Query 045959
Match_columns 303
No_of_seqs 310 out of 1882
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:34:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 5.6E-25 1.9E-29 191.0 16.7 154 38-227 3-180 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 5E-26 1.7E-30 200.0 10.2 158 37-230 7-188 (196)
3 2zxe_G FXYD10, phospholemman-l 20.8 1E+02 0.0035 22.1 3.6 23 255-277 18-40 (74)
4 3j1r_A Archaeal adhesion filam 16.3 1.7E+02 0.0057 16.6 3.2 19 258-276 4-22 (26)
5 3mp7_B Preprotein translocase 12.7 3.2E+02 0.011 18.5 4.5 28 248-275 26-53 (61)
6 2hgo_A CASSIICOLIN; toxin, dis 12.6 33 0.0011 19.3 -0.5 13 291-303 4-16 (27)
7 2hlg_A Fruit-specific protein; 9.0 71 0.0024 19.7 0.0 8 283-290 16-23 (39)
8 2ww9_B Protein transport prote 8.7 3.8E+02 0.013 19.3 3.9 27 249-275 44-70 (80)
9 2jp3_A FXYD domain-containing 8.5 3.9E+02 0.013 18.6 3.7 23 255-277 16-38 (67)
10 1rh5_B Preprotein translocase 7.8 4.1E+02 0.014 18.8 3.7 26 250-275 32-57 (74)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.93 E-value=5.6e-25 Score=190.99 Aligned_cols=154 Identities=23% Similarity=0.324 Sum_probs=115.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhhcccccccCCCCCCCCCChhHHHhhcccchhhhhccCcee
Q 045959 38 TSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGW 117 (303)
Q Consensus 38 ~p~vt~~li~inv~VFl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~P~~~n~l~gp~~~~L~~~Ga~~~~~i~~~~q~w 117 (303)
.|++|..++++|+++|+++....+ ....+.+++.| ....++|||
T Consensus 3 ~~pvt~~li~~~v~vf~~~~~~~~-------------~~~~~~~~~~p-----------------------~~~~~~~~w 46 (181)
T 2xov_A 3 AGPVTWVMMIACVVVFIAMQILGD-------------QEVMLWLAWPF-----------------------DPTLKFEFW 46 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCH-------------HHHHHHHSSCC-----------------------SGGGTTCTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCc-------------HHHHHhhcCCh-----------------------hhccCCCCH
Confidence 367999999999999998764311 01122333322 123578999
Q ss_pred eeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhcC-----CceeeehhHHHHH---
Q 045959 118 RLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY-YLLFLFN-----AVSLLVLLAAALL--- 188 (303)
Q Consensus 118 Rl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l-~~~~~~~-----~~~v~Gll~~~l~--- 188 (303)
|++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+.++++|++ +.++.++ |+++||++++.+.
T Consensus 47 rl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~ 126 (181)
T 2xov_A 47 RYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGE 126 (181)
T ss_dssp HHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 7776654 2345777754321
Q ss_pred -----------HHHHHHHHHHHHhc----CchHhHHHHHHHHHHHHHHHHHHhh
Q 045959 189 -----------TLVVIIAINLAVGI----LPHVDNFAHIGGFMAGFLLGFVLLL 227 (303)
Q Consensus 189 -----------~l~~~~~~~l~~g~----~p~v~~~aHlgG~l~G~l~g~~l~~ 227 (303)
.......+.+.+++ .|++|++||+||+++|++++..+.+
T Consensus 127 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 127 RDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp HCGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCceeeeHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence 22223333344443 3589999999999999999987653
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.93 E-value=5e-26 Score=200.02 Aligned_cols=158 Identities=18% Similarity=0.278 Sum_probs=114.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhhcccccccCCCCCCCCCChhHHHhhcccchhhhhccCce
Q 045959 37 WTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQG 116 (303)
Q Consensus 37 ~~p~vt~~li~inv~VFl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~P~~~n~l~gp~~~~L~~~Ga~~~~~i~~~~q~ 116 (303)
+.|++|..++++|+++|+++....+ ....+.+++.| .. +.++||
T Consensus 7 ~~~pvt~~li~~~v~vfll~~~~~~-------------~~~~~~~~~~p----------------------~~-~~~~~~ 50 (196)
T 2nr9_A 7 QQGKITLILTALCVLIYIAQQLGFE-------------DDIMYLMHYPA----------------------YE-EQDSEV 50 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHSCCC----------------------SG-GGGGCT
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCc-------------HHHHHhhcCCH----------------------hh-cccCCc
Confidence 3467999999999999998763110 01122233322 22 357899
Q ss_pred eeeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhcCC-----ceeeehhHHHHHH-
Q 045959 117 WRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY-YLLFLFNA-----VSLLVLLAAALLT- 189 (303)
Q Consensus 117 wRl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l-~~~~~~~~-----~~v~Gll~~~l~~- 189 (303)
||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|++++++|++ +.++.++. +++||++++.+..
T Consensus 51 wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~ 130 (196)
T 2nr9_A 51 WRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRD 130 (196)
T ss_dssp THHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 77766542 3447777543320
Q ss_pred ------------HHH----HHHHHHHHh-cCchHhHHHHHHHHHHHHHHHHHHhhccc
Q 045959 190 ------------LVV----IIAINLAVG-ILPHVDNFAHIGGFMAGFLLGFVLLLRPQ 230 (303)
Q Consensus 190 ------------l~~----~~~~~l~~g-~~p~v~~~aHlgG~l~G~l~g~~l~~~~~ 230 (303)
... ++.+.+... ..+++|++||+||+++|++++..+.++++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~~~ 188 (196)
T 2nr9_A 131 KLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRK 188 (196)
T ss_dssp HSSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchhhcchHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccc
Confidence 000 111222111 12489999999999999999998876543
No 3
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=20.78 E-value=1e+02 Score=22.06 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q 045959 255 VLCIVALVLLIVGFTVGLVMLFR 277 (303)
Q Consensus 255 ~~~~~~~~ll~~~~~~~~~~~~~ 277 (303)
.+++..+++..++|+++++++..
T Consensus 18 tLRigGLifA~vLfi~GI~iilS 40 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIILLA 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HheeccchhHHHHHHHHHHHHHc
Confidence 47888888888888888888765
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=16.30 E-value=1.7e+02 Score=16.57 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045959 258 IVALVLLIVGFTVGLVMLF 276 (303)
Q Consensus 258 ~~~~~ll~~~~~~~~~~~~ 276 (303)
+++.+++++.-+.+.+.+|
T Consensus 4 iVA~~lLIviav~aaVlly 22 (26)
T 3j1r_A 4 VIATLLLILIAVAAAVLLY 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666555
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=12.66 E-value=3.2e+02 Score=18.53 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=18.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045959 248 RHNPYQYVLCIVALVLLIVGFTVGLVML 275 (303)
Q Consensus 248 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 275 (303)
-++-++.+..++++.++++|++..++-+
T Consensus 26 d~~Ef~~iak~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 26 NWATYKRAAKITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777776655443
No 6
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=12.60 E-value=33 Score=19.26 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=10.1
Q ss_pred eeeeeCCCCCCCC
Q 045959 291 LSCVPTSKWKCGN 303 (303)
Q Consensus 291 ~~C~p~~~~~c~~ 303 (303)
.+|+++...||.+
T Consensus 4 vscv~fgngfcgd 16 (27)
T 2hgo_A 4 VSCVNFGNGFCGD 16 (27)
T ss_dssp CSCEEETTTEEEC
T ss_pred eEeEeecCccccC
Confidence 5788888888854
No 7
>2hlg_A Fruit-specific protein; beta antiparallel, plant protein; NMR {Lycopersicon esculentum}
Probab=8.99 E-value=71 Score=19.69 Aligned_cols=8 Identities=25% Similarity=0.949 Sum_probs=6.3
Q ss_pred CCCCccce
Q 045959 283 DHCSWCHY 290 (303)
Q Consensus 283 ~~C~~c~y 290 (303)
..|+||+.
T Consensus 16 TlC~wCK~ 23 (39)
T 2hlg_A 16 TLCQFCKE 23 (39)
T ss_dssp SSCCEEEE
T ss_pred Eeccccee
Confidence 57999974
No 8
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=8.74 E-value=3.8e+02 Score=19.32 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=19.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045959 249 HNPYQYVLCIVALVLLIVGFTVGLVML 275 (303)
Q Consensus 249 ~~~~~~~~~~~~~~ll~~~~~~~~~~~ 275 (303)
++-++.+..+.++.++++|++..++-+
T Consensus 44 r~Ef~~iak~t~iG~~imG~IGfiIkL 70 (80)
T 2ww9_B 44 LKEYTKIVKAVGIGFIAVGIIGYAIKL 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888887766544
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.54 E-value=3.9e+02 Score=18.61 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q 045959 255 VLCIVALVLLIVGFTVGLVMLFR 277 (303)
Q Consensus 255 ~~~~~~~~ll~~~~~~~~~~~~~ 277 (303)
.+++..+++..++|+++++++..
T Consensus 16 tLRigGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 16 SLQLGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HheecchhhHHHHHHHHHHHHHc
Confidence 47778888888888888877764
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=7.81 E-value=4.1e+02 Score=18.80 Aligned_cols=26 Identities=19% Similarity=0.292 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 045959 250 NPYQYVLCIVALVLLIVGFTVGLVML 275 (303)
Q Consensus 250 ~~~~~~~~~~~~~ll~~~~~~~~~~~ 275 (303)
+-++.+..+.++.++++|++..++-+
T Consensus 32 ~EF~~iak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 32 DEYLAVAKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777776555443
Done!