BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045959
         (303 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
           Methyltransferase
 pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
           Methyltransferase
          Length = 222

 Score = 34.7 bits (78), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 61  NCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEW----DRVVHEHQG 116
           NC K + +  +GCV   L R+ F     N          Q++   EW    +R   E +G
Sbjct: 26  NCKKPDDDTRKGCVDDCLNRMIFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKG 85

Query: 117 WRLITCIWLHAG--VIHLLANMLSLVFIGIRLEQQF 150
           W + T   L AG  +I  L  ++S      R+ +Q+
Sbjct: 86  WGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQY 121


>pdb|1W36|B Chain B, Recbcd:dna Complex
 pdb|1W36|E Chain E, Recbcd:dna Complex
 pdb|3K70|B Chain B, Crystal Structure Of The Complete Initiation Complex Of
           Recbcd
 pdb|3K70|E Chain E, Crystal Structure Of The Complete Initiation Complex Of
           Recbcd
          Length = 1180

 Score = 31.2 bits (69), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 13/64 (20%)

Query: 85  PLKENPLFGPSSSTLQKLGALE----------WDRVVHEHQGWRLITCIWLHAGVIHLLA 134
           P +EN L    ++++  L AL+          WD VV E  G+R    IW   GV+ +L 
Sbjct: 606 PERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQ---IWRKRGVMPMLR 662

Query: 135 NMLS 138
            ++S
Sbjct: 663 ALMS 666


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.143    0.493 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,816,370
Number of Sequences: 62578
Number of extensions: 259259
Number of successful extensions: 503
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 12
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)