Query 045957
Match_columns 217
No_of_seqs 152 out of 1232
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:19:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1584 Sulfotransferase [Gene 100.0 1.3E-62 2.9E-67 410.0 16.8 204 3-208 23-296 (297)
2 PLN02164 sulfotransferase 100.0 3.4E-56 7.3E-61 385.1 17.7 204 4-207 64-344 (346)
3 PF00685 Sulfotransfer_1: Sulf 100.0 3.7E-30 7.9E-35 214.1 6.5 183 19-203 1-267 (267)
4 KOG3988 Protein-tyrosine sulfo 97.5 4.3E-05 9.2E-10 64.1 1.3 112 83-205 176-328 (378)
5 PF13469 Sulfotransfer_3: Sulf 96.3 0.0032 7E-08 49.3 2.7 19 21-39 2-21 (215)
6 PF03567 Sulfotransfer_2: Sulf 92.3 0.031 6.7E-07 45.5 -0.6 77 19-102 8-96 (253)
7 KOG3704 Heparan sulfate D-gluc 91.1 0.17 3.7E-06 42.7 2.5 124 82-209 188-360 (360)
8 PF06990 Gal-3-0_sulfotr: Gala 88.8 0.51 1.1E-05 42.3 3.9 83 20-103 68-167 (402)
9 PF09037 Sulphotransf: Stf0 su 88.4 0.36 7.8E-06 40.3 2.5 24 22-45 2-25 (245)
10 KOG3703 Heparan sulfate N-deac 88.2 1.9 4.2E-05 40.0 7.1 135 20-157 596-774 (873)
11 KOG3922 Sulfotransferases [Pos 87.4 0.8 1.7E-05 39.3 3.9 80 22-102 81-178 (361)
12 COG4424 Uncharacterized protei 87.2 0.57 1.2E-05 38.0 2.8 28 20-47 6-33 (250)
13 PF13469 Sulfotransfer_3: Sulf 86.7 0.11 2.5E-06 40.3 -1.4 19 82-101 126-144 (215)
14 KOG4651 Chondroitin 6-sulfotra 60.6 1.6 3.4E-05 38.1 -1.6 81 17-103 78-165 (324)
15 PF13671 AAA_33: AAA domain; P 36.2 34 0.00073 25.0 2.5 20 22-41 2-22 (143)
16 COG1490 Dtd D-Tyr-tRNAtyr deac 28.8 66 0.0014 24.5 2.9 36 172-207 86-121 (145)
17 TIGR03715 KxYKxGKxW KxYKxGKxW 28.8 47 0.001 17.9 1.6 14 29-42 8-21 (29)
18 PF11347 DUF3148: Protein of u 28.4 1.1E+02 0.0023 20.0 3.4 38 65-102 13-51 (63)
19 PRK06851 hypothetical protein; 27.1 69 0.0015 28.5 3.3 27 19-45 30-57 (367)
20 PF00158 Sigma54_activat: Sigm 26.3 98 0.0021 24.0 3.7 42 3-44 6-47 (168)
21 PRK15117 ABC transporter perip 24.0 37 0.00081 27.6 0.9 28 173-201 75-103 (211)
22 PRK04290 30S ribosomal protein 23.7 35 0.00076 25.1 0.6 17 22-38 5-21 (115)
23 TIGR00073 hypB hydrogenase acc 23.4 83 0.0018 25.0 2.9 23 21-43 24-47 (207)
24 PF08675 RNA_bind: RNA binding 23.3 51 0.0011 22.9 1.4 28 14-44 3-30 (87)
25 PF12197 lci: Bacillus cereus 23.2 19 0.00041 21.9 -0.7 16 19-34 8-23 (45)
26 cd00227 CPT Chloramphenicol (C 22.8 86 0.0019 24.1 2.8 21 21-41 4-25 (175)
27 PF08477 Miro: Miro-like prote 21.9 94 0.002 21.6 2.7 19 22-40 2-21 (119)
28 PRK10363 cpxP periplasmic repr 21.8 75 0.0016 25.0 2.2 23 179-201 120-142 (166)
29 PF13481 AAA_25: AAA domain; P 21.5 84 0.0018 24.2 2.5 33 13-45 26-59 (193)
30 COG2125 RPS6A Ribosomal protei 21.1 30 0.00064 25.5 -0.2 21 20-40 3-23 (120)
31 PF07131 DUF1382: Protein of u 21.1 80 0.0017 20.3 1.8 30 184-214 5-38 (61)
32 cd01862 Rab7 Rab7 subfamily. 20.9 85 0.0018 23.3 2.4 20 21-40 2-22 (172)
33 PF10589 NADH_4Fe-4S: NADH-ubi 20.7 67 0.0015 19.3 1.4 17 29-45 23-39 (46)
34 PF13207 AAA_17: AAA domain; P 20.4 1.3E+02 0.0028 21.1 3.1 23 22-44 2-24 (121)
35 COG1102 Cmk Cytidylate kinase 20.1 1.1E+02 0.0023 24.3 2.7 23 22-44 3-25 (179)
No 1
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=100.00 E-value=1.3e-62 Score=409.98 Aligned_cols=204 Identities=43% Similarity=0.883 Sum_probs=173.8
Q ss_pred hhhhhHHhhhhcCccCCCCEEEeccCCcchhhHHHHHHHHhhCCCCCC-CCCCccccCCCCc------------------
Q 045957 3 VSVNGVISFRKHFQAEDSDIILAPYPKSGTTWIKALTFTIVNRSRYAI-EDSPLLTASPHQL------------------ 63 (217)
Q Consensus 3 ~~~~~~~~~~~~~~~r~~dv~i~syPKSGtTWl~~il~~~~~~~~~~~-~~~p~~e~~~~~~------------------ 63 (217)
.+++++....++|++||+||+||||||||||||++|+.+|.++++.+. .+.|+++.+|+..
T Consensus 23 ~~~~~~~~~~~~Fq~r~dDiiiaTyPKsGTTWlkel~~~i~~~~d~~~~~~~pL~~~~P~~e~p~~e~~~~~~~~~~~l~ 102 (297)
T KOG1584|consen 23 KFLQALLRVQKHFQARPDDVIIATYPKSGTTWLQELTFLILNRGDFEKAKRHPLLERNPHLEVPFLELQLYGNDSAPDLP 102 (297)
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEecCCCchHHHHHHHHHHHcCCCcccccCCchhhcCCceeecccccccccccccccCC
Confidence 355667777777999999999999999999999999999999988765 4466666555311
Q ss_pred cc-eEEeeCCCCCCCcchhcccceEEEEeeCCCceEEEeeccC-----CCCCCCHHHHHHHhcCCccccCChHHHHHHHH
Q 045957 64 KD-FFSTHVPYASVPSSILESNCRIVYICTNPLGQFIARRNNL-----EPSQLELDEAFERTCNGIHVFGPIWEHVLGYW 137 (217)
Q Consensus 64 ~p-~~ktH~~~~~~p~~l~~~~~k~I~i~RdPrDv~vS~~~~~-----~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~w~ 137 (217)
.| +++||+|+.++|+++++.+|||||++|||+||+||+||.. .+.++++++|++.||+|...+|+||+||++||
T Consensus 103 SPRl~kTHlP~~lLp~s~~~~~cKvVYv~RNpKD~~VSy~hf~~~~~~~~~~~~~e~~fe~F~~G~~~~Gp~~dHVl~~W 182 (297)
T KOG1584|consen 103 SPRLFKTHLPFQLLPESLKESKCKVVYVCRNPKDVLVSYYHFNRMLKTQPGPGTFEEFFESFCNGVVPYGPWWDHVLGYW 182 (297)
T ss_pred CCcceeccCChhhcchhhhcCCCcEEEEecCccceeeeHHHHHhhhccCCCCCcHHHHHHHHhCCcCCcCChHHHHHHHH
Confidence 14 9999999999999999999999999999999999995432 34556799999999999999999999999999
Q ss_pred HhhhcCCCcEEEEeehhhcc----------ccc-----------------------C--------CCC---CCCccceee
Q 045957 138 KASIEQPGKILFLKYENLGK----------PLV-----------------------Y--------PIL---PGNSLFLRK 173 (217)
Q Consensus 138 ~~~~~~~~~vl~i~YEdL~~----------~FV-----------------------~--------~~~---~~~~~f~Rk 173 (217)
.. +++++||+++||||++ +|+ . +.+ ...+.||||
T Consensus 183 ~~--~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~Ee~~~~~~~~~~~~~~~n~l~nle~n~~~~~~~~~~~F~RK 260 (297)
T KOG1584|consen 183 EL--EDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKEEEDKGVVHLSFELCSLNPLSNLEVNKTEKLLHKISPFFRK 260 (297)
T ss_pred Hh--cCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHHHHhhhhHHHHHHHHhhccccCceecccccccccchhhhcC
Confidence 95 4678999999999999 341 0 111 233789999
Q ss_pred cccCCCccCCcHHHHHHHHHHHHhHcCC-CCccccc
Q 045957 174 GEVGNWKNYLSPSMSQHLQKVVEEKLDG-PSLTFKT 208 (217)
Q Consensus 174 G~vGdWk~~fs~e~~~~~~~~~~~~l~~-~g~~f~~ 208 (217)
|+|||||||||+||+++||+.++++|++ +||+|.+
T Consensus 261 G~vGDWKn~~T~~~~ekfD~~~eekm~g~sgL~F~~ 296 (297)
T KOG1584|consen 261 GEVGDWKNYLTPEMNEKFDKIYEEKMEGCSGLKFRT 296 (297)
T ss_pred CCcccccccCCHHHHHHHHHHHHHHhcCCCCccccc
Confidence 9999999999999999999999999999 8999976
No 2
>PLN02164 sulfotransferase
Probab=100.00 E-value=3.4e-56 Score=385.13 Aligned_cols=204 Identities=41% Similarity=0.796 Sum_probs=171.3
Q ss_pred hhhhHHhhhhcCccCCCCEEEeccCCcchhhHHHHHHHHhhCCCCCC-----------CCCCccccCCC-----C----c
Q 045957 4 SVNGVISFRKHFQAEDSDIILAPYPKSGTTWIKALTFTIVNRSRYAI-----------EDSPLLTASPH-----Q----L 63 (217)
Q Consensus 4 ~~~~~~~~~~~~~~r~~dv~i~syPKSGtTWl~~il~~~~~~~~~~~-----------~~~p~~e~~~~-----~----~ 63 (217)
++++++++.++|++|++|||||||||||||||++|+.+|+++++++. ..+||+|.... + .
T Consensus 64 ~~~~~~~~~~~f~~r~~DV~laSyPKsGTTWlq~iv~~i~~~~~~~~~~~pl~~~~p~~~vP~lE~~~~~~~~~~~l~~~ 143 (346)
T PLN02164 64 LLEGLLHAQEFFQARPNDFLVCSYPKTGTTWLKALTFAIANRSRFDDSSNPLLKRNPHEFVPYIEIDFPFFPSVDVLKDK 143 (346)
T ss_pred hhHHHHHHHHcCCCCCCCEEEEcCCCchhHHHHHHHHHHHcCCCcccccCcccccCccccCCceecccCCCCchhhhccC
Confidence 46789999999999999999999999999999999999998655432 34788886311 1 1
Q ss_pred cc-eEEeeCCCCCCCcchhcccceEEEEeeCCCceEEEeeccC---C---CCCCCHHHHHHHhcCCccccCChHHHHHHH
Q 045957 64 KD-FFSTHVPYASVPSSILESNCRIVYICTNPLGQFIARRNNL---E---PSQLELDEAFERTCNGIHVFGPIWEHVLGY 136 (217)
Q Consensus 64 ~p-~~ktH~~~~~~p~~l~~~~~k~I~i~RdPrDv~vS~~~~~---~---~~~~~~~~~~~~~~~g~~~~g~~~~~~~~w 136 (217)
.| ++|||+|++++|+++.++++|+|||+|||+|++||+||+. . ....+++++++.||+|...+|+||+|+++|
T Consensus 144 ~PRlikTHlp~~~lP~~i~~~~~KiIyv~RnPkDv~VS~yhf~~~~~~~~~~~~s~ee~~e~f~~g~~~~G~y~dHv~~y 223 (346)
T PLN02164 144 GNTLFSTHIPYGLLPDSVVKSGCKMVYIWRDPKDTFISMWTFLHKERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGY 223 (346)
T ss_pred CCCeeEecCChhhCccccccCCceEEEEecCchhheeeHHHHHhhccccCCCCCCHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 24 9999999999999999999999999999999999996433 1 123689999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEeehhhcc----------ccc--------------------------C-----CCC---------CC
Q 045957 137 WKASIEQPGKILFLKYENLGK----------PLV--------------------------Y-----PIL---------PG 166 (217)
Q Consensus 137 ~~~~~~~~~~vl~i~YEdL~~----------~FV--------------------------~-----~~~---------~~ 166 (217)
|++..+.+++||+++||||++ +|+ . ..+ ..
T Consensus 224 w~~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~s~ee~~~~~v~~ive~~SFe~Mk~~e~n~~~~~~~~~~~~~~ 303 (346)
T PLN02164 224 WKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTAEEEEKGVVEKVVKLCSFETLKNLEANKGEKDREDRPAVYA 303 (346)
T ss_pred HHHhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCCchhhcchHHHHHHHHHCCHHHHhhhHhhcccccccccccccc
Confidence 998544566899999999999 331 0 000 13
Q ss_pred CccceeecccCCCccCCcHHHHHHHHHHHHhHcCCCCcccc
Q 045957 167 NSLFLRKGEVGNWKNYLSPSMSQHLQKVVEEKLDGPSLTFK 207 (217)
Q Consensus 167 ~~~f~RkG~vGdWk~~fs~e~~~~~~~~~~~~l~~~g~~f~ 207 (217)
++.|||||+||||||+||+||+++|+++++++|+++||.|-
T Consensus 304 ~~~FfRKG~vGdWkn~lt~e~~~r~d~~~~ekl~gsgl~~~ 344 (346)
T PLN02164 304 NSAYFRKGKVGDWQNYLTPEMAARIDGLMEEKFKGTGLLEH 344 (346)
T ss_pred CcceeeccCCCCCcccCCHHHHHHHHHHHHHHhcCCCCccc
Confidence 45799999999999999999999999999999999999973
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=99.96 E-value=3.7e-30 Score=214.11 Aligned_cols=183 Identities=24% Similarity=0.458 Sum_probs=133.2
Q ss_pred CCCEEEeccCCcchhhHHHHHHHHhhCCCCC----C------CCCCccccC----C-------------C--C------c
Q 045957 19 DSDIILAPYPKSGTTWIKALTFTIVNRSRYA----I------EDSPLLTAS----P-------------H--Q------L 63 (217)
Q Consensus 19 ~~dv~i~syPKSGtTWl~~il~~~~~~~~~~----~------~~~p~~e~~----~-------------~--~------~ 63 (217)
+.+|+|+|+||||||||+++|.......... . ...|+++.. | + . .
T Consensus 1 ~~~i~I~g~prSGTt~l~~lL~~h~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (267)
T PF00685_consen 1 PPPIFIVGAPRSGTTWLRELLNSHPDIFSFSPFKEPHFFNNRDYSPFLEWYRDFFPFRIKPQEHIPSFSHVESKIVRLRD 80 (267)
T ss_dssp TTSEEEEESTTSSHHHHHHHHHHHHTTTETHHHTSSHHTTTHHHSTBTTHHHHTSHEEGTTTEEEGGCTTTETHHHHHHC
T ss_pred CCCEEEECCCCCcHHHHHHHHHhCcccccccccccccccchhhhhhhhhhhhcccccccccccccccccccchhHHHHhh
Confidence 5799999999999999999999975432221 0 122333220 0 0 0 0
Q ss_pred c--c-eEEeeCCCCCCCcchhcccceEEEEeeCCCceEEEeeccC---C--CCCC-CHHHHHHHhcCCccccCChHHHHH
Q 045957 64 K--D-FFSTHVPYASVPSSILESNCRIVYICTNPLGQFIARRNNL---E--PSQL-ELDEAFERTCNGIHVFGPIWEHVL 134 (217)
Q Consensus 64 ~--p-~~ktH~~~~~~p~~l~~~~~k~I~i~RdPrDv~vS~~~~~---~--~~~~-~~~~~~~~~~~g~~~~g~~~~~~~ 134 (217)
. + +++||+++..++..+..+++|+|+++|||+|+++|.+++. . .... .++++.+.++.....++.|++++.
T Consensus 81 ~~~~~~~~~H~~~~~~~~~~~~~~~KiI~ivRdP~d~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (267)
T PF00685_consen 81 LPSPRFIKTHLPLDLLPKKLLFPNAKIIYIVRDPRDVIVSRYKHSWRSNPFSDPGQRFEEFVDWFLQPRLLYGSWADHLK 160 (267)
T ss_dssp SCSSEEEEE-S-GGGSHHHHHHTTEEEEEEE--HHHHHHHHHHHHHHBTTSTTHHSHHHHHHHHHHTTHSTTSCHHHHHH
T ss_pred ccCchhhhhccccccccccccccccccceecccccchhHHHHHHHHhcccccccchhhhhhhhhhhcccccccccccccc
Confidence 1 2 8999999887776655689999999999999999995432 1 1122 377888888877778899999999
Q ss_pred HHHHhhhcCCCcEEEEeehhhcc----------ccc------------------------CCCCC------CCccceeec
Q 045957 135 GYWKASIEQPGKILFLKYENLGK----------PLV------------------------YPILP------GNSLFLRKG 174 (217)
Q Consensus 135 ~w~~~~~~~~~~vl~i~YEdL~~----------~FV------------------------~~~~~------~~~~f~RkG 174 (217)
.||... .++++++|+||||++ +|+ ..... ....++|+|
T Consensus 161 ~~~~~~--~~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (267)
T PF00685_consen 161 SWLSSF--DRDNVLIIRYEDLVADPEKELKRICDFLGLPFSDEPLDKIVEKSSFDNMRSKEARNKSKLSDGSSSRFFRKG 238 (267)
T ss_dssp HHHHHT--TTSTEEEEEHHHHHHSHHHHHHHHHHHTTSS--HHHHHHHHHHTSHHHHHHETTTSSTTSCTTTTSTSSEET
T ss_pred chhhhh--ccchhhhhcchhhhhhhhHHHHHHHHHHhhccchhhhHHHHHhhhhhhhcccccccccccccCCcceeeeec
Confidence 999853 457999999999999 231 00111 247899999
Q ss_pred ccCCCccCCcHHHHHHHHHHHHhHcCCCC
Q 045957 175 EVGNWKNYLSPSMSQHLQKVVEEKLDGPS 203 (217)
Q Consensus 175 ~vGdWk~~fs~e~~~~~~~~~~~~l~~~g 203 (217)
.+|+||++||+|+++.|++++++.|+++|
T Consensus 239 ~~~~W~~~l~~e~~~~i~~~~~~~m~~~~ 267 (267)
T PF00685_consen 239 KSGRWKNELSPEQIDRIERICGDAMRELG 267 (267)
T ss_dssp -STGGGGTSBHHHHHHHHHHHHHHHTTSS
T ss_pred ccCcccccCCHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999987
No 4
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=4.3e-05 Score=64.15 Aligned_cols=112 Identities=9% Similarity=0.094 Sum_probs=65.7
Q ss_pred ccceEEEEeeCCCceEEEe-eccCCCCCCCHHHHHHHhcCCccccCChHHHH----HHHHHhhhcCCCcEEEEeehhhcc
Q 045957 83 SNCRIVYICTNPLGQFIAR-RNNLEPSQLELDEAFERTCNGIHVFGPIWEHV----LGYWKASIEQPGKILFLKYENLGK 157 (217)
Q Consensus 83 ~~~k~I~i~RdPrDv~vS~-~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~----~~w~~~~~~~~~~vl~i~YEdL~~ 157 (217)
||+|+++++||.|.++-|. -++..-...++.+|.+.+. .|-..+ ..+.+. ...+.+.+.||.|+.
T Consensus 176 PNAKfllMvRDgRAtVhSmIsRKVtIaGfdlssyr~c~t-------kWN~aie~M~~QC~~v---g~~~Cl~VyYEqLVl 245 (378)
T KOG3988|consen 176 PNAKFLLMVRDGRATVHSMISRKVTIAGFDLSSYRQCMT-------KWNQAIEVMYFQCMEV---GKKKCLKVYYEQLVL 245 (378)
T ss_pred CCceEEEEEecchHHHHHHHhccceeccccchHHHHHHH-------HHHHHHHHHHHHHHhc---cccchhHHHHHHHHh
Confidence 8999999999999999998 4555111223344333221 011111 111121 224677788888887
Q ss_pred ----------ccc----------------CCCCCC----------CccceeecccCCCccCCcHHHHHHHHHHHHhHcCC
Q 045957 158 ----------PLV----------------YPILPG----------NSLFLRKGEVGNWKNYLSPSMSQHLQKVVEEKLDG 201 (217)
Q Consensus 158 ----------~FV----------------~~~~~~----------~~~f~RkG~vGdWk~~fs~e~~~~~~~~~~~~l~~ 201 (217)
.|+ .+.|.+ ...-+.-+.--.|...++++..+.++.+. .-|+.
T Consensus 246 hPe~~mr~Il~FLdipw~d~vLhHedlIgk~~gVsLskvErSsdQVikpVNl~AlskWvg~ip~dvvrdma~iA-PmL~~ 324 (378)
T KOG3988|consen 246 HPEEWMRRILKFLDIPWSDAVLHHEDLIGKPGGVSLSKVERSSDQVIKPVNLEALSKWVGCIPEDVVRDMADIA-PMLAI 324 (378)
T ss_pred CHHHHHHHHHHHhCCCcHHHHHhHHHhcCCCCCCChhhhhccHhhhhccccHHHHHHHhccCCHHHHHHHHHHH-HHHHH
Confidence 341 122211 11233445556899999999999998764 56677
Q ss_pred CCcc
Q 045957 202 PSLT 205 (217)
Q Consensus 202 ~g~~ 205 (217)
+||.
T Consensus 325 LGYD 328 (378)
T KOG3988|consen 325 LGYD 328 (378)
T ss_pred hCCC
Confidence 7775
No 5
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=96.27 E-value=0.0032 Score=49.32 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=17.6
Q ss_pred CEEEeccCCcchhhHH-HHH
Q 045957 21 DIILAPYPKSGTTWIK-ALT 39 (217)
Q Consensus 21 dv~i~syPKSGtTWl~-~il 39 (217)
.|||++.||||||||. .|+
T Consensus 2 pvfI~G~~RSGTTlL~~~Ll 21 (215)
T PF13469_consen 2 PVFIVGMPRSGTTLLSRRLL 21 (215)
T ss_dssp CEEEECSTTSSHHHHH-HHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 6999999999999999 777
No 6
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=92.27 E-value=0.031 Score=45.49 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=35.2
Q ss_pred CCCEEEeccCCcchhhHHHHHHHHhhCCCCCC--CCC--CccccCCCCccceEEeeCCCCCC--------Ccchhcccce
Q 045957 19 DSDIILAPYPKSGTTWIKALTFTIVNRSRYAI--EDS--PLLTASPHQLKDFFSTHVPYASV--------PSSILESNCR 86 (217)
Q Consensus 19 ~~dv~i~syPKSGtTWl~~il~~~~~~~~~~~--~~~--p~~e~~~~~~~p~~ktH~~~~~~--------p~~l~~~~~k 86 (217)
...++.+..||||.|=+..++..+.+. .... ... .+....+ . ....|..+..+ +..+ + +..
T Consensus 8 ~~~i~f~~ipK~g~Ts~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 80 (253)
T PF03567_consen 8 KHKIIFCHIPKTGGTSLKSILRRLYGK-EFTKDNPSIPENWLHFKR--Y--CGWGHIEFRDLSELSRQEFDRIL-N-SYF 80 (253)
T ss_dssp --EEEE---SSSSHHHHHHHHHHHHHG-S---HHHHHHHH-GGG-S--E--EEEES-----GGGGT-SS----------E
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhhh-hhhccccccccccccccc--h--hhhhhHHHhHHhhcchhhccccc-c-ceE
Confidence 346889999999999999999988773 2111 000 0111000 0 11122211111 1111 1 468
Q ss_pred EEEEeeCCCceEEEee
Q 045957 87 IVYICTNPLGQFIARR 102 (217)
Q Consensus 87 ~I~i~RdPrDv~vS~~ 102 (217)
.+-++|||.+.+||.|
T Consensus 81 ~~t~vRdP~~R~vS~y 96 (253)
T PF03567_consen 81 KFTFVRDPVDRLVSAY 96 (253)
T ss_dssp EEEEE--HHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHH
Confidence 8999999999999995
No 7
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=0.17 Score=42.71 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=75.5
Q ss_pred cccceEEEEeeCCCceEEEeeccC---CCCCCCHHHHHHHhcC---C-------ccccCChHHHHHHHHHhhhcCCCcEE
Q 045957 82 ESNCRIVYICTNPLGQFIARRNNL---EPSQLELDEAFERTCN---G-------IHVFGPIWEHVLGYWKASIEQPGKIL 148 (217)
Q Consensus 82 ~~~~k~I~i~RdPrDv~vS~~~~~---~~~~~~~~~~~~~~~~---g-------~~~~g~~~~~~~~w~~~~~~~~~~vl 148 (217)
++..|.|+|+|||.-.++|-|.+. .+..-+++.. .|-. | .+..|-|..|+..|+... .-.+++
T Consensus 188 ~pd~KLivvvR~PvtRaiSDyTQt~sk~~~~P~fe~l--afkn~~~g~id~~w~ai~iglY~~Hle~WL~yF--pL~q~l 263 (360)
T KOG3704|consen 188 NPDTKLIVVVRDPVTRAISDYTQTLSKKPDIPTFEVL--AFKNRTAGLIDTSWKAIRIGLYAVHLENWLRYF--PLRQIL 263 (360)
T ss_pred CCCceEEEEEcCchhhhHHHHHHHHhcCCCCCceeee--eeecCccceeecchhhhhhhHHHHHHHHHHHhC--chhheE
Confidence 467899999999999999996433 1111222221 1111 1 134466888999998864 225899
Q ss_pred EEeehhhcc----------ccc------C--------CCC------CCCcccee-eccc-CCCccCCcHHHHHHHHHHHH
Q 045957 149 FLKYENLGK----------PLV------Y--------PIL------PGNSLFLR-KGEV-GNWKNYLSPSMSQHLQKVVE 196 (217)
Q Consensus 149 ~i~YEdL~~----------~FV------~--------~~~------~~~~~f~R-kG~v-GdWk~~fs~e~~~~~~~~~~ 196 (217)
+++=|-|+. +|+ + .+| .+.+.-.| -|++ |.=--+..++.++++.+.+.
T Consensus 264 fVsGerli~dPa~E~~rVqdFLgLkr~it~khfyFnktKGFpClkK~e~ss~prCLgksKgr~hp~idp~~i~rLrefyr 343 (360)
T KOG3704|consen 264 FVSGERLISDPAGELGRVQDFLGLKRVITDKHFYFNKTKGFPCLKKAEDSSRPRCLGKSKGRTHPHIDPEVIRRLREFYR 343 (360)
T ss_pred EecCceeecCcHHHHHHHHHHhcccceeccceeEEecCCCceeeeccccCCCccccccccCCCCCCCCHHHHHHHHHHhc
Confidence 999998888 442 1 111 11111111 2443 45566799999999998876
Q ss_pred hHc----CCCCcccccc
Q 045957 197 EKL----DGPSLTFKTS 209 (217)
Q Consensus 197 ~~l----~~~g~~f~~~ 209 (217)
+-= +-+|-+|.|.
T Consensus 344 pfN~kFyq~tG~dF~W~ 360 (360)
T KOG3704|consen 344 PFNLKFYQMTGQDFGWE 360 (360)
T ss_pred chhhhHHHhhccccCCC
Confidence 522 3356677763
No 8
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=88.79 E-value=0.51 Score=42.30 Aligned_cols=83 Identities=13% Similarity=0.289 Sum_probs=49.5
Q ss_pred CCEEEeccCCcchhhHHHHHHHHhhCCCC----CCC-----CCCcccc------CCCCcc-ceEEeeCCCCCC-Ccchhc
Q 045957 20 SDIILAPYPKSGTTWIKALTFTIVNRSRY----AIE-----DSPLLTA------SPHQLK-DFFSTHVPYASV-PSSILE 82 (217)
Q Consensus 20 ~dv~i~syPKSGtTWl~~il~~~~~~~~~----~~~-----~~p~~e~------~~~~~~-p~~ktH~~~~~~-p~~l~~ 82 (217)
+-|||=+ .|||+|=++.||.......+. +.. ..|..-. .+.... .++..|+.|+.- ...+-.
T Consensus 68 nIvFlKT-HKTgSSTv~nIL~Rfg~~~nL~~alP~~~~~~~~~P~~f~~~~v~~~~~~~~~nIl~~H~rfn~~~~~~lmP 146 (402)
T PF06990_consen 68 NIVFLKT-HKTGSSTVQNILFRFGEKHNLTFALPRGGRNQFGYPAPFNARFVEGYPPGGRFNILCHHMRFNRPEVRKLMP 146 (402)
T ss_pred eEEEEec-CCcccHHHHHHHHHHHHHcCCEEecCCCCCCCCCCCCcCCccccccCCCCCCceEEeehhccCHHHHHHhCC
Confidence 4455544 599999999999887543221 111 1121110 000111 188889988632 122333
Q ss_pred ccceEEEEeeCCCceEEEeec
Q 045957 83 SNCRIVYICTNPLGQFIARRN 103 (217)
Q Consensus 83 ~~~k~I~i~RdPrDv~vS~~~ 103 (217)
+++++|=|+|||...+.|.|+
T Consensus 147 ~dt~yiTILRdP~~~feS~f~ 167 (402)
T PF06990_consen 147 PDTKYITILRDPVSHFESSFN 167 (402)
T ss_pred CCCeEEEEEcCHHHHHHhHHH
Confidence 578999999999999999943
No 9
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=88.40 E-value=0.36 Score=40.32 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=19.6
Q ss_pred EEEeccCCcchhhHHHHHHHHhhC
Q 045957 22 IILAPYPKSGTTWIKALTFTIVNR 45 (217)
Q Consensus 22 v~i~syPKSGtTWl~~il~~~~~~ 45 (217)
.+|+|-||||+||+.++|.+....
T Consensus 2 yii~~t~RSGStlL~~~L~~tg~~ 25 (245)
T PF09037_consen 2 YIICSTQRSGSTLLCELLRATGVA 25 (245)
T ss_dssp EEEEE-TTSSHHHHHHHHHHCTSS
T ss_pred eEEEeCCCCcHHHHHHHHHhCcCC
Confidence 378999999999999999986543
No 10
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.21 E-value=1.9 Score=40.04 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=76.0
Q ss_pred CCEEEeccCCcchhhHHHHHHHHhhC-CCCCC----CCCCccccC-------------C--CCccc---eEEeeCCCCC-
Q 045957 20 SDIILAPYPKSGTTWIKALTFTIVNR-SRYAI----EDSPLLTAS-------------P--HQLKD---FFSTHVPYAS- 75 (217)
Q Consensus 20 ~dv~i~syPKSGtTWl~~il~~~~~~-~~~~~----~~~p~~e~~-------------~--~~~~p---~~ktH~~~~~- 75 (217)
.+..|++.-|+|||=+-..|..-.+. ...+. +.+.++..+ | ..... +-||-..++.
T Consensus 596 PkfLiIGPQKTGtTAly~FLsmHp~i~sn~psp~tFEEvQFFng~NY~kGidWYMdfFP~psn~~tdf~FEKSAtYFdse 675 (873)
T KOG3703|consen 596 PKFLIIGPQKTGTTALYLFLSMHPSISSNTPSPETFEEVQFFNGNNYHKGIDWYMDFFPVPSNTTTDFLFEKSATYFDSE 675 (873)
T ss_pred cceEEEcCcccchhHHHHHHhhCcchhcCCCCCCchhheeeccCCccccchhhHHhcCCCCccccchheeeccccccCCc
Confidence 46789999999999777777654331 11111 233333221 1 11111 4455544432
Q ss_pred -CCcch--hcccceEEEEeeCCCceEEEeeccC--CCCCC--------------CHHHHHHHhcCCc-cccCChHHHHHH
Q 045957 76 -VPSSI--LESNCRIVYICTNPLGQFIARRNNL--EPSQL--------------ELDEAFERTCNGI-HVFGPIWEHVLG 135 (217)
Q Consensus 76 -~p~~l--~~~~~k~I~i~RdPrDv~vS~~~~~--~~~~~--------------~~~~~~~~~~~g~-~~~g~~~~~~~~ 135 (217)
.|+.- .-|.||||-|+-||-|.+.|+|+|. +..+. +-...++.. +.. +.-|-|..|+..
T Consensus 676 ~aPkraasLvP~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fyeVIsas~~aps~lk~l-q~RClvpG~Ya~Hler 754 (873)
T KOG3703|consen 676 VAPKRAASLVPHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYEVISASSSAPSALKAL-QNRCLVPGWYATHLER 754 (873)
T ss_pred ccchhhhhhCCcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEEEEecCCCCcHHHHHH-HHhccCcchHHHHHHH
Confidence 24311 1278999999999999999997543 11111 001111111 111 122556788999
Q ss_pred HHHhhhcCCCcEEEEeehhhcc
Q 045957 136 YWKASIEQPGKILFLKYENLGK 157 (217)
Q Consensus 136 w~~~~~~~~~~vl~i~YEdL~~ 157 (217)
|+... ...++++|.=++|+.
T Consensus 755 WL~y~--~~~QlliiDg~qLr~ 774 (873)
T KOG3703|consen 755 WLTYF--PAQQLLIIDGQQLRT 774 (873)
T ss_pred HHHhC--CcccEEEEccHHhcc
Confidence 98874 335788898888887
No 11
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=87.40 E-value=0.8 Score=39.29 Aligned_cols=80 Identities=14% Similarity=0.381 Sum_probs=49.6
Q ss_pred EEEeccCCcchhhHHHHHHHHhhCCCCCC------CCCCcccc----------CC-CCccc-eEEeeCCCCCCCcchhcc
Q 045957 22 IILAPYPKSGTTWIKALTFTIVNRSRYAI------EDSPLLTA----------SP-HQLKD-FFSTHVPYASVPSSILES 83 (217)
Q Consensus 22 v~i~syPKSGtTWl~~il~~~~~~~~~~~------~~~p~~e~----------~~-~~~~p-~~ktH~~~~~~p~~l~~~ 83 (217)
|+..--||||+|=...|+.-+.....+.. .+-+.+.. .. .+..| ++.-|..|--.. .+.-+
T Consensus 81 ViyNRVpKtGStTf~niaydL~ekn~F~vlh~nvtkn~~vlsl~dQ~qfvknIssw~e~~P~~yhgHV~FldFs-kFgi~ 159 (361)
T KOG3922|consen 81 VIYNRVPKTGSTTFVNIAYDLSEKNGFHVLHINVTKNETVLSLPDQQQFVKNISSWTEMKPALYHGHVAFLDFS-KFGIA 159 (361)
T ss_pred EEEecCCCccchhHHHHHHHHHhccCceEEEeeccccceeeccHHHHHHHHhhccccccCcceeeeeeeeeehh-hhCCC
Confidence 67778899999999888888876543321 11111111 00 12235 788888763222 12123
Q ss_pred cceEEEEeeCCCceEEEee
Q 045957 84 NCRIVYICTNPLGQFIARR 102 (217)
Q Consensus 84 ~~k~I~i~RdPrDv~vS~~ 102 (217)
+.-+|-|+|||.+.+||+|
T Consensus 160 ~PIYINvIRdPveRllS~y 178 (361)
T KOG3922|consen 160 RPIYINVIRDPVERLLSYY 178 (361)
T ss_pred CceEEeeeccHHHHHHhHh
Confidence 4567888999999999993
No 12
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.21 E-value=0.57 Score=37.98 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.8
Q ss_pred CCEEEeccCCcchhhHHHHHHHHhhCCC
Q 045957 20 SDIILAPYPKSGTTWIKALTFTIVNRSR 47 (217)
Q Consensus 20 ~dv~i~syPKSGtTWl~~il~~~~~~~~ 47 (217)
+..+|++-||||+||+-.+|......|+
T Consensus 6 r~Ylilt~pRSGStlLckllaatG~sG~ 33 (250)
T COG4424 6 RPYLILTTPRSGSTLLCKLLAATGCSGE 33 (250)
T ss_pred cceeEecCCCCcchHHHHHHHhcCCCCC
Confidence 4578999999999999999998766554
No 13
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=86.66 E-value=0.11 Score=40.33 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.3
Q ss_pred cccceEEEEeeCCCceEEEe
Q 045957 82 ESNCRIVYICTNPLGQFIAR 101 (217)
Q Consensus 82 ~~~~k~I~i~RdPrDv~vS~ 101 (217)
-|+ |+|+++|||+|++.|.
T Consensus 126 ~p~-~~V~i~RdP~~~~~S~ 144 (215)
T PF13469_consen 126 FPD-RFVHIVRDPRDVAASW 144 (215)
T ss_dssp STT-EEEEEE--HHHHHHHH
T ss_pred CCC-eEEEEEeChHHHHhhH
Confidence 368 9999999999999997
No 14
>KOG4651 consensus Chondroitin 6-sulfotransferase and related sulfotransferases [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=60.59 E-value=1.6 Score=38.10 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=46.0
Q ss_pred cCC-CCEEEeccCCcchhhHHHHHHHHhhCCCCCC-CCCC---ccccCCCCccceEEeeCCCCCCCc-c-hhcccceEEE
Q 045957 17 AED-SDIILAPYPKSGTTWIKALTFTIVNRSRYAI-EDSP---LLTASPHQLKDFFSTHVPYASVPS-S-ILESNCRIVY 89 (217)
Q Consensus 17 ~r~-~dv~i~syPKSGtTWl~~il~~~~~~~~~~~-~~~p---~~e~~~~~~~p~~ktH~~~~~~p~-~-l~~~~~k~I~ 89 (217)
+.| ..+..+.-|||++|.+..|...|.+.+.+.. .+++ |-... .+...-++.. .|. . ....+..-+.
T Consensus 78 vapk~kl~~C~I~Ksms~l~~nimc~L~n~~~y~~~~~~~~~~w~~~~--~c~~~~~~f~----~~~~~~~~~~~~~kfa 151 (324)
T KOG4651|consen 78 VAPKYKLIYCEIPKSMSTLWTNIMCLLYNETQYTADNRSLSDTWHTSR--SCEKEDKSFM----NPSILLKNLKDTVKFA 151 (324)
T ss_pred eCCCCceEEEeecccHhhhhhhhheeEeChhhhccccccchHHHhhcc--ccccchhhcc----CHHHHhhcccCeEEEE
Confidence 443 4789999999999999999988877654332 1111 11110 0100110110 111 1 1123444556
Q ss_pred EeeCCCceEEEeec
Q 045957 90 ICTNPLGQFIARRN 103 (217)
Q Consensus 90 i~RdPrDv~vS~~~ 103 (217)
++|||.+.+||.|.
T Consensus 152 FIRDP~eRFVS~y~ 165 (324)
T KOG4651|consen 152 FIRDPFERFVSAYL 165 (324)
T ss_pred EecCcHHHHHHHHH
Confidence 89999999999963
No 15
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=36.16 E-value=34 Score=25.00 Aligned_cols=20 Identities=45% Similarity=0.489 Sum_probs=15.5
Q ss_pred EEEeccCCcc-hhhHHHHHHH
Q 045957 22 IILAPYPKSG-TTWIKALTFT 41 (217)
Q Consensus 22 v~i~syPKSG-tTWl~~il~~ 41 (217)
|++++.|=|| |||.+++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 6899999999 6676666644
No 16
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=28.80 E-value=66 Score=24.48 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=32.0
Q ss_pred eecccCCCccCCcHHHHHHHHHHHHhHcCCCCcccc
Q 045957 172 RKGEVGNWKNYLSPSMSQHLQKVVEEKLDGPSLTFK 207 (217)
Q Consensus 172 RkG~vGdWk~~fs~e~~~~~~~~~~~~l~~~g~~f~ 207 (217)
+||..-+|-+--+|++.+.+-+.+.+.|+..|+.-.
T Consensus 86 ~kG~RPsFs~aa~p~~A~~lYe~f~~~lr~~~~~V~ 121 (145)
T COG1490 86 KKGRRPSFSKAAKPDQAEELYEYFVELLRELGIKVE 121 (145)
T ss_pred cCCCCCCccccCChHHHHHHHHHHHHHHHhcCCcce
Confidence 688888999999999999999999999999887643
No 17
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=28.80 E-value=47 Score=17.86 Aligned_cols=14 Identities=43% Similarity=0.710 Sum_probs=11.4
Q ss_pred CcchhhHHHHHHHH
Q 045957 29 KSGTTWIKALTFTI 42 (217)
Q Consensus 29 KSGtTWl~~il~~~ 42 (217)
|||.+|+...+..+
T Consensus 8 KsGK~Wv~a~~~~~ 21 (29)
T TIGR03715 8 KSGKQWVFAAITTL 21 (29)
T ss_pred ecccHHHHHHHHHH
Confidence 89999998876654
No 18
>PF11347 DUF3148: Protein of unknown function (DUF3148); InterPro: IPR021495 This family of proteins has no known function.
Probab=28.41 E-value=1.1e+02 Score=20.00 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=27.0
Q ss_pred ceEEeeCCCCCC-CcchhcccceEEEEeeCCCceEEEee
Q 045957 65 DFFSTHVPYASV-PSSILESNCRIVYICTNPLGQFIARR 102 (217)
Q Consensus 65 p~~ktH~~~~~~-p~~l~~~~~k~I~i~RdPrDv~vS~~ 102 (217)
|++||-.|-.+| |..+-..+---..+.|.|.|+..=-|
T Consensus 13 pylKTAdpMPmLRp~dlv~~ge~G~i~~rrp~~~w~VRf 51 (63)
T PF11347_consen 13 PYLKTADPMPMLRPPDLVKIGEVGRIVDRRPGDYWAVRF 51 (63)
T ss_pred CceeccCCccccCCcCccccCCcEEEEEecCCCEEEEEE
Confidence 489999998877 55665545555668999999765444
No 19
>PRK06851 hypothetical protein; Provisional
Probab=27.09 E-value=69 Score=28.45 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=22.7
Q ss_pred CCCEEEeccCCcc-hhhHHHHHHHHhhC
Q 045957 19 DSDIILAPYPKSG-TTWIKALTFTIVNR 45 (217)
Q Consensus 19 ~~dv~i~syPKSG-tTWl~~il~~~~~~ 45 (217)
..-++|.+.|.|| ||++++|+..+...
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~~~ 57 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFLEK 57 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3447888999999 99999999988764
No 20
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=26.30 E-value=98 Score=23.99 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=34.8
Q ss_pred hhhhhHHhhhhcCccCCCCEEEeccCCcchhhHHHHHHHHhh
Q 045957 3 VSVNGVISFRKHFQAEDSDIILAPYPKSGTTWIKALTFTIVN 44 (217)
Q Consensus 3 ~~~~~~~~~~~~~~~r~~dv~i~syPKSGtTWl~~il~~~~~ 44 (217)
..+..+++.++.+...+..|+|.+=+-||-+.+-+.++....
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 6 PAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp HHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 446678888888888899999999999999999999888433
No 21
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=24.04 E-value=37 Score=27.57 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=22.6
Q ss_pred ecccC-CCccCCcHHHHHHHHHHHHhHcCC
Q 045957 173 KGEVG-NWKNYLSPSMSQHLQKVVEEKLDG 201 (217)
Q Consensus 173 kG~vG-dWk~~fs~e~~~~~~~~~~~~l~~ 201 (217)
++..| -|++ +|+||.++|-+.+.+.|..
T Consensus 75 ~~vLG~~wr~-as~eQr~~F~~~F~~~Lv~ 103 (211)
T PRK15117 75 ALVLGRYYKD-ATPAQREAYFAAFREYLKQ 103 (211)
T ss_pred HHHhhhhhhh-CCHHHHHHHHHHHHHHHHH
Confidence 44455 5765 9999999999999998875
No 22
>PRK04290 30S ribosomal protein S6e; Validated
Probab=23.69 E-value=35 Score=25.11 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=14.6
Q ss_pred EEEeccCCcchhhHHHH
Q 045957 22 IILAPYPKSGTTWIKAL 38 (217)
Q Consensus 22 v~i~syPKSGtTWl~~i 38 (217)
-+++|+|++|+++.-++
T Consensus 5 Kl~IsdP~tG~~~~~ei 21 (115)
T PRK04290 5 KVVVSDPKTGKAYQIEI 21 (115)
T ss_pred EEEEEcCCCCeEEEEEe
Confidence 47899999999988766
No 23
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=23.39 E-value=83 Score=25.00 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=18.5
Q ss_pred CEEEeccCCcc-hhhHHHHHHHHh
Q 045957 21 DIILAPYPKSG-TTWIKALTFTIV 43 (217)
Q Consensus 21 dv~i~syPKSG-tTWl~~il~~~~ 43 (217)
-|.+++|+-|| ||++..++..+.
T Consensus 24 ~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 24 VLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 47799999999 678888887654
No 24
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=23.31 E-value=51 Score=22.92 Aligned_cols=28 Identities=14% Similarity=0.420 Sum_probs=14.7
Q ss_pred cCccCCCCEEEeccCCcchhhHHHHHHHHhh
Q 045957 14 HFQAEDSDIILAPYPKSGTTWIKALTFTIVN 44 (217)
Q Consensus 14 ~~~~r~~dv~i~syPKSGtTWl~~il~~~~~ 44 (217)
+.+|..+.||-+||||. |=+.=+.++..
T Consensus 3 d~~P~RdHVFhltFPke---WK~~DI~qlFs 30 (87)
T PF08675_consen 3 DPQPSRDHVFHLTFPKE---WKTSDIYQLFS 30 (87)
T ss_dssp ----SGCCEEEEE--TT-----HHHHHHHCC
T ss_pred CCCCCcceEEEEeCchH---hhhhhHHHHhc
Confidence 35677889999999995 65555555543
No 25
>PF12197 lci: Bacillus cereus group antimicrobial protein; InterPro: IPR020976 This entry represents antimicrobial peptides from bacteria of approximately 40 amino acids in length.; PDB: 2B9K_A.
Probab=23.20 E-value=19 Score=21.85 Aligned_cols=16 Identities=19% Similarity=0.702 Sum_probs=9.3
Q ss_pred CCCEEEeccCCcchhh
Q 045957 19 DSDIILAPYPKSGTTW 34 (217)
Q Consensus 19 ~~dv~i~syPKSGtTW 34 (217)
++.||-.+|-.+|+||
T Consensus 8 ~nGvFAN~F~~~GitW 23 (45)
T PF12197_consen 8 SNGVFANSFSDDGITW 23 (45)
T ss_dssp TT-----EEEETTEEE
T ss_pred CCCceEEEEEcCCcEE
Confidence 6778888888889888
No 26
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=22.79 E-value=86 Score=24.08 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=15.9
Q ss_pred CEEEeccCCcc-hhhHHHHHHH
Q 045957 21 DIILAPYPKSG-TTWIKALTFT 41 (217)
Q Consensus 21 dv~i~syPKSG-tTWl~~il~~ 41 (217)
-|++++.|-|| |||.+.+...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999 5566666554
No 27
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=21.86 E-value=94 Score=21.63 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=13.5
Q ss_pred EEEeccCCcchh-hHHHHHH
Q 045957 22 IILAPYPKSGTT-WIKALTF 40 (217)
Q Consensus 22 v~i~syPKSGtT-Wl~~il~ 40 (217)
|+|++-++||-| .++.++.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 789999999965 4444443
No 28
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=21.81 E-value=75 Score=24.96 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=20.1
Q ss_pred CccCCcHHHHHHHHHHHHhHcCC
Q 045957 179 WKNYLSPSMSQHLQKVVEEKLDG 201 (217)
Q Consensus 179 Wk~~fs~e~~~~~~~~~~~~l~~ 201 (217)
--+-|||||...|.+.+++.|.+
T Consensus 120 my~lLTPEQKaq~~~~~~~rm~~ 142 (166)
T PRK10363 120 MYRLLTPEQQAVLNEKHQQRMEQ 142 (166)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHH
Confidence 34889999999999999998865
No 29
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=21.46 E-value=84 Score=24.24 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=22.0
Q ss_pred hcCccCCCCEEEeccCCcc-hhhHHHHHHHHhhC
Q 045957 13 KHFQAEDSDIILAPYPKSG-TTWIKALTFTIVNR 45 (217)
Q Consensus 13 ~~~~~r~~dv~i~syPKSG-tTWl~~il~~~~~~ 45 (217)
..+-++.+-+.|++-|+|| ||++.++...+..+
T Consensus 26 ~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g 59 (193)
T PF13481_consen 26 DGLLPRGELTLIAGPPGSGKTTLALQLAAALATG 59 (193)
T ss_dssp TTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT-
T ss_pred CCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 3444455668999999999 55566677666654
No 30
>COG2125 RPS6A Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]
Probab=21.08 E-value=30 Score=25.54 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=16.6
Q ss_pred CCEEEeccCCcchhhHHHHHH
Q 045957 20 SDIILAPYPKSGTTWIKALTF 40 (217)
Q Consensus 20 ~dv~i~syPKSGtTWl~~il~ 40 (217)
+-.+++|+||+|.+...+|=.
T Consensus 3 ~~kvvisdp~~G~~~~~ei~~ 23 (120)
T COG2125 3 TFKVVISDPKTGRAYQFEIDE 23 (120)
T ss_pred ccEEEEeccCcceeeeeeech
Confidence 456899999999998776543
No 31
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.06 E-value=80 Score=20.30 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHhHcCCCCcccc----ccchhhh
Q 045957 184 SPSMSQHLQKVVEEKLDGPSLTFK----TSLEDLR 214 (217)
Q Consensus 184 s~e~~~~~~~~~~~~l~~~g~~f~----~~~~~~~ 214 (217)
+|.+.+.--+... .|..+|+.|+ .+++|++
T Consensus 5 sPv~LR~~lE~A~-~La~~GIRFVpiPv~~dee~~ 38 (61)
T PF07131_consen 5 SPVDLRKALEMAH-SLAHIGIRFVPIPVVTDEEFH 38 (61)
T ss_pred cHHHHHHHHHHHH-HHHHcCceeeccccccHHHHH
Confidence 4555555444444 8889999987 6777776
No 32
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=20.91 E-value=85 Score=23.33 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=15.0
Q ss_pred CEEEeccCCcc-hhhHHHHHH
Q 045957 21 DIILAPYPKSG-TTWIKALTF 40 (217)
Q Consensus 21 dv~i~syPKSG-tTWl~~il~ 40 (217)
.|.|++.|.|| ||.++.++.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~ 22 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVN 22 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 47899999999 555666543
No 33
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=20.67 E-value=67 Score=19.30 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.7
Q ss_pred CcchhhHHHHHHHHhhC
Q 045957 29 KSGTTWIKALTFTIVNR 45 (217)
Q Consensus 29 KSGtTWl~~il~~~~~~ 45 (217)
|=||.||..+|..+..+
T Consensus 23 R~Gt~~l~~~l~~i~~G 39 (46)
T PF10589_consen 23 REGTRQLAEILEKIVRG 39 (46)
T ss_dssp HCCCCHHHHHHHHHTBT
T ss_pred HhHHHHHHHHHHHHHcC
Confidence 46999999999999765
No 34
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=20.43 E-value=1.3e+02 Score=21.12 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.4
Q ss_pred EEEeccCCcchhhHHHHHHHHhh
Q 045957 22 IILAPYPKSGTTWIKALTFTIVN 44 (217)
Q Consensus 22 v~i~syPKSGtTWl~~il~~~~~ 44 (217)
|+|++.|-||-|-+-+.|..-++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999888888877553
No 35
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=20.14 E-value=1.1e+02 Score=24.31 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.5
Q ss_pred EEEeccCCcchhhHHHHHHHHhh
Q 045957 22 IILAPYPKSGTTWIKALTFTIVN 44 (217)
Q Consensus 22 v~i~syPKSGtTWl~~il~~~~~ 44 (217)
|.|.+.|-||||=+..+|+..++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 67899999999999999988765
Done!