BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045959
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=AN10929 PE=3 SV=1
Length = 503
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 64/254 (25%)
Query: 108 DRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSG---- 163
D Q +R I ++LH+G +H+ N+L + +G +E+ G+ R G VYL SG
Sbjct: 243 DDKPAPDQWFRFIIPMFLHSGFVHIGFNLLVQMTMGADMERMIGWWRYGLVYLSSGIWGF 302
Query: 164 -FGGAYY-----------LLFLFNAVSLLVLLAA---------ALLTLVVIIAINLAVGI 202
GG Y LF A+ +L LL L+ +V+ IA++ +G+
Sbjct: 303 VLGGNYAGQGEASCGCSGALFGILALFVLDLLYGWNDRQNPWVELIIMVLGIAVSFVLGL 362
Query: 203 LPHVDNFAHIGGFMAGFLLGFVLLLRPQF-----------------GWAERHQLPAQARV 245
LP +DNF+H+GGF G LG ++ P G A + P Q +
Sbjct: 363 LPGLDNFSHLGGFTMGLALGLCVMRSPNALRERIGLARSPYVAMSGGVAAENADPDQNKT 422
Query: 246 KS--------RHNPYQY------------VLCIVALVLLIVGFTVGLVMLFRGENGNDHC 285
+ + NP + ++ + ALV +++GF + +V ++ + N C
Sbjct: 423 STGSNIGGLGKFNPKGFFAGRKPLWWAWWLVRLGALVAVLIGFILLIVNFYKYPSSN--C 480
Query: 286 SWCHYLSCVPTSKW 299
SWC+ SC+P + W
Sbjct: 481 SWCYRFSCLPVNGW 494
>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
Length = 857
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 41/211 (19%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
Q +RL ++LHAG++H L ++ + I LE+ G++R+ +Y+LSG G A +L
Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 713
Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
+ L + +L A L+ ++ A G+LP +DNFA
Sbjct: 714 PYRAEVGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWIDNFA 773
Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
HI GF++GF L F L FG R + Y+ I+ +++ +G
Sbjct: 774 HISGFISGFFLSFAFLPYISFG---------------RLDMYRKRCQIIIFLVVFLGLFA 818
Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
GLV+LF C WC L+C+P + C
Sbjct: 819 GLVVLFYVHPIK--CEWCELLTCIPFTDKFC 847
>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2
Length = 856
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 41/211 (19%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
Q +RL ++LHAG++H L ++ + + LE+ G+ R+ +YLLSG G A +L
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFL 712
Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
+ LF + +L A L+ ++ A G+LP +DNFA
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFA 772
Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
HI GF++G L F L FG + ++ Q + I +V L + +
Sbjct: 773 HISGFVSGLFLSFAFLPYISFGKFDLYRKRCQ-------------IIIFQVVFLGLLAGL 819
Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
++ F C WC +L+C+P + C
Sbjct: 820 VVLFYFYPVR----CEWCEFLTCIPFTDKFC 846
>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1
Length = 856
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 41/211 (19%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
Q +RL ++LHAGV+H L ++ + + LE+ G+ R+ +YLLSG G A +L
Sbjct: 653 QFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712
Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
+ LF + +L A L+ ++ G+LP +DNFA
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 772
Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
HI GF++G L F L FG + ++ Q + + LV L + +
Sbjct: 773 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQ-------------IIVFQLVFLGLLAGL 819
Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
++ F C WC +L+C+P + C
Sbjct: 820 VVLFYFYPVR----CEWCEFLTCIPFTDKFC 846
>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 41/213 (19%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
Q +RL ++LHAG++H L ++ + + LE+ G+ R+ +YLLSG G A +L
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711
Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
+ LF + +L A L+ ++ G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771
Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
HI GF++G L F L FG + ++ Q V +Q V + L+++ +
Sbjct: 772 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIV------FQVVFLGLLAGLVVLFYVY 825
Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKCGN 303
+ C WC +L+C+P + C
Sbjct: 826 PV-----------RCEWCEFLTCIPFTDKFCEK 847
>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2
SV=1
Length = 856
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 41/211 (19%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
Q +RL ++LHAG++H L ++ + + LE+ G+ R+ +YLLSG G A +L
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712
Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
+ LF + +L A L+ ++ A G+LP +DNFA
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFA 772
Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
HI GF++G L F L FG + ++ Q + I V L + +
Sbjct: 773 HISGFVSGLFLSFAFLPYISFGKFDLYRKRCQ-------------IIIFQAVFLGLLAGL 819
Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
++ F C WC +L+C+P + C
Sbjct: 820 VVLFYFYPVR----CEWCEFLTCIPFTDKFC 846
>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2
Length = 855
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 41/211 (19%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
Q +RL ++LHAG++H L ++ + + LE+ G+ R+ +YLLSG G A +L
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711
Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
+ LF + +L A L+ ++ G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771
Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
HI GF++G L F L FG + ++ Q + +Q V + L+++ +
Sbjct: 772 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQIII------FQVVFLGLLAGLVVLFYVY 825
Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
+ C WC +L+C+P + C
Sbjct: 826 PV-----------RCEWCEFLTCIPFTDKFC 845
>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1
Length = 855
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 41/211 (19%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
Q +RL ++LHAG++H L ++ + + LE+ G+ R+ +YLLSG G A +L
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711
Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
+ LF + +L A L+ ++ G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771
Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
HI GF++G L F L FG + ++ Q + I +V L + +
Sbjct: 772 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQ-------------IIIFQVVFLGLLAGL 818
Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
++ F C WC +L+C+P + C
Sbjct: 819 VVLFYFYPVR----CEWCEFLTCIPFTDKFC 845
>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 41/213 (19%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
Q +RL ++LHAG++H L ++ + + LE+ G+ R+ +YLLSG G A +L
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711
Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
+ LF + +L A L+ ++ G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771
Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
HI GF++G L F L FG + ++ Q V +Q V + L+++ +
Sbjct: 772 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIV------FQVVFLGLLAGLVVLFYFY 825
Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKCGN 303
+ C WC +L+C+P + C
Sbjct: 826 PV-----------RCEWCEFLTCIPFTDKFCEK 847
>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1
Length = 827
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 41/211 (19%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
Q +RL ++LHAGV+H L +++ + I LE+ G+ R+ +++LSG G A +L
Sbjct: 624 QFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFL 683
Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
+ LF + LL A L L I+ G+LP +DN A
Sbjct: 684 PYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFLNLSAIVLFLFICGLLPWIDNIA 743
Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
HI GF++G LL F L FG +++ Y+ I+ +L+ G
Sbjct: 744 HIFGFLSGLLLAFAFLPYITFGTSDK---------------YRKRALILVSLLVFAGLFA 788
Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
LV+ N W YL+C P + C
Sbjct: 789 SLVIWLYVYPIN--WPWIEYLTCFPFTSRFC 817
>sp|Q6PJF5|RHDF2_HUMAN Inactive rhomboid protein 2 OS=Homo sapiens GN=RHBDF2 PE=1 SV=2
Length = 856
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 24/148 (16%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
Q +RL ++LHAGV+H L +++ + I LE+ G+ R+ +++LSG G A +L
Sbjct: 653 QFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFL 712
Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
+ LF + LL A L L I+ G+LP +DN A
Sbjct: 713 PYRAEVGPAGSQFGLLACLFVELFQSWPLLERPWKAFLNLSAIVLFLFICGLLPWIDNIA 772
Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQ 238
HI GF++G LL F L FG +++++
Sbjct: 773 HIFGFLSGLLLAFAFLPYITFGTSDKYR 800
>sp|A0JPA1|RHDF2_XENTR Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2
SV=1
Length = 826
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 41/211 (19%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
Q +RL ++LHAGVIH +++ + + LE+ G++R+ +Y+LSG G A +L
Sbjct: 623 QFYRLWLSLFLHAGVIHCCVSVVFQMTVLRDLEKLAGWLRISIIYILSGITGNLASALFL 682
Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
+ LF + +L A L L+ I+ G+LP +DN A
Sbjct: 683 PYRAEVGPAGSQFGLLACLFVELFQSWQILAKPWKAFLKLLGIVLFLFLFGLLPWIDNIA 742
Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
HI GF++G LL F L FG A++ ++ I+ +L+ VG
Sbjct: 743 HIFGFLSGLLLSFSFLPYITFGTADK---------------FRKRAMIIISLLVFVGLFA 787
Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
LV+ N +W YL+C+P + C
Sbjct: 788 SLVIWLYVYPIN--WAWIEYLTCLPFTNKFC 816
>sp|Q80WQ6|RHDF2_MOUSE Inactive rhomboid protein 2 OS=Mus musculus GN=Rhbdf2 PE=1 SV=1
Length = 827
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 41/211 (19%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
Q +R+ ++LHAG++H L +++ + I LE+ G+ R+ +++LSG G A +L
Sbjct: 624 QFYRIWLSLFLHAGIVHCLVSVVFQMTILRDLEKLAGWHRISIIFILSGITGNLASAIFL 683
Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
+ LF + LL A L I+ G+LP +DN A
Sbjct: 684 PYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFFNLSAIVLFLFICGLLPWIDNIA 743
Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
HI GF++G LL F L FG +++ Y+ I+ +L+ G
Sbjct: 744 HIFGFLSGMLLAFAFLPYITFGTSDK---------------YRKRALILVSLLVFAGLFA 788
Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
LV+ N W YL+C P + C
Sbjct: 789 SLVLWLYIYPIN--WPWIEYLTCFPFTSRFC 817
>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1
Length = 641
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 23/154 (14%)
Query: 94 PSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFV 153
P++ L+ LG LE + + + +RL T +++H G +H+L N+ + I +E +GF+
Sbjct: 320 PNARVLRHLGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILWIIEPDWGFL 379
Query: 154 RVGFVYLLSGFGGAYY-------LLFLFNAVSLLVLLAA----------------ALLTL 190
R ++ L G G + + ++ S+ LL A +L
Sbjct: 380 RTTLLFFLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYWKSIPRPGCILVF 439
Query: 191 VVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFV 224
++++ I + G+ DN+AH+GG + G L GF
Sbjct: 440 MIVVIIGILTGMAGFTDNYAHMGGALGGILWGFA 473
>sp|Q76NQ1|RHDF1_DROME Inactive rhomboid protein 1 OS=Drosophila melanogaster GN=rho-5 PE=2
SV=1
Length = 1429
Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYLLFLF 174
Q +RL+T + +HAG++HL ++ LE+ G VR VY++SGF G L
Sbjct: 1092 QLYRLLTSLCMHAGILHLAITLIFQHLFLADLERLIGTVRTAIVYIMSGFAGNLTSAILV 1151
Query: 175 N--------------AVSLLVLLA-----------AALLTLVVIIAINLAVGILPHVDNF 209
SL+ LL AL L+++ ++ + +G LP+ NF
Sbjct: 1152 PHRPEVGPSASLSGVVASLIALLVWMHWKYLHKPHIALFKLLLLCSVLVGIGTLPYQLNF 1211
Query: 210 AHIGGFMAGFLLGFVLLL 227
G +AG + G +L +
Sbjct: 1212 L---GLLAGVICGCLLTM 1226
>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1
Length = 263
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 92 FGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFG 151
+ P+ TL LGA + Q WR++T ++LHA ++HL+ N++ ++ I +RLE+++G
Sbjct: 60 YEPNERTLMLLGA-AYAPAFSNFQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYG 118
Query: 152 FVRVGFVYLLSGFGG 166
+ Y LS G
Sbjct: 119 TKKFLVTYFLSAIVG 133
>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1
Length = 283
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 98/252 (38%), Gaps = 56/252 (22%)
Query: 29 VEPGSDQQWTSWLIPMFVVANVAVFI----VAMYINNCPKNNWEGGRGCVARFLGRLSFE 84
+ G + W WL P + + + I +A+YI +
Sbjct: 40 TQSGENVSWIQWLCPGIHLKSPIIIISFVQIAVYIASLAAG------------------- 80
Query: 85 PLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGI 144
L N + P+ TL GA ++ + WRLI ++LH + H+L N+ + IG+
Sbjct: 81 -LAPNEILAPTPQTLVMFGA-NIPELIRVGEIWRLICPLFLHLNLFHILMNLWVQIRIGL 138
Query: 145 RLEQQFGFVRVGFVYLLSGF----------------GGAYYLLFLFNAVSLLVLLA---- 184
+E+++G+ + VY G GA +F V L L
Sbjct: 139 TMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTAVFALIGVQLAELALIWHA 198
Query: 185 -----AALLTLVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVL----LLRPQFGWAE 235
+A++++ + + H+D+ HIGG + GF G L ++P W +
Sbjct: 199 IQDRNSAIISVCICLFFVFVSSFGSHMDSVGHIGGLVMGFAAGIWLNENSDIKPT--WYD 256
Query: 236 RHQLPAQARVKS 247
R +L +Q + +
Sbjct: 257 RARLTSQVALAA 268
>sp|P20350|RHOM_DROME Protein rhomboid OS=Drosophila melanogaster GN=rho PE=1 SV=2
Length = 355
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 38/161 (23%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYLLFLF 174
Q WR + ++LHA HL N++ +F GI LE G R+G +Y+ F G+ +
Sbjct: 149 QVWRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAGSLGTSVVD 208
Query: 175 NAVSLL-------VLLAAALL-----------------TLVVIIAINLAVGIL------- 203
+ V L+ LLAA L ++V+ ++ +L +
Sbjct: 209 SEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVIFVSCDLGYALYTQYFDGS 268
Query: 204 -----PHVDNFAHIGGFMAGFLLGFVLLLRPQFGWAERHQL 239
P V AH+ G +AG +GF++L FG E QL
Sbjct: 269 AFAKGPQVSYIAHLTGALAGLTIGFLVL--KNFGHREYEQL 307
>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP
PE=1 SV=2
Length = 507
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 95 SSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVR 154
++ TL GA E + ++ + + WRL+T I LH G+ HL N L+L +G +E+ +G R
Sbjct: 202 NTETLVAFGAKE-NSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGR 260
Query: 155 VGFVYLLSGFGGA 167
+YL +G G+
Sbjct: 261 FLLIYLAAGITGS 273
>sp|Q19821|ROM1_CAEEL Rhomboid-related protein 1 OS=Caenorhabditis elegans GN=rom-1 PE=3
SV=2
Length = 356
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 34/145 (23%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYLLFLF 174
+ WR + ++LHAG+ HLL N++ + +GI LE R+G +YLL+ G+ L +
Sbjct: 165 EAWRFTSYMFLHAGLNHLLGNVIIQLLVGIPLEVAHKIWRIGPIYLLAVTSGSL-LQYAI 223
Query: 175 NAVSLLVLLAAALLTL-----------------------VVIIAINLAVGILPH------ 205
+ SLLV +A + L V+ + I L G H
Sbjct: 224 DPNSLLVGASAGVYALIFAHVANVILNWHEMPLRWIRVLVLFVFIFLDFGGAIHRRFYTN 283
Query: 206 ----VDNFAHIGGFMAGFLLGFVLL 226
V + AHI G + G G+V+L
Sbjct: 284 DCDSVSHLAHIAGAVTGLFFGYVVL 308
>sp|A2AGA4|RHBL2_MOUSE Rhomboid-related protein 2 OS=Mus musculus GN=Rhbdl2 PE=1 SV=1
Length = 302
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 112 HEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGA 167
+ WR I+ + +HAGV H++ N+L + +GI LE +RVG VYL G+
Sbjct: 115 KREEAWRFISYMLVHAGVQHIVGNLLMQIVLGIPLEMVHKGLRVGLVYLAGVLAGS 170
>sp|P58872|RHBL3_HUMAN Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1
Length = 404
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGA 167
Q WR +T I++HAG+ HL N++ + +G+ LE G R+G VY+ G+
Sbjct: 210 QVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGS 262
>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1
Length = 281
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 47/161 (29%)
Query: 117 WRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGA--------- 167
WR + LH+ HL N L+L IGI E+ +G ++ +Y++SG G A
Sbjct: 69 WRYPISMMLHSNGTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYY 128
Query: 168 ------------YYLLFLFNAVSLLVLLAAA--------------------------LLT 189
Y+ A ++ +AAA L
Sbjct: 129 EISNSDLWTDSTVYITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYN 188
Query: 190 LVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLLRPQ 230
L+ +IA+ L G+ VDN AHIGG + G L+ +L P
Sbjct: 189 LIAMIALTLINGLQSGVDNAAHIGGAIIGALISIAYILVPH 229
>sp|Q9NX52|RHBL2_HUMAN Rhomboid-related protein 2 OS=Homo sapiens GN=RHBDL2 PE=1 SV=2
Length = 303
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 112 HEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGA 167
+ WR I+ + +HAGV H+L N+ + +GI LE +RVG VYL G+
Sbjct: 116 KREEAWRFISYMLVHAGVQHILGNLCMQLVLGIPLEMVHKGLRVGLVYLAGVIAGS 171
>sp|P58873|RHBL3_MOUSE Rhomboid-related protein 3 OS=Mus musculus GN=Rhbdl3 PE=2 SV=1
Length = 404
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGA 167
Q WR +T I++HAGV L N+ + +G+ LE G R+G VY+ G+
Sbjct: 210 QAWRYVTYIFMHAGVEQLGLNVALQLLVGVPLEMVHGATRIGLVYVAGVVAGS 262
>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168)
GN=ydcA PE=3 SV=1
Length = 199
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 27/50 (54%)
Query: 117 WRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG 166
WRLIT I LHAG HLL N +S+ LE+ G R VY SG G
Sbjct: 59 WRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIG 108
>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana
GN=At3g58460 PE=1 SV=2
Length = 403
Score = 38.5 bits (88), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 110 VVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLL 161
++ Q +R T I H ++H+L NM++LV +G LE+ G VR+ ++ +L
Sbjct: 58 IISRFQVYRFYTAIIFHGSLLHVLFNMMALVPMGSELERIMGSVRLLYLTVL 109
>sp|O75783|RHBL1_HUMAN Rhomboid-related protein 1 OS=Homo sapiens GN=RHBDL1 PE=2 SV=1
Length = 438
Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 112 HEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGA 167
H + WR +T +++H G+ L N L + IG+ LE G +R+ +YL G+
Sbjct: 241 HRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGS 296
>sp|Q8VC82|RHBL1_MOUSE Rhomboid-related protein 1 OS=Mus musculus GN=Rhbdl1 PE=2 SV=1
Length = 373
Score = 38.1 bits (87), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 112 HEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGA 167
H + WR +T +++H G+ L N L + IG+ LE G +R+ +YL G+
Sbjct: 176 HRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGS 231
>sp|Q8BHC7|RHBL4_MOUSE Rhomboid-related protein 4 OS=Mus musculus GN=Rhbdd1 PE=1 SV=1
Length = 315
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 112 HEHQGW-RLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFG---GA 167
++ + W RL+ H HL NM+S+++ G++LE++ G F Y+++ F G
Sbjct: 60 YQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLERRLG--SRWFAYVIATFSLLTGV 117
Query: 168 YYLLFLFNAVSLL 180
YLL F LL
Sbjct: 118 VYLLLQFTVAELL 130
>sp|P34356|ROM2_CAEEL Rhomboid-related protein 2 OS=Caenorhabditis elegans GN=rom-2 PE=3
SV=2
Length = 435
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 112 HEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYLL 171
H + WRL T ++ G+ H++ N+L + IG+ LE + R+ +Y + G+ L
Sbjct: 165 HLPELWRLFTYCLINVGIFHIIFNILIQLAIGVPLELVHRW-RIYILYFMGVLFGSILSL 223
Query: 172 FLFNAVSL-------LVLLAAALLT-----------------LVVIIAINLAVGIL---- 203
L V L L+A+ + T L+V A++ + +
Sbjct: 224 ALDPTVFLCGGAAGSFSLIASHITTIATNFKEMENATCRLPILIVFAALDYVLAVYQRFF 283
Query: 204 -PHVDN---FAHIGGFMAGFLLGFVLL 226
P +D + H+GG +AG L F+L
Sbjct: 284 APRIDKVSMYGHLGGLVAGILFTFILF 310
>sp|Q4V8F3|RHBL4_RAT Rhomboid-related protein 4 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1
Length = 316
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 108 DRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFG-- 165
++ ++ RL+ H HL NM+S+++ G++LE++ G F Y+++ F
Sbjct: 57 EKCYQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEKRLG--SRWFAYIIATFSLL 114
Query: 166 -GAYYLLFLFNAVSLL 180
G YLL F + L+
Sbjct: 115 TGVVYLLLQFASAELM 130
>sp|Q9Y3Q7|ADA18_HUMAN Disintegrin and metalloproteinase domain-containing protein 18
OS=Homo sapiens GN=ADAM18 PE=2 SV=1
Length = 739
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 23 SSGSYYVEPGSDQQWTSWLI-------PMFVVANVAVFIVAMYINNCPKNNWEGGR 71
SG +Y E G + W +W I P F+V +F +C + N E R
Sbjct: 671 KSGDFYTEKGYNTHWNNWFILSFCIFLPFFIVFTTVIFKRNEISKSCNRENAEYNR 726
>sp|Q04562|TMN2_YEAST Transmembrane 9 superfamily member 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TMN2 PE=1 SV=1
Length = 672
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 75/215 (34%), Gaps = 55/215 (25%)
Query: 96 SSTLQKLGALEWDRVVHEHQGWRL-------------ITCIWLHAGVIHLLANMLSLVFI 142
S L + L D HE GW+L + I + +G+ L M S+ F
Sbjct: 336 KSDLARYNELNLDNEFHEDSGWKLGHGDVFRTPSKSMLLSILVGSGMQLFLMVMCSIFFA 395
Query: 143 GIRLEQQF---GFVRVGFV-YLLSGFGGAYYLLFLF----------NAVSLLVLLAAALL 188
+ L V FV Y L GF G+Y + ++ N + +LL A+
Sbjct: 396 AVGLVSPVSRGSLPTVMFVLYALFGFVGSYASMGVYKFFRGPYWKANMILTPILLPGAIF 455
Query: 189 TLVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLL----------------RPQFG 232
L+VI+ L FAH G + L F++LL Q
Sbjct: 456 LLIVIMNFFLL---------FAHSSGVIPARSLFFIILLWFLVSVPLSFAGSIVAHKQCN 506
Query: 233 WAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVG 267
W E P + +R PYQ A LI G
Sbjct: 507 WDEH---PTKTNQIARQIPYQPWYLRTAQATLIAG 538
>sp|Q8TEB9|RHBL4_HUMAN Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1
Length = 315
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 112 HEHQGW-RLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFG---GA 167
++ + W RL+ HA HL NM S+++ GI LE++ G F Y+++ F G
Sbjct: 60 YQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLG--SRWFAYVITAFSVLTGV 117
Query: 168 YYLLFLFNAVSLL 180
YLL F +
Sbjct: 118 VYLLLQFAVAEFM 130
>sp|Q695U0|RHBL1_TOXGO Rhomboid-like protease 1 OS=Toxoplasma gondii GN=ROM1 PE=2 SV=1
Length = 293
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 87 KENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRL 146
E PL P+++ L GA + ++ + Q WRL+ ++LHA H+ N+ + +G +
Sbjct: 82 TELPLI-PAANILVHFGA-NYPPLIKQGQVWRLLLPVFLHANFFHVFFNVFFQLRMGFTI 139
Query: 147 EQQFGFVRVGFVYLLSGFGG 166
E+++G ++ +Y S G
Sbjct: 140 ERRYGLLKFTGLYFASAIYG 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.143 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,848,958
Number of Sequences: 539616
Number of extensions: 5005897
Number of successful extensions: 20681
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 20563
Number of HSP's gapped (non-prelim): 109
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)