BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045960
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 238 bits (606), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 190/323 (58%), Gaps = 33/323 (10%)
Query: 1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHR----LNRKPPVLHSFLNDLPRSDFNTVF 56
CI+ ADLGC+SGPN LL + + S+DK+ L R P + FLNDL +DFN+VF
Sbjct: 54 CIKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELER--PTIQIFLNDLFPNDFNSVF 111
Query: 57 KSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-- 114
K LPSFY +L E G + GSC + A PGSFY+RLFP + F++S Y L WLS++P G
Sbjct: 112 KLLPSFYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLV 171
Query: 115 ---------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND- 158
+ + V KA+L+QF DF+TFL+ SEEL S GRM+LT +
Sbjct: 172 TELGIGTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGV 231
Query: 159 NFHATPGEPML-MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV 217
A +L M + D++ EG EE K+ SF + P+Y S +EVK IV++EGSF+I +
Sbjct: 232 ELDARNAIDLLEMAINDLVVEGHLEEEKLDSF-NLPVYIPSAEEVKCIVEEEGSFEILYL 290
Query: 218 ETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATK 277
ETF V + GF +D D++ + +YV VRAV E LA+ F +A + +I RFA
Sbjct: 291 ETFKVLYDAGF--SID----DEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKH 344
Query: 278 VTDVVLDKGRGAYASLLISLVKK 300
VL G+G Y +L+ISL KK
Sbjct: 345 AAK-VLPLGKGFYNNLIISLAKK 366
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 236 bits (603), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 190/328 (57%), Gaps = 30/328 (9%)
Query: 1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK--PPVLHSFLNDLPRSDFNTVFKS 58
C + DLGC+SGPN + + S+DK+ + P + FLNDL ++DFN+VFK
Sbjct: 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKL 112
Query: 59 LPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG---- 114
LPSFY L E G + GSC + A PGSFY+RLFP + F++S Y LHWLS++P G
Sbjct: 113 LPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTE 172
Query: 115 -------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY-NDNF 160
+ + + KA+L+QF DF+TFL+ SEEL S+GRM+LT + D F
Sbjct: 173 LGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEF 232
Query: 161 -HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
H + + M + D++ EG EE K+ SF + PIY S +EVK+IV++EGSF+I +ET
Sbjct: 233 DHPNSMDLLEMSINDLVIEGHLEEEKLDSF-NVPIYAPSTEEVKRIVEEEGSFEILYLET 291
Query: 220 FNVSWLVGFVDGVDNKG-------SDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHR 272
FN + GF D +G D++AR +V VR++ E LA+ F +A + ++
Sbjct: 292 FNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSH 351
Query: 273 RFATKVTDVVLDKGRGAYASLLISLVKK 300
R A VL G+G Y S++ISL KK
Sbjct: 352 RIAKNAAK-VLRSGKGFYDSVIISLAKK 378
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 175/317 (55%), Gaps = 30/317 (9%)
Query: 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK-PPVLHSFLNDLPRSDFNTVFKSLP 60
+ ADLGCSSGPNAL E I +++++ ++ R+ P FLNDLP +DFN +F+SLP
Sbjct: 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP 112
Query: 61 SFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-QGNES 119
+ G CF+ PGSFY RLFP N L F++SSY+L WLS++P G + N+
Sbjct: 113 I--------ENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKG 164
Query: 120 DVH----------KAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPML 169
+++ A+ QF+ D + FL+ R++E+ GRMVLT+L + E L
Sbjct: 165 NIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCL 224
Query: 170 ------MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS 223
M L M+SEGL EE K+ F + P Y S EV+ + KEGSF I +E +
Sbjct: 225 IWQLLAMALNQMVSEGLIEEEKMDKF-NIPQYTPSPTEVEAEILKEGSFLIDHIEASEIY 283
Query: 224 WLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVL 283
W DG D GS + G V + +RAV E L + F +A ++++ R+ + + +
Sbjct: 284 WSSCTKDG-DGGGSVE-EEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIE-RM 340
Query: 284 DKGRGAYASLLISLVKK 300
K + + ++++SL++K
Sbjct: 341 SKEKTKFINVIVSLIRK 357
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 141/316 (44%), Gaps = 49/316 (15%)
Query: 6 DLGCSSGPNALLPTWEAIDSLDK-ICHRLNRK---PPVLHSFLNDLPRSDFNTVFKSLPS 61
DLGCSSG N T ID + K I R + PP +F +DLP +DFNT+F+ LP
Sbjct: 58 DLGCSSGAN----TVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPP 113
Query: 62 F-----YERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-- 114
E G+ S FVA PGSFY RLFP +DF +S+++LHWLS++P+
Sbjct: 114 LVSNTCMEECLAADGNR--SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVT 171
Query: 115 --------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF 160
G A+ QF++D + FL+ R+ E+K G M L L +
Sbjct: 172 DRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSV 231
Query: 161 HAT--PGEPMLM------VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSF 212
T G +L D++ EGL K F + P+Y S+ + K++V GSF
Sbjct: 232 DPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGF-NIPVYAPSLQDFKEVVDANGSF 290
Query: 213 DIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVG----ESFLANLFDDATVD 268
I ++ + G V N+ D G+ R+V E+ + +
Sbjct: 291 AIDKLVVYK-----GGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFS 345
Query: 269 EIHRRFATKVTDVVLD 284
+ R + DV+++
Sbjct: 346 RVESRATSHAKDVLVN 361
>pdb|2Q8Y|A Chain A, Structural Insight Into The Enzymatic Mechanism Of The
Phophothreonine Lyase
pdb|2Z8P|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 133 FSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDF 192
+ F+ R E +SQG+ D FH + VL+DM+ + S + ED
Sbjct: 83 YDVFIHARRESPQSQGKFA-----GDKFHIS-------VLRDMVPQAFQALSGLLFSEDS 130
Query: 193 PIYRASVDEVKQIVKK 208
P+ + +V +++++V++
Sbjct: 131 PVDKWAVTDMEKVVQQ 146
>pdb|2Z8M|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8M|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 133 FSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDF 192
+ F+ R E +SQG+ D FH + VL+DM+ + S + ED
Sbjct: 83 YDVFIHARRESPQSQGKFA-----GDKFHIS-------VLRDMVPQAFQALSGLLFSEDS 130
Query: 193 PIYRASVDEVKQIVKK 208
P+ + V +++++V++
Sbjct: 131 PVDKWKVTDMEKVVQQ 146
>pdb|4HF5|H Chain H, Crystal Structure Of Fab 8f8 In Complex A H2n2 Influenza
Virus Hemagglutinin
Length = 233
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 98 FVYSSYALHWLSRMPKGQGNE 118
F++SSY +HW+ R P G+G E
Sbjct: 27 FMFSSYVMHWV-RQPPGKGLE 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,239,900
Number of Sequences: 62578
Number of extensions: 393589
Number of successful extensions: 1119
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1097
Number of HSP's gapped (non-prelim): 10
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)