Query 045956
Match_columns 1150
No_of_seqs 382 out of 1486
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:30:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h1d_A E3 ubiquitin-protein li 100.0 6.9E-89 2.4E-93 790.4 31.0 384 738-1149 14-404 (405)
2 1zvd_A SMAD ubiquitination reg 100.0 8E-88 2.7E-92 779.0 32.8 371 749-1150 3-380 (380)
3 2oni_A E3 ubiquitin-protein li 100.0 6.2E-87 2.1E-91 773.8 30.6 374 739-1143 11-392 (392)
4 1nd7_A WW domain-containing pr 100.0 4E-86 1.4E-90 763.9 35.7 366 749-1145 3-374 (374)
5 3olm_A E3 ubiquitin-protein li 100.0 5.1E-86 1.8E-90 773.6 31.8 371 746-1149 51-428 (429)
6 1c4z_A E6AP, ubiquitin-protein 100.0 9.1E-86 3.1E-90 756.3 28.5 348 780-1150 4-358 (358)
7 3pt3_A E3 ubiquitin-protein li 100.0 4.8E-35 1.6E-39 283.8 6.4 110 1025-1149 2-117 (118)
8 1n2d_C IQ2 and IQ3 motifs from 96.7 0.0015 5.2E-08 52.9 4.5 23 39-61 25-47 (48)
9 2ix7_C Myosin-5A; contractIle 96.2 0.012 4.2E-07 49.5 7.4 42 24-65 10-51 (58)
10 2ix7_C Myosin-5A; contractIle 95.4 0.0097 3.3E-07 50.1 3.6 26 40-65 3-28 (58)
11 1n2d_C IQ2 and IQ3 motifs from 94.9 0.022 7.5E-07 46.0 4.1 23 43-65 4-26 (48)
12 2kxw_B Sodium channel protein 94.4 0.014 4.8E-07 41.7 1.6 21 39-59 3-23 (27)
13 2l53_B CAM, voltage-gated sodi 93.8 0.031 1E-06 41.3 2.3 23 39-61 3-25 (31)
14 3gn4_A Myosin-VI; unconvention 93.4 0.05 1.7E-06 54.3 3.9 33 36-68 39-71 (148)
15 2bl0_A Major plasmodial myosin 83.8 1.1 3.7E-05 38.3 4.4 25 43-67 5-29 (63)
16 1wdc_A Scallop myosin; calcium 83.3 1.2 4.2E-05 38.0 4.6 25 43-67 7-31 (64)
17 1w7j_A Myosin VA; motor protei 81.2 1.2 4E-05 56.2 5.2 28 39-66 765-792 (795)
18 4dck_A Sodium channel protein 78.0 1.5 5.2E-05 44.8 3.9 25 39-63 127-151 (168)
19 1kk8_A Myosin heavy chain, str 77.0 2.5 8.5E-05 53.5 6.4 28 39-66 776-803 (837)
20 1wdc_A Scallop myosin; calcium 74.7 4 0.00014 34.7 5.1 32 29-60 19-50 (64)
21 2bl0_A Major plasmodial myosin 73.5 3.7 0.00013 34.9 4.6 31 30-60 18-48 (63)
22 2dfs_A Myosin-5A; myosin-V, in 72.5 4.7 0.00016 52.5 7.4 26 39-64 813-838 (1080)
23 2dfs_A Myosin-5A; myosin-V, in 70.9 5.7 0.00019 51.8 7.6 23 42-64 768-790 (1080)
24 1kk8_A Myosin heavy chain, str 62.6 5.4 0.00018 50.5 4.8 22 40-61 803-824 (837)
25 1i84_S Smooth muscle myosin he 55.6 10 0.00034 50.0 5.8 27 40-66 790-816 (1184)
26 1i84_S Smooth muscle myosin he 33.6 27 0.00093 46.0 4.6 22 39-60 815-836 (1184)
27 4anj_A Unconventional myosin-V 26.2 34 0.0012 44.3 3.5 37 31-68 764-800 (1052)
28 3dvk_B Voltage-dependent R-typ 21.4 35 0.0012 23.5 1.2 16 44-59 8-23 (23)
No 1
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=6.9e-89 Score=790.44 Aligned_cols=384 Identities=33% Similarity=0.600 Sum_probs=342.8
Q ss_pred ccccccCCcccChhhHHHHHHHHHhhhHHHhhhccCCCCCCCceeEEEecCCcHHHHHHHHHHcc-CCCCCCceEEEEec
Q 045956 738 GSVVTTTPHVFPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSL-GSRLKSSIHVSFVS 816 (1150)
Q Consensus 738 ~~il~~~Pf~~pFe~Rv~~F~~~i~~~k~~~~~~~~~~~~~~~~~~i~VrR~~lleDa~~~l~~~-~~~lk~~l~V~F~g 816 (1150)
..+|.+-|+ ++|+.|+++|+..+++.+. +..++.++++|||++|++||+++++.. +.++|++|+|+|+|
T Consensus 14 ~~~~~~~~~-~~f~~k~~~F~~~l~~~~~---------~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g 83 (405)
T 3h1d_A 14 LEVLFQGPH-MDFDVKRKYFRQELERLDE---------GLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEG 83 (405)
T ss_dssp CGGGGCSTT-SCHHHHHHHHHHHHHHHTT---------TCCCCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETT
T ss_pred hHHhhcCCC-cCHHHHHHHHHHHHHhhhc---------CCCCCceEEEEeCchHHHHHHHHHHccCHHHhhcceEEEECC
Confidence 367888898 6999999999987753211 112357899999999999999999974 56799999999999
Q ss_pred cCCCCCcccccCcchHHHHHHHHHhhcCCCCCceeecCCCCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCc
Q 045956 817 ECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYA 896 (1150)
Q Consensus 817 E~G~~EaGiD~GG~~REFf~~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~ 896 (1150)
| +|+|+||++||||+++++|+|+|+||||..+++++..|+|||.+...++++++|+|+|++||+|||+|.++|++
T Consensus 84 E-----~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flGrliG~Al~~~~~ld~~ 158 (405)
T 3h1d_A 84 E-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECY 158 (405)
T ss_dssp C-----CSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC-----CHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred C-----CCcCCChhHHHHHHHHHHHHhCCcccceeeccCCceeEeeCCccccChhHHHHHHHHhHHHHHHHhCCCccCCC
Confidence 8 68999999999999999999999999999998777778899988766889999999999999999999999999
Q ss_pred CcHHHHHHHhCCCCChhhhhhcCHHHHhhHHHHhhccCccccccceeeEEeccCCceeeEeccCCCCCcccccccHHHHH
Q 045956 897 FSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYV 976 (1150)
Q Consensus 897 F~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI 976 (1150)
||++|||+|+|++++++||+++||++|++|++|++++.+-.+++++|+++.+.+|...++||+|||++|+||++||.+||
T Consensus 159 F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV 238 (405)
T 3h1d_A 159 FTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYV 238 (405)
T ss_dssp ECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSCGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHH
T ss_pred ccHHHHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCChhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999997643222357888888788898889999999999999999999999
Q ss_pred HHHHHHHHhhchHHHHHHHHhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHH
Q 045956 977 HAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVV 1056 (1150)
Q Consensus 977 ~~~~~~~l~~~i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl 1056 (1150)
+++++|+++++++.|++||++||++|||.++|++|+|+||+.+||| .++||+++|++||.|. ||+++|++|+|||+|+
T Consensus 239 ~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G-~~~id~~dl~~~t~y~-gy~~~~~~i~~FW~v~ 316 (405)
T 3h1d_A 239 HLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISG-LPTIDIDDLKSNTEYH-KYQSNSIQIQWFWRAL 316 (405)
T ss_dssp HHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHC-CCCCCHHHHHHTEEEE-SSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCC-CCCCCHHHHHhhCccc-CCCCCCchHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999 5799999999999997 7999999999999999
Q ss_pred hcCCHHHHhhcceeecCcCCCCCCCcccCCC-----cceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHH
Q 045956 1057 EGFEPKERCMLLKFVTSCSRAPLLGFKHLQP-----SFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSS 1131 (1150)
Q Consensus 1057 ~~fs~eer~~fLkFvTGssrlP~~Gf~~L~p-----~f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e 1131 (1150)
++||+|||++||+|||||+|+|++||+.++| +|+|++. +.++++||+||||||+|+||.|+|+|
T Consensus 317 ~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~~~f~i~~~-----------~~~~~~LP~a~TCfn~L~LP~Yss~e 385 (405)
T 3h1d_A 317 RSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRD-----------DRSTDRLPSAHTCFNQLDLPAYESFE 385 (405)
T ss_dssp HHSCHHHHHHHHHHHHSSSCCCTTCGGGCBCSSSBCCEEEEEE-----------CSCTTSCCEEEGGGTEEEEECCSSHH
T ss_pred HhCCHHHHHHHHHHHcCCCCCCCCccccccccCCCceEEEeeC-----------CCCCCCCccceeccCEeECCCCCCHH
Confidence 9999999999999999999999999999985 7888763 33568999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCCccC
Q 045956 1132 TLKAKLLYAISS-NAGFEL 1149 (1150)
Q Consensus 1132 ~LreKLl~AI~~-~~GF~L 1149 (1150)
+||+||++||++ ++||+|
T Consensus 386 ~l~ekL~~AI~e~~~GFgl 404 (405)
T 3h1d_A 386 KLRHMLLLAIQEASEGFGL 404 (405)
T ss_dssp HHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhCCCCcCC
Confidence 999999999998 589997
No 2
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=8e-88 Score=778.96 Aligned_cols=371 Identities=33% Similarity=0.587 Sum_probs=340.0
Q ss_pred ChhhHHHHHHHHHhhhHHHhhhccCCCCCCCceeEEEecCCcHHHHHHHHHHcc-CCCCCCceEEEEeccCCCCCccccc
Q 045956 749 PFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSL-GSRLKSSIHVSFVSECGLPEAGLDY 827 (1150)
Q Consensus 749 pFe~Rv~~F~~~i~~~k~~~~~~~~~~~~~~~~~~i~VrR~~lleDa~~~l~~~-~~~lk~~l~V~F~gE~G~~EaGiD~ 827 (1150)
+|+.|+++|+..+.+. .+.++.++++|||++|++||++++... +.++|++|+|+|.|| +|+|+
T Consensus 3 ~f~~k~~~f~~~l~~~-----------~~~~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~F~gE-----~G~D~ 66 (380)
T 1zvd_A 3 DLVQKLKILRQELSQQ-----------QPQAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGE-----EGLDY 66 (380)
T ss_dssp SHHHHHHHHHHHHHHH-----------SCSSCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEEETTC-----CCSCH
T ss_pred ChHHHHHHHHHHHHhc-----------CCCCCceEEEEccCCHHHHHHHHHHccCHHHhcCceEEEECCC-----cCcCC
Confidence 7999999999876532 123457899999999999999999985 457999999999998 68999
Q ss_pred CcchHHHHHHHHHhhcCCCCCceeecCCCCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHhC
Q 045956 828 GGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLG 907 (1150)
Q Consensus 828 GG~~REFf~~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Llg 907 (1150)
|||+||||+++++|+|+|++|||..+++++..++|||.+...++++++|+|+|++||+|||+|.+++++|+++|||+|+|
T Consensus 67 GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg 146 (380)
T 1zvd_A 67 GGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLG 146 (380)
T ss_dssp HHHHHHHHHHHHHHHTSGGGSSEEEETTEEEEEEECTTGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcCCcCCCeeccCCCCeeeccCchhhcChHHHHHHHHhHHHHHHHHhCCceeCCcCCHHHHHHHhC
Confidence 99999999999999999999999998766667889998877778899999999999999999999999999999999999
Q ss_pred CCCChhhhhhcCHHHHhhHHHHhhccCcccc-ccceeeEEeccCCceeeEeccCCCCCcccccccHHHHHHHHHHHHHhh
Q 045956 908 RYSFLDELSTLDPELYRNLMYVKHYDGDVKE-LCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNR 986 (1150)
Q Consensus 908 ~~~~l~DL~~lDp~l~~sL~~Lk~~~~dved-L~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~l~~ 986 (1150)
.+++++||+++||++|++|++|++ +|+++ ++++|+++.+.+|...++||+|||++|+||++||.+||+++++|++++
T Consensus 147 ~~~~l~Dl~~~Dp~l~~sL~~ll~--~d~~~~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~ 224 (380)
T 1zvd_A 147 KSITLDDMELVDPDLHNSLVWILE--NDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLR 224 (380)
T ss_dssp CCCCSTTHHHHCHHHHHHHHHHHH--SCCTTTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHhCHHHHHHHHHHHh--CCccccccceeEEeeecCCcEeEEecCCCCCCCccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999975 46666 999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhcCCHHHHhh
Q 045956 987 QIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCM 1066 (1150)
Q Consensus 987 ~i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~fs~eer~~ 1066 (1150)
+++.|++||++||++|||.++|++|+|+||+.++|| .++||++||++||.|. ||+++|++|+|||+|+++||+|||++
T Consensus 225 ~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G-~~~id~~dl~~~t~y~-gy~~~~~~i~~FW~vv~~~s~eer~~ 302 (380)
T 1zvd_A 225 GIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICG-LGKIDVNDWKVNTRLK-HCTPDSNIVKWFWKAVEFFDEERRAR 302 (380)
T ss_dssp TTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHC-BSSCCHHHHHHTEEEE-SSCTTSHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCC-CCCCChhhhhhccEec-CCCCCcchhhhHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999999 6899999999999997 79999999999999999999999999
Q ss_pred cceeecCcCCCCCCCcccCCC-----cceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHH
Q 045956 1067 LLKFVTSCSRAPLLGFKHLQP-----SFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAI 1141 (1150)
Q Consensus 1067 fLkFvTGssrlP~~Gf~~L~p-----~f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI 1141 (1150)
||+|||||+|+|++||+.|+| +|+|++. +.++++||+||||||+|+||+|+|+|+||+||++||
T Consensus 303 fL~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~-----------~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI 371 (380)
T 1zvd_A 303 LLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQI-----------DACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAI 371 (380)
T ss_dssp HHHHHHSCSSBCTTCGGGCEETTEECCEEEEEC-----------CCCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCcchhhccccCCCCceEEEec-----------CCCCCCCCEEecCcCEEECCCCCCHHHHHHHHHHHH
Confidence 999999999999999999974 6999863 236789999999999999999999999999999999
Q ss_pred HcCCCccCC
Q 045956 1142 SSNAGFELS 1150 (1150)
Q Consensus 1142 ~~~~GF~LS 1150 (1150)
++++||+|.
T Consensus 372 ~~~~GF~l~ 380 (380)
T 1zvd_A 372 EETCGFAVE 380 (380)
T ss_dssp CC-------
T ss_pred HhCCCcCcC
Confidence 999999984
No 3
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=6.2e-87 Score=773.85 Aligned_cols=374 Identities=34% Similarity=0.616 Sum_probs=343.9
Q ss_pred cccccCCcccChhhHHHHHHHHHhhhHHHhhhccCCCCCCCceeEEEecCCcHHHHHHHHHHccC--CCCCCceEEEEec
Q 045956 739 SVVTTTPHVFPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLG--SRLKSSIHVSFVS 816 (1150)
Q Consensus 739 ~il~~~Pf~~pFe~Rv~~F~~~i~~~k~~~~~~~~~~~~~~~~~~i~VrR~~lleDa~~~l~~~~--~~lk~~l~V~F~g 816 (1150)
.++..+||.++|+.|+.+|+..+.+.+ ..+++++++|||++|++||++++.... ..+|++++|+|+|
T Consensus 11 ~~~~~~p~~~~f~~k~~~f~~~l~~~~-----------~~~~~~~l~V~R~~i~eds~~~l~~~~~~~~lk~~l~V~F~g 79 (392)
T 2oni_A 11 RENLYFQGSREFKQKYDYFRKKLKKPA-----------DIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFES 79 (392)
T ss_dssp ---CCSTTHHHHHHHHHHHHHHCCCCS-----------SSCSEEEEEECGGGHHHHHHHHHHHCSCGGGGGSEEEEEEC-
T ss_pred hcccCCCccccHHHHHHHHHHHHhccc-----------CCCCCEEEEEcCCchHHHHHHHHHccCcHHhhCccEEEEECC
Confidence 457789999999999999998765321 124589999999999999999999853 3479999999999
Q ss_pred cCCCCCcccccCcchHHHHHHHHHhhcCCCCCceeecCCCCcccccCccccc-ccchhHHHHHHhHHHHHHHhcCCcccC
Q 045956 817 ECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARY-LENGIQMFEFLGRVVGKALYEGILLDY 895 (1150)
Q Consensus 817 E~G~~EaGiD~GG~~REFf~~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~~~-~~~~l~~f~flGrllGkAL~~g~~l~l 895 (1150)
| +|+|+|||+||||+++++|+|+|+||||..+++++..++|||.+.. .++++++|+|+|++||+|||+|.++|+
T Consensus 80 E-----~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~~l~~f~flG~lig~Al~~~~~ld~ 154 (392)
T 2oni_A 80 E-----KGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDG 154 (392)
T ss_dssp C-----CSSCHHHHHHHHHHHHHHHHTCGGGSSEEESSTTCCCEEECTTHHHHCTTHHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred C-----ccccCCccHHHHHHHHHHHHcCcccCCceecCCCCceeccCCccccccHHHHHHHHhcchhhhhhhcCCcccCc
Confidence 8 6899999999999999999999999999998877778899998753 367899999999999999999999999
Q ss_pred cCcHHHHHHHhCCCCChhhhhhcCHHHHhhHHHHhhccCccccccceeeEEeccCCceeeEeccCCCCCcccccccHHHH
Q 045956 896 AFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQY 975 (1150)
Q Consensus 896 ~F~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eY 975 (1150)
+|+++|||+|+|.+++++||+++||++|++|++|+++ |+++++|+|+++.+.+|...++||+|||++|+||++||.+|
T Consensus 155 ~f~~~f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~--d~~~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eY 232 (392)
T 2oni_A 155 FFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILEN--DPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREY 232 (392)
T ss_dssp CBCHHHHHHHTTCCCCTHHHHTTCHHHHHHHHHHHHS--CCGGGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHH
T ss_pred cchHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHhcC--ChhHceeeEEEeeecCCceeEEecCCCCccCccchhhHHHH
Confidence 9999999999999999999999999999999999864 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchHHHHHHHHhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHH
Q 045956 976 VHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEV 1055 (1150)
Q Consensus 976 I~~~~~~~l~~~i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWev 1055 (1150)
|+++++|+++++++.|++||++||++|||.++|++|+|+||+.+||| .++||+++|++||+|.|||+++|++|+|||+|
T Consensus 233 v~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG-~~~id~~dl~~~t~y~~gy~~~~~~i~~FW~v 311 (392)
T 2oni_A 233 IDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCG-LGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKA 311 (392)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHC-CCCCCHHHHHHTCEEETTCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccHHhhhcCCHHHHHHhhcC-CCCCCHHHHhcceEECCCCCCCCchheeHHHH
Confidence 99999999999999999999999999999999999999999999999 67899999999999999999999999999999
Q ss_pred HhcCCHHHHhhcceeecCcCCCCCCCcccCC-----CcceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCH
Q 045956 1056 VEGFEPKERCMLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRS 1130 (1150)
Q Consensus 1056 l~~fs~eer~~fLkFvTGssrlP~~Gf~~L~-----p~f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~ 1130 (1150)
+++||+|||++||+|||||+|+|++||+.|+ ++|+|++. | ++++||+||||||+|+||+|+|+
T Consensus 312 v~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~-----------~-~~~~LP~a~TCfn~L~LP~Yss~ 379 (392)
T 2oni_A 312 VLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQW-----------G-SPEKLPRAHTCFNRLDLPPYETF 379 (392)
T ss_dssp HHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCCEEEEC-----------S-CTTSCCEEEGGGTEEEECCCSSH
T ss_pred HHhCCHHHHHHHHHHHhCCCCCCCcchhhhcccCCCCceEEEeC-----------C-CCCcCcEEEcccCEeECCCCCCH
Confidence 9999999999999999999999999999995 36999873 2 45799999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 045956 1131 STLKAKLLYAISS 1143 (1150)
Q Consensus 1131 e~LreKLl~AI~~ 1143 (1150)
|+||+||++||++
T Consensus 380 e~L~~kL~~AI~n 392 (392)
T 2oni_A 380 EDLREKLLMAVEN 392 (392)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999985
No 4
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=4e-86 Score=763.86 Aligned_cols=366 Identities=33% Similarity=0.591 Sum_probs=340.1
Q ss_pred ChhhHHHHHHHHHhhhHHHhhhccCCCCCCCceeEEEecCCcHHHHHHHHHHccC-CCCCCceEEEEeccCCCCCccccc
Q 045956 749 PFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLG-SRLKSSIHVSFVSECGLPEAGLDY 827 (1150)
Q Consensus 749 pFe~Rv~~F~~~i~~~k~~~~~~~~~~~~~~~~~~i~VrR~~lleDa~~~l~~~~-~~lk~~l~V~F~gE~G~~EaGiD~ 827 (1150)
+|+.|+.+|+..+++. ..+++++++|||++|++||++++.... .+++++++|+|.|| +|+|+
T Consensus 3 ~f~~k~~~f~~~~~~~------------~~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~F~gE-----~G~D~ 65 (374)
T 1nd7_A 3 GFRWKLAHFRYLCQSN------------ALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGE-----EGLDY 65 (374)
T ss_dssp THHHHHHHHHHHHHHT------------CCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTT-----CCCCC
T ss_pred ChHHHHHHHHHHHhhc------------CCCCCeEEEECCCCHHHHHHHHHHhcCHHhccceEEEEECCC-----CCcCC
Confidence 7999999999866421 123579999999999999999999854 57999999999998 68999
Q ss_pred CcchHHHHHHHHHhhcCCCCCceeecCCCCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHhC
Q 045956 828 GGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLG 907 (1150)
Q Consensus 828 GG~~REFf~~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Llg 907 (1150)
|||+||||+++++|+|+|++|||..+++++..++|||.+...++++++|+|+|++||+|||+|.+++++|+++|||+|+|
T Consensus 66 GG~~rEff~ll~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg 145 (374)
T 1nd7_A 66 GGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLS 145 (374)
T ss_dssp THHHHHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcCCccccccccCCCCceeccCCcccCCHHHHHHHHHHHHHHHHHHhcCCeeCCcCCHHHHHHHhC
Confidence 99999999999999999999999998777777889999876688899999999999999999999999999999999999
Q ss_pred CCCChhhhhhcCHHHHhhHHHHhhccCccccccceeeEEeccCCceeeEeccCCCCCcccccccHHHHHHHHHHHHHhhc
Q 045956 908 RYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQ 987 (1150)
Q Consensus 908 ~~~~l~DL~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~l~~~ 987 (1150)
.+++++||+++||++|++|++|++++.+..+++++|+++.+.+|...++||+|||++|+||.+||.+||+++++|+++++
T Consensus 146 ~~~~l~Dl~~~Dp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~ 225 (374)
T 1nd7_A 146 KKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRG 225 (374)
T ss_dssp CCCCHHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHhhHHHHHhhhhhccCChhhhhcceeEEEeeccCCceeeEecCCCCcCceeccccHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999765443358999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhcCCHHHHhhc
Q 045956 988 IFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCML 1067 (1150)
Q Consensus 988 i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~fs~eer~~f 1067 (1150)
++.|++||++||++|||.++|++|+|+||+.+||| .++||+++|++||.|.| |+++|++|+|||+|+++||+|||++|
T Consensus 226 i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G-~~~id~~dl~~~t~y~g-y~~~~~~i~~FW~vv~~~~~eer~~f 303 (374)
T 1nd7_A 226 VQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCG-MQEVDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRL 303 (374)
T ss_dssp THHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHC-CCCCCHHHHHHTEEEES-CCTTSHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhhhhhCCHHHHhcCCHHHHHHHhcC-CCCCCHHHHhhheEEcC-CCCCCcceeeHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999999999 57899999999999985 99999999999999999999999999
Q ss_pred ceeecCcCCCCCCCcccCCC-----cceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHHH
Q 045956 1068 LKFVTSCSRAPLLGFKHLQP-----SFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAIS 1142 (1150)
Q Consensus 1068 LkFvTGssrlP~~Gf~~L~p-----~f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI~ 1142 (1150)
|+|||||+|+|++||+.|+| +|+|++.+ ++++||+||||||+|+||.|+|+|+||+||++||+
T Consensus 304 L~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~------------~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~ 371 (374)
T 1nd7_A 304 LQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVG------------KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIE 371 (374)
T ss_dssp HHHHHSCSCCCTTCGGGCEETTEECCEEEECCS------------CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCcchhhccccCCCCceEEEeCC------------CCCcCCEEEcccCEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999963 79998732 45899999999999999999999999999999999
Q ss_pred cCC
Q 045956 1143 SNA 1145 (1150)
Q Consensus 1143 ~~~ 1145 (1150)
+++
T Consensus 372 ~~e 374 (374)
T 1nd7_A 372 ETE 374 (374)
T ss_dssp SCC
T ss_pred hcC
Confidence 874
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-86 Score=773.56 Aligned_cols=371 Identities=32% Similarity=0.587 Sum_probs=333.4
Q ss_pred cccChhhHHHHHHHHHhhhHHHhhhccCCCCCCCceeEEEecCCcHHHHHHHHHHcc-CCCCCCceEEEEeccCCCCCcc
Q 045956 746 HVFPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSL-GSRLKSSIHVSFVSECGLPEAG 824 (1150)
Q Consensus 746 f~~pFe~Rv~~F~~~i~~~k~~~~~~~~~~~~~~~~~~i~VrR~~lleDa~~~l~~~-~~~lk~~l~V~F~gE~G~~EaG 824 (1150)
+--+|+.|..+|+.... ..+.++.++++|||++|+|||++++... +.++|++|+|+|+|| +|
T Consensus 51 y~~~~~~k~~~f~~~~~------------~~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~gE-----~G 113 (429)
T 3olm_A 51 YKRDFRRKVIYFRSQPA------------LRILPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGE-----EG 113 (429)
T ss_dssp HHHHHHHHHHHHHSSGG------------GSCCSSCEEEEEETTSHHHHHHHHHHHSCHHHHTSCEEEEEETT-----C-
T ss_pred ccccchHHHHHHHHHHh------------hcCCCCceEEEEecchhHHHHHHHHHhcChHhcCcceEEEECCC-----Cc
Confidence 66778889988874321 1123457899999999999999999874 467999999999998 68
Q ss_pred cccCcchHHHHHHHHHhhcCCCCCceeecCCCCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHH
Q 045956 825 LDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQK 904 (1150)
Q Consensus 825 iD~GG~~REFf~~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~ 904 (1150)
+|+|||+||||+++++|+|+|+||||..+++++..++|||.+...++++++|+|+|++||+|||+|.+++++|+++|||+
T Consensus 114 ~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~ 193 (429)
T 3olm_A 114 LDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKM 193 (429)
T ss_dssp -------CHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHcCccCCCceeeCCCCeeEeeCCcccCCHHHHHHHHHHHHHHHHHHhcCCccCCCcCHHHHHh
Confidence 99999999999999999999999999998877778899999877788999999999999999999999999999999999
Q ss_pred HhCCCCChhhhhhcCHHHHhhHHHHhhccCcccc-ccceeeEEeccCCceeeEeccCCCCCcccccccHHHHHHHHHHHH
Q 045956 905 LLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKE-LCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYK 983 (1150)
Q Consensus 905 Llg~~~~l~DL~~lDp~l~~sL~~Lk~~~~dved-L~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~ 983 (1150)
|+|.+++++||+++||++|++|++|++ +|+++ ++++|+++.+.+|...++||+|||++|+||++||.+||+++++|+
T Consensus 194 Llg~~~~l~Dl~~~Dp~l~~sL~~ll~--~d~~~~l~l~F~~~~~~~g~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~ 271 (429)
T 3olm_A 194 MLRKKVVLQDMEGVDAEVYNSLNWMLE--NSIDGVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWR 271 (429)
T ss_dssp HTTCCCCHHHHHHHCHHHHHHHHHHTT--SCCTTTCCCBSEEEEEETTEEEEEESSTTGGGSBCCTTTHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHhHHHHHHHHHHHh--CCHHHhhcCceEEEeccCCceeeEeccCCCcccccCchhHHHHHHHHHHHH
Confidence 999999999999999999999999985 46655 899999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhcCCHHH
Q 045956 984 LNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKE 1063 (1150)
Q Consensus 984 l~~~i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~fs~ee 1063 (1150)
++++++.|++||++||++|||.++|++|+|+||+.|||| .++||++||++||.|. ||+++|++|+|||+|+++||+||
T Consensus 272 l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G-~~~id~~dl~~~t~y~-Gy~~~~~~I~~FW~vv~~~s~ee 349 (429)
T 3olm_A 272 IVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGG-IAEIDIEDWKKHTDYR-GYQESDEVIQWFWKCVSEWDNEQ 349 (429)
T ss_dssp HTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTC-BCCCCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHH
T ss_pred HHHhHHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcC-CCCCCHHHHHHhcccc-CCCCCchHHHHHHHHHHhCCHHH
Confidence 999999999999999999999999999999999999999 6889999999999997 79999999999999999999999
Q ss_pred HhhcceeecCcCCCCCCCcccCCC-----cceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHH
Q 045956 1064 RCMLLKFVTSCSRAPLLGFKHLQP-----SFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLL 1138 (1150)
Q Consensus 1064 r~~fLkFvTGssrlP~~Gf~~L~p-----~f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl 1138 (1150)
|++||+|||||+|+|++||+.|+| +|+|++. | ++++||+||||||+|+||.|+|+|+||+||+
T Consensus 350 r~~fL~FvTGs~rlP~~Gf~~L~~~~g~~~f~I~~~-----------~-~~~~LP~A~TCfN~L~LP~Yss~e~L~ekL~ 417 (429)
T 3olm_A 350 RARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKA-----------G-EVQQLPKSHTCFNRVDLPQYVDYDSMKQKLT 417 (429)
T ss_dssp HHHHHHHHHSCSCBCTTCGGGCEETTEECCEEEECC-----------S-CTTSCCEEEGGGTEEECCCCSSHHHHHHHHH
T ss_pred HHHHHhHhcCCCCCCCcccccccCcCCCceEEEeeC-----------C-CCCCCCccccccCEeECCCCCCHHHHHHHHH
Confidence 999999999999999999999985 6999862 2 4689999999999999999999999999999
Q ss_pred HHHHcCCCccC
Q 045956 1139 YAISSNAGFEL 1149 (1150)
Q Consensus 1139 ~AI~~~~GF~L 1149 (1150)
+||++++||++
T Consensus 418 ~AI~~~~GFg~ 428 (429)
T 3olm_A 418 LAVEETIGFGQ 428 (429)
T ss_dssp HHHHHTC----
T ss_pred HHHHcCCCCCC
Confidence 99999999985
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=9.1e-86 Score=756.35 Aligned_cols=348 Identities=34% Similarity=0.637 Sum_probs=319.8
Q ss_pred ceeEEEecCCcHHHHHHHHHHc----cCCCCCCceEEEEeccCCCCCcccccCcchHHHHHHHHHhhcCCCCCceeecCC
Q 045956 780 RSIEIVVRRGHIVEDGFRQLNS----LGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTST 855 (1150)
Q Consensus 780 ~~~~i~VrR~~lleDa~~~l~~----~~~~lk~~l~V~F~gE~G~~EaGiD~GG~~REFf~~l~~elf~p~~gLF~~t~~ 855 (1150)
+.++++|||++|++||+++++. .+.++|++|+|+|+|| +|+|+|||+||||+++++|+|+|++|||..+++
T Consensus 4 ~~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~gE-----~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~ 78 (358)
T 1c4z_A 4 PYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGE-----QGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDES 78 (358)
T ss_dssp CSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTC-----CCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETT
T ss_pred CeEEEEEcCCcHHHHHHHHHHHHhccCHHHhcCceEEEECCC-----cCcCCCccHHHHHHHHHHHHcCCcCCceeecCC
Confidence 4688999999999999999864 2457899999999998 689999999999999999999999999999865
Q ss_pred CCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHhCCCCChhhhhhcCHHHHhhHHHHhhccCc
Q 045956 856 SDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGD 935 (1150)
Q Consensus 856 ~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~Lk~~~~d 935 (1150)
+ ..++|||.+.. ..++|+|+|++||+|||+|.+++++||++|||+|+|.+++++||+++||++|++|++|+++++|
T Consensus 79 ~-~~~~~np~s~~---~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~d 154 (358)
T 1c4z_A 79 T-KLFWFNPSSFE---TEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGN 154 (358)
T ss_dssp T-TEEEECTTCCS---CHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCSC
T ss_pred C-CeEeeCCcccc---chHHHHhHHHHHHHHHHCCCCcCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCc
Confidence 4 56788887642 3579999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccc-ccceeeEEe-ccCCceeeEeccCCCCCcccccccHHHHHHHHHHHHHhhchHHHHHHHHhhcccccCccccc-CCC
Q 045956 936 VKE-LCLDFTVTE-ESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLK-LFN 1012 (1150)
Q Consensus 936 ved-L~L~Ftv~~-~~~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~aFr~Gf~~Vip~~~L~-lFs 1012 (1150)
+++ ++++|+++. +.+|...++||+|||++|+||.+||.+||+++++|+++++++.|++||++||++|+|..+|. +|+
T Consensus 155 ~~~~l~ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~ 234 (358)
T 1c4z_A 155 VEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFR 234 (358)
T ss_dssp HHHHTCCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSS
T ss_pred hhhhccceEEEeccccCCCeeeeecCCCCcccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCC
Confidence 865 999999984 77999999999999999999999999999999999999999999999999999999999996 899
Q ss_pred HHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhcCCHHHHhhcceeecCcCCCCCCCcccCCCcceee
Q 045956 1013 ASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIH 1092 (1150)
Q Consensus 1013 ~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~fs~eer~~fLkFvTGssrlP~~Gf~~L~p~f~I~ 1092 (1150)
|+||+.++|| .++||+++|++||+|.|||+++|++|+|||+|+++||+|||++||+|||||+|+|++||+.++ |+|+
T Consensus 235 ~~ELe~li~G-~~~id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l~--~~I~ 311 (358)
T 1c4z_A 235 PEEIELLICG-SRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLK--MIIA 311 (358)
T ss_dssp THHHHHHHHC-BCCCCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGGC--CEEE
T ss_pred HHHHHHHhhc-ccCCCHHHHHHHceeCCCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCcccce--eeee
Confidence 9999999999 678999999999999999999999999999999999999999999999999999999999984 8888
Q ss_pred eeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHHHcCCCccCC
Q 045956 1093 KVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 1150 (1150)
Q Consensus 1093 ~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI~~~~GF~LS 1150 (1150)
+. |.++++||+||||||+|+||+|+|+|+||+||++||++++||+|+
T Consensus 312 ~~-----------~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GFgl~ 358 (358)
T 1c4z_A 312 KN-----------GPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 358 (358)
T ss_dssp EE-----------EESCSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHHHC------
T ss_pred cC-----------CCCCCCCeEEEccCCEeECCCCCCHHHHHHHHHHHHHhCCCCCcC
Confidence 73 335689999999999999999999999999999999999999984
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=100.00 E-value=4.8e-35 Score=283.76 Aligned_cols=110 Identities=35% Similarity=0.514 Sum_probs=79.3
Q ss_pred CccChhhhhhcccccCCCCCCC----hHHHHHHHHHhcCCHHHHhhcceeecCcCCCCC--CCcccCCCcceeeeeccCC
Q 045956 1025 HDIDVDDLRKNTRYTGGYSEGS----RTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPL--LGFKHLQPSFTIHKVACDS 1098 (1150)
Q Consensus 1025 ~~iD~~dLk~~t~Y~gGy~~~~----~~I~~FWevl~~fs~eer~~fLkFvTGssrlP~--~Gf~~L~p~f~I~~~~~d~ 1098 (1150)
+-||++||++||+|.|+|++++ ++|+|||+|+++|++|||++||+|||||+|+|+ +||+.+ |+|+|+.
T Consensus 2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l-~~~~i~~----- 75 (118)
T 3pt3_A 2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRP----- 75 (118)
T ss_dssp ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC-------------CEEEEES-----
T ss_pred CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccC-CcEEEEC-----
Confidence 5699999999999999998887 999999999999999999999999999999999 899998 7888863
Q ss_pred ccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHHHcCCCccC
Q 045956 1099 SLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 1149 (1150)
Q Consensus 1099 ~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI~~~~GF~L 1149 (1150)
.++++||+||||||+|+||.|+|+|+||+||++||++ +|||+
T Consensus 76 --------~~~~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~-~gfGf 117 (118)
T 3pt3_A 76 --------PDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT-KNFGF 117 (118)
T ss_dssp --------CCTTSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC-------
T ss_pred --------CCCCCCccceehhceeECCCCCCHHHHHHHHHHHHHh-CCcCC
Confidence 2568999999999999999999999999999999997 99986
No 8
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0015 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=18.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Q 045956 39 RRATASAIFIQSVWRCYSVTKKV 61 (1150)
Q Consensus 39 rrr~~aAi~IQa~vRg~l~rk~~ 61 (1150)
+++++||++||++||||++|+..
T Consensus 25 ~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 25 EMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHhh
Confidence 34567999999999999999864
No 9
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=96.19 E-value=0.012 Score=49.48 Aligned_cols=42 Identities=19% Similarity=0.071 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 045956 24 LLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKKVAVQL 65 (1150)
Q Consensus 24 lL~ka~~eRe~R~~~rrr~~aAi~IQa~vRg~l~rk~~~~~~ 65 (1150)
.+|+.=.--..|..-++...|||.||++||||++|+++....
T Consensus 10 ~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r 51 (58)
T 2ix7_C 10 RIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLR 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444556666666679999999999999999887643
No 10
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=95.42 E-value=0.0097 Score=50.13 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Q 045956 40 RATASAIFIQSVWRCYSVTKKVAVQL 65 (1150)
Q Consensus 40 rr~~aAi~IQa~vRg~l~rk~~~~~~ 65 (1150)
+...||+.||+.||||++|+++.+.-
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r 28 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQ 28 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999987643
No 11
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.022 Score=46.00 Aligned_cols=23 Identities=9% Similarity=0.310 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 045956 43 ASAIFIQSVWRCYSVTKKVAVQL 65 (1150)
Q Consensus 43 ~aAi~IQa~vRg~l~rk~~~~~~ 65 (1150)
.|||.||+.||||++|+.+....
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~ 26 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEM 26 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999987644
No 12
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=94.44 E-value=0.014 Score=41.75 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHH
Q 045956 39 RRATASAIFIQSVWRCYSVTK 59 (1150)
Q Consensus 39 rrr~~aAi~IQa~vRg~l~rk 59 (1150)
++.+-||++||+.||+|+.++
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999875
No 13
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=93.79 E-value=0.031 Score=41.27 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Q 045956 39 RRATASAIFIQSVWRCYSVTKKV 61 (1150)
Q Consensus 39 rrr~~aAi~IQa~vRg~l~rk~~ 61 (1150)
++.+-||++||.-||+|+.++.+
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678999999999999998753
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=93.43 E-value=0.05 Score=54.33 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=27.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045956 36 NYARRATASAIFIQSVWRCYSVTKKVAVQLQEE 68 (1150)
Q Consensus 36 ~~~rrr~~aAi~IQa~vRg~l~rk~~~~~~r~e 68 (1150)
+--.=|.+|+|+||+.||||++|++.+-+++.-
T Consensus 39 nKI~yR~~~~i~iQktvR~~L~rkkhkPRi~g~ 71 (148)
T 3gn4_A 39 NKIKYRAEACIKMQKTIRMWLCKRRHKPRIDGL 71 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 334457789999999999999999999887654
No 15
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=83.77 E-value=1.1 Score=38.27 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 045956 43 ASAIFIQSVWRCYSVTKKVAVQLQE 67 (1150)
Q Consensus 43 ~aAi~IQa~vRg~l~rk~~~~~~r~ 67 (1150)
..++.|||..|||++|+.+++.+.+
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~ 29 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREK 29 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888887775544
No 16
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=83.26 E-value=1.2 Score=37.96 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 045956 43 ASAIFIQSVWRCYSVTKKVAVQLQE 67 (1150)
Q Consensus 43 ~aAi~IQa~vRg~l~rk~~~~~~r~ 67 (1150)
..++.|||.+|||++|+.+++...+
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~ 31 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQ 31 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888877775444
No 17
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=81.21 E-value=1.2 Score=56.17 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=23.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045956 39 RRATASAIFIQSVWRCYSVTKKVAVQLQ 66 (1150)
Q Consensus 39 rrr~~aAi~IQa~vRg~l~rk~~~~~~r 66 (1150)
++..++|+.|||.||||++||++++..+
T Consensus 765 ~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 765 DKLRAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999988543
No 18
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=78.04 E-value=1.5 Score=44.80 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH
Q 045956 39 RRATASAIFIQSVWRCYSVTKKVAV 63 (1150)
Q Consensus 39 rrr~~aAi~IQa~vRg~l~rk~~~~ 63 (1150)
++.+.||+.||+.||+|+.|+..++
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 4667899999999999999888776
No 19
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=77.05 E-value=2.5 Score=53.53 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=22.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045956 39 RRATASAIFIQSVWRCYSVTKKVAVQLQ 66 (1150)
Q Consensus 39 rrr~~aAi~IQa~vRg~l~rk~~~~~~r 66 (1150)
++-.++|+.|||.||||++|+++++...
T Consensus 776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~~~ 803 (837)
T 1kk8_A 776 ERLSKIISMFQAHIRGYLIRKAYKKLQD 803 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999999999999987654
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=74.67 E-value=4 Score=34.73 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 045956 29 SQERELRNYARRATASAIFIQSVWRCYSVTKK 60 (1150)
Q Consensus 29 ~~eRe~R~~~rrr~~aAi~IQa~vRg~l~rk~ 60 (1150)
..+|.+-....++..|+..||+.+|+|+.++.
T Consensus 19 ~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 19 YLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34555555566667788899999999999864
No 21
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=73.47 E-value=3.7 Score=34.85 Aligned_cols=31 Identities=35% Similarity=0.296 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 045956 30 QERELRNYARRATASAIFIQSVWRCYSVTKK 60 (1150)
Q Consensus 30 ~eRe~R~~~rrr~~aAi~IQa~vRg~l~rk~ 60 (1150)
.+|.+-....++..|+..||+.+|+|+.++.
T Consensus 18 l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 18 VERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555555555567788899999999999863
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.52 E-value=4.7 Score=52.53 Aligned_cols=26 Identities=38% Similarity=0.436 Sum_probs=20.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH
Q 045956 39 RRATASAIFIQSVWRCYSVTKKVAVQ 64 (1150)
Q Consensus 39 rrr~~aAi~IQa~vRg~l~rk~~~~~ 64 (1150)
.|+.+||++||++||||++|+++.+.
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~l 838 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCM 838 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHH
Confidence 35678999999999999998876643
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=70.86 E-value=5.7 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 045956 42 TASAIFIQSVWRCYSVTKKVAVQ 64 (1150)
Q Consensus 42 ~~aAi~IQa~vRg~l~rk~~~~~ 64 (1150)
.+||+.||+.||||++|+++++.
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~ 790 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRM 790 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 35666677777777766665543
No 24
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=62.64 E-value=5.4 Score=50.54 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=18.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHH
Q 045956 40 RATASAIFIQSVWRCYSVTKKV 61 (1150)
Q Consensus 40 rr~~aAi~IQa~vRg~l~rk~~ 61 (1150)
+|..||+.||+.||||++||+.
T Consensus 803 ~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 803 DQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHcch
Confidence 3468999999999999999764
No 25
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=55.64 E-value=10 Score=50.03 Aligned_cols=27 Identities=30% Similarity=0.258 Sum_probs=22.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045956 40 RATASAIFIQSVWRCYSVTKKVAVQLQ 66 (1150)
Q Consensus 40 rr~~aAi~IQa~vRg~l~rk~~~~~~r 66 (1150)
+-..+|+.||+.||||++|+++.+..+
T Consensus 790 ~l~~~~~~iQ~~~Rg~l~R~~~~k~~~ 816 (1184)
T 1i84_S 790 KITDVIIAFQAQCRGYLARKAFAKRQQ 816 (1184)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999887543
No 26
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=33.62 E-value=27 Score=45.97 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=18.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHH
Q 045956 39 RRATASAIFIQSVWRCYSVTKK 60 (1150)
Q Consensus 39 rrr~~aAi~IQa~vRg~l~rk~ 60 (1150)
|++..||+.||+.||+|+.||.
T Consensus 815 ~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 815 QQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3356899999999999999975
No 27
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=26.17 E-value=34 Score=44.34 Aligned_cols=37 Identities=3% Similarity=-0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045956 31 ERELRNYARRATASAIFIQSVWRCYSVTKKVAVQLQEE 68 (1150)
Q Consensus 31 eRe~R~~~rrr~~aAi~IQa~vRg~l~rk~~~~~~r~e 68 (1150)
+.-|+...++..++|++||+ +|||++|++.++..+..
T Consensus 764 ~~LE~~r~~~~~~~~~~iq~-~r~~l~r~~~~k~~~~a 800 (1052)
T 4anj_A 764 AEFDQIMKSDPDHLAELVKR-VNHWLICSRWKKVQWCS 800 (1052)
T ss_dssp HHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
No 28
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=21.37 E-value=35 Score=23.54 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHH...
Q 045956 44 SAIFIQSVWRCYSVTK... 59 (1150)
Q Consensus 44 aAi~IQa~vRg~l~rk... 59 (1150)
||..||-+||.|..|+
T Consensus 8 A~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHhccC...
Confidence 7899999999998763
Done!