09 50.4 3.1 21 42-62 1-21 (21)
13 smart00015 IQ Short calmodulin 96.8 0.00093 2E-08 48.4 2.4 22 41-62 2-23 (26)
14 KOG4427 E3 ubiquitin protein l 92.1 0.12 2.5E-06 63.8 3.5 135 431-578 385-523 (1096)
15 PTZ00014 myosin-A; Provisional 64.5 8.9 0.00019 50.1 5.4 25 41-65 776-800 (821)
16 PTZ00014 myosin-A; Provisional 64.1 11 0.00024 49.3 6.2 31 31-61 789-819 (821)
17 KOG0377 Protein serine/threoni 60.9 8.9 0.00019 45.6 4.0 25 40-64 15-39 (631)
18 KOG1419 Voltage-gated K+ chann 58.3 8.5 0.00018 47.1 3.4 35 24-58 322-356 (654)
19 KOG0164 Myosin class I heavy c 51.5 23 0.0005 44.6 5.5 28 39-66 693-720 (1001)
20 KOG0163 Myosin class VI heavy 49.7 12 0.00027 46.9 2.9 32 35-66 806-837 (1259)
21 KOG0160 Myosin class V heavy c 43.6 35 0.00076 44.6 5.7 36 24-59 678-713 (862)
22 KOG0160 Myosin class V heavy c 37.9 53 0.0011 43.1 6.0 30 41-70 717-746 (862)
23 PF08763 Ca_chan_IQ: Voltage g 28.0 57 0.0012 25.8 2.5 21 44-64 11-31 (35)
24 PF03087 DUF241: Arabidopsis p 27.3 1.1E+02 0.0024 34.1 5.7 50 19-71 50-101 (231)
25 KOG0162 Myosin class I heavy c 23.1 1.1E+02 0.0024 39.0 5.0 30 39-69 693-722 (1106)
No 1
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-206 Score=1755.11 Aligned_cols=1024 Identities=45% Similarity=0.733 Sum_probs=914.3
Q ss_pred CCcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhhhhccc
Q 045956 13 GASTKEISREALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKKVAVQLQEEWVALVNCHASLITGSWISSVVLRP 92 (1150)
Q Consensus 13 GaS~~e~~r~~lL~ka~~eRe~R~~~rrr~~aAi~IQa~vRg~l~rk~~~~~~r~efD~~~~~~~~~~~~~~l~~~llr~ 92 (1150)
|+|..+++|++||+|++||||||+.+|||++||++||++||||++|||++..|++|||.++.+++.+.++ ...+..|.
T Consensus 1 m~~~~q~sra~fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I~~e~d~~f~~d~~d~~~--~~erv~~~ 78 (1096)
T KOG4427|consen 1 MFSSGQISRAAFLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKKAQIEIQEEFDNLFSCDSVDLTK--VLERVARP 78 (1096)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHH--HHHHHhhh
Confidence 4566678999999999999999999999999999999999999999999999999999999988765555 33677788
Q ss_pred eEEEEecccccccccccchhHHHHHHHHHHHhcccCC-CCCcceeeeccccccccccHHHHHHHHHHHHHHHhhcCCCCC
Q 045956 93 FLFFVTRLSTQHQKIQTRDIDCMQKCFKILLDSINSS-DSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDKSH 171 (1150)
Q Consensus 93 ~lFf~~~~~~~~~~~~~~D~~Ri~~~~~~L~~s~~~~-~~~~~~~~l~~~~~~~~~~W~~qik~ll~lC~~~L~~~~~~~ 171 (1150)
|++|.+.....|++++.+ .+|++..|+.|+.||+++ |.|.+||++++++ ++...|+.|||+++|+||++|.+|+|+.
T Consensus 79 ~l~var~ll~q~r~ie~~-~e~~~~iCr~il~smds~n~~~~sfvsl~l~k-e~sk~w~~qik~ils~c~~lL~eln~Er 156 (1096)
T KOG4427|consen 79 FLPVARSLLVQHRKIEAR-EERLEQICRKILLSMDSENDQKYSFVSLALGK-EDSKTWICQIKRILSLCSFLLTELNPER 156 (1096)
T ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhcCCCCcceeeeeehhcc-cchHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 888888777777764433 788888889999888854 6999999999997 6666999999999999999999999987
Q ss_pred CCcccccccchhhHHHHHHhcChhhHHhhcccchhhHHHHHHHHH-HHHHh-hhhhhHHHHHHHHH-hcCcCccccCCCc
Q 045956 172 AGSQCIVGLTILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLL-WFMGS-RNSHLYMSIRRYID-KLDITYSSQINST 248 (1150)
Q Consensus 172 ~~~~~~~~~~~l~lr~Lv~fT~~~~wk~~~~~~~~~~~~~~~~i~-~~mg~-~~~g~y~~l~~ll~-~l~~~~~~~~~~~ 248 (1150)
..|+... ++++|||++|||+++||+++|+|++++++||+.|| ++||| +++|||+.+|++|. +..++.+.+++.+
T Consensus 157 ~ad~~~~---alll~~livfTdpksWkilrn~n~e~lqtamn~ic~~i~gh~~q~~~Ys~mr~~l~~~t~~~~~~l~~~T 233 (1096)
T KOG4427|consen 157 IADSIVN---ALLLHILIVFTDPKSWKILRNENFEDLQTAMNIICQNIMGHLCQHGFYSAMRRYLKRGTKRTDPRLVITT 233 (1096)
T ss_pred HHHHHHH---HHHHHeeeEEeCCcceeehhccchhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCCCcceeeee
Confidence 5544444 99999999999999999999999999999999999 99999 99999999999999 9999999999988
Q ss_pred cccchhhhhHHHHHHHhhccccccccCCcccccccHHHHHHHHHHHhcCccccccccCcchhhhcccccccCchhHHHHH
Q 045956 249 VETDERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPWFIQRLPAFLVPALKHQSILSPCFQIFLI 328 (1150)
Q Consensus 249 ~~~~~~~~i~~a~~tl~lRPl~~~~~s~~~~~~~~~~~~~~~f~~~iLsiP~l~~~l~~~~lpal~~~~~~~P~~~~~~~ 328 (1150)
++|++++++||+...+|++ ++++.|+.+|||+|+|+.||+..+.-+|.|.++..
T Consensus 234 ---------l~a~~sl~~rpvk~~nfsd---------~l~~~fv~~IltvPaLv~hL~~~~~q~le~~ss~~-------- 287 (1096)
T KOG4427|consen 234 ---------LAATFSLRLRPVKQPNFSD---------NLVEEFVSLILTVPALVCHLPSALPQALEHLSSLM-------- 287 (1096)
T ss_pred ---------hhhhhhhccccccCCchHH---------HHHHHHHHHHhchhHHHHhcchhhHHHHHHHHHHH--------
Confidence 9999999999999999986 69999999999999999999966666666664441
Q ss_pred hhhhHHHHHHhhcccccccccCCCCchhhHHHhHhhhcCCCCCcccccCC---cchHHHHHHHHHh---------hhhhh
Q 045956 329 RRDKMLSEMLKMDQSDRHDSQKAIPPIGWALTNIICLATGSENGFVDTLD---HPSYVQVVITLAE---------NLLAW 396 (1150)
Q Consensus 329 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~lL~nll~L~~~~~~~~~~~~~---~~~yv~vl~~ll~---------nl~~w 396 (1150)
+.+|+|.-+-+++.++...++++|++++|+|||||+|++.++..+.++++ |..|++++.++.+ ++++|
T Consensus 288 l~~K~l~~l~d~~~~ee~~tsme~~~~l~llgNiv~la~is~~~~e~~~~~~f~~~~~~sl~~~~e~tv~~~tk~~l~~w 367 (1096)
T KOG4427|consen 288 LLDKILNILRDMENSEEQSTSMEGPSVLWLLGNIVHLATISETDLEDELESNFYVLYTHSLVTLAENTVSQVTKVGLTDW 367 (1096)
T ss_pred HHHHHHHHHHhhHhHHHhhcCCcccHhHHHHhhhheeeecCcccccccccccchhhhHHHHHHHHHHHhhcccccceeee
Confidence 22333443444545777888999999999999999999999876666554 4566677777765 56679
Q ss_pred cccccccccccccCCCccccccCcccccch------hHHHHHHHhhhcccc-----------hhhhH----HHHHHHHhh
Q 045956 397 VDNVGWVKEKKDLQGNVETSAAGIDAVLHD------NESLNITYMELFRPV-----------CQQWH----LMKLLEIAK 455 (1150)
Q Consensus 397 ~~~~gw~~~~~~~~~~~~~s~~~~~~~~~~------~~~~~~L~~d~l~~~-----------~~~~~----~~~ll~~~~ 455 (1150)
||++||+++..+.+.+. .+..|+.+ .+|+|.||+|.+... .++.. +..++.+++
T Consensus 368 H~vlg~~s~~~ek~~n~-----~i~~v~~q~~mlw~~~likll~~dile~~~las~~~~~~sk~s~~~~l~Is~l~sr~l 442 (1096)
T KOG4427|consen 368 HPVLGWTSNETEKGNNV-----KISLVEKQLPMLWQWRLIKLLFGDILEIRVLASKDASTSSKKSPETLLDISRLLSRAL 442 (1096)
T ss_pred ehhhccccCCCCCccch-----hHHHHHHHHHHHhhhhHHHHHhhhHHHhhhhccccccccCCCCCcchhHHHHHHHHHH
Confidence 99999999999998886 56777764 779999999998754 23333 788899998
Q ss_pred hcccc---cc----c-------ccccccccchhhhhHHHHHHHHHHHhhhccccCcccceeeccccCcchHHHHHHHHHh
Q 045956 456 TGATS---CA----A-------ANDKKYLGKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELEN 521 (1150)
Q Consensus 456 ~~~~~---~~----~-------~~~~~~~~~~~~~~v~~ly~~lL~~~~~l~~~~~~l~iL~~Laf~~~~l~~LW~~l~~ 521 (1150)
+.+.. +. . +.+..+++++.+++||.+|.+.|+|+.+| |++|+++|||.+..|+++|-.+..
T Consensus 443 rk~~~~~~~l~~v~ss~~~~~~~k~~s~~~v~lv~~iC~~y~aslnTl~~m-----r~~iltgl~~~dnll~~lW~~i~e 517 (1096)
T KOG4427|consen 443 RKSCVMGPVLGPVPSSNMLSFCPKWNSSAEVLLVENICTAYDASLNTLWQM-----RLPILTGLCYLDNLLVNLWVNILE 517 (1096)
T ss_pred HHhcccCCccCCCccchhhhccccccCcccceehhhhhhHHHhhhhhHHHh-----hhHHhhcchhhhhhHHHHHHHHHH
Confidence 85542 11 1 14667889999999999999999999999 999999999999999999999998
Q ss_pred ccCCCCCccccccccccccCccCccccchhhhhhcccccchhhHHHHHhhhcCCCCCCCCCCccCCCCccccCccchhhc
Q 045956 522 SIFPENGHIAEDNCLRTSKSSVNKKDGILDKRQKQTSKDGANKLVYALHKFTGKSQAGPNYTDTVDGQVDEESSDVWTIE 601 (1150)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (1150)
+ ||++|. + ++| ++|++...+.|+.+
T Consensus 518 ~-G~~~G~------------------------------~----------------~gs--------~~~~~~~k~~~ev~ 542 (1096)
T KOG4427|consen 518 L-GPSPGP------------------------------Q----------------PGS--------GQVNESTKDVLEVE 542 (1096)
T ss_pred h-CCCCCC------------------------------C----------------CCc--------cccchhHHHHHhHH
Confidence 8 787772 1 111 25566788899999
Q ss_pred cccccCCCCchhhhHHHHHHHHHHHhhhcccChhhhhcCCCCCCHHHHHHHHHHHHHHHHccccCCCCCCCc----cchH
Q 045956 602 SLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFTLEQQRRIAAMLNTLVYNGLNHDTGHQNR----PLMD 677 (1150)
Q Consensus 602 ~l~~~~~~~~~~~~~~L~lf~~~~sh~L~vldD~Ef~~~~~pf~l~e~~~l~~~Lk~~~~~~~~~~~~~~~~----~l~~ 677 (1150)
++..++.+.+++..++|.|||+||+|++.|+||.|||++|.||.++|++.|+.|||+++|+++|....++.+ .+++
T Consensus 543 ~~l~s~~~~sk~~tamL~LFcdc~ahlitILDd~e~yekq~pF~lee~~~i~s~lN~~vyk~i~~g~v~eak~~t~~lF~ 622 (1096)
T KOG4427|consen 543 TLLGSPTGISKPVTAMLMLFCDCYAHLITILDDIEFYEKQVPFKLEELVRIASFLNTFVYKGIWDGTVPEAKQLTTGLFD 622 (1096)
T ss_pred HHhCCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcccchhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987766554 4579
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCcCcCCCCchHHHHHHHHHHhhhccCCccccccccccccccCCcccChhhHHHHH
Q 045956 678 SAIRCLHMMYERDCRHQFCPPVLWLSPAKRSRPPIAVAARTHEVLSANMRSDESLTVSSLGSVVTTTPHVFPFEERVEMF 757 (1150)
Q Consensus 678 ~~~~lL~~Ly~rd~R~~f~p~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~Pf~~pFe~Rv~~F 757 (1150)
++++||..||+|||||+|+|++||++++... . .-.++.++.. +...-+++.+||++||++||.+|
T Consensus 623 S~h~~l~vLYeRDcRr~Fta~d~WL~pevkP--s-~f~~e~ek~~------------~~a~lll~~mpHviP~edRv~lF 687 (1096)
T KOG4427|consen 623 SAHRLLHVLYERDCRRPFTASDHWLIPEVKP--S-AFAAELEKVL------------PTADLLLTKMPHVIPHEDRVLLF 687 (1096)
T ss_pred HHHHHHHHHHHhccCCCCCcchhhcCCCCCh--h-HHHHHHHhhc------------ccceeEeccCCcccChHHHHHHH
Confidence 9999999999999999999999999998762 2 2222222211 12236788999999999999999
Q ss_pred HHHHhhhHHHhhhccCCCCCCCceeEEEecCCcHHHHHHHHHHccCC-CCCCceEEEEeccCCCCCcccccCcchHHHHH
Q 045956 758 REFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGS-RLKSSIHVSFVSECGLPEAGLDYGGLSKEFLT 836 (1150)
Q Consensus 758 ~~~i~~~k~~~~~~~~~~~~~~~~~~i~VrR~~lleDa~~~l~~~~~-~lk~~l~V~F~gE~G~~EaGiD~GG~~REFf~ 836 (1150)
|+++++||+.+++.+....++.....|+|||++|+||+|+||+..+. .+|+.|+|+|+||+|++|||||+||++|||++
T Consensus 688 R~fVqkdKa~~~lv~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFVNeqGl~EAGiDqdGvfKEFLe 767 (1096)
T KOG4427|consen 688 REFVQKDKASRGLVETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFVNEQGLDEAGIDQDGVFKEFLE 767 (1096)
T ss_pred HHHHhhhHHhhcccccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEecccCCcccccCccchHHHHHH
Confidence 99999999999988777666666689999999999999999999765 89999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceeecCCCCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHhCCCC--Chhh
Q 045956 837 DISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYS--FLDE 914 (1150)
Q Consensus 837 ~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Llg~~~--~l~D 914 (1150)
++.+.+|||.+|||.+|++ ++.+||+|.++.+++++++|+|+||++|||+|+|+++|+||+++|+.+++|+.. .+|+
T Consensus 768 eiiKkvFdp~lnLFstTs~-d~~LyPSPts~~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DE 846 (1096)
T KOG4427|consen 768 EIIKKVFDPELNLFSTTST-DRRLYPSPTSYHHENHLQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDE 846 (1096)
T ss_pred HHHHHHhcccccccccCCC-CceecCCchhhhhhchhHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhh
Confidence 9999999999999999975 689999999999999999999999999999999999999999999999999875 8999
Q ss_pred hhhcCHHHHhhHHHHhhccCccccccceeeEEeccCCceeeEeccCCCCCcccccccHHHHHHHHHHHHHhhchHHHHHH
Q 045956 915 LSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNA 994 (1150)
Q Consensus 915 L~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~a 994 (1150)
|.++|||+||||.++|+|+||+.||+|+|+|++|..|+..++||+|||++|+||++||..|||.|++|+||+|+++|+.|
T Consensus 847 Ls~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~MA~~rmnrqi~eqt~A 926 (1096)
T KOG4427|consen 847 LSSLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAMAHFRMNRQIVEQTNA 926 (1096)
T ss_pred ccccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhc-CCHHHHhhcceeecC
Q 045956 995 FYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEG-FEPKERCMLLKFVTS 1073 (1150)
Q Consensus 995 Fr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~-fs~eer~~fLkFvTG 1073 (1150)
|.+||+++|.|+||++|+|.|||+||+|++.+||++||++||+|.|||+.+|++|+|||+|++. |++|||+.||||||+
T Consensus 927 f~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dFt~eERklfLKFVTS 1006 (1096)
T KOG4427|consen 927 FYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDFTPEERKLFLKFVTS 1006 (1096)
T ss_pred HHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccCChHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999975 999999999999999
Q ss_pred cCCCCCCCcccCCCcceeee--eccCCccccccC-----------CCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHH
Q 045956 1074 CSRAPLLGFKHLQPSFTIHK--VACDSSLWAVIG-----------GQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYA 1140 (1150)
Q Consensus 1074 ssrlP~~Gf~~L~p~f~I~~--~~~d~~~~~~~~-----------g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~A 1140 (1150)
|||+|+.||++|+|||.|++ |.+|.+.|++++ |++.+||||||||||+||||+|+.+.+|||||+||
T Consensus 1007 CSrpPlLGFayLePpFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLKLPnY~kkStlreKLrYA 1086 (1096)
T KOG4427|consen 1007 CSRPPLLGFAYLEPPFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLKLPNYKKKSTLREKLRYA 1086 (1096)
T ss_pred cCCCccccccccCCCceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhhCCCcchhHHHHHHHHHH
Confidence 99999999999999999995 456778888877 89999999999999999999999999999999999
Q ss_pred HHcCCCccCC
Q 045956 1141 ISSNAGFELS 1150 (1150)
Q Consensus 1141 I~~~~GF~LS 1150 (1150)
|.+++|||||
T Consensus 1087 IssntGFELS 1096 (1096)
T KOG4427|consen 1087 ISSNTGFELS 1096 (1096)
T ss_pred hhcCCCcccC
Confidence 9999999998
No 2
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-149 Score=1314.64 Aligned_cols=957 Identities=31% Similarity=0.504 Sum_probs=760.6
Q ss_pred CCcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhhhhccc
Q 045956 13 GASTKEISREALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKKVAVQLQEEWVALVNCHASLITGSWISSVVLRP 92 (1150)
Q Consensus 13 GaS~~e~~r~~lL~ka~~eRe~R~~~rrr~~aAi~IQa~vRg~l~rk~~~~~~r~efD~~~~~~~~~~~~~~l~~~llr~ 92 (1150)
|||... +||+||.||++||.+||++|||+++|+++|++||||++|++++...|++||.+...+-++ +.+ ..++|.
T Consensus 1 g~~~~~-er~~~l~r~~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~fd~~~~~~~~~---e~~-~~~~~~ 75 (1001)
T KOG0942|consen 1 GASSLN-ERDNLLRRAAEERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFREEFDAVSTRSRGG---EEL-TKLARL 75 (1001)
T ss_pred CCcchh-hHHHHHHHHHHHHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---hhH-HHHHHH
Confidence 889888 999999999999999999999999999999999999999999999999999998766432 456 899999
Q ss_pred eEEEEecccccccccccchhHH-HHHHHHHHHhcccCCCCCcceeeeccccccccccHHHHHHHHHHHHHHHhhcCCCCC
Q 045956 93 FLFFVTRLSTQHQKIQTRDIDC-MQKCFKILLDSINSSDSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDKSH 171 (1150)
Q Consensus 93 ~lFf~~~~~~~~~~~~~~D~~R-i~~~~~~L~~s~~~~~~~~~~~~l~~~~~~~~~~W~~qik~ll~lC~~~L~~~~~~~ 171 (1150)
+.|||.+ .+|.+| +|.|++++++. . .... -...+|..|.|+++..|++.|+.+..+.
T Consensus 76 L~~Fy~~---------~~D~~rli~~~~nl~~~~---~----~~i~------~s~~~~~~~~k~l~~~c~~~l~n~~~d~ 133 (1001)
T KOG0942|consen 76 LVFFYET---------NKDSERLIMVLQNLLKQK---T----RLIE------FSKRTRLTQLKLLLRKCQRLLQNRNDDT 133 (1001)
T ss_pred HHHHhhc---------ccccHHHHHHHHHHHHHH---H----Hhhh------hhccchHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999986 699999 99999999977 2 1111 1126999999999999999999888442
Q ss_pred CCcccccccchhhHHHHHHhcChhhHHhhcccchhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcCcCccccCCCcccc
Q 045956 172 AGSQCIVGLTILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLDITYSSQINSTVET 251 (1150)
Q Consensus 172 ~~~~~~~~~~~l~lr~Lv~fT~~~~wk~~~~~~~~~~~~~~~~i~~~mg~~~~g~y~~l~~ll~~l~~~~~~~~~~~~~~ 251 (1150)
. .. ++|+||+++||+..+.-.+..+ .-...+.+.+|..|| .+.+||..+|.+++.+.++....+.
T Consensus 134 -----l-~~-~~p~~ll~~~~~~~~~~~~~~d-~~~~~~~v~~i~ay~--~k~~y~~~lr~l~~~~~~s~~~~s~----- 198 (1001)
T KOG0942|consen 134 -----L-FQ-AIPRRLLESFTSHSSLVRLLKD-LGLFNQEVHLILAYL--GKRTYYTSLRALLNSKKLSLLGRSF----- 198 (1001)
T ss_pred -----H-HH-HHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHh--ccccchhhHHHHhhhcccccccccc-----
Confidence 3 12 8999999999999999888643 566788899988999 8889999999999977777666655
Q ss_pred chhhhhHHHHHHHhhccccccccCCcccccccHHHHHHHHHHHhcCccccccccC-cchhhhcccccccCchhHHHHHhh
Q 045956 252 DERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPWFIQRLP-AFLVPALKHQSILSPCFQIFLIRR 330 (1150)
Q Consensus 252 ~~~~~i~~a~~tl~lRPl~~~~~s~~~~~~~~~~~~~~~f~~~iLsiP~l~~~l~-~~~lpal~~~~~~~P~~~~~~~~~ 330 (1150)
....|.+.+++.++++|++.+..+|+.+ .+..+|.++||+.| .+..+. ++++|+++.....+|+........
T Consensus 199 ~~n~~~~e~ll~lvl~~~~~~k~~c~~~------d~~~sf~~~~la~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1001)
T KOG0942|consen 199 ETNVLPLESLLSLVLLPLRLAKTACTNG------DLNFSFTILILAKD-HISPIFCPFFLPLFAAMKTSDPLELWEVALE 271 (1001)
T ss_pred CCCCChHHHHHHHhccccchhccccccc------cccccchHHHHhcc-cchhhccccchhHHhhhhccccchHHHHHHH
Confidence 7788999999999999999999999866 26677999999999 666666 999999999888888543322221
Q ss_pred hhHHHHHHhhcccccccccCCCCchhhHHHhHhhhcCCCCCcccccCCcchHHHHHHHHHhhhhhhccccc-cccccccc
Q 045956 331 DKMLSEMLKMDQSDRHDSQKAIPPIGWALTNIICLATGSENGFVDTLDHPSYVQVVITLAENLLAWVDNVG-WVKEKKDL 409 (1150)
Q Consensus 331 ~~~l~~~~~l~~~~~~~~~~~~~~~~~lL~nll~L~~~~~~~~~~~~~~~~yv~vl~~ll~nl~~w~~~~g-w~~~~~~~ 409 (1150)
+ .+.+.... +.+ ++.+....+.++.....|..++..+++-.. |+..- |.-..+|.
T Consensus 272 ~-------al~s~~~i---~s~------------~~~~~l~~l~q~~~~~~y~~~l~~~L~pv~--~~s~~~r~~~~~dd 327 (1001)
T KOG0942|consen 272 S-------ALESAGSI---KSG------------VSQNVLVLLHQSYLLLQYFNFLAEFLPPVS--HESAIMRHLSVKDD 327 (1001)
T ss_pred H-------HHhhhcch---hhc------------ccchhhhhhhhhhHHHHHHHHHHHHcCCcC--CCCcchhhccccch
Confidence 1 11000000 000 222222333344334558888888887111 11110 11111111
Q ss_pred CCCccccccCcccccchhHHHHHH-------HhhhcccchhhhHHHHHHHHhhhcccccccccccccccchhhhhHHHHH
Q 045956 410 QGNVETSAAGIDAVLHDNESLNIT-------YMELFRPVCQQWHLMKLLEIAKTGATSCAAANDKKYLGKLELLDIAYFY 482 (1150)
Q Consensus 410 ~~~~~~s~~~~~~~~~~~~~~~~L-------~~d~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ly 482 (1150)
....+|....++.--+ ..|-+|. ..++.. ...+.++..+++..+.+.+ .... +.+.+++|
T Consensus 328 ~~es~d~~~~v~n~l~-~~~~~~~~~~~~r~~~cl~~-~~~~~qv~~iis~~~~~~~---------~~~~--i~~~~~~~ 394 (1001)
T KOG0942|consen 328 DEESDDEDKSVPNHLK-PYCEQMSASNSSRRAACLYA-NLEKRQVDEIISSTDYDKA---------FEDL--IANLNTFC 394 (1001)
T ss_pred hhhccccchhhhhhch-HHHHhhhhhHHHHHHHHHHh-hhhHHHHHHHHHHhcchhh---------HHHH--HHHHHHHH
Confidence 1111111111122100 1111222 011111 1356677777777777654 2333 66788999
Q ss_pred HHHHHHhhhccccCcccceeeccccCcchHHHHHHH--HHhccCCCCCccccccccccccCccCccccchhhhhhccccc
Q 045956 483 SYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGE--LENSIFPENGHIAEDNCLRTSKSSVNKKDGILDKRQKQTSKD 560 (1150)
Q Consensus 483 ~~lL~~~~~l~~~~~~l~iL~~Laf~~~~l~~LW~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1150)
|+++.....+ ++..++++.|||+|.+...+|.. +... ...++ +
T Consensus 395 ~sl~~~~~~~---~p~~rll~~laf~~~~~~~~~f~~~~~~~------------------------------s~~~~--~ 439 (1001)
T KOG0942|consen 395 HSLYAQIAKL---VPLGRLLYILAFSPKLNAELWFTNCLARR------------------------------SESMA--D 439 (1001)
T ss_pred HHHHHHHHHh---CchhhhhHHHhhhHHHHHHHHHHHHHHHH------------------------------Hhhcc--c
Confidence 9999666555 77889999999999999999976 4444 11111 1
Q ss_pred chhhHHHHHhhhcCCCCCCCCCCccCCCCccccCccchhhccccccCCCCchhhhHHHHHHHHHHHhhhcccChhhhhcC
Q 045956 561 GANKLVYALHKFTGKSQAGPNYTDTVDGQVDEESSDVWTIESLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEK 640 (1150)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~lf~~~~sh~L~vldD~Ef~~~ 640 (1150)
+. .+|.|..++.|.++... . ....++++.+||.+|+|.|.+++|.||++.
T Consensus 440 ~s--~vp~L~~~~~~~~~~~~--~--------------------------~~~~~~l~~~f~~~f~~~L~s~~d~Ef~e~ 489 (1001)
T KOG0942|consen 440 GS--SVPQLIFISFGVTPEFL--L--------------------------DDRIIPLLLLFSTMFRRMLYSGHDKEFMED 489 (1001)
T ss_pred cc--cchhHHhhccCCchhhc--c--------------------------ccchhhHHHHHHHHHHhhhhcccHHHHhcC
Confidence 11 37888888888888532 1 457899999999999999999999999998
Q ss_pred CCCCCH----HHHHHHHHHHHHHHHccc----cCCC-C------CCC---------ccchHHHHHHHHHHhhhccccCCC
Q 045956 641 QVPFTL----EQQRRIAAMLNTLVYNGL----NHDT-G------HQN---------RPLMDSAIRCLHMMYERDCRHQFC 696 (1150)
Q Consensus 641 ~~pf~l----~e~~~l~~~Lk~~~~~~~----~~~~-~------~~~---------~~l~~~~~~lL~~Ly~rd~R~~f~ 696 (1150)
..+... .|++.+++.++...+... +.+. + ... ....++...++.++.+||.|..||
T Consensus 490 ~~~~~~~~~m~e~i~~lk~l~d~~l~~~~la~~~t~~~~~g~~~~r~~~~~~~~~~n~~~~v~~e~l~~~~~rd~r~~f~ 569 (1001)
T KOG0942|consen 490 PKTLWKPVMMPELILLLKYLKDILLWLVPLAFPNTREKVVGITESRRMPLRQRRRWNGRLQVVRELLTELSERDNRKEFC 569 (1001)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcccccccccccccccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 744433 367777777776654322 1110 0 000 134668889999999999999999
Q ss_pred CCCCCCCcCcCCCCchHHHHHH--HHHHhhhccCCccccccccccccccCCcccChhhHHHHHHHHHhhhHHHhhhccCC
Q 045956 697 PPVLWLSPAKRSRPPIAVAART--HEVLSANMRSDESLTVSSLGSVVTTTPHVFPFEERVEMFREFISMDKVSRKIAGDV 774 (1150)
Q Consensus 697 p~~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~~~Pf~~pFe~Rv~~F~~~i~~~k~~~~~~~~~ 774 (1150)
|+ .+ ++++..+... .....+..+ .+...||.++||++||++||++|+.++..||...+..+ .
T Consensus 570 ~~-----~e---~~dl~sd~~~e~~~~l~~~lr-------~R~l~IL~e~PF~vPF~~RVklfq~lla~dKq~~~~~~-~ 633 (1001)
T KOG0942|consen 570 PS-----KE---RPDLKSDDENELFNPLPSFLR-------FRALCILKEIPFFVPFEERVKLFQRLLALDKQRHGGDG-P 633 (1001)
T ss_pred Cc-----cc---cccccccchHHhhcchHhhhh-------hHHHHHHHcCCeeechHHHHHHHHHHHHHHHHhhcCCC-C
Confidence 97 11 1121111100 011111111 12347999999999999999999999999998765443 2
Q ss_pred CCCCCceeEEEecCCcHHHHHHHHHHccC-CCCCCceEEEEeccCCCCCcccccCcchHHHHHHHHHhhcCCCCCceeec
Q 045956 775 AGPGSRSIEIVVRRGHIVEDGFRQLNSLG-SRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQT 853 (1150)
Q Consensus 775 ~~~~~~~~~i~VrR~~lleDa~~~l~~~~-~~lk~~l~V~F~gE~G~~EaGiD~GG~~REFf~~l~~elf~p~~gLF~~t 853 (1150)
.+++. +..++|||++|+||||+++++.+ +++|..++|+|+||.|++||||||||++|||++.+++++|||+||+|..|
T Consensus 634 F~~g~-s~~~tIRRd~iyeDAfd~f~p~~e~dlk~~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T 712 (1001)
T KOG0942|consen 634 FGMGF-SPSATIRRDHIYEDAFDAFSPKGEPDLKSSIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKET 712 (1001)
T ss_pred ccCCC-CccEEEehhhhHHHHHHhcCccCCcccccceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeec
Confidence 34433 36899999999999999999955 57888999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCcccccc--cchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHhCCCC--ChhhhhhcCHHHHhhHHHH
Q 045956 854 STSDRLLIPNAAARYL--ENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYS--FLDELSTLDPELYRNLMYV 929 (1150)
Q Consensus 854 ~~~~~~l~Pnp~~~~~--~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Llg~~~--~l~DL~~lDp~l~~sL~~L 929 (1150)
.++.+||||++... .+++++|+|+|+++|||||+|+++++|||.||+++|+|.+. +++||+++||++|++|.+|
T Consensus 713 --~~~lLYPNp~~~~l~~~~~lkhy~FLGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nLifL 790 (1001)
T KOG0942|consen 713 --EDHLLYPNPTAAMLLDVDCLKHYYFLGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNLIFL 790 (1001)
T ss_pred --ccceecCCCCchhhhhhHHHHHHHHHHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHHHHH
Confidence 67899999998765 34799999999999999999999999999999999999987 8999999999999999999
Q ss_pred hhccC-ccccccceeeEEeccCCceeeEeccCCCCCcccccccHHHHHHHHHHHHHhhchHHHHHHHHhhcccccCcccc
Q 045956 930 KHYDG-DVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWL 1008 (1150)
Q Consensus 930 k~~~~-dvedL~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~aFr~Gf~~Vip~~~L 1008 (1150)
|+|++ |++||+|+|||.++.+|..++|||+|||++|+||++|+.+|||+|++|++|.+|..|+.||++||..|||++|+
T Consensus 791 k~y~gddi~eL~L~FtVv~~e~G~~~vVeLkPnGs~i~VTneNvi~YihLVsnY~LN~rir~~c~AFr~Gls~II~~eWl 870 (1001)
T KOG0942|consen 791 KNYNGDDISELQLDFTVVNSELGERQVVELKPNGSKIRVTNENVIEYIHLVSNYKLNQRIRRQCSAFRKGLSQIISPEWL 870 (1001)
T ss_pred HhcCCCchhhccceEEEeccccccceeEEeccCCccceeechhhhhhhHHhhhhHHHHHHHHHHHHHhcchhhcCCHHHH
Confidence 99998 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhcCCHHHHhhcceeecCcCCCCCCCcccCCCc
Q 045956 1009 KLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS 1088 (1150)
Q Consensus 1009 ~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~fs~eer~~fLkFvTGssrlP~~Gf~~L~p~ 1088 (1150)
+||++.|||.||+|...+||++|||+||+|.|||+++|++|.+||+|+++|+.|+|++||||||||||+|+.|||.|.|+
T Consensus 871 ~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeVl~~F~~edKr~fLKFVTscsRpPllGFK~L~P~ 950 (1001)
T KOG0942|consen 871 RMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEVLEEFSDEDKRKFLKFVTSCSRPPLLGFKALDPA 950 (1001)
T ss_pred HhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHHHHhcchHHHHHHHHHHhcCCCcccccchhcCcc
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHHHcCCCccCC
Q 045956 1089 FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 1150 (1150)
Q Consensus 1089 f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI~~~~GF~LS 1150 (1150)
|+|+. .|.+.+|||||+||+|+||||+|+++++||+||+|||++|+|||||
T Consensus 951 FcI~n-----------~gsd~~RLPTASTCmNLLKLP~y~~kt~LreKLlYAI~sgAGFeLS 1001 (1001)
T KOG0942|consen 951 FCIRN-----------AGSDDDRLPTASTCMNLLKLPPYSNKTLLREKLLYAINSGAGFELS 1001 (1001)
T ss_pred ceeee-----------CCCccccCCcHHHHHHHhcCCCcccHHHHHHHHHHHHhcccCCCCC
Confidence 99998 5668899999999999999999999999999999999999999998
No 3
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-85 Score=804.25 Aligned_cols=358 Identities=45% Similarity=0.753 Sum_probs=341.6
Q ss_pred CCCCceeEEEecCCcHHHHHHHHHHcc-CCCCCCceEEEEeccCCCCCcccccCcchHHHHHHHHHhhcCCCCCceeecC
Q 045956 776 GPGSRSIEIVVRRGHIVEDGFRQLNSL-GSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTS 854 (1150)
Q Consensus 776 ~~~~~~~~i~VrR~~lleDa~~~l~~~-~~~lk~~l~V~F~gE~G~~EaGiD~GG~~REFf~~l~~elf~p~~gLF~~t~ 854 (1150)
.+.++..+|+|||+++++|+|++++.. +..+|++|+|+|+|| +|||+||++||||.++++++|+|+|+||.++.
T Consensus 509 ~~~~~~l~I~VrRd~vf~Dsy~~i~~~~~~~~k~~L~i~F~~E-----eGiD~GGltrE~~~lLs~~~Fnp~y~LF~y~t 583 (872)
T COG5021 509 KIFDPYLHIKVRRDRVFEDSYREIMDESGDDLKKTLEIEFVGE-----EGIDAGGLTREWLFLLSKEMFNPDYGLFEYIT 583 (872)
T ss_pred cccCcceEEEEecccchHHHHHHHHHhchhhhcceEEEEecCc-----ccccCCccchHHHHHHhHHhcCCcccceeeec
Confidence 345668999999999999999999995 456777799999999 78999999999999999999999999999999
Q ss_pred CCCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHhCCCCChhhhhhcCHHHHhhHHHHhhccC
Q 045956 855 TSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDG 934 (1150)
Q Consensus 855 ~~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~Lk~~~~ 934 (1150)
++...++|||.+...++++++|+|+|++||+|||+++.+|++|+.+|||+|||++++++|+.++||++|++|.+|++++.
T Consensus 584 ~d~~~~~~n~~s~~npe~L~yf~fiGrvIGkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~ 663 (872)
T COG5021 584 EDLYTLPINPLSSINPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDI 663 (872)
T ss_pred ccccccCcCccccCCHHHHHHHHHHHHHHHHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCC
Confidence 88899999999987899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccceeeEEeccCCceeeEeccCCCCCcccccccHHHHHHHHHHHHHhhchHHHHHHHHhhcccccCcccccCCCHH
Q 045956 935 DVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNAS 1014 (1150)
Q Consensus 935 dvedL~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~aFr~Gf~~Vip~~~L~lFs~~ 1014 (1150)
|...++++|++.++.+|..++|||||||+||+||++||.+||++|++|+++++|++|++||..||.+|||++|+.||+++
T Consensus 664 d~~~l~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ 743 (872)
T COG5021 664 DETILDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDES 743 (872)
T ss_pred CcceeeeeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHH
Confidence 87789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhcCCHHHHhhcceeecCcCCCCCCCcccCCC-----cc
Q 045956 1015 EFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQP-----SF 1089 (1150)
Q Consensus 1015 EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~fs~eer~~fLkFvTGssrlP~~Gf~~L~p-----~f 1089 (1150)
||+.||||...+||++|||+||.|. ||++++++|.|||+++++|+.|+|++|||||||++|+|++||+.|+| +|
T Consensus 744 ELe~LI~G~~e~iDidd~K~~T~Y~-GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf 822 (872)
T COG5021 744 ELELLIGGIPEDIDIDDWKSNTAYH-GYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKF 822 (872)
T ss_pred HHHHHHCCCCccccHHHHhhccccc-ccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCccccee
Confidence 9999999943349999999999996 79999999999999999999999999999999999999999999999 67
Q ss_pred eeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHHHcCCCccCC
Q 045956 1090 TIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 1150 (1150)
Q Consensus 1090 ~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI~~~~GF~LS 1150 (1150)
+|++ +|.+.+|||+||||||+|+||+|+|||+||+||++||++|+||+++
T Consensus 823 ~I~~-----------~g~~~~rLP~ahTCFN~L~LP~YsSke~Lr~kL~~AI~Eg~GFg~~ 872 (872)
T COG5021 823 TIEK-----------GGTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINEGAGFGLL 872 (872)
T ss_pred eeec-----------CCCccccCCchhhhhhhccCCCCCCHHHHHHHHHHHHHhccCcCcC
Confidence 8876 5678899999999999999999999999999999999999999985
No 4
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-83 Score=755.53 Aligned_cols=442 Identities=32% Similarity=0.558 Sum_probs=395.8
Q ss_pred ccchHHHHHHHHHHhhhccccCCCCCCCCCCcCcCCCCchHHHHHHHHHHhhhccCCccccccccccccccCCcccChhh
Q 045956 673 RPLMDSAIRCLHMMYERDCRHQFCPPVLWLSPAKRSRPPIAVAARTHEVLSANMRSDESLTVSSLGSVVTTTPHVFPFEE 752 (1150)
Q Consensus 673 ~~l~~~~~~lL~~Ly~rd~R~~f~p~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~Pf~~pFe~ 752 (1150)
...++++..++..||..|+|+..+|...|++++.+..+++..++..|...... .+.++++||+++-..
T Consensus 398 ~~~i~~~l~~~~lly~vN~~~~lip~e~FY~~~l~~~id~~~dy~~w~~~~~~------------~fsfc~ypFIL~~~a 465 (850)
T KOG0941|consen 398 NKGIRSALKLLELLYKVNCRKGLIPYEEFYNEELNDRIDMKEDYVHWRTKQMN------------CFSFCNYPFILNAVA 465 (850)
T ss_pred ccchhhHHHHHHHHHHHhccCCCCCHHHhhhHHHHhHHHHHHHHHHHHHHhcc------------cceeecCCeecccHH
Confidence 45678999999999999999999999999999998888888888777654221 477899999999999
Q ss_pred HHHHHHHHH--hh----hHHHhh-hccCCCCCCCceeEEEecCCcHHHHHHHHHHcc-CCCCCCceEEEEeccCCCCCcc
Q 045956 753 RVEMFREFI--SM----DKVSRK-IAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSL-GSRLKSSIHVSFVSECGLPEAG 824 (1150)
Q Consensus 753 Rv~~F~~~i--~~----~k~~~~-~~~~~~~~~~~~~~i~VrR~~lleDa~~~l~~~-~~~lk~~l~V~F~gE~G~~EaG 824 (1150)
|..+.+--. ++ .++... ..........+.+.++|||++|++||+++++.. ..+++++|+|+|+|| .|
T Consensus 466 K~~lL~yD~rlrM~~~~~~a~~~s~~~~~~~~~~p~l~l~VrR~~lv~Dsl~~l~~~~~~Dl~K~L~V~F~gE-----~g 540 (850)
T KOG0941|consen 466 KIELLQYDARLRMESERRKAFLSSLFQGLQLLVSPYLKLTVRRDHLVEDALRQLSMISMSDLKKQLKVEFVGE-----EG 540 (850)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcEEEEEehhhhHHHHHHHHHhhhhhhhhcceEEEECCC-----cc
Confidence 998876421 11 111111 111111113468999999999999999999994 567999999999999 68
Q ss_pred cccCcchHHHHHHHHHhhcCCCCCceeecCCCCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHH
Q 045956 825 LDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQK 904 (1150)
Q Consensus 825 iD~GG~~REFf~~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~ 904 (1150)
+|+|||+||||.++.+|+++|.||||.+.+++...||+..... .-.+|+++|++||.|||+...+++|||.++||+
T Consensus 541 ~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s~~~WF~~~~~~----~~~~y~liGil~GLAIyN~~ildlpFPlAlykk 616 (850)
T KOG0941|consen 541 VDAGGVRKEFFQLLVEEIFNPEYGMFTYDEESSLLWFNPSPFE----EEKQYHLIGILCGLAIYNNTILDLPFPLALYKK 616 (850)
T ss_pred cccCchHHHHHHHHHHHHcCccccCeecccccceeeecCCCCC----ccceeeehhHHHHHHHhccceecCCCcHHHHHH
Confidence 9999999999999999999999999999988877888644332 124899999999999999999999999999999
Q ss_pred HhCCCCChhhhhhcCHHHHhhHHHHhhccC-cccc-ccceeeEEeccCCceeeEeccCCCCCcccccccHHHHHHHHHHH
Q 045956 905 LLGRYSFLDELSTLDPELYRNLMYVKHYDG-DVKE-LCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADY 982 (1150)
Q Consensus 905 Llg~~~~l~DL~~lDp~l~~sL~~Lk~~~~-dved-L~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~ 982 (1150)
|++++++++||.++.|.++++|+.|++|++ |++| ++++|++..+.+|..+++||+|||.+|+||++||++||.+|++|
T Consensus 617 Ll~~~~sl~DL~elsP~~~~sL~~lL~y~gdd~ed~f~l~F~i~~~~~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~ 696 (850)
T KOG0941|consen 617 LLDKPPSLEDLKELSPSLGKSLKELLDYEGDDVEDVFDLTFQISQDDNGIPRTYELKPNGDEIPVTNENRREFVNLYVDY 696 (850)
T ss_pred HhcCCCCHHHHHhhChHhhhhHHHHHhccccchhhheeeEEEEEehhcCccceeeccCCCcccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999998 7776 89999999999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhcCCHH
Q 045956 983 KLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPK 1062 (1150)
Q Consensus 983 ~l~~~i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~fs~e 1062 (1150)
.+|.+|++|++||++||++|+..+.+++|.|+||+.+||| ..++||+.|+++|+|+|||+++||+|+|||++++.|+.+
T Consensus 697 ~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G-~~~~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~ 775 (850)
T KOG0941|consen 697 ILNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKLICG-SEDYDWKALEETTEYDGGYTSDSPTIQWFWEIFHAFTLE 775 (850)
T ss_pred HHhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHHHhC-CCccCHHHHhhhceecCcccCCChHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999 678999999999999999999999999999999999999
Q ss_pred HHhhcceeecCcCCCCCCCcccCCCcceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHHH
Q 045956 1063 ERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAIS 1142 (1150)
Q Consensus 1063 er~~fLkFvTGssrlP~~Gf~~L~p~f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI~ 1142 (1150)
+|++||+|+||++|+|++|.+.++ +.|++ .|.++++||+||||||.|.||+|+|+|.|++||+.||+
T Consensus 776 ~kkkfL~F~TGsdRipv~G~~~l~--~~i~~-----------~~~~~~~lP~shTCfN~L~Lp~YsskekL~~kL~~Ai~ 842 (850)
T KOG0941|consen 776 EKKKFLQFLTGSDRIPVGGLAKLK--LVIQK-----------NGPDEDRLPVSHTCFNVLLLPEYSSKEKLEEKLLTAIN 842 (850)
T ss_pred HhhhheEeecCCCccccCChhhce--EEEec-----------CCCCcccCcchhhhhhhhhccccCcHHHHHHHHHHHHH
Confidence 999999999999999999999985 88876 45568999999999999999999999999999999999
Q ss_pred cCCCccC
Q 045956 1143 SNAGFEL 1149 (1150)
Q Consensus 1143 ~~~GF~L 1149 (1150)
+++||++
T Consensus 843 ~~~GF~l 849 (850)
T KOG0941|consen 843 NTEGFGL 849 (850)
T ss_pred hccCcCC
Confidence 9999987
No 5
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=3.6e-80 Score=712.90 Aligned_cols=349 Identities=49% Similarity=0.831 Sum_probs=332.9
Q ss_pred EEEecCCcHHHHHHHHHHccC-CCCCCceEEEEeccCCCCCcccccCcchHHHHHHHHHhhcCCCCCceeecCCCCcccc
Q 045956 783 EIVVRRGHIVEDGFRQLNSLG-SRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLI 861 (1150)
Q Consensus 783 ~i~VrR~~lleDa~~~l~~~~-~~lk~~l~V~F~gE~G~~EaGiD~GG~~REFf~~l~~elf~p~~gLF~~t~~~~~~l~ 861 (1150)
+++|||++|++|+++++...+ .+++.+|+|+|+|| +|+|+|||+||||+++++|+++|+++||..++++.+.++
T Consensus 2 ~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V~F~gE-----~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~~~~~~ 76 (352)
T cd00078 2 KITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGE-----EGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLY 76 (352)
T ss_pred eEEEECCcHHHHHHHHHHhcCHHHhcCceEEEECCC-----CccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCceEE
Confidence 689999999999999999965 57889999999998 689999999999999999999999999999976568999
Q ss_pred cCcccccccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHhCCCCChhhhhhcCHHHHhhHHHHhhccCccccccc
Q 045956 862 PNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCL 941 (1150)
Q Consensus 862 Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~Lk~~~~dvedL~L 941 (1150)
|||.+...++++++|+++|+++|+||++|.+++++||++|||+|+|.+++++||+++||++|++|++|++++.++++++|
T Consensus 77 ~~p~~~~~~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~l~l 156 (352)
T cd00078 77 PNPSSFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLEL 156 (352)
T ss_pred eCCCcccchhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhhhcc
Confidence 99998765678899999999999999999999999999999999999999999999999999999999998877889999
Q ss_pred eeeEEecc-CCceeeEeccCCCCCcccccccHHHHHHHHHHHHHhhchHHHHHHHHhhcccccCcccccCCCHHHHHHhh
Q 045956 942 DFTVTEES-FGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLL 1020 (1150)
Q Consensus 942 ~Ftv~~~~-~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li 1020 (1150)
+|++..+. .|...++||+|||++++||.+|+++||+++++|+++++++.|++||++||++|+|..++++|+|+||+.++
T Consensus 157 ~F~~~~~~~~~~~~~veL~~~G~~~~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lv 236 (352)
T cd00078 157 TFTIELDSSFGGAVTVELKPGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLI 236 (352)
T ss_pred eeEEEEeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHh
Confidence 99998776 88889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhcCCHHHHhhcceeecCcCCCCCCCcccCCCcceeeeeccCCcc
Q 045956 1021 SGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSL 1100 (1150)
Q Consensus 1021 ~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~fs~eer~~fLkFvTGssrlP~~Gf~~L~p~f~I~~~~~d~~~ 1100 (1150)
|| .++||+++|+++++|.|||++++++|+|||+++++||+|||++||+|+|||+|+|++||+.++|+|+|++.
T Consensus 237 cG-~~~id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i~i~~~------ 309 (352)
T cd00078 237 CG-SEDIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRV------ 309 (352)
T ss_pred CC-CCCCCHHHHHhceEecCCCCCCCHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCeEEEEC------
Confidence 99 58999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred ccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHHHcCCCcc
Q 045956 1101 WAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFE 1148 (1150)
Q Consensus 1101 ~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI~~~~GF~ 1148 (1150)
+.++++||+||||||+|+||.|+|+|+||+||++||++++|||
T Consensus 310 -----~~~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~AI~~~~gF~ 352 (352)
T cd00078 310 -----GSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAGFG 352 (352)
T ss_pred -----CCCCCCCCcchhhhccccCCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 3357999999999999999999999999999999999999997
No 6
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=6.1e-76 Score=672.42 Aligned_cols=329 Identities=47% Similarity=0.816 Sum_probs=305.0
Q ss_pred CCCCCc-eEEEEeccCCCCCcccccCcchHHHHHHHHHhhcCCCCCceeecCCCCcccccCccccc-ccchhHHHHHHhH
Q 045956 804 SRLKSS-IHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARY-LENGIQMFEFLGR 881 (1150)
Q Consensus 804 ~~lk~~-l~V~F~gE~G~~EaGiD~GG~~REFf~~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~~~-~~~~l~~f~flGr 881 (1150)
.+++++ |+|+|+|| +|+|+|||+||||+++++++++|++|||..++++ ..+||+|.+.. .++++++|+++|+
T Consensus 5 ~~~~~~~l~V~F~gE-----~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~-~~~~~~p~~~~~~~~~l~~f~~~G~ 78 (336)
T smart00119 5 EDLKKSVLEIEFEGE-----EGLDGGGVTREFFFLLSKELFNPDYGLFRYSPND-YLLYPNPRAFFANPEHLAYFRFIGR 78 (336)
T ss_pred HHhCCCeEEEEECCC-----CCccCCchHHHHHHHHHHHHhCcccCCceEcCCC-CeEEeCCCccccchHHHHHHHHHHH
Confidence 456777 99999998 6899999999999999999999999999998754 57888887654 3568899999999
Q ss_pred HHHHHHhcCCcccCcCcHHHHHHHhCCCCChhhhhhcCHHHHhhHHHHhhccCccccccceeeEE-eccCCceeeEeccC
Q 045956 882 VVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVT-EESFGKRHVIELKP 960 (1150)
Q Consensus 882 llGkAL~~g~~l~l~F~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~-~~~~G~~~~vELip 960 (1150)
+||+||++|.+++++||++|||+|+|.+++++||+++||++|++|++|+...+..++++++|++. ....|...++||+|
T Consensus 79 lig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~~~~~~l~F~~~~~~~~g~~~~~eL~~ 158 (336)
T smart00119 79 VLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDTSEELDLTFSIVLTSEFGQVKVVELKP 158 (336)
T ss_pred HHHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCCcccccceEEEEeeecCCCcceEecCC
Confidence 99999999999999999999999999999999999999999999999953222345589999954 44578888999999
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhchHHHHHHHHhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccC
Q 045956 961 GGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTG 1040 (1150)
Q Consensus 961 gG~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~g 1040 (1150)
||++++||.+||++||+++++|+++.+++.|++||++||++|+|.+++++|+|+||+.++|| .++||+++|+++|+|.+
T Consensus 159 ~G~~~~Vt~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG-~~~i~~~~l~~~~~~~~ 237 (336)
T smart00119 159 GGSNIPVTEENKKEYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICG-SPEIDVDDLKSNTEYKG 237 (336)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCC-CCCCCHHHHhhheEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999 56899999999999999
Q ss_pred CCCCCChHHHHHHHHHhcCCHHHHhhcceeecCcCCCCCCCcccCCCcceeeeeccCCccccccCCCCCCCCCeeecccC
Q 045956 1041 GYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYN 1120 (1150)
Q Consensus 1041 Gy~~~~~~I~~FWevl~~fs~eer~~fLkFvTGssrlP~~Gf~~L~p~f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn 1120 (1150)
||++++++|+|||+|+++||+|||++||+|+||++|+|++||+.++|+|+|++. +.++++||+||||||
T Consensus 238 g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~~~~~i~~~-----------~~~~~~LP~a~TCfn 306 (336)
T smart00119 238 GYSENSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALSPKFTIRKA-----------GSDDDRLPTAHTCFN 306 (336)
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHhheeccCCCCCCCCchhhcCCceEEEEC-----------CCCCCCCCccccccC
Confidence 999999999999999999999999999999999999999999999999999873 335799999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHcCCCccCC
Q 045956 1121 TLKLPTYKRSSTLKAKLLYAISSNAGFELS 1150 (1150)
Q Consensus 1121 ~LkLP~Yss~e~LreKLl~AI~~~~GF~LS 1150 (1150)
+|+||.|+|+|+||+||++||++++||+||
T Consensus 307 ~L~LP~Yss~e~l~~kL~~AI~~~~gF~l~ 336 (336)
T smart00119 307 RLKLPPYSSKEILREKLLLAINEGKGFGLS 336 (336)
T ss_pred cCcCCCCCCHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999999999997
No 7
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=2.7e-76 Score=685.89 Aligned_cols=382 Identities=36% Similarity=0.684 Sum_probs=357.1
Q ss_pred ccccccCCcccChhhHHHHHHHHHhhhHHHhhhccCCCCCCCceeEEEecCCcHHHHHHHHHHcc-CCCCCCceEEEEec
Q 045956 738 GSVVTTTPHVFPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSL-GSRLKSSIHVSFVS 816 (1150)
Q Consensus 738 ~~il~~~Pf~~pFe~Rv~~F~~~i~~~k~~~~~~~~~~~~~~~~~~i~VrR~~lleDa~~~l~~~-~~~lk~~l~V~F~g 816 (1150)
.+++.++|.++.|+.|+.+|+..++++... .....+.|+|+.+++|+|+++... .++++.++.|+|.|
T Consensus 331 f~ll~~~~~ll~F~~Kr~yf~r~L~~~~~~-----------~~~~~v~v~R~~v~~~S~~~~~~~s~~e~~~rl~I~f~g 399 (720)
T KOG0939|consen 331 FSLLLKNPMLLDFDNKRKYFKRELRKEHAS-----------SEKLAVLVRRALVLEDSFRALLYKSPEELKTRLEVTFQG 399 (720)
T ss_pred hhhheecCcceecccHHHHHHHHHHHhhcc-----------CCcceEEEeHHHHHHHHHHHHHhCCHHHHhcceEEEEec
Confidence 478999999999999999999877654332 235789999999999999999884 46799999999999
Q ss_pred cCCCCCcccccCcchHHHHHHHHHhhcCCCCCceeecCCCCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCc
Q 045956 817 ECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYA 896 (1150)
Q Consensus 817 E~G~~EaGiD~GG~~REFf~~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~ 896 (1150)
| +|+|+||+.||||..+++++|||+|+||...+++...+.|||++...++||.+|+|+||++|||+++|.+++..
T Consensus 400 E-----Eg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~d~tt~~pn~~s~~np~hLs~fkf~GriigKal~d~ql~~c~ 474 (720)
T KOG0939|consen 400 E-----EGSDAGGVTREWLQLLSREIFNPRYALFTTVGSDQTTFHPNPNSYVNPEHLSYFKFVGRIIGKALFDGQLLECY 474 (720)
T ss_pred c-----cccccchHHHHHHHHHHHHHcCCCcceEEEcCCCceEEeeCCcccCChhhhhHHHhhHHHHHHHHhcchhhhhe
Confidence 9 68999999999999999999999999999998776789999999989999999999999999999999999999
Q ss_pred CcHHHHHHHhCCCCChhhhhhcCHHHHhhHHHHhhccCcccc-ccceeeEEeccCCceeeEeccCCCCCcccccccHHHH
Q 045956 897 FSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKE-LCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQY 975 (1150)
Q Consensus 897 F~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~Lk~~~~dved-L~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eY 975 (1150)
|.+.|||+++|.+++..|+++.||++|+++.++.+. |+.+ ++++|+...+.+|...++||+|||++|.||++||.+|
T Consensus 475 ftrsfyk~ilG~~v~~~d~es~DP~y~k~l~~il~n--dis~~l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~~y 552 (720)
T KOG0939|consen 475 FTRSFYKHILGLPVTYHDMESADPEYYKSLVWILKN--DISDTLELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQEY 552 (720)
T ss_pred eeHHHHhhccCCceeeeehhhcChHHhhceeehhcC--CcccceeEEEEEeeccccccceeecccCCCceeeccccHHHH
Confidence 999999999999999999999999999999999764 4543 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchHHHHHHHHhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHH
Q 045956 976 VHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEV 1055 (1150)
Q Consensus 976 I~~~~~~~l~~~i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWev 1055 (1150)
|+++++|||..+|++|++||.+||++|||...+++|++.||+.|||| .++||++||++||+|. ||+.++++|+|||++
T Consensus 553 v~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisG-lpeidvdd~k~nt~y~-~~~~~~~~i~wFWra 630 (720)
T KOG0939|consen 553 VQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISG-LPEIDVDDLKANTEYL-GYTKASSVIQWFWRA 630 (720)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcC-CCcccHHHHHhhhhhh-cccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 8999999999999997 788999999999999
Q ss_pred HhcCCHHHHhhcceeecCcCCCCCCCcccCCC-----cceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCH
Q 045956 1056 VEGFEPKERCMLLKFVTSCSRAPLLGFKHLQP-----SFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRS 1130 (1150)
Q Consensus 1056 l~~fs~eer~~fLkFvTGssrlP~~Gf~~L~p-----~f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~ 1130 (1150)
|++|+.|||.+||+||||+|++|++||+.+.+ +|+|+..+ ...++||+||||||+|.||.|.||
T Consensus 631 v~sf~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~q~fqi~~~~-----------~s~d~LP~ahTCfnqL~LP~Y~Sy 699 (720)
T KOG0939|consen 631 VRSFDQEERAKLLQFVTGTSKVPLGGFAALEGMNGVQKFQIHADP-----------GSTDRLPTAHTCFNQLFLPHYASY 699 (720)
T ss_pred HhhhcHHHHHhhHeeecccccCCcccccccccCCcceeEEEEeCC-----------CCCCCCcchhhhhhhhcCcchhhH
Confidence 99999999999999999999999999999998 89999743 246899999999999999999999
Q ss_pred HHHHHHHHHHHHcC-CCccCC
Q 045956 1131 STLKAKLLYAISSN-AGFELS 1150 (1150)
Q Consensus 1131 e~LreKLl~AI~~~-~GF~LS 1150 (1150)
|.++++|+.||++| .||++.
T Consensus 700 e~l~~~LllAi~E~segfg~a 720 (720)
T KOG0939|consen 700 EQLRESLLLAINEGSEGFGMA 720 (720)
T ss_pred HHHHHHHHHHHHhhhhccCcC
Confidence 99999999999997 799863
No 8
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-69 Score=604.59 Aligned_cols=398 Identities=29% Similarity=0.506 Sum_probs=345.2
Q ss_pred cccc-cccccCCcccChhhHHHHHHHH-HhhhHHHhhhccCC----CC---------CCCceeEEEecCCcHHHHHHHHH
Q 045956 735 SSLG-SVVTTTPHVFPFEERVEMFREF-ISMDKVSRKIAGDV----AG---------PGSRSIEIVVRRGHIVEDGFRQL 799 (1150)
Q Consensus 735 ~~~~-~il~~~Pf~~pFe~Rv~~F~~~-i~~~k~~~~~~~~~----~~---------~~~~~~~i~VrR~~lleDa~~~l 799 (1150)
|.+. .+-+.+||+|||++|..+|+.. ...+|+........ .+ +.-.+.+++|.|++|++.|.+.+
T Consensus 164 p~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~~~~s~~e~~~~~grL~RkK~risR~~Il~sa~kvm 243 (621)
T KOG0170|consen 164 PDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGSKDGSNDEALQQLGRLTRKKLRISRKTILASALKVM 243 (621)
T ss_pred ChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCCCCCCchHHhHhhcccchhhhhhhHHHHHHHHHHHH
Confidence 4443 4567899999999999999852 22233322221111 11 11245689999999999999999
Q ss_pred HccCCCCCCceEEEEeccCCCCCcccccCcchHHHHHHHHHhhcCCCCCceeec----------CCC-----CcccccCc
Q 045956 800 NSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQT----------STS-----DRLLIPNA 864 (1150)
Q Consensus 800 ~~~~~~lk~~l~V~F~gE~G~~EaGiD~GG~~REFf~~l~~elf~p~~gLF~~t----------~~~-----~~~l~Pnp 864 (1150)
...++. +..++|+|.+|+|. |. ||+-||++++++++..++.|||+.. +++ ..++||.|
T Consensus 244 ~~ygss-~~vLEIEY~~EvGT---GL---GPTLEFYtlVSk~fq~~sLgmWR~~s~s~~~~k~~~~t~~v~~~sgLFp~P 316 (621)
T KOG0170|consen 244 EKYGSS-KAVLEIEYEEEVGT---GL---GPTLEFYTLVSKEFQRASLGMWRCNSVSYRSGKPQENTKDVYITSGLFPRP 316 (621)
T ss_pred HHhcCC-cceEEEEecccccc---CC---CcceeeHHHHHHHHhhccccccccCceeeccCCCCCCcchhhhccccCCCC
Confidence 997765 67899999999884 55 9999999999999999999999874 221 24788887
Q ss_pred cccc-----ccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHhCCCCChhhhhhcCHHHHhhHHHHhh------c-
Q 045956 865 AARY-----LENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKH------Y- 932 (1150)
Q Consensus 865 ~~~~-----~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~Lk~------~- 932 (1150)
-... .+..+++|+++|+++||||++|.++|+||+++|||.++|++.+..|+..+||++.++|..|.. .
T Consensus 317 ~~~ts~~se~~kvi~~F~~LG~~vAkal~D~Rildlpls~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~ 396 (621)
T KOG0170|consen 317 WPPTSNSSENEKVIELFRLLGTFVAKALQDGRILDLPLSKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKKL 396 (621)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHhcCceEeeeccHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhhh
Confidence 5432 233578999999999999999999999999999999999999999999999999999987632 1
Q ss_pred ---cC--------------ccccccceeeEEeccCCceeeEeccCCCCCcccccccHHHHHHHHHHHHHhhchHHHHHHH
Q 045956 933 ---DG--------------DVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAF 995 (1150)
Q Consensus 933 ---~~--------------dvedL~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~aF 995 (1150)
-| .+|||+|+||++ | ...+||+|||+|++||..|.+|||+.|+++.++++|.+|++||
T Consensus 397 ~~~~~d~~~a~~dltl~g~~iEdL~LdFTLP----G-~p~ieL~p~g~~~~V~~~NleEYi~~VId~tv~kGVqkQleAF 471 (621)
T KOG0170|consen 397 EKYIGDVANADDDLTLNGCSIEDLSLDFTLP----G-FPDIELIPGGANKPVTISNLEEYIHGVIDATVGKGVQKQLEAF 471 (621)
T ss_pred hhhcccccccccceeecCcchhhceeeEecC----C-CCCeeeccCCCCCccccccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 11 258899999987 3 3569999999999999999999999999999999999999999
Q ss_pred HhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhcCCHHHHhhcceeecCcC
Q 045956 996 YRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCS 1075 (1150)
Q Consensus 996 r~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~fs~eer~~fLkFvTGss 1075 (1150)
+.||.+|.|.+-|++|+|+||..++||...+|+.+.|.+|++.+|||+.++|+|+.|.+++..|+.||+|.|||||||++
T Consensus 472 r~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSp 551 (621)
T KOG0170|consen 472 RSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSP 551 (621)
T ss_pred HhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCC
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCcceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHHHcCCC-ccCC
Q 045956 1076 RAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAG-FELS 1150 (1150)
Q Consensus 1076 rlP~~Gf~~L~p~f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI~~~~G-F~LS 1150 (1150)
|+|+|||+.|+|++||.+...+. ...+++.||+++||.|+||||+|+|+|+||+||.|||++|+| |+||
T Consensus 552 rLPiGGfasLNPklTIVrKh~e~------~~t~Dd~LPSVMTCaNYLKLP~YSSkEiM~~kL~~Ai~EGqgSFhLS 621 (621)
T KOG0170|consen 552 RLPIGGFASLNPKLTIVRKHAED------SETPDDYLPSVMTCANYLKLPPYSSKEIMRSKLLYAIEEGQGSFHLS 621 (621)
T ss_pred CCCCCcccccCCCeEEEeccCCC------CCCcccccchHHHHHhhhcCCCCchHHHHHHHHHHHHHccccccccC
Confidence 99999999999999999987643 234678999999999999999999999999999999999987 9998
No 9
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=1.3e-63 Score=567.50 Aligned_cols=303 Identities=45% Similarity=0.746 Sum_probs=256.8
Q ss_pred HHHHHhhcCCCCCceeecCCCCcccccCccc-------ccccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHh-C
Q 045956 836 TDISKSAFAPEYGLFSQTSTSDRLLIPNAAA-------RYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLL-G 907 (1150)
Q Consensus 836 ~~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~-------~~~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Ll-g 907 (1150)
+++++|+|+|++|||..++++ +.++||+.. ...+.++++|+++|++||+||++|.+++++|+++|||+|+ |
T Consensus 1 ~l~~~el~~~~~~lF~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~lig~ai~~~~~l~~~f~~~~~k~l~~g 79 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSNN-GLFWPNPNSNRDSPSPASSEEHLKMFRFLGRLIGKAIRNGIPLPLPFSPAFWKYLLSG 79 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTTT-CEEEEECCH----TTGGGSTTHHHHHHHHHHHHHHHHHTTS-ESSEB-HHHHHHHT-T
T ss_pred CHHHHHhcCccCCCceEcCCC-CEEeCCCcccccccccccCHHHHHHHHHHHHHHHHHHHcCCccccCcCHHHHHHHhcC
Confidence 579999999999999777644 566677642 2234678999999999999999999999999999999999 9
Q ss_pred CCCChhhhhhcCHHHHhhHHHHhhccC---ccccccceeeEEecc-CCceeeEeccCCCCCcccccccHHHHHHHHHHHH
Q 045956 908 RYSFLDELSTLDPELYRNLMYVKHYDG---DVKELCLDFTVTEES-FGKRHVIELKPGGGDTSVTNENKMQYVHAMADYK 983 (1150)
Q Consensus 908 ~~~~l~DL~~lDp~l~~sL~~Lk~~~~---dvedL~L~Ftv~~~~-~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~ 983 (1150)
.+++++|++++||+++++|++|++++. ++++++++|+++... .|..+++||+|||++++||.+||.+||+++++|+
T Consensus 80 ~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~ 159 (317)
T PF00632_consen 80 EPLTLEDLEEIDPELYKSLKKLLDMDNDEEDVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYR 159 (317)
T ss_dssp ----HHHHHCCSHHHHHHHHHHHHSHSGSCTTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHH
T ss_pred CCCccccchhcCchhhcchhhheeccccccceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhh
Confidence 999999999999999999999997653 367899999987543 5667789999999999999999999999999999
Q ss_pred HhhchHHHHHHHHhhcccccCcccccCCCHHHHHHhhcCCCCc-cChhhhhhcccccCCCCCCChHHHHHHHHHhcCCHH
Q 045956 984 LNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHD-IDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPK 1062 (1150)
Q Consensus 984 l~~~i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~-iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~fs~e 1062 (1150)
++++++.|++||++||.+|+|..++++|+|+||+.++|| .++ ||+++|+++++|.+||++++++|+|||++|++||++
T Consensus 160 l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G-~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~ 238 (317)
T PF00632_consen 160 LNESVKKQLEAFRKGFYSVIPLELLSLFSPEELERLLCG-SPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQE 238 (317)
T ss_dssp HTTTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHC-BSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HH
T ss_pred cccccchhHHHHhcchhhcchhHHHHcCCHHHHHHHhcC-ccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHH
Confidence 999999999999999999999999999999999999999 566 999999999999999999999999999999999999
Q ss_pred HHhhcceeecCcCCCCCCCcccCCCcceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHHH
Q 045956 1063 ERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAIS 1142 (1150)
Q Consensus 1063 er~~fLkFvTGssrlP~~Gf~~L~p~f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI~ 1142 (1150)
+|++||+|+||++|+|++||+.++|+|+|+..+. .++++||+||||||+|+||.|+|+|+||+||++||+
T Consensus 239 ~~~~fL~F~TG~~~lP~~G~~~l~~~i~i~~~~~----------~~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~Ai~ 308 (317)
T PF00632_consen 239 ERRKFLRFVTGSSRLPPGGFSNLNPKITIQFSDD----------SPDDRLPTAHTCFNTLKLPRYSSKEILREKLLYAIE 308 (317)
T ss_dssp HHHHHHHHHHSSSSB-TTGGGGGE-EEEEEEESC-----------STTS--EEEGGGTEEEEEE-SSHHHHHHHHHHHHH
T ss_pred HhheeEEEecCCCCCCccccccccceeEEeecCC----------CccccCceecCcCCEEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998542 136799999999999999999999999999999999
Q ss_pred cC-CCccCC
Q 045956 1143 SN-AGFELS 1150 (1150)
Q Consensus 1143 ~~-~GF~LS 1150 (1150)
++ .||+||
T Consensus 309 ~~~~gF~~s 317 (317)
T PF00632_consen 309 NGQEGFGLS 317 (317)
T ss_dssp HT-------
T ss_pred cCCCCcCcC
Confidence 99 999998
No 10
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-49 Score=445.60 Aligned_cols=343 Identities=35% Similarity=0.608 Sum_probs=319.8
Q ss_pred CCCCCceeEEEecCCcHHHHHHHHHHcc-CCCCCCceEEEEeccCCCCCcccccCcchHHHHHHHHHhhcCCCCCceeec
Q 045956 775 AGPGSRSIEIVVRRGHIVEDGFRQLNSL-GSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQT 853 (1150)
Q Consensus 775 ~~~~~~~~~i~VrR~~lleDa~~~l~~~-~~~lk~~l~V~F~gE~G~~EaGiD~GG~~REFf~~l~~elf~p~~gLF~~t 853 (1150)
..+++..++++|+|++++||+|+++... ..++++++.+.|.|| +|.|+||+.||||..+++++|+|.+++|..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~~e-----e~ldy~glprewf~~lS~e~~~p~~~~~~~~ 84 (358)
T KOG0940|consen 10 PPQGPQQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFKGE-----EGLDYGGLPREWFFLLSHEGFNPWYGLFQHS 84 (358)
T ss_pred CCCCCceeEEEechhhhHHHHHHHHhCCCchhhhhcceeecccc-----cccccCCCCcceeeeeccccCCcceeeeeec
Confidence 3456778999999999999999999984 456899999999999 6789999999999999999999999999999
Q ss_pred CCCCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHhCCCCChhhhhhcCHHHHhhHHHHhhcc
Q 045956 854 STSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYD 933 (1150)
Q Consensus 854 ~~~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~Lk~~~ 933 (1150)
.++ +.+..+|.+...++++++|.|+|+.+|.|++|+..++.- -.+||+.+++++.+++|.+.+|++.|+++.++++.+
T Consensus 85 ~~~-~tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~ktt~ldd~e~~d~e~~~s~~~~~en~ 162 (358)
T KOG0940|consen 85 RKD-YTLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKKTTTLDDREAVDPEFYNSLTWIREND 162 (358)
T ss_pred ccc-cccccCCccCCCCCcccccccccccccccceeeEecCCC-ceehhhhhhcCccccCchhhcCccccccccccccCC
Confidence 765 789999998877899999999999999999999999997 999999999999999999999999999999998654
Q ss_pred CccccccceeeEEeccCCceeeEeccCCCCCcccccccHHHHHHHHHHHHHhhchHHHHHHHHhhcccccCcccccCCCH
Q 045956 934 GDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNA 1013 (1150)
Q Consensus 934 ~dvedL~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~aFr~Gf~~Vip~~~L~lFs~ 1013 (1150)
+.. +++|.++...+|.....+|+|+|.++.||.+|+++||.++.+ ++...+..|.++|.+||..++|..++++|.+
T Consensus 163 --~~~-~~~f~~~~~~~g~~~~~~l~p~g~~~~v~~~n~~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e 238 (358)
T KOG0940|consen 163 --PTN-DLTFSVESEVLGQITTQELKPNGANIQVTEENKKEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLRIFDE 238 (358)
T ss_pred --ccc-chhhhcchhhcCCccceeecCCCcccccccccHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCcccccccch
Confidence 333 899999999999999999999999999999999999999999 8888999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhcCCHHHHhhcceeecCcCCCCCCCcccCCC-----c
Q 045956 1014 SEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQP-----S 1088 (1150)
Q Consensus 1014 ~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~fs~eer~~fLkFvTGssrlP~~Gf~~L~p-----~ 1088 (1150)
.|++.++|| ..++|+++|++++.|. +|+.++++|.|||+.+.++++++|...++|+||++++|..||+.+.. .
T Consensus 239 ~~~e~~~~~-~~~~~~~d~~~~t~~~-~~~~~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~~~ 316 (358)
T KOG0940|consen 239 MELELALSG-DPEIDVNDWKQNTEYR-GYSETDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGPRK 316 (358)
T ss_pred hhHHHHhcC-CcccchhHHhhhcccc-cccCCccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCCccCc
Confidence 999999999 8999999999999998 89999999999999999999999999999999999999999998875 5
Q ss_pred ceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHHH
Q 045956 1089 FTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAIS 1142 (1150)
Q Consensus 1089 f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI~ 1142 (1150)
|+|.+ ..+.+++|.+|||||.|.+|.|.+++.|++||..||+
T Consensus 317 ~~ie~------------~~~~~~~p~~htcfnrld~~~~~s~~~L~~kl~~ai~ 358 (358)
T KOG0940|consen 317 FCIEK------------WGKSTQLPRSHTCFNRLDLPPYESYEPLREKLLLAIE 358 (358)
T ss_pred eeecC------------cccccccchhcccccccccccccchhHHHHHHHHhcC
Confidence 77765 1256899999999999999999999999999999984
No 11
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-36 Score=356.98 Aligned_cols=256 Identities=25% Similarity=0.423 Sum_probs=216.7
Q ss_pred hhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHhCCCCChhhhhhcCHHHHhhHHHHhhccCccccccceeeEEeccC-
Q 045956 872 GIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESF- 950 (1150)
Q Consensus 872 ~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~- 950 (1150)
.+..|+-+|||+|.|+..|.+.|+.|++.++|++||.++.+.|+..+||.+|++|..|-.... ..|++-+|++.+-.+
T Consensus 2741 RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAhp-sSd~DadFS~md~aa~ 2819 (3015)
T KOG0943|consen 2741 RLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAHP-SSDADADFSAMDLAAA 2819 (3015)
T ss_pred HHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcCC-cccccchhhHHHHhhc
Confidence 367899999999999999999999999999999999999999999999999999998843211 122333344322111
Q ss_pred C------ceeeEeccCCCCCcccccccHHHHHHHHHHHHHhhchHHHHHHHHhhcccccCcccccCCCHHHHHHhhcCCC
Q 045956 951 G------KRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGR 1024 (1150)
Q Consensus 951 G------~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~ 1024 (1150)
| ...+|||+|||.+|+||.+|+.|||.+|++++|...-...++|+|+|+-+|||...|.-++++++..+||| -
T Consensus 2820 gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~EDfRLiicG-~ 2898 (3015)
T KOG0943|consen 2820 GDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTAEDFRLIICG-C 2898 (3015)
T ss_pred cchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCHhHheeeeec-c
Confidence 1 24579999999999999999999999999999998777889999999999999999999999999999999 6
Q ss_pred CccChhhhhhcccccCCCCCCC----hHHHHHHHHHhcCCHHHHhhcceeecCcCCCCCCC--cccCCCcceeeeeccCC
Q 045956 1025 HDIDVDDLRKNTRYTGGYSEGS----RTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLG--FKHLQPSFTIHKVACDS 1098 (1150)
Q Consensus 1025 ~~iD~~dLk~~t~Y~gGy~~~~----~~I~~FWevl~~fs~eer~~fLkFvTGssrlP~~G--f~~L~p~f~I~~~~~d~ 1098 (1150)
.++++.-|..+|-|-+.-.++. +.-+|||+|++.|+..||+.+..|+||++.+|..| |... |.+.|+
T Consensus 2899 eeVniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~e~~p~~-aSimiR------ 2971 (3015)
T KOG0943|consen 2899 EEVNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAEEGFPPM-ASIMIR------ 2971 (3015)
T ss_pred cceehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCCCccccCCCCC-Cceeec------
Confidence 7899999999997764332332 35689999999999999999999999999999865 5432 234443
Q ss_pred ccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHHHc
Q 045956 1099 SLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISS 1143 (1150)
Q Consensus 1099 ~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI~~ 1143 (1150)
.+++..||||+||...|..|.|+||.+||+||+.||+.
T Consensus 2972 -------P~dD~fLPTANTCISRLYVPlYSSKqiLkqKLLLAIKa 3009 (3015)
T KOG0943|consen 2972 -------PPDDQFLPTANTCISRLYVPLYSSKQILKQKLLLAIKA 3009 (3015)
T ss_pred -------CcccccCCcccchhhheeeechhhHHHHHHHHHHhhhc
Confidence 23568999999999999999999999999999999996
No 12
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.46 E-value=0.00012 Score=50.38 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 045956 42 TASAIFIQSVWRCYSVTKKVA 62 (1150)
Q Consensus 42 ~~aAi~IQa~vRg~l~rk~~~ 62 (1150)
.+|||.||+.||||++|++++
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 369999999999999999874
No 13
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.79 E-value=0.00093 Score=48.39 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=19.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 045956 41 ATASAIFIQSVWRCYSVTKKVA 62 (1150)
Q Consensus 41 r~~aAi~IQa~vRg~l~rk~~~ 62 (1150)
..++|+.|||.||||++|++++
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4689999999999999999874
No 14
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=0.12 Score=63.76 Aligned_cols=135 Identities=29% Similarity=0.294 Sum_probs=93.0
Q ss_pred HHHHhhhcccchhhhHHHHHHHHhhhcccccc---c-ccccccccchhhhhHHHHHHHHHHHhhhccccCcccceeeccc
Q 045956 431 NITYMELFRPVCQQWHLMKLLEIAKTGATSCA---A-ANDKKYLGKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLS 506 (1150)
Q Consensus 431 ~~L~~d~l~~~~~~~~~~~ll~~~~~~~~~~~---~-~~~~~~~~~~~~~~v~~ly~~lL~~~~~l~~~~~~l~iL~~La 506 (1150)
++-++....|++.+||+.++|..--.....++ . ....++++. +.||+.+|+.+++.++.++|..+.++.+|||.
T Consensus 385 ~i~~v~~q~~mlw~~~likll~~dile~~~las~~~~~~sk~s~~~--~l~Is~l~sr~lrk~~~~~~~l~~v~ss~~~~ 462 (1096)
T KOG4427|consen 385 KISLVEKQLPMLWQWRLIKLLFGDILEIRVLASKDASTSSKKSPET--LLDISRLLSRALRKSCVMGPVLGPVPSSNMLS 462 (1096)
T ss_pred hHHHHHHHHHHHhhhhHHHHHhhhHHHhhhhccccccccCCCCCcc--hhHHHHHHHHHHHHhcccCCccCCCccchhhh
Confidence 44444555788999998877654322111111 1 123334444 68999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHhccCCCCCccccccccccccCccCccccchhhhhhcccccchhhHHHHHhhhcCCCCC
Q 045956 507 FTPGYLLNLWGELENSIFPENGHIAEDNCLRTSKSSVNKKDGILDKRQKQTSKDGANKLVYALHKFTGKSQA 578 (1150)
Q Consensus 507 f~~~~l~~LW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1150)
|.| .|.-.....-+..++-. ...+..|.+....+..+.-++.+...-++|+.++ -.|.+++
T Consensus 463 ~~~-----k~~s~~~v~lv~~iC~~----y~aslnTl~~mr~~iltgl~~~dnll~~lW~~i~--e~G~~~G 523 (1096)
T KOG4427|consen 463 FCP-----KWNSSAEVLLVENICTA----YDASLNTLWQMRLPILTGLCYLDNLLVNLWVNIL--ELGPSPG 523 (1096)
T ss_pred ccc-----cccCcccceehhhhhhH----HHhhhhhHHHhhhHHhhcchhhhhhHHHHHHHHH--HhCCCCC
Confidence 998 56555444334444422 2334458888888888888999999999998887 3444444
No 15
>PTZ00014 myosin-A; Provisional
Probab=64.48 E-value=8.9 Score=50.10 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=19.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Q 045956 41 ATASAIFIQSVWRCYSVTKKVAVQL 65 (1150)
Q Consensus 41 r~~aAi~IQa~vRg~l~rk~~~~~~ 65 (1150)
-...|..|||+||||++|+++++..
T Consensus 776 ~~~~~~~iq~~~r~~~~r~~~~~~~ 800 (821)
T PTZ00014 776 WEPLVSVLEALILKIKKKRKVRKNI 800 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888999999999998877763
No 16
>PTZ00014 myosin-A; Provisional
Probab=64.08 E-value=11 Score=49.28 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 045956 31 ERELRNYARRATASAIFIQSVWRCYSVTKKV 61 (1150)
Q Consensus 31 eRe~R~~~rrr~~aAi~IQa~vRg~l~rk~~ 61 (1150)
....|..-+++..|++.||+.||||+++++.
T Consensus 789 ~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 789 KIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334555555677999999999999999764
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=60.89 E-value=8.9 Score=45.57 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Q 045956 40 RATASAIFIQSVWRCYSVTKKVAVQ 64 (1150)
Q Consensus 40 rr~~aAi~IQa~vRg~l~rk~~~~~ 64 (1150)
|.-+|||+||.+.|||.+|...+++
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr 39 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRR 39 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999887764
No 18
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=58.34 E-value=8.5 Score=47.08 Aligned_cols=35 Identities=29% Similarity=0.608 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 045956 24 LLEKVSQERELRNYARRATASAIFIQSVWRCYSVT 58 (1150)
Q Consensus 24 lL~ka~~eRe~R~~~rrr~~aAi~IQa~vRg~l~r 58 (1150)
|=-|+||+-...+-+|||..||-.||+.||-|.+-
T Consensus 322 fALKVQeq~RQKHf~rrr~pAA~LIQc~WR~yaa~ 356 (654)
T KOG1419|consen 322 FALKVQEQHRQKHFNRRRNPAASLIQCAWRYYAAE 356 (654)
T ss_pred hhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcc
Confidence 44578888888899999999999999999999764
No 19
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=51.47 E-value=23 Score=44.62 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=22.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045956 39 RRATASAIFIQSVWRCYSVTKKVAVQLQ 66 (1150)
Q Consensus 39 rrr~~aAi~IQa~vRg~l~rk~~~~~~r 66 (1150)
.+...-|.+||+.||||++|.+.++...
T Consensus 693 ~~l~~lvtllQK~~RG~~~R~ry~rmka 720 (1001)
T KOG0164|consen 693 ERLPSLVTLLQKAWRGWLARQRYRRMKA 720 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778999999999999999887543
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=49.72 E-value=12 Score=46.94 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=26.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045956 35 RNYARRATASAIFIQSVWRCYSVTKKVAVQLQ 66 (1150)
Q Consensus 35 R~~~rrr~~aAi~IQa~vRg~l~rk~~~~~~r 66 (1150)
++.-.=|.++.+++|+.+|||++||+.+.++.
T Consensus 806 kNkI~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 806 KNKIIYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 34445577889999999999999999988763
No 21
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=43.63 E-value=35 Score=44.60 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 045956 24 LLEKVSQERELRNYARRATASAIFIQSVWRCYSVTK 59 (1150)
Q Consensus 24 lL~ka~~eRe~R~~~rrr~~aAi~IQa~vRg~l~rk 59 (1150)
++|+.=.-++-|..--+..++++.||+++||+++|+
T Consensus 678 ~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~ 713 (862)
T KOG0160|consen 678 LIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR 713 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 455555555555555555566666666666666665
No 22
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=37.95 E-value=53 Score=43.06 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=24.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045956 41 ATASAIFIQSVWRCYSVTKKVAVQLQEEWV 70 (1150)
Q Consensus 41 r~~aAi~IQa~vRg~l~rk~~~~~~r~efD 70 (1150)
+++|||.||+.||+|++|++.+..+...+-
T Consensus 717 ~~~aai~~q~~~r~~~~r~~y~~~~~~~~~ 746 (862)
T KOG0160|consen 717 REAAAIGIQKECRSYLNRRRYRALIPASIT 746 (862)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888777666554
No 23
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=28.04 E-value=57 Score=25.81 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 045956 44 SAIFIQSVWRCYSVTKKVAVQ 64 (1150)
Q Consensus 44 aAi~IQa~vRg~l~rk~~~~~ 64 (1150)
||..||-+||.|..|+...+.
T Consensus 11 At~lI~dyfr~~K~rk~~~~~ 31 (35)
T PF08763_consen 11 ATLLIQDYFRQFKKRKEQEQQ 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999998875543
No 24
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=27.32 E-value=1.1e+02 Score=34.08 Aligned_cols=50 Identities=26% Similarity=0.244 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045956 19 ISREALLEKVSQERELRNYARRATAS--AIFIQSVWRCYSVTKKVAVQLQEEWVA 71 (1150)
Q Consensus 19 ~~r~~lL~ka~~eRe~R~~~rrr~~a--Ai~IQa~vRg~l~rk~~~~~~r~efD~ 71 (1150)
+.|++|++--...+|.+...|||..+ ...||+|+|. ||++++.+..-.-.
T Consensus 50 ~~rd~ll~lKe~v~eLqsalRRr~~~~~~~~i~sy~~~---rKk~kK~i~K~~~~ 101 (231)
T PF03087_consen 50 TFRDALLQLKEHVQELQSALRRRDDGSIESEIASYIRS---RKKAKKEIAKLLRS 101 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 47899999999999999999999944 3445555554 66777766655443
No 25
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=23.09 E-value=1.1e+02 Score=39.01 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=21.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045956 39 RRATASAIFIQSVWRCYSVTKKVAVQLQEEW 69 (1150)
Q Consensus 39 rrr~~aAi~IQa~vRg~l~rk~~~~~~r~ef 69 (1150)
|+=..=|-.||+.||+|++||+.- .+|+|=
T Consensus 693 r~~d~~A~~IQkAWRrfv~rrky~-k~ree~ 722 (1106)
T KOG0162|consen 693 RKWDGMARRIQKAWRRFVARRKYE-KMREEA 722 (1106)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 444567888999999999999543 344443
Done!