Query 045960
Match_columns 300
No_of_seqs 141 out of 497
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:20:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03492 Methyltransf_7: SAM d 100.0 1.5E-92 3.2E-97 674.0 30.1 291 1-300 17-334 (334)
2 PLN02668 indole-3-acetate carb 100.0 5.1E-88 1.1E-92 648.8 32.1 292 1-299 64-385 (386)
3 PRK14103 trans-aconitate 2-met 99.3 1.6E-10 3.5E-15 105.9 18.0 198 3-281 32-231 (255)
4 PRK01683 trans-aconitate 2-met 99.3 6E-10 1.3E-14 101.9 19.0 218 2-299 33-256 (258)
5 PRK15068 tRNA mo(5)U34 methylt 98.8 4.3E-08 9.3E-13 93.5 12.5 151 3-220 125-275 (322)
6 PLN02336 phosphoethanolamine N 98.8 9.8E-07 2.1E-11 87.9 20.1 189 3-281 269-460 (475)
7 PRK10258 biotin biosynthesis p 98.7 8E-07 1.7E-11 81.0 17.4 116 85-257 93-208 (251)
8 TIGR00740 methyltransferase, p 98.7 9.2E-08 2E-12 86.8 10.8 161 3-213 56-221 (239)
9 PTZ00098 phosphoethanolamine N 98.7 5.9E-07 1.3E-11 83.2 16.3 195 2-281 54-248 (263)
10 COG4106 Tam Trans-aconitate me 98.7 4.7E-07 1E-11 81.5 14.7 165 88-299 85-255 (257)
11 TIGR02072 BioC biotin biosynth 98.7 4E-08 8.6E-13 87.5 7.9 104 2-158 36-139 (240)
12 TIGR00452 methyltransferase, p 98.7 3.4E-07 7.4E-12 87.1 13.4 93 89-220 182-274 (314)
13 PRK08317 hypothetical protein; 98.7 5.1E-06 1.1E-10 73.6 19.9 218 2-300 21-240 (241)
14 TIGR02752 MenG_heptapren 2-hep 98.7 1.2E-07 2.5E-12 85.2 9.3 168 3-220 48-219 (231)
15 PLN02233 ubiquinone biosynthes 98.6 1.2E-06 2.5E-11 81.1 14.6 98 91-218 141-247 (261)
16 PLN02244 tocopherol O-methyltr 98.6 2.9E-06 6.3E-11 81.4 17.8 100 84-218 175-277 (340)
17 PF13489 Methyltransf_23: Meth 98.5 4.2E-07 9.1E-12 75.9 8.4 90 88-216 71-160 (161)
18 PRK11036 putative S-adenosyl-L 98.5 5.3E-06 1.1E-10 76.1 14.7 99 91-221 108-209 (255)
19 PRK15451 tRNA cmo(5)U34 methyl 98.4 4.7E-06 1E-10 76.3 13.7 162 3-213 59-224 (247)
20 smart00828 PKS_MT Methyltransf 98.4 4.2E-06 9.2E-11 74.7 12.8 83 94-223 66-148 (224)
21 COG2226 UbiE Methylase involve 98.4 3.4E-06 7.3E-11 77.3 12.0 160 2-216 53-221 (238)
22 PRK00216 ubiE ubiquinone/menaq 98.4 4E-06 8.7E-11 74.7 11.7 171 2-222 53-228 (239)
23 PRK11705 cyclopropane fatty ac 98.3 8.9E-05 1.9E-09 72.5 20.2 140 93-293 226-368 (383)
24 PLN02490 MPBQ/MSBQ methyltrans 98.3 7.4E-06 1.6E-10 78.9 11.9 147 2-224 115-261 (340)
25 PLN02396 hexaprenyldihydroxybe 98.3 9E-06 2E-10 77.7 11.6 102 84-220 187-290 (322)
26 PF08241 Methyltransf_11: Meth 98.2 3E-06 6.5E-11 64.2 6.0 50 81-152 46-95 (95)
27 PRK11207 tellurite resistance 98.2 2.8E-05 6E-10 68.9 12.9 77 93-218 93-169 (197)
28 PRK06202 hypothetical protein; 98.2 3.1E-05 6.7E-10 69.9 13.5 165 2-224 62-227 (232)
29 PF12847 Methyltransf_18: Meth 98.2 6.4E-06 1.4E-10 65.1 8.0 93 3-154 4-111 (112)
30 TIGR01934 MenG_MenH_UbiE ubiqu 98.2 2.3E-05 5E-10 69.1 12.2 165 2-221 41-212 (223)
31 PF02353 CMAS: Mycolic acid cy 98.2 0.00029 6.3E-09 65.9 20.1 91 95-220 127-218 (273)
32 TIGR00477 tehB tellurite resis 98.2 5E-05 1.1E-09 67.1 13.4 77 93-218 92-168 (195)
33 PRK12335 tellurite resistance 98.2 3.8E-05 8.2E-10 71.9 13.3 76 93-218 182-258 (287)
34 PF01209 Ubie_methyltran: ubiE 98.1 7.1E-06 1.5E-10 74.9 7.9 162 2-218 49-219 (233)
35 PF13847 Methyltransf_31: Meth 98.1 3.3E-05 7.2E-10 65.0 11.4 145 2-210 5-152 (152)
36 PRK11873 arsM arsenite S-adeno 98.0 0.00023 5E-09 65.7 14.1 97 83-219 134-230 (272)
37 PF08242 Methyltransf_12: Meth 97.9 1.6E-05 3.6E-10 61.8 4.7 99 5-150 1-99 (99)
38 TIGR02716 C20_methyl_CrtF C-20 97.9 0.00027 5.9E-09 66.5 13.3 151 3-216 152-303 (306)
39 TIGR01983 UbiG ubiquinone bios 97.8 0.00052 1.1E-08 61.0 13.1 94 93-220 110-204 (224)
40 TIGR02081 metW methionine bios 97.8 0.00021 4.6E-09 62.7 10.2 95 91-221 71-169 (194)
41 PLN02232 ubiquinone biosynthes 97.8 0.00013 2.9E-09 62.5 8.3 100 91-217 40-145 (160)
42 PRK06922 hypothetical protein; 97.7 9.9E-05 2.1E-09 76.3 8.6 54 90-153 482-536 (677)
43 PLN02336 phosphoethanolamine N 97.7 0.00026 5.6E-09 70.6 10.8 76 91-210 99-174 (475)
44 TIGR00138 gidB 16S rRNA methyl 97.7 0.00057 1.2E-08 60.0 11.5 130 2-193 44-173 (181)
45 PRK07580 Mg-protoporphyrin IX 97.7 0.0013 2.9E-08 58.6 13.8 31 191-222 187-217 (230)
46 smart00138 MeTrc Methyltransfe 97.7 0.0002 4.4E-09 66.4 8.7 42 91-152 199-240 (264)
47 PRK00121 trmB tRNA (guanine-N( 97.6 0.00036 7.8E-09 62.0 9.6 74 88-183 104-177 (202)
48 TIGR02021 BchM-ChlM magnesium 97.6 0.0012 2.6E-08 58.9 12.6 30 191-221 179-208 (219)
49 PF03848 TehB: Tellurite resis 97.6 0.00052 1.1E-08 61.1 9.7 75 94-217 93-167 (192)
50 PRK05134 bifunctional 3-demeth 97.5 0.00076 1.6E-08 60.6 10.6 94 92-219 111-205 (233)
51 KOG3010 Methyltransferase [Gen 97.5 0.0023 5E-08 58.8 13.3 46 92-160 97-142 (261)
52 PF08003 Methyltransf_9: Prote 97.5 0.0015 3.2E-08 62.0 12.1 148 3-217 118-265 (315)
53 COG2230 Cfa Cyclopropane fatty 97.5 0.01 2.2E-07 55.9 17.2 71 131-220 153-224 (283)
54 PF05401 NodS: Nodulation prot 97.3 0.0013 2.8E-08 58.8 8.4 89 3-154 46-146 (201)
55 PRK11188 rrmJ 23S rRNA methylt 97.3 0.0024 5.2E-08 57.2 10.3 55 91-156 113-167 (209)
56 KOG2940 Predicted methyltransf 97.2 0.00023 5.1E-09 64.9 2.6 92 91-216 133-224 (325)
57 TIGR00091 tRNA (guanine-N(7)-) 97.1 0.0069 1.5E-07 53.3 11.4 111 3-154 19-132 (194)
58 TIGR03438 probable methyltrans 97.1 0.0019 4E-08 61.0 7.7 112 2-158 65-181 (301)
59 PRK09489 rsmC 16S ribosomal RN 97.0 0.0024 5.2E-08 61.6 8.4 105 3-154 199-303 (342)
60 PF13649 Methyltransf_25: Meth 97.0 0.00034 7.3E-09 54.7 2.1 100 4-148 1-101 (101)
61 PRK15001 SAM-dependent 23S rib 97.0 0.0035 7.7E-08 61.3 9.4 110 3-154 231-340 (378)
62 KOG1540 Ubiquinone biosynthesi 97.0 0.0047 1E-07 57.3 9.1 167 2-216 102-278 (296)
63 PRK13255 thiopurine S-methyltr 97.0 0.021 4.5E-07 51.7 13.2 80 94-223 115-194 (218)
64 PLN02585 magnesium protoporphy 96.9 0.026 5.6E-07 53.9 14.1 27 194-221 275-301 (315)
65 PRK00107 gidB 16S rRNA methylt 96.9 0.0071 1.5E-07 53.5 9.5 99 2-154 47-145 (187)
66 TIGR02469 CbiT precorrin-6Y C5 96.9 0.0051 1.1E-07 48.8 7.6 36 94-154 87-122 (124)
67 TIGR00537 hemK_rel_arch HemK-r 96.8 0.0088 1.9E-07 51.7 9.4 71 82-157 71-143 (179)
68 TIGR03840 TMPT_Se_Te thiopurin 96.8 0.017 3.7E-07 52.0 11.3 80 94-223 112-191 (213)
69 cd02440 AdoMet_MTases S-adenos 96.7 0.0054 1.2E-07 45.5 6.6 102 3-153 1-103 (107)
70 PF00891 Methyltransf_2: O-met 96.7 0.0081 1.7E-07 54.4 8.5 100 3-160 103-205 (241)
71 PRK00312 pcm protein-L-isoaspa 96.7 0.0067 1.5E-07 53.9 7.6 46 82-155 131-176 (212)
72 PF05175 MTS: Methyltransferas 96.7 0.0062 1.3E-07 52.5 7.2 108 3-155 34-141 (170)
73 PTZ00146 fibrillarin; Provisio 96.7 0.02 4.4E-07 54.1 11.0 18 3-20 135-152 (293)
74 PRK05785 hypothetical protein; 96.6 0.0063 1.4E-07 55.1 7.2 27 84-110 99-125 (226)
75 PRK04266 fibrillarin; Provisio 96.6 0.035 7.7E-07 50.5 12.1 23 135-157 157-179 (226)
76 PF03291 Pox_MCEL: mRNA cappin 96.6 0.0084 1.8E-07 57.7 8.3 44 94-155 144-187 (331)
77 PRK13942 protein-L-isoaspartat 96.6 0.009 2E-07 53.5 7.8 46 82-155 132-177 (212)
78 KOG1270 Methyltransferases [Co 96.6 0.0094 2E-07 55.4 7.9 89 96-217 159-247 (282)
79 PRK11088 rrmA 23S rRNA methylt 96.6 0.0061 1.3E-07 56.5 6.8 96 3-157 88-184 (272)
80 PRK08287 cobalt-precorrin-6Y C 96.5 0.031 6.7E-07 48.6 10.8 38 94-156 96-133 (187)
81 PRK14121 tRNA (guanine-N(7)-)- 96.5 0.0076 1.7E-07 59.1 7.4 163 3-220 125-287 (390)
82 KOG2361 Predicted methyltransf 96.5 0.032 7E-07 51.4 10.8 165 3-220 74-238 (264)
83 PRK13944 protein-L-isoaspartat 96.3 0.022 4.8E-07 50.6 8.8 44 84-155 131-174 (205)
84 TIGR03534 RF_mod_PrmC protein- 96.3 0.012 2.6E-07 53.0 7.2 124 2-154 89-217 (251)
85 PRK14967 putative methyltransf 96.3 0.041 8.9E-07 49.4 10.2 115 82-211 89-205 (223)
86 TIGR00438 rrmJ cell division p 95.9 0.025 5.5E-07 49.3 7.0 50 90-154 93-146 (188)
87 PF07021 MetW: Methionine bios 95.9 0.09 2E-06 46.8 10.3 99 91-224 71-172 (193)
88 PF05148 Methyltransf_8: Hypot 95.9 0.0068 1.5E-07 54.7 3.2 40 91-153 118-157 (219)
89 PF13659 Methyltransf_26: Meth 95.8 0.028 6E-07 44.5 6.2 52 90-155 65-116 (117)
90 TIGR00080 pimt protein-L-isoas 95.8 0.039 8.4E-07 49.2 7.7 99 3-155 80-178 (215)
91 COG2242 CobL Precorrin-6B meth 95.7 0.074 1.6E-06 47.1 9.1 103 3-180 37-153 (187)
92 PRK14968 putative methyltransf 95.7 0.17 3.7E-06 43.2 11.3 65 83-155 79-149 (188)
93 TIGR03533 L3_gln_methyl protei 95.7 0.11 2.4E-06 48.7 10.7 24 132-155 229-252 (284)
94 PF06080 DUF938: Protein of un 95.5 0.089 1.9E-06 47.3 9.0 154 3-214 28-187 (204)
95 TIGR03587 Pse_Me-ase pseudamin 95.4 0.051 1.1E-06 48.5 7.1 24 84-108 95-118 (204)
96 PLN03075 nicotianamine synthas 95.4 0.099 2.1E-06 49.6 9.3 41 93-154 193-233 (296)
97 TIGR00406 prmA ribosomal prote 95.3 0.11 2.4E-06 48.7 9.2 42 91-157 221-262 (288)
98 PRK10901 16S rRNA methyltransf 95.2 0.16 3.5E-06 50.2 10.6 60 91-155 309-373 (427)
99 PRK00517 prmA ribosomal protei 94.9 0.22 4.8E-06 45.6 9.8 35 95-154 179-213 (250)
100 PRK14902 16S rRNA methyltransf 94.9 0.25 5.4E-06 49.1 10.9 120 3-154 253-379 (444)
101 PRK09328 N5-glutamine S-adenos 94.8 0.06 1.3E-06 49.3 6.0 24 131-154 215-238 (275)
102 COG4123 Predicted O-methyltran 94.8 0.082 1.8E-06 48.9 6.6 72 95-179 115-186 (248)
103 PHA03411 putative methyltransf 94.7 0.18 4E-06 47.4 8.8 114 3-157 67-186 (279)
104 PRK11805 N5-glutamine S-adenos 94.6 0.1 2.2E-06 49.5 7.0 23 133-155 242-264 (307)
105 KOG3045 Predicted RNA methylas 94.3 0.048 1E-06 50.9 3.9 41 91-154 224-264 (325)
106 PRK14903 16S rRNA methyltransf 94.3 0.29 6.3E-06 48.7 9.7 61 93-157 305-369 (431)
107 PF03141 Methyltransf_29: Puta 94.3 0.015 3.2E-07 58.4 0.5 45 90-156 176-221 (506)
108 TIGR00563 rsmB ribosomal RNA s 94.3 0.26 5.7E-06 48.7 9.4 124 3-157 241-371 (426)
109 PRK01544 bifunctional N5-gluta 94.2 0.11 2.4E-06 52.7 6.8 122 3-154 141-269 (506)
110 TIGR00536 hemK_fam HemK family 93.9 0.19 4.1E-06 47.0 7.1 25 131-155 221-245 (284)
111 PRK00811 spermidine synthase; 93.7 0.36 7.9E-06 45.2 8.8 45 92-154 147-191 (283)
112 PRK07402 precorrin-6B methylas 93.7 0.32 7E-06 42.5 8.0 23 133-155 121-143 (196)
113 PRK14966 unknown domain/N5-glu 93.7 0.24 5.1E-06 49.3 7.7 119 3-154 254-381 (423)
114 KOG4300 Predicted methyltransf 93.7 0.7 1.5E-05 42.0 9.9 108 77-223 129-236 (252)
115 PRK00377 cbiT cobalt-precorrin 93.6 0.54 1.2E-05 41.3 9.2 22 133-154 124-145 (198)
116 PRK14904 16S rRNA methyltransf 93.3 0.8 1.7E-05 45.6 10.9 122 3-157 253-380 (445)
117 KOG1975 mRNA cap methyltransfe 92.7 0.15 3.3E-06 49.0 4.4 56 82-155 178-238 (389)
118 PF01234 NNMT_PNMT_TEMT: NNMT/ 92.3 0.26 5.7E-06 45.8 5.4 81 95-218 158-238 (256)
119 KOG1541 Predicted protein carb 92.3 0.42 9.2E-06 43.8 6.5 54 91-155 108-161 (270)
120 PRK14901 16S rRNA methyltransf 91.9 1.6 3.6E-05 43.3 10.9 26 129-154 359-384 (434)
121 COG2227 UbiG 2-polyprenyl-3-me 91.0 0.99 2.1E-05 41.6 7.6 86 94-218 123-214 (243)
122 PRK13943 protein-L-isoaspartat 90.7 0.78 1.7E-05 44.0 7.0 18 3-20 83-100 (322)
123 TIGR00417 speE spermidine synt 90.6 1 2.2E-05 41.8 7.5 43 93-153 143-185 (270)
124 PRK03612 spermidine synthase; 89.9 1.2 2.6E-05 45.4 8.1 79 93-195 371-449 (521)
125 smart00650 rADc Ribosomal RNA 89.6 1.1 2.3E-05 38.3 6.4 18 3-20 16-33 (169)
126 TIGR00446 nop2p NOL1/NOP2/sun 89.5 3 6.4E-05 38.6 9.6 27 129-155 174-200 (264)
127 PF01728 FtsJ: FtsJ-like methy 89.0 1.5 3.2E-05 37.7 6.8 115 2-156 25-141 (181)
128 COG2813 RsmC 16S RNA G1207 met 88.4 3.1 6.6E-05 39.6 9.0 107 3-155 161-267 (300)
129 PF02390 Methyltransf_4: Putat 88.4 0.54 1.2E-05 41.7 3.8 152 3-204 20-180 (195)
130 TIGR01177 conserved hypothetic 87.9 1.8 4E-05 41.2 7.4 62 83-157 236-297 (329)
131 PRK04457 spermidine synthase; 87.7 1.8 3.9E-05 40.1 7.0 25 134-158 157-181 (262)
132 PF10294 Methyltransf_16: Puta 86.8 1.5 3.2E-05 38.0 5.5 112 2-158 47-160 (173)
133 KOG1331 Predicted methyltransf 86.3 0.75 1.6E-05 43.4 3.5 53 90-161 98-150 (293)
134 PF08123 DOT1: Histone methyla 84.4 4.9 0.00011 36.0 7.8 23 130-152 134-156 (205)
135 PF01135 PCMT: Protein-L-isoas 84.0 1.6 3.5E-05 39.2 4.6 18 2-19 74-91 (209)
136 KOG1499 Protein arginine N-met 83.6 2.8 6.1E-05 40.6 6.2 102 3-151 63-164 (346)
137 COG1352 CheR Methylase of chem 80.3 8.7 0.00019 36.0 8.0 123 1-152 97-239 (268)
138 PF06859 Bin3: Bicoid-interact 80.2 3 6.4E-05 34.0 4.3 43 96-154 2-44 (110)
139 PLN02366 spermidine synthase 80.2 7.2 0.00016 37.2 7.6 66 92-179 162-227 (308)
140 PRK15128 23S rRNA m(5)C1962 me 80.1 23 0.00049 35.0 11.3 27 128-154 313-339 (396)
141 PHA03412 putative methyltransf 79.4 1.1 2.4E-05 41.3 1.8 57 2-62 51-121 (241)
142 PRK01544 bifunctional N5-gluta 79.3 4.6 9.9E-05 41.1 6.3 111 3-154 350-462 (506)
143 PF05891 Methyltransf_PK: AdoM 78.8 2.1 4.5E-05 39.0 3.3 94 75-218 106-200 (218)
144 PRK11783 rlmL 23S rRNA m(2)G24 78.5 12 0.00025 39.8 9.2 26 129-154 631-656 (702)
145 TIGR03439 methyl_EasF probable 78.1 11 0.00023 36.3 8.1 120 2-158 78-201 (319)
146 KOG2904 Predicted methyltransf 77.5 3.5 7.7E-05 39.0 4.5 41 133-178 264-304 (328)
147 PRK10611 chemotaxis methyltran 75.0 3.3 7.1E-05 39.2 3.6 44 93-159 221-264 (287)
148 PRK13256 thiopurine S-methyltr 74.7 39 0.00084 30.8 10.5 75 94-219 123-197 (226)
149 PF07942 N2227: N2227-like pro 72.4 29 0.00063 32.6 9.2 96 77-219 144-242 (270)
150 PRK00274 ksgA 16S ribosomal RN 70.7 6.7 0.00015 36.3 4.6 45 3-52 45-101 (272)
151 PF09119 SicP-binding: SicP bi 68.1 3.1 6.6E-05 32.0 1.4 44 99-143 4-50 (81)
152 COG2518 Pcm Protein-L-isoaspar 68.1 10 0.00022 34.3 5.0 80 3-101 75-170 (209)
153 KOG3191 Predicted N6-DNA-methy 66.0 22 0.00048 31.8 6.5 38 121-158 133-172 (209)
154 COG2263 Predicted RNA methylas 65.0 3.4 7.4E-05 36.9 1.3 16 3-18 48-63 (198)
155 TIGR00478 tly hemolysin TlyA f 63.1 4 8.7E-05 37.2 1.5 18 3-20 78-95 (228)
156 PRK11933 yebU rRNA (cytosine-C 59.9 48 0.001 33.6 8.6 121 3-154 116-242 (470)
157 COG2264 PrmA Ribosomal protein 58.3 5 0.00011 38.2 1.3 46 84-154 217-263 (300)
158 KOG3178 Hydroxyindole-O-methyl 57.6 18 0.00038 35.2 4.8 103 79-220 223-331 (342)
159 PF01739 CheR: CheR methyltran 55.4 12 0.00025 33.4 3.0 43 90-152 131-173 (196)
160 PF02268 TFIIA_gamma_N: Transc 55.1 12 0.00026 26.1 2.4 22 166-187 13-34 (49)
161 PF04672 Methyltransf_19: S-ad 54.5 30 0.00065 32.5 5.7 90 99-226 154-244 (267)
162 PRK14896 ksgA 16S ribosomal RN 54.3 19 0.00042 33.0 4.4 19 3-21 32-50 (258)
163 PF12147 Methyltransf_20: Puta 53.7 2.1E+02 0.0046 27.5 13.3 61 135-213 230-292 (311)
164 PF06325 PrmA: Ribosomal prote 53.3 7.7 0.00017 36.8 1.6 97 3-155 164-260 (295)
165 PTZ00338 dimethyladenosine tra 49.5 24 0.00051 33.4 4.3 48 3-51 39-98 (294)
166 PF02384 N6_Mtase: N-6 DNA Met 47.7 14 0.00031 34.4 2.5 131 3-155 49-184 (311)
167 PF14904 FAM86: Family of unkn 46.9 26 0.00056 28.1 3.4 32 247-278 67-100 (100)
168 PF08704 GCD14: tRNA methyltra 46.6 70 0.0015 29.6 6.8 20 3-22 43-62 (247)
169 TIGR03704 PrmC_rel_meth putati 45.2 11 0.00024 34.6 1.3 23 133-155 195-217 (251)
170 PF09851 SHOCT: Short C-termin 44.1 19 0.0004 22.4 1.8 19 170-188 6-24 (31)
171 PF03962 Mnd1: Mnd1 family; I 44.0 15 0.00033 32.5 1.9 34 166-200 30-63 (188)
172 PF05724 TPMT: Thiopurine S-me 43.9 1.5E+02 0.0033 26.6 8.4 91 81-222 101-193 (218)
173 PRK03522 rumB 23S rRNA methylu 43.4 13 0.00029 35.1 1.6 18 3-20 176-193 (315)
174 cd08788 CARD_NOD2_2_CARD15 Cas 42.3 24 0.00053 27.1 2.5 41 166-208 14-54 (81)
175 PRK10909 rsmD 16S rRNA m(2)G96 41.1 15 0.00033 32.6 1.5 17 3-19 56-72 (199)
176 PF13679 Methyltransf_32: Meth 40.8 16 0.00036 30.2 1.6 19 2-20 27-45 (141)
177 COG2890 HemK Methylase of poly 40.2 13 0.00028 34.9 0.9 119 3-155 113-239 (280)
178 PRK00050 16S rRNA m(4)C1402 me 39.8 58 0.0013 30.9 5.3 40 131-175 213-252 (296)
179 PRK11524 putative methyltransf 39.6 56 0.0012 30.4 5.1 22 133-154 59-80 (284)
180 PF02375 JmjN: jmjN domain; I 38.5 13 0.00028 23.9 0.4 15 193-207 1-15 (34)
181 PRK04148 hypothetical protein; 38.4 49 0.0011 27.8 4.0 43 2-53 18-73 (134)
182 COG5124 Protein predicted to b 37.0 19 0.00042 31.8 1.4 33 166-199 43-75 (209)
183 TIGR00755 ksgA dimethyladenosi 36.9 21 0.00045 32.5 1.7 18 3-20 32-49 (253)
184 PF05185 PRMT5: PRMT5 arginine 36.1 52 0.0011 33.1 4.5 21 2-22 188-208 (448)
185 COG4976 Predicted methyltransf 35.8 18 0.0004 33.6 1.1 83 92-223 185-269 (287)
186 PF07757 AdoMet_MTase: Predict 35.0 19 0.00041 29.4 1.0 12 2-13 60-71 (112)
187 PRK10079 phosphonate metabolis 34.8 26 0.00056 31.6 2.0 52 127-188 15-72 (241)
188 PRK13168 rumA 23S rRNA m(5)U19 34.4 23 0.00049 35.2 1.7 18 3-20 300-317 (443)
189 PF11899 DUF3419: Protein of u 33.4 60 0.0013 32.0 4.4 57 83-159 281-339 (380)
190 PRK02289 4-oxalocrotonate taut 33.0 55 0.0012 23.0 3.1 40 12-52 11-51 (60)
191 KOG1269 SAM-dependent methyltr 32.6 51 0.0011 32.3 3.7 52 82-155 165-216 (364)
192 PRK13699 putative methylase; P 32.5 71 0.0015 28.9 4.4 21 134-154 52-72 (227)
193 KOG3115 Methyltransferase-like 31.9 25 0.00054 32.1 1.3 15 2-16 62-76 (249)
194 TIGR01444 fkbM_fam methyltrans 31.6 24 0.00051 28.6 1.1 17 3-19 1-17 (143)
195 PF03514 GRAS: GRAS domain fam 31.5 5E+02 0.011 25.3 10.8 42 2-51 112-153 (374)
196 TIGR02085 meth_trns_rumB 23S r 31.4 24 0.00053 34.3 1.3 18 3-20 236-253 (374)
197 PF09445 Methyltransf_15: RNA 31.0 26 0.00057 30.4 1.3 20 3-22 2-21 (163)
198 PF10357 Kin17_mid: Domain of 30.4 54 0.0012 27.4 3.0 26 117-142 9-34 (127)
199 TIGR00095 RNA methyltransferas 29.9 32 0.00069 30.1 1.7 18 3-20 52-69 (189)
200 cd00491 4Oxalocrotonate_Tautom 29.8 1.1E+02 0.0025 20.6 4.3 44 9-53 7-51 (58)
201 PHA00457 inhibitor of host bac 29.5 53 0.0011 23.8 2.4 30 187-218 25-58 (63)
202 smart00400 ZnF_CHCC zinc finge 29.1 45 0.00097 23.1 2.0 19 4-22 24-42 (55)
203 PF11968 DUF3321: Putative met 28.6 2E+02 0.0043 26.3 6.5 51 86-155 92-150 (219)
204 PF09243 Rsm22: Mitochondrial 28.4 69 0.0015 29.8 3.7 81 2-108 35-115 (274)
205 COG2519 GCD14 tRNA(1-methylade 27.7 1.1E+02 0.0024 28.5 4.9 69 84-188 153-221 (256)
206 KOG3463 Transcription initiati 27.2 55 0.0012 26.5 2.4 21 166-186 14-34 (109)
207 KOG1541 Predicted protein carb 26.9 33 0.00072 31.7 1.2 13 3-15 53-65 (270)
208 PF09597 IGR: IGR protein moti 25.5 66 0.0014 23.1 2.3 27 123-149 13-39 (57)
209 COG4627 Uncharacterized protei 25.4 30 0.00065 30.3 0.6 56 80-155 32-87 (185)
210 COG0500 SmtA SAM-dependent met 25.1 1.4E+02 0.003 22.0 4.4 43 94-159 118-160 (257)
211 PF01564 Spermine_synth: Sperm 24.8 93 0.002 28.5 3.8 21 134-154 171-191 (246)
212 smart00545 JmjN Small domain f 24.6 46 0.00099 22.3 1.3 16 192-207 2-17 (42)
213 TIGR00479 rumA 23S rRNA (uraci 24.5 42 0.00091 33.1 1.6 17 3-19 295-311 (431)
214 COG1782 Predicted metal-depend 23.3 1.6E+02 0.0035 30.4 5.4 81 134-220 395-486 (637)
215 PRK01099 rpoK DNA-directed RNA 23.1 1.7E+02 0.0036 21.3 4.1 44 133-184 12-55 (62)
216 PRK11760 putative 23S rRNA C24 22.9 50 0.0011 32.3 1.7 18 2-19 213-230 (357)
217 COG1942 Uncharacterized protei 22.1 2.6E+02 0.0056 20.7 5.1 46 7-52 6-52 (69)
218 PF13260 DUF4051: Protein of u 21.7 1.4E+02 0.003 20.8 3.1 27 122-148 22-48 (54)
219 COG4798 Predicted methyltransf 21.6 96 0.0021 28.2 3.1 21 196-217 183-203 (238)
220 PF10789 Phage_RpbA: Phage RNA 21.2 1.7E+02 0.0036 23.8 4.1 66 107-172 23-101 (108)
221 KOG2899 Predicted methyltransf 21.2 92 0.002 29.3 3.0 47 92-154 163-209 (288)
222 COG1189 Predicted rRNA methyla 21.1 57 0.0012 30.2 1.6 67 133-219 157-224 (245)
223 PLN02672 methionine S-methyltr 20.9 43 0.00092 37.5 0.9 26 133-158 257-282 (1082)
No 1
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=1.5e-92 Score=673.97 Aligned_cols=291 Identities=44% Similarity=0.763 Sum_probs=243.2
Q ss_pred CeEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcC-CCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceee
Q 045960 1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLN-RKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFV 79 (300)
Q Consensus 1 ~~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~-~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~ 79 (300)
+|+|||||||+|+||+.+|+.||++|+++|++.+ +++|+|||||||||+||||+||++||.+.+++.+ .++||+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-----~~~~f~ 91 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-----FRNYFV 91 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-----TTSEEE
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-----CceEEE
Confidence 5899999999999999999999999999998766 6889999999999999999999999999888766 378999
Q ss_pred eecCCccccccCCCCcccEEEeccccccccCCCCCCCC-----------------CHHHHHHHHHhHHHHHHHHHHHHHH
Q 045960 80 AASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGN-----------------ESDVHKAFLNQFESDFSTFLKFRSE 142 (300)
Q Consensus 80 ~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n-----------------~~~v~~ay~~q~~~D~~~fL~~Ra~ 142 (300)
+|||||||+||||++|+||+||++||||||++|+++.+ |++|.+||++||++||.+||++||+
T Consensus 92 ~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 92 SGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999988762 6899999999999999999999999
Q ss_pred hhccCceeEEEEeecCCCCCCCc------hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960 143 ELKSQGRMVLTLLYNDNFHATPG------EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE 216 (300)
Q Consensus 143 EL~~GG~~vl~~~g~~~~~~~~~------~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~ 216 (300)
||+|||+|||+++||++.++... ++|+++|+|||.||+|++||+|+| |+|+|+||++|++++|+++|+|+|++
T Consensus 172 ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsf-niP~Y~ps~eEv~~~I~~~gsF~I~~ 250 (334)
T PF03492_consen 172 ELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSF-NIPIYFPSPEEVRAIIEEEGSFEIEK 250 (334)
T ss_dssp HEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG---SBB---HHHHHHHHHHHTSEEEEE
T ss_pred eeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhce-eCCccCCCHHHHHHHHhcCCCEEEEE
Confidence 99999999999999998654432 999999999999999999999999 99999999999999999999999999
Q ss_pred EEEEeecccCCccCCCCCCCCcccchHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhhhhhcCC---CCeEEE
Q 045960 217 VETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGR---GAYASL 293 (300)
Q Consensus 217 ~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~~~~~~~---~~~~~~ 293 (300)
+|+++.+|.. ++.. .....|..++|+.+++++||++||+|++|||++++|+||+||+++++++ ++.++ ++++++
T Consensus 251 le~~~~~~~~-~~~~-~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~-~~~~~~~~~~~~~i 327 (334)
T PF03492_consen 251 LELFEQPWWS-VPDD-ESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEH-LEKEKSRNMKFVNI 327 (334)
T ss_dssp EEEEEEETCC-TCTT-T-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHTHTT-BEEEEE
T ss_pred EEEEeecccc-cchh-hhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH-HHHhhccCCCcEEE
Confidence 9999977544 1211 1111357889999999999999999999999999999999999999999 76655 889999
Q ss_pred EEEEeeC
Q 045960 294 LISLVKK 300 (300)
Q Consensus 294 ~~~l~r~ 300 (300)
+++|+||
T Consensus 328 ~~~L~Rk 334 (334)
T PF03492_consen 328 VVSLTRK 334 (334)
T ss_dssp EEEEEE-
T ss_pred EEEEeeC
Confidence 9999998
No 2
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=5.1e-88 Score=648.83 Aligned_cols=292 Identities=29% Similarity=0.507 Sum_probs=261.5
Q ss_pred CeEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHH--hhhc--CCCCCc
Q 045960 1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERL--RTEK--GHEFGS 76 (300)
Q Consensus 1 ~~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~--~~~~--~~~~~~ 76 (300)
+++|||||||+|+||+.+|++||++|+++|.+.++++|+|||||||||+||||+||++||.+++.+ ..++ ..+.++
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 479999999999999999999999999999877777899999999999999999999999876532 1110 011246
Q ss_pred eeeeecCCccccccCCCCcccEEEeccccccccCCCCCCC-------C---------CHHHHHHHHHhHHHHHHHHHHHH
Q 045960 77 CFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQG-------N---------ESDVHKAFLNQFESDFSTFLKFR 140 (300)
Q Consensus 77 ~f~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~-------n---------~~~v~~ay~~q~~~D~~~fL~~R 140 (300)
||++|||||||+||||++|+||+||++|||||||+|+++. | +++|.+||++||++||..||++|
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876 2 58999999999999999999999
Q ss_pred HHhhccCceeEEEEeecCCCCCCCc-------hH-HHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCe
Q 045960 141 SEELKSQGRMVLTLLYNDNFHATPG-------EP-MLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSF 212 (300)
Q Consensus 141 a~EL~~GG~~vl~~~g~~~~~~~~~-------~~-l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF 212 (300)
|+||+|||+||++++||++.++..+ +. +.++|++||.||+|++||+|+| |+|+|+||++|++++|+++|+|
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsF-niP~Y~ps~eEv~~~Ie~~gsF 302 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSF-NIPVYAPSLQDFKEVVEANGSF 302 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcc-cCcccCCCHHHHHHHHhhcCCE
Confidence 9999999999999999987665533 33 8999999999999999999999 9999999999999999999999
Q ss_pred eEEEEEEEeecccCCccCCCCCCCCcccchHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhhhhhc--CCCCe
Q 045960 213 DIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDK--GRGAY 290 (300)
Q Consensus 213 ~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~~~~~--~~~~~ 290 (300)
+|+++|+++..|+. +.+.. .|....+..+|+++||++||+|++|||++++|+||+||+++++++ ++. ++.++
T Consensus 303 ~I~~le~~~~~~~~-~~~~~----~d~~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~-~~~~~~~~~~ 376 (386)
T PLN02668 303 AIDKLEVFKGGSPL-VVNEP----DDAAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSH-AKELLEKLQF 376 (386)
T ss_pred EeeeeEEeeccCcc-cccCc----ccHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH-HHhhcccCce
Confidence 99999999998887 23221 255677889999999999999999999999999999999999999 887 88899
Q ss_pred EEEEEEEee
Q 045960 291 ASLLISLVK 299 (300)
Q Consensus 291 ~~~~~~l~r 299 (300)
+++++||+-
T Consensus 377 ~~~~~sL~~ 385 (386)
T PLN02668 377 FHIVASLSF 385 (386)
T ss_pred EEEEEEEec
Confidence 999999874
No 3
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.30 E-value=1.6e-10 Score=105.86 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=122.6
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|+||++|..+..+ .+. .|..+|+.-|+- -+.-... ++. +--| +
T Consensus 32 ~vLDlGcG~G~~~~~l--------~~~-------~p~~~v~gvD~s-~~~~~~a-----------~~~----~~~~---~ 77 (255)
T PRK14103 32 RVVDLGCGPGNLTRYL--------ARR-------WPGAVIEALDSS-PEMVAAA-----------RER----GVDA---R 77 (255)
T ss_pred EEEEEcCCCCHHHHHH--------HHH-------CCCCEEEEEECC-HHHHHHH-----------Hhc----CCcE---E
Confidence 7999999999765432 221 133567777752 1111111 110 1112 2
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA 162 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~ 162 (300)
-+.. ..+.|.+++|+++|+.+|||+.. ...+|+.-++-|+|||++++++.+... .+
T Consensus 78 ~~d~-~~~~~~~~fD~v~~~~~l~~~~d----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~ 133 (255)
T PRK14103 78 TGDV-RDWKPKPDTDVVVSNAALQWVPE----------------------HADLLVRWVDELAPGSWIAVQVPGNFD-AP 133 (255)
T ss_pred EcCh-hhCCCCCCceEEEEehhhhhCCC----------------------HHHHHHHHHHhCCCCcEEEEEcCCCcC-Ch
Confidence 2443 35667889999999999999543 455667778899999999998765322 11
Q ss_pred CCchHHHHHHHHHHHcCCCchhhhc-cccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccc
Q 045960 163 TPGEPMLMVLKDMISEGLAEESKVK-SFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYA 241 (300)
Q Consensus 163 ~~~~~l~~al~~mv~eG~i~~e~~d-~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~ 241 (300)
....+..+..++.+...--+ .+ ..+.++.+++++..++++.| |++...+..... . ..
T Consensus 134 -----~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~--~-------------~~ 191 (255)
T PRK14103 134 -----SHAAVRALARREPWAKLLRDIPF-RVGAVVQTPAGYAELLTDAG-CKVDAWETTYVH--Q-------------LT 191 (255)
T ss_pred -----hHHHHHHHhccCchhHHhccccc-ccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeee--e-------------CC
Confidence 12333444433333211101 13 33556789999999999999 887665543211 1 01
Q ss_pred hHHHHHHHHHHh-hhhHHHhhhChhHHHHHHHHHHHHhhhh
Q 045960 242 RGKYVTKHVRAV-GESFLANLFDDATVDEIHRRFATKVTDV 281 (300)
Q Consensus 242 ~~~~~a~~iRA~-~ep~l~~hfge~i~delf~r~~~~~~~~ 281 (300)
....+..|+++. +.++++ .++++.++++-+.+.+.+++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~ 231 (255)
T PRK14103 192 GEDPVLDWITGTALRPVRE-RLSDDSWEQFRAELIPLLREA 231 (255)
T ss_pred Cchhhhhhhhccchhhhhh-hCCHHHHHHHHHHHHHHHHHH
Confidence 134677788854 466766 499888999999999988876
No 4
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.26 E-value=6e-10 Score=101.88 Aligned_cols=218 Identities=14% Similarity=0.212 Sum_probs=129.7
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCce-eee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSC-FVA 80 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~-f~~ 80 (300)
-+|+|+||++|..+..+... .|.-+|+..|+-.. .-...+ + . .+++ |.
T Consensus 33 ~~vLDiGcG~G~~~~~la~~---------------~~~~~v~gvD~s~~-~i~~a~----------~-~---~~~~~~~- 81 (258)
T PRK01683 33 RYVVDLGCGPGNSTELLVER---------------WPAARITGIDSSPA-MLAEAR----------S-R---LPDCQFV- 81 (258)
T ss_pred CEEEEEcccCCHHHHHHHHH---------------CCCCEEEEEECCHH-HHHHHH----------H-h---CCCCeEE-
Confidence 37999999999887644321 12357777774321 111111 0 0 0111 22
Q ss_pred ecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC
Q 045960 81 ASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF 160 (300)
Q Consensus 81 ~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~ 160 (300)
.+++- .+.|++++|+++|+.++||+.+ ...+|+.-.+-|+|||++++++.+...
T Consensus 82 --~~d~~-~~~~~~~fD~v~~~~~l~~~~d----------------------~~~~l~~~~~~LkpgG~~~~~~~~~~~- 135 (258)
T PRK01683 82 --EADIA-SWQPPQALDLIFANASLQWLPD----------------------HLELFPRLVSLLAPGGVLAVQMPDNLD- 135 (258)
T ss_pred --ECchh-ccCCCCCccEEEEccChhhCCC----------------------HHHHHHHHHHhcCCCcEEEEECCCCCC-
Confidence 23332 3457789999999999999644 356777788899999999998643221
Q ss_pred CCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCccc
Q 045960 161 HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKY 240 (300)
Q Consensus 161 ~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~ 240 (300)
......+.++.....+.+.-...- ..+.+.++++++...+.+.| +.++..+.. +.. ..
T Consensus 136 -----~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~---~~~------------~~ 193 (258)
T PRK01683 136 -----EPSHVLMREVAENGPWEQNLPDRG-ARRAPLPPPHAYYDALAPAA-CRVDIWHTT---YYH------------PM 193 (258)
T ss_pred -----CHHHHHHHHHHccCchHHHhcccc-ccCcCCCCHHHHHHHHHhCC-Cceeeeeee---eee------------ec
Confidence 112234445544433332211222 34557789999999999998 555443332 111 11
Q ss_pred chHHHHHHHHHHh-hhhHHHhhhChhHHHHHHHHHHHHhhhhhhhcCC----CCeEEEEEEEee
Q 045960 241 ARGKYVTKHVRAV-GESFLANLFDDATVDEIHRRFATKVTDVVLDKGR----GAYASLLISLVK 299 (300)
Q Consensus 241 ~~~~~~a~~iRA~-~ep~l~~hfge~i~delf~r~~~~~~~~~~~~~~----~~~~~~~~~l~r 299 (300)
...+.+..|++++ +.+++ .+++++..+++-+.|.+.+.+..+.... ..|.-++++-+|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 256 (258)
T PRK01683 194 PSAQAIVEWVKGTGLRPFL-DPLTESEQAAFLAAYLARIAEAYPLQADGKVLLAFPRLFIVARR 256 (258)
T ss_pred CCchhhhhhhhhccHHHHH-hhCCHHHHHHHHHHHHHHHHHHCCCCCCCcEEcccceEEEEEEe
Confidence 1245677788865 46666 5699999999999999988876222222 334445555554
No 5
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.82 E-value=4.3e-08 Score=93.50 Aligned_cols=151 Identities=19% Similarity=0.180 Sum_probs=92.8
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+||++|..++.+.. .+ +. +|+--| |+..+..-++..... .+.. .++- -+
T Consensus 125 ~VLDIGCG~G~~~~~la~------------~g---~~-~V~GiD-~S~~~l~q~~a~~~~-------~~~~-~~i~--~~ 177 (322)
T PRK15068 125 TVLDVGCGNGYHMWRMLG------------AG---AK-LVVGID-PSQLFLCQFEAVRKL-------LGND-QRAH--LL 177 (322)
T ss_pred EEEEeccCCcHHHHHHHH------------cC---CC-EEEEEc-CCHHHHHHHHHHHHh-------cCCC-CCeE--EE
Confidence 799999999988874321 12 21 477777 444443322222111 0100 1222 23
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA 162 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~ 162 (300)
++++-.--+ ++++|+|+|..+|||+.. ...+|+.-++-|+|||++++..........
T Consensus 178 ~~d~e~lp~-~~~FD~V~s~~vl~H~~d----------------------p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~ 234 (322)
T PRK15068 178 PLGIEQLPA-LKAFDTVFSMGVLYHRRS----------------------PLDHLKQLKDQLVPGGELVLETLVIDGDEN 234 (322)
T ss_pred eCCHHHCCC-cCCcCEEEECChhhccCC----------------------HHHHHHHHHHhcCCCcEEEEEEEEecCCCc
Confidence 344432212 678999999999998544 456788888999999999998655443221
Q ss_pred CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960 163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF 220 (300)
Q Consensus 163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~ 220 (300)
.. ++..+.+..+ .-.++.||.+++..+++++| |++.+++..
T Consensus 235 ~~---------------l~p~~~y~~~-~~~~~lps~~~l~~~L~~aG-F~~i~~~~~ 275 (322)
T PRK15068 235 TV---------------LVPGDRYAKM-RNVYFIPSVPALKNWLERAG-FKDVRIVDV 275 (322)
T ss_pred cc---------------cCchhHHhcC-ccceeCCCHHHHHHHHHHcC-CceEEEEeC
Confidence 10 1222223344 44456789999999999999 998777644
No 6
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.75 E-value=9.8e-07 Score=87.87 Aligned_cols=189 Identities=18% Similarity=0.241 Sum_probs=114.1
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+||++|..++.+. +. . ..+|+--|+.. +.-...+ ... .+.. .+ +.-+
T Consensus 269 ~vLDiGcG~G~~~~~la--------~~---~-----~~~v~gvDiS~-~~l~~A~------~~~---~~~~-~~--v~~~ 319 (475)
T PLN02336 269 KVLDVGCGIGGGDFYMA--------EN---F-----DVHVVGIDLSV-NMISFAL------ERA---IGRK-CS--VEFE 319 (475)
T ss_pred EEEEEeccCCHHHHHHH--------Hh---c-----CCEEEEEECCH-HHHHHHH------HHh---hcCC-Cc--eEEE
Confidence 79999999998665432 11 0 24677777532 1111111 000 0110 11 2223
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA 162 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~ 162 (300)
-+.+....+|++++|+++|..++||+.. ...+|+.-++-|+|||++++....+....+
T Consensus 320 ~~d~~~~~~~~~~fD~I~s~~~l~h~~d----------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 377 (475)
T PLN02336 320 VADCTKKTYPDNSFDVIYSRDTILHIQD----------------------KPALFRSFFKWLKPGGKVLISDYCRSPGTP 377 (475)
T ss_pred EcCcccCCCCCCCEEEEEECCcccccCC----------------------HHHHHHHHHHHcCCCeEEEEEEeccCCCCC
Confidence 4566777789999999999999999544 356677788899999999999876654322
Q ss_pred CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccch
Q 045960 163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYAR 242 (300)
Q Consensus 163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~ 242 (300)
. ..+...+. . .-...++.+++.++++++| |++..++.+... +
T Consensus 378 ~--~~~~~~~~---~--------------~g~~~~~~~~~~~~l~~aG-F~~i~~~d~~~~------------------~ 419 (475)
T PLN02336 378 S--PEFAEYIK---Q--------------RGYDLHDVQAYGQMLKDAG-FDDVIAEDRTDQ------------------F 419 (475)
T ss_pred c--HHHHHHHH---h--------------cCCCCCCHHHHHHHHHHCC-CeeeeeecchHH------------------H
Confidence 1 11111111 1 1124568999999999999 988765533211 2
Q ss_pred HHHHHHHHHHh---hhhHHHhhhChhHHHHHHHHHHHHhhhh
Q 045960 243 GKYVTKHVRAV---GESFLANLFDDATVDEIHRRFATKVTDV 281 (300)
Q Consensus 243 ~~~~a~~iRA~---~ep~l~~hfge~i~delf~r~~~~~~~~ 281 (300)
...+..+..++ .+.++ ..+|++..+.+...+.+.+...
T Consensus 420 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 460 (475)
T PLN02336 420 LQVLQRELDAVEKEKDEFI-SDFSEEDYNDIVGGWKAKLVRS 460 (475)
T ss_pred HHHHHHHHHHHHhCHHHHH-HhcCHHHHHHHHHhHHHHHhhh
Confidence 23333333322 23333 3488888888888888887765
No 7
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.73 E-value=8e-07 Score=81.02 Aligned_cols=116 Identities=11% Similarity=0.193 Sum_probs=75.1
Q ss_pred ccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCC
Q 045960 85 SFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATP 164 (300)
Q Consensus 85 SFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~ 164 (300)
..-.--+|++++|+|+|+.++||..+ ...+|+.-.+-|+|||++++...+.++-
T Consensus 93 d~~~~~~~~~~fD~V~s~~~l~~~~d----------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~---- 146 (251)
T PRK10258 93 DIESLPLATATFDLAWSNLAVQWCGN----------------------LSTALRELYRVVRPGGVVAFTTLVQGSL---- 146 (251)
T ss_pred CcccCcCCCCcEEEEEECchhhhcCC----------------------HHHHHHHHHHHcCCCeEEEEEeCCCCch----
Confidence 33333478899999999999999554 4566777789999999999998877542
Q ss_pred chHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccchHH
Q 045960 165 GEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGK 244 (300)
Q Consensus 165 ~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 244 (300)
.-+.++|..+ + .- ....-+++.+|+...+...+ +++ ..+.+...++. +.
T Consensus 147 -~el~~~~~~~---~--------~~-~~~~~~~~~~~l~~~l~~~~-~~~-~~~~~~~~f~~----------------~~ 195 (251)
T PRK10258 147 -PELHQAWQAV---D--------ER-PHANRFLPPDAIEQALNGWR-YQH-HIQPITLWFDD----------------AL 195 (251)
T ss_pred -HHHHHHHHHh---c--------cC-CccccCCCHHHHHHHHHhCC-cee-eeeEEEEECCC----------------HH
Confidence 2244555432 1 11 12234578999999998766 443 34444444322 45
Q ss_pred HHHHHHHHhhhhH
Q 045960 245 YVTKHVRAVGESF 257 (300)
Q Consensus 245 ~~a~~iRA~~ep~ 257 (300)
.+...+|......
T Consensus 196 ~~l~~lk~~G~~~ 208 (251)
T PRK10258 196 SAMRSLKGIGATH 208 (251)
T ss_pred HHHHHHHHhCCCC
Confidence 5666677655443
No 8
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.72 E-value=9.2e-08 Score=86.76 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=95.5
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+||++|..+..+.+.+ ..|..+|+.-|+-. +.-...+ ..... .+.. .+ +..+
T Consensus 56 ~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~-~ml~~a~------~~~~~-~~~~-~~--v~~~ 111 (239)
T TIGR00740 56 NVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQ-PMVERCR------QHIAA-YHSE-IP--VEIL 111 (239)
T ss_pred EEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-HHHHHHH------HHHHh-cCCC-CC--eEEE
Confidence 79999999998776554321 12457788887522 1111111 11111 1110 12 2224
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA 162 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~ 162 (300)
-+++..--+| +.|++++++++||++. .|...+|+.-.+-|+|||++++.-..+.+...
T Consensus 112 ~~d~~~~~~~--~~d~v~~~~~l~~~~~--------------------~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~ 169 (239)
T TIGR00740 112 CNDIRHVEIK--NASMVILNFTLQFLPP--------------------EDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK 169 (239)
T ss_pred ECChhhCCCC--CCCEEeeecchhhCCH--------------------HHHHHHHHHHHHhcCCCeEEEEeecccCCCHh
Confidence 5666543333 5789999999999643 24567888899999999999887544433221
Q ss_pred CCchHHHHHHHHHHH-cCCCchhhh----ccccCCCcccCCHHHHHHHHHhcCCee
Q 045960 163 TPGEPMLMVLKDMIS-EGLAEESKV----KSFEDFPIYRASVDEVKQIVKKEGSFD 213 (300)
Q Consensus 163 ~~~~~l~~al~~mv~-eG~i~~e~~----d~f~~~P~y~~s~eE~~~~i~~~gsF~ 213 (300)
.. +.+...+..... +| .+++++ +.+ .-.....|++|++++++++| |+
T Consensus 170 ~~-~~~~~~~~~~~~~~g-~~~~~~~~~~~~~-~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 170 IN-HLLIDLHHQFKRANG-YSELEISQKRTAL-ENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred HH-HHHHHHHHHHHHHcC-CCHHHHHHHHHHH-hccCCCCCHHHHHHHHHHcC-Cc
Confidence 11 344444444443 34 355443 333 23345579999999999999 65
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.72 E-value=5.9e-07 Score=83.16 Aligned_cols=195 Identities=16% Similarity=0.216 Sum_probs=112.0
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
-+|.|+||+.|..+..+. +.. ..+|+..|+..+ .....+.. ... ..+ +..
T Consensus 54 ~~VLDiGcG~G~~a~~la--------~~~--------~~~v~giD~s~~-~~~~a~~~----------~~~-~~~--i~~ 103 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYIN--------EKY--------GAHVHGVDICEK-MVNIAKLR----------NSD-KNK--IEF 103 (263)
T ss_pred CEEEEEcCCCChhhHHHH--------hhc--------CCEEEEEECCHH-HHHHHHHH----------cCc-CCc--eEE
Confidence 379999999999876543 110 246777775321 11111110 000 011 222
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~ 161 (300)
+.+++...-+|++++|+++|+.++|+++. .|...+|+.-++-|+|||+++++-....+..
T Consensus 104 ~~~D~~~~~~~~~~FD~V~s~~~l~h~~~--------------------~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~ 163 (263)
T PTZ00098 104 EANDILKKDFPENTFDMIYSRDAILHLSY--------------------ADKKKLFEKCYKWLKPNGILLITDYCADKIE 163 (263)
T ss_pred EECCcccCCCCCCCeEEEEEhhhHHhCCH--------------------HHHHHHHHHHHHHcCCCcEEEEEEecccccc
Confidence 44566666689999999999988776331 2467788888999999999999866554321
Q ss_pred CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccc
Q 045960 162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYA 241 (300)
Q Consensus 162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~ 241 (300)
. ....+.+.... . . +..++++|+.++++++| |+....+-....|.. .
T Consensus 164 ~-----~~~~~~~~~~~----------~-~--~~~~~~~~~~~~l~~aG-F~~v~~~d~~~~~~~--------------~ 210 (263)
T PTZ00098 164 N-----WDEEFKAYIKK----------R-K--YTLIPIQEYGDLIKSCN-FQNVVAKDISDYWLE--------------L 210 (263)
T ss_pred C-----cHHHHHHHHHh----------c-C--CCCCCHHHHHHHHHHCC-CCeeeEEeCcHHHHH--------------H
Confidence 1 11122221111 1 1 23469999999999999 887666543222211 0
Q ss_pred hHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhh
Q 045960 242 RGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDV 281 (300)
Q Consensus 242 ~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~ 281 (300)
+ ..+...+++- +.-+.+.+|++..+.+-.-+.+.+...
T Consensus 211 ~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (263)
T PTZ00098 211 L-QVELKKLEEK-KEEFLKLYSEKEYNSLKDGWTRKIKDT 248 (263)
T ss_pred H-HHHHHHHHHh-HHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 1 1222223322 233444588877777777776666544
No 10
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.71 E-value=4.7e-07 Score=81.50 Aligned_cols=165 Identities=12% Similarity=0.229 Sum_probs=103.8
Q ss_pred cccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchH
Q 045960 88 TRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEP 167 (300)
Q Consensus 88 ~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~ 167 (300)
...-|....|++||+++||||.+ +...|..--.+|.|||.+-++|++.-+. +
T Consensus 85 ~~w~p~~~~dllfaNAvlqWlpd----------------------H~~ll~rL~~~L~Pgg~LAVQmPdN~de-p----- 136 (257)
T COG4106 85 RTWKPEQPTDLLFANAVLQWLPD----------------------HPELLPRLVSQLAPGGVLAVQMPDNLDE-P----- 136 (257)
T ss_pred hhcCCCCccchhhhhhhhhhccc----------------------cHHHHHHHHHhhCCCceEEEECCCccCc-h-----
Confidence 34568899999999999999544 3445555667899999999999755332 2
Q ss_pred HHHHHHHHHHcCCCchhhhccccCC-CcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccchHHHH
Q 045960 168 MLMVLKDMISEGLAEESKVKSFEDF-PIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYV 246 (300)
Q Consensus 168 l~~al~~mv~eG~i~~e~~d~f~~~-P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 246 (300)
-..++++.++++-... ++.++ .+ =---+|+.-|-.++..-++ +|+--++ -+.. . -.++..+
T Consensus 137 sH~~mr~~A~~~p~~~-~l~~~-~~~r~~v~s~a~Yy~lLa~~~~-rvDiW~T---~Y~h---~---------l~~a~aI 198 (257)
T COG4106 137 SHRLMRETADEAPFAQ-ELGGR-GLTRAPLPSPAAYYELLAPLAC-RVDIWHT---TYYH---Q---------LPGADAI 198 (257)
T ss_pred hHHHHHHHHhcCchhh-hhCcc-ccccCCCCCHHHHHHHhCcccc-eeeeeee---eccc---c---------CCCccch
Confidence 2356666666653332 23332 11 0112577888888876652 2222222 2111 1 1235689
Q ss_pred HHHHHHhhh-hHHHhhhChhHHHHHHHHHHHHhhhhhhhcCCCC----eEEEEEEEee
Q 045960 247 TKHVRAVGE-SFLANLFDDATVDEIHRRFATKVTDVVLDKGRGA----YASLLISLVK 299 (300)
Q Consensus 247 a~~iRA~~e-p~l~~hfge~i~delf~r~~~~~~~~~~~~~~~~----~~~~~~~l~r 299 (300)
..|+++... |+|.. ++++-...+-++|..++.+..+....++ |.-++|+-+|
T Consensus 199 vdWvkgTgLrP~L~~-L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~ 255 (257)
T COG4106 199 VDWVKGTGLRPYLDR-LDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATR 255 (257)
T ss_pred hhheeccccceeccc-cCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEec
Confidence 999996654 88887 8999999999999999998743333332 3345555544
No 11
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.71 E-value=4e-08 Score=87.47 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=69.9
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
.+|.|+||++|..+..+... + |..++...|...+.-+..-+.++. +-.|
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~------------~---~~~~~~~~D~~~~~~~~~~~~~~~-------------~~~~--- 84 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKR------------F---PQAEFIALDISAGMLAQAKTKLSE-------------NVQF--- 84 (240)
T ss_pred CeEEEECCCccHHHHHHHHh------------C---CCCcEEEEeChHHHHHHHHHhcCC-------------CCeE---
Confidence 37999999999876644321 1 345678888644333222222210 1112
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND 158 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~ 158 (300)
+-+++....+|++++|+++++.++||+.. ...+|+...+-|+|||.+++...+.+
T Consensus 85 ~~~d~~~~~~~~~~fD~vi~~~~l~~~~~----------------------~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 85 ICGDAEKLPLEDSSFDLIVSNLALQWCDD----------------------LSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred EecchhhCCCCCCceeEEEEhhhhhhccC----------------------HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 33455566678999999999999999644 46788889999999999998876543
No 12
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.67 E-value=3.4e-07 Score=87.15 Aligned_cols=93 Identities=24% Similarity=0.219 Sum_probs=63.7
Q ss_pred ccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHH
Q 045960 89 RLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPM 168 (300)
Q Consensus 89 ~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l 168 (300)
.+-+.+++|.|+|+.+|||+.. ...+|+.-++-|+|||.||+...........
T Consensus 182 ~lp~~~~FD~V~s~gvL~H~~d----------------------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~----- 234 (314)
T TIGR00452 182 QLHELYAFDTVFSMGVLYHRKS----------------------PLEHLKQLKHQLVIKGELVLETLVIDGDLNT----- 234 (314)
T ss_pred HCCCCCCcCEEEEcchhhccCC----------------------HHHHHHHHHHhcCCCCEEEEEEEEecCcccc-----
Confidence 3334568999999999999543 3557788899999999999987543321110
Q ss_pred HHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960 169 LMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF 220 (300)
Q Consensus 169 ~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~ 220 (300)
+ +...+....+ .-.++.||.+++..++++.| |+..++...
T Consensus 235 --~--------l~p~~ry~k~-~nv~flpS~~~L~~~L~~aG-F~~V~i~~~ 274 (314)
T TIGR00452 235 --V--------LVPKDRYAKM-KNVYFIPSVSALKNWLEKVG-FENFRILDV 274 (314)
T ss_pred --c--------cCchHHHHhc-cccccCCCHHHHHHHHHHCC-CeEEEEEec
Confidence 0 1122223334 44566789999999999999 887665544
No 13
>PRK08317 hypothetical protein; Provisional
Probab=98.66 E-value=5.1e-06 Score=73.63 Aligned_cols=218 Identities=18% Similarity=0.109 Sum_probs=113.0
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
-+|.|+||+.|..+..+.... .|.-+++.-|+-.+-....-+. . .... .++ ..
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~~~a~~~---------~-~~~~-~~~--~~ 73 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAMLALAKER---------A-AGLG-PNV--EF 73 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHHHHHHHH---------h-hCCC-Cce--EE
Confidence 379999999998666443322 1234677777532111111000 0 0000 111 11
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC-
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF- 160 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~- 160 (300)
+.+.+...-+|++++|++++..++||+.+ ...+|+.-.+-|+|||.+++....-...
T Consensus 74 ~~~d~~~~~~~~~~~D~v~~~~~~~~~~~----------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 131 (241)
T PRK08317 74 VRGDADGLPFPDGSFDAVRSDRVLQHLED----------------------PARALAEIARVLRPGGRVVVLDTDWDTLV 131 (241)
T ss_pred EecccccCCCCCCCceEEEEechhhccCC----------------------HHHHHHHHHHHhcCCcEEEEEecCCCcee
Confidence 22333333467889999999999999655 4566777888999999999876432111
Q ss_pred -CCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcc
Q 045960 161 -HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDK 239 (300)
Q Consensus 161 -~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~ 239 (300)
.+.....+...+..+.. .+ .-| .+..++...++++| |+..+++.....+... +.
T Consensus 132 ~~~~~~~~~~~~~~~~~~----------~~-~~~---~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~~----------~~ 186 (241)
T PRK08317 132 WHSGDRALMRKILNFWSD----------HF-ADP---WLGRRLPGLFREAG-LTDIEVEPYTLIETDL----------KE 186 (241)
T ss_pred ecCCChHHHHHHHHHHHh----------cC-CCC---cHHHHHHHHHHHcC-CCceeEEEEEEeccCc----------ch
Confidence 00010223333222211 11 111 23568999999998 8888877775543220 01
Q ss_pred cchHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhhhhhcCCCCeEEEEEEEeeC
Q 045960 240 YARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLLISLVKK 300 (300)
Q Consensus 240 ~~~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~l~r~ 300 (300)
......+...++.+.+ .....++-++++++.+++..... .-.-...+++...||
T Consensus 187 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~k 240 (241)
T PRK08317 187 ADKGFGLIRAARRAVE---AGGISADEADAWLADLAQLARAG----EFFFSVTGFLVVGRK 240 (241)
T ss_pred hhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHhcC----CEEEEEEEEEEEEeC
Confidence 1112233333443322 12234555677777666654432 111235556665554
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.66 E-value=1.2e-07 Score=85.20 Aligned_cols=168 Identities=15% Similarity=0.230 Sum_probs=92.4
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|+||++|..+..+... . .|..+|+..|+-. ..-...+ ..... .+ ..++ .-+
T Consensus 48 ~vLDiGcG~G~~~~~la~~--------~------~~~~~v~gvD~s~-~~~~~a~------~~~~~-~~--~~~v--~~~ 101 (231)
T TIGR02752 48 SALDVCCGTADWSIALAEA--------V------GPEGHVIGLDFSE-NMLSVGR------QKVKD-AG--LHNV--ELV 101 (231)
T ss_pred EEEEeCCCcCHHHHHHHHH--------h------CCCCEEEEEECCH-HHHHHHH------HHHHh-cC--CCce--EEE
Confidence 7999999999977643321 1 1345777777532 1111111 11111 01 1222 223
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA 162 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~ 162 (300)
.+....--+|++++|+|+++.++||++. ...+|+.-.+-|+|||++++.-.+.++...
T Consensus 102 ~~d~~~~~~~~~~fD~V~~~~~l~~~~~----------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 159 (231)
T TIGR02752 102 HGNAMELPFDDNSFDYVTIGFGLRNVPD----------------------YMQVLREMYRVVKPGGKVVCLETSQPTIPG 159 (231)
T ss_pred EechhcCCCCCCCccEEEEecccccCCC----------------------HHHHHHHHHHHcCcCeEEEEEECCCCCChH
Confidence 4444444468899999999999999654 345677778899999999876655443211
Q ss_pred CCchHHHHHHHHHHH--cCCCchh--hhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960 163 TPGEPMLMVLKDMIS--EGLAEES--KVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF 220 (300)
Q Consensus 163 ~~~~~l~~al~~mv~--eG~i~~e--~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~ 220 (300)
.. ......+..+.. .+.+..+ +.......-..+++.+|+++.+++.| |++.+++.+
T Consensus 160 ~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~ 219 (231)
T TIGR02752 160 FK-QLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAG-FKDVEVKSY 219 (231)
T ss_pred HH-HHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence 00 111111111000 0011100 00000011235689999999999999 998877665
No 15
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.61 E-value=1.2e-06 Score=81.15 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=62.6
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM 170 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~ 170 (300)
+|++|+|++++++++||+.+ ...+|+.-++-|||||++++.-.+.++... . ..+..
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d----------------------~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~-~-~~~~~ 196 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVD----------------------RLKAMQEMYRVLKPGSRVSILDFNKSTQPF-T-TSMQE 196 (261)
T ss_pred CCCCCEeEEEEecccccCCC----------------------HHHHHHHHHHHcCcCcEEEEEECCCCCcHH-H-HHHHH
Confidence 78999999999999999543 466788889999999999998777654311 0 11111
Q ss_pred HHHH-----HHH-cCCCchhhhccccCCC---cccCCHHHHHHHHHhcCCeeEEEEE
Q 045960 171 VLKD-----MIS-EGLAEESKVKSFEDFP---IYRASVDEVKQIVKKEGSFDIQEVE 218 (300)
Q Consensus 171 al~~-----mv~-eG~i~~e~~d~f~~~P---~y~~s~eE~~~~i~~~gsF~I~~~e 218 (300)
-+.+ +.. -|. . +.+..++ -.+++++|+.+.+++.| |++.+..
T Consensus 197 ~~~~~~~~~~~~~~~~--~---~~y~~l~~s~~~f~s~~el~~ll~~aG-F~~~~~~ 247 (261)
T PLN02233 197 WMIDNVVVPVATGYGL--A---KEYEYLKSSINEYLTGEELEKLALEAG-FSSAKHY 247 (261)
T ss_pred HHHhhhhhHHHHHhCC--h---HHHHHHHHHHHhcCCHHHHHHHHHHCC-CCEEEEE
Confidence 1100 000 021 1 1110011 13689999999999999 8866543
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=98.60 E-value=2.9e-06 Score=81.43 Aligned_cols=100 Identities=12% Similarity=0.208 Sum_probs=64.5
Q ss_pred CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960 84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT 163 (300)
Q Consensus 84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~ 163 (300)
+...+--||++++|+|+|..++|++.+ ...+|+.-.+-|||||++++......+..+.
T Consensus 175 ~D~~~~~~~~~~FD~V~s~~~~~h~~d----------------------~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~ 232 (340)
T PLN02244 175 ADALNQPFEDGQFDLVWSMESGEHMPD----------------------KRKFVQELARVAAPGGRIIIVTWCHRDLEPG 232 (340)
T ss_pred cCcccCCCCCCCccEEEECCchhccCC----------------------HHHHHHHHHHHcCCCcEEEEEEecccccccc
Confidence 444444578999999999999998533 3466777788899999999986554332211
Q ss_pred Cc---hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960 164 PG---EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE 218 (300)
Q Consensus 164 ~~---~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e 218 (300)
.. ..-...+..+. ..+ .+|. ..+.+|+.+++++.| |...+.+
T Consensus 233 ~~~l~~~~~~~~~~i~----------~~~-~~p~-~~s~~~~~~~l~~aG-f~~v~~~ 277 (340)
T PLN02244 233 ETSLKPDEQKLLDKIC----------AAY-YLPA-WCSTSDYVKLAESLG-LQDIKTE 277 (340)
T ss_pred cccCCHHHHHHHHHHH----------hhc-cCCC-CCCHHHHHHHHHHCC-CCeeEee
Confidence 10 11111222111 223 3442 358999999999999 8876554
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.52 E-value=4.2e-07 Score=75.93 Aligned_cols=90 Identities=24% Similarity=0.266 Sum_probs=63.9
Q ss_pred cccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchH
Q 045960 88 TRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEP 167 (300)
Q Consensus 88 ~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~ 167 (300)
...+|++++|+|+|+.+|||+.. +..+|+.-.+=|+|||++++....+...
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d----------------------~~~~l~~l~~~LkpgG~l~~~~~~~~~~------- 121 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPD----------------------PEEFLKELSRLLKPGGYLVISDPNRDDP------- 121 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSH----------------------HHHHHHHHHHCEEEEEEEEEEEEBTTSH-------
T ss_pred hhhccccchhhHhhHHHHhhccc----------------------HHHHHHHHHHhcCCCCEEEEEEcCCcch-------
Confidence 44468899999999999999554 6788889999999999999999877431
Q ss_pred HHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960 168 MLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE 216 (300)
Q Consensus 168 l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~ 216 (300)
....+..+ .... .. +--..+.+.++++.++++.| |+|.+
T Consensus 122 ~~~~~~~~---~~~~---~~---~~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 122 SPRSFLKW---RYDR---PY---GGHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp HHHHHHHC---CGTC---HH---TTTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred hhhHHHhc---CCcC---cc---CceeccCCHHHHHHHHHHCC-CEEEE
Confidence 11222221 1111 01 01125669999999999999 88754
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.46 E-value=5.3e-06 Score=76.08 Aligned_cols=99 Identities=17% Similarity=0.271 Sum_probs=63.9
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM 170 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~ 170 (300)
+|++++|++++..+|||+.. | ..+|+.-++-|+|||++++.+..... -.+..
T Consensus 108 ~~~~~fD~V~~~~vl~~~~~-------~---------------~~~l~~~~~~LkpgG~l~i~~~n~~~------~~~~~ 159 (255)
T PRK11036 108 HLETPVDLILFHAVLEWVAD-------P---------------KSVLQTLWSVLRPGGALSLMFYNANG------LLMHN 159 (255)
T ss_pred hcCCCCCEEEehhHHHhhCC-------H---------------HHHHHHHHHHcCCCeEEEEEEECccH------HHHHH
Confidence 46789999999999999765 2 34556667789999999988754321 01111
Q ss_pred HHH---HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960 171 VLK---DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN 221 (300)
Q Consensus 171 al~---~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~ 221 (300)
.+. +.+..|+... ..+.-.|.+..+++|+.+++++.| |++.+..-+.
T Consensus 160 ~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~l~~~l~~aG-f~~~~~~gi~ 209 (255)
T PRK11036 160 MVAGNFDYVQAGMPKR---KKRTLSPDYPLDPEQVYQWLEEAG-WQIMGKTGVR 209 (255)
T ss_pred HHccChHHHHhcCccc---cccCCCCCCCCCHHHHHHHHHHCC-CeEeeeeeEE
Confidence 111 1122232211 112024667789999999999998 9988766554
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.43 E-value=4.7e-06 Score=76.25 Aligned_cols=162 Identities=18% Similarity=0.216 Sum_probs=93.0
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|+||++|.+++.+...+ ..|..+|+.-|. +-+.-...+. .... .+.. .++ ..+
T Consensus 59 ~vLDlGcGtG~~~~~l~~~~-------------~~~~~~v~gvD~-S~~ml~~A~~------~~~~-~~~~-~~v--~~~ 114 (247)
T PRK15451 59 QVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDN-SPAMIERCRR------HIDA-YKAP-TPV--DVI 114 (247)
T ss_pred EEEEEcccCCHHHHHHHHhc-------------CCCCCeEEEEeC-CHHHHHHHHH------HHHh-cCCC-CCe--EEE
Confidence 79999999999876543211 123466776662 1122222211 1111 0110 111 123
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA 162 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~ 162 (300)
.+++..- |....|+++++.++||+.. .+...+|+.-++-|+|||.+++.=.-......
T Consensus 115 ~~d~~~~--~~~~~D~vv~~~~l~~l~~--------------------~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~ 172 (247)
T PRK15451 115 EGDIRDI--AIENASMVVLNFTLQFLEP--------------------SERQALLDKIYQGLNPGGALVLSEKFSFEDAK 172 (247)
T ss_pred eCChhhC--CCCCCCEEehhhHHHhCCH--------------------HHHHHHHHHHHHhcCCCCEEEEEEecCCCcch
Confidence 4555432 3345899999999999653 12456778889999999999987432322211
Q ss_pred CCchHHHHHHHHHHHcCCCchhhhcc----ccCCCcccCCHHHHHHHHHhcCCee
Q 045960 163 TPGEPMLMVLKDMISEGLAEESKVKS----FEDFPIYRASVDEVKQIVKKEGSFD 213 (300)
Q Consensus 163 ~~~~~l~~al~~mv~eG~i~~e~~d~----f~~~P~y~~s~eE~~~~i~~~gsF~ 213 (300)
.++.+...+.++....=.+++++.. .++ -...-|+++..+++++.| |+
T Consensus 173 -~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~-~~~~~~~~~~~~~L~~aG-F~ 224 (247)
T PRK15451 173 -VGELLFNMHHDFKRANGYSELEISQKRSMLEN-VMLTDSVETHKARLHKAG-FE 224 (247)
T ss_pred -hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-hcccCCHHHHHHHHHHcC-ch
Confidence 1255666777766554566655533 212 112248999999999999 54
No 20
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.42 E-value=4.2e-06 Score=74.69 Aligned_cols=83 Identities=14% Similarity=0.245 Sum_probs=61.1
Q ss_pred CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960 94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK 173 (300)
Q Consensus 94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~ 173 (300)
+++|+++|..++|++.+ +..+|+.-++-|+|||++++.-.......
T Consensus 66 ~~fD~I~~~~~l~~~~~----------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------------ 111 (224)
T smart00828 66 DTYDLVFGFEVIHHIKD----------------------KMDLFSNISRHLKDGGHLVLADFIANLLS------------ 111 (224)
T ss_pred CCCCEeehHHHHHhCCC----------------------HHHHHHHHHHHcCCCCEEEEEEcccccCc------------
Confidence 58999999999999543 56788888999999999998754321100
Q ss_pred HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960 174 DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS 223 (300)
Q Consensus 174 ~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~ 223 (300)
+ ...- ..+.|.++.+|+.+.+++.| |++.+.+.+...
T Consensus 112 -----~------~~~~-~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~~~~ 148 (224)
T smart00828 112 -----A------IEHE-ETTSYLVTREEWAELLARNN-LRVVEGVDASLE 148 (224)
T ss_pred -----c------cccc-ccccccCCHHHHHHHHHHCC-CeEEEeEECcHh
Confidence 0 0111 24567899999999999998 999887766443
No 21
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.41 E-value=3.4e-06 Score=77.35 Aligned_cols=160 Identities=22% Similarity=0.233 Sum_probs=94.7
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
.+|+|+||++|--++.+...+ + +-+|..-|.-.+ .|....++..+. + ..+ +.=
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~-----------g----~g~v~~~D~s~~-------ML~~a~~k~~~~-~--~~~--i~f 105 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSV-----------G----TGEVVGLDISES-------MLEVAREKLKKK-G--VQN--VEF 105 (238)
T ss_pred CEEEEecCCccHHHHHHHHhc-----------C----CceEEEEECCHH-------HHHHHHHHhhcc-C--ccc--eEE
Confidence 479999999998877554322 1 356666663221 111111111110 0 112 232
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~ 161 (300)
|=|..-+=-||++|+|++.+++.||++.+ -...|+--+|=|||||++++.=.+++...
T Consensus 106 v~~dAe~LPf~D~sFD~vt~~fglrnv~d----------------------~~~aL~E~~RVlKpgG~~~vle~~~p~~~ 163 (238)
T COG2226 106 VVGDAENLPFPDNSFDAVTISFGLRNVTD----------------------IDKALKEMYRVLKPGGRLLVLEFSKPDNP 163 (238)
T ss_pred EEechhhCCCCCCccCEEEeeehhhcCCC----------------------HHHHHHHHHHhhcCCeEEEEEEcCCCCch
Confidence 33455555599999999999999999665 34456667889999999988877776543
Q ss_pred CCCchHHHHHHHHHHHc------C-CCc--hhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960 162 ATPGEPMLMVLKDMISE------G-LAE--ESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE 216 (300)
Q Consensus 162 ~~~~~~l~~al~~mv~e------G-~i~--~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~ 216 (300)
.. ..+...+-.. | +++ .+++.-...-.--+|+.+++.+.++++| |+..+
T Consensus 164 ~~-----~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~ 221 (238)
T COG2226 164 VL-----RKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVR 221 (238)
T ss_pred hh-----HHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEe
Confidence 32 2222221111 1 121 2222221123445799999999999998 77555
No 22
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.38 E-value=4e-06 Score=74.73 Aligned_cols=171 Identities=18% Similarity=0.189 Sum_probs=93.5
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
.+|+|+||+.|..+..+.... ++..+++..|+..+=.. ..+ ...... +.. .++ ..
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~~~~-~a~------~~~~~~-~~~-~~~--~~ 107 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEGMLA-VGR------EKLRDL-GLS-GNV--EF 107 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHHHHH-HHH------Hhhccc-ccc-cCe--EE
Confidence 479999999998776543321 12467788886432111 111 000000 000 122 12
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~ 161 (300)
+-+++....++.+++|++++++++|++++ ...+|+...+-|+|||++++.-...+...
T Consensus 108 ~~~d~~~~~~~~~~~D~I~~~~~l~~~~~----------------------~~~~l~~~~~~L~~gG~li~~~~~~~~~~ 165 (239)
T PRK00216 108 VQGDAEALPFPDNSFDAVTIAFGLRNVPD----------------------IDKALREMYRVLKPGGRLVILEFSKPTNP 165 (239)
T ss_pred EecccccCCCCCCCccEEEEecccccCCC----------------------HHHHHHHHHHhccCCcEEEEEEecCCCch
Confidence 33455555577889999999999999655 34567778889999999887655443321
Q ss_pred CCCchHHHHHHHH-HHHc-C-CCch--hhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960 162 ATPGEPMLMVLKD-MISE-G-LAEE--SKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV 222 (300)
Q Consensus 162 ~~~~~~l~~al~~-mv~e-G-~i~~--e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~ 222 (300)
. . ..+.+.+.. +... + .+.. +..+.+...-..+++.+|+..++++.| |++.+...+.-
T Consensus 166 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~ 228 (239)
T PRK00216 166 P-L-KKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAG-FERVRYRNLTG 228 (239)
T ss_pred H-H-HHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCC-Cceeeeeeeec
Confidence 1 1 111111111 0000 0 0000 001110000123579999999999999 88877776543
No 23
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.31 E-value=8.9e-05 Score=72.49 Aligned_cols=140 Identities=12% Similarity=0.189 Sum_probs=87.4
Q ss_pred CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960 93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL 172 (300)
Q Consensus 93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al 172 (300)
++++|.++|...+||+.. +++..+++.-.+-|+|||++++...+.+.....
T Consensus 226 ~~~fD~Ivs~~~~ehvg~--------------------~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~--------- 276 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGP--------------------KNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTN--------- 276 (383)
T ss_pred CCCCCEEEEeCchhhCCh--------------------HHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCC---------
Confidence 578999999999999422 346678888899999999999988776542110
Q ss_pred HHHHHcCCCchhhhccccCCCc-ccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccchHHHHHHHHH
Q 045960 173 KDMISEGLAEESKVKSFEDFPI-YRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVR 251 (300)
Q Consensus 173 ~~mv~eG~i~~e~~d~f~~~P~-y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~~iR 251 (300)
...-++.+ .+|- +.|+++++.+..+ .| |++..++.+..+ +++++..|.+
T Consensus 277 ---------~~~~i~~y-ifp~g~lps~~~i~~~~~-~~-~~v~d~~~~~~h------------------y~~TL~~W~~ 326 (383)
T PRK11705 277 ---------VDPWINKY-IFPNGCLPSVRQIAQASE-GL-FVMEDWHNFGAD------------------YDRTLMAWHE 326 (383)
T ss_pred ---------CCCCceee-ecCCCcCCCHHHHHHHHH-CC-cEEEEEecChhh------------------HHHHHHHHHH
Confidence 01123455 6774 6899999999877 34 888877754222 2344444443
Q ss_pred Hhhhh--HHHhhhChhHHHHHHHHHHHHhhhhhhhcCCCCeEEE
Q 045960 252 AVGES--FLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASL 293 (300)
Q Consensus 252 A~~ep--~l~~hfge~i~delf~r~~~~~~~~~~~~~~~~~~~~ 293 (300)
.+-.. -+.+-+|+.. -.+++.|-.-.+.. ++.....-..+
T Consensus 327 ~f~~~~~~~~~~~~~~~-~r~w~~yl~~~~~~-F~~~~~~~~q~ 368 (383)
T PRK11705 327 NFEAAWPELADNYSERF-YRMWRYYLLSCAGA-FRARDIQLWQV 368 (383)
T ss_pred HHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHH-HhCCCceEEEE
Confidence 33221 1233456544 33566666666666 55554444444
No 24
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.29 E-value=7.4e-06 Score=78.86 Aligned_cols=147 Identities=15% Similarity=0.143 Sum_probs=88.6
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
.+|.|+||++|..++.+.+.. +..+|...|+-.+ .-...+... . ..++ ..
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~---------------~~~~VtgVD~S~~-mL~~A~~k~----------~--~~~i--~~ 164 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHV---------------DAKNVTILDQSPH-QLAKAKQKE----------P--LKEC--KI 164 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHC---------------CCCEEEEEECCHH-HHHHHHHhh----------h--ccCC--eE
Confidence 479999999998776443210 1246777775222 111111100 0 0111 11
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~ 161 (300)
+.++....-+|++++|+++++.++|++.+ ....|+.-.+-|+|||++++.-...++
T Consensus 165 i~gD~e~lp~~~~sFDvVIs~~~L~~~~d----------------------~~~~L~e~~rvLkPGG~LvIi~~~~p~-- 220 (340)
T PLN02490 165 IEGDAEDLPFPTDYADRYVSAGSIEYWPD----------------------PQRGIKEAYRVLKIGGKACLIGPVHPT-- 220 (340)
T ss_pred EeccHHhCCCCCCceeEEEEcChhhhCCC----------------------HHHHHHHHHHhcCCCcEEEEEEecCcc--
Confidence 44555554578899999999999998443 234677788999999999875322211
Q ss_pred CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecc
Q 045960 162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSW 224 (300)
Q Consensus 162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~ 224 (300)
..+..-+. +.+ ..+++.+|+.+++++.| |+..+++.+...|
T Consensus 221 ----~~~~r~~~-------------~~~----~~~~t~eEl~~lL~~aG-F~~V~i~~i~~~~ 261 (340)
T PLN02490 221 ----FWLSRFFA-------------DVW----MLFPKEEEYIEWFTKAG-FKDVKLKRIGPKW 261 (340)
T ss_pred ----hhHHHHhh-------------hhh----ccCCCHHHHHHHHHHCC-CeEEEEEEcChhh
Confidence 01111000 111 13579999999999998 9887777665544
No 25
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.26 E-value=9e-06 Score=77.72 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=64.7
Q ss_pred CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960 84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT 163 (300)
Q Consensus 84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~ 163 (300)
+++..--++++++|+|++..+|||+.+ ...||+.-++-|||||++++....+...
T Consensus 187 ~dae~l~~~~~~FD~Vi~~~vLeHv~d----------------------~~~~L~~l~r~LkPGG~liist~nr~~~--- 241 (322)
T PLN02396 187 TTAEKLADEGRKFDAVLSLEVIEHVAN----------------------PAEFCKSLSALTIPNGATVLSTINRTMR--- 241 (322)
T ss_pred cCHHHhhhccCCCCEEEEhhHHHhcCC----------------------HHHHHHHHHHHcCCCcEEEEEECCcCHH---
Confidence 444433356789999999999999655 3567778888899999999998654311
Q ss_pred CchHHHHHH--HHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960 164 PGEPMLMVL--KDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF 220 (300)
Q Consensus 164 ~~~~l~~al--~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~ 220 (300)
.....+ .+.+. +.+. ... .....+.+++|+.+++++.| |++..+.-+
T Consensus 242 ---~~~~~i~~~eyi~-~~lp----~gt-h~~~~f~tp~eL~~lL~~aG-f~i~~~~G~ 290 (322)
T PLN02396 242 ---AYASTIVGAEYIL-RWLP----KGT-HQWSSFVTPEELSMILQRAS-VDVKEMAGF 290 (322)
T ss_pred ---HHHHhhhhHHHHH-hcCC----CCC-cCccCCCCHHHHHHHHHHcC-CeEEEEeee
Confidence 010110 00000 0111 011 11224689999999999998 888877544
No 26
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.22 E-value=3e-06 Score=64.18 Aligned_cols=50 Identities=34% Similarity=0.424 Sum_probs=40.7
Q ss_pred ecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960 81 ASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL 152 (300)
Q Consensus 81 ~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl 152 (300)
-+-+++..--||++|+|+++++.++||+ + |...+|+.-++=|||||++++
T Consensus 46 ~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~-------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 46 FRQGDAEDLPFPDNSFDVVFSNSVLHHL---E-------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEESBTTSSSS-TT-EEEEEEESHGGGS---S-------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred heeehHHhCccccccccccccccceeec---c-------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 3556677778999999999999999997 2 467888899999999999985
No 27
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.21 E-value=2.8e-05 Score=68.88 Aligned_cols=77 Identities=14% Similarity=0.276 Sum_probs=52.7
Q ss_pred CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960 93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL 172 (300)
Q Consensus 93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al 172 (300)
++++|+|+|+.++||+.. .|...+++.-++-|+|||++++...-..+..+.
T Consensus 93 ~~~fD~I~~~~~~~~~~~--------------------~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~--------- 143 (197)
T PRK11207 93 DGEYDFILSTVVLMFLEA--------------------KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC--------- 143 (197)
T ss_pred CCCcCEEEEecchhhCCH--------------------HHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC---------
Confidence 467999999999999643 246778888899999999965543222111110
Q ss_pred HHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960 173 KDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE 218 (300)
Q Consensus 173 ~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e 218 (300)
.- ..| +..+.+|+.+.++ | |++.+.+
T Consensus 144 ---------------~~-~~~-~~~~~~el~~~~~--~-~~~~~~~ 169 (197)
T PRK11207 144 ---------------TV-GFP-FAFKEGELRRYYE--G-WEMVKYN 169 (197)
T ss_pred ---------------CC-CCC-CccCHHHHHHHhC--C-CeEEEee
Confidence 01 233 5578999999987 5 8876664
No 28
>PRK06202 hypothetical protein; Provisional
Probab=98.21 E-value=3.1e-05 Score=69.88 Aligned_cols=165 Identities=14% Similarity=0.131 Sum_probs=86.4
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
-+|+|+||++|..+..+... .++ ..+..+|...|+-. +.-...+... .. .+--+..+
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~----~~~-------~g~~~~v~gvD~s~-~~l~~a~~~~----------~~-~~~~~~~~ 118 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARW----ARR-------DGLRLEVTAIDPDP-RAVAFARANP----------RR-PGVTFRQA 118 (232)
T ss_pred cEEEEeccCCCHHHHHHHHH----HHh-------CCCCcEEEEEcCCH-HHHHHHHhcc----------cc-CCCeEEEE
Confidence 37999999999977743322 222 12346788888532 1111111110 00 01112222
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~ 161 (300)
....+ -++++++|+++|+.+|||+.. .++..+|+.-++-++ |.+++.-+.++...
T Consensus 119 ~~~~l---~~~~~~fD~V~~~~~lhh~~d--------------------~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~ 173 (232)
T PRK06202 119 VSDEL---VAEGERFDVVTSNHFLHHLDD--------------------AEVVRLLADSAALAR--RLVLHNDLIRSRLA 173 (232)
T ss_pred ecccc---cccCCCccEEEECCeeecCCh--------------------HHHHHHHHHHHHhcC--eeEEEeccccCHHH
Confidence 22221 127789999999999999654 123455555544444 55555555554211
Q ss_pred CCCchHHHHHHHHHHHcCC-CchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecc
Q 045960 162 ATPGEPMLMVLKDMISEGL-AEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSW 224 (300)
Q Consensus 162 ~~~~~~l~~al~~mv~eG~-i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~ 224 (300)
-.+..........|. +.. |.. .--.-++|.+|+.+.+++ | |++.+.-.+...|
T Consensus 174 ----~~~~~~~~~~~~~~~~~~~---d~~-~s~~~~~~~~el~~ll~~-G-f~~~~~~~~~~~~ 227 (232)
T PRK06202 174 ----YALFWAGTRLLSRSSFVHT---DGL-LSVRRSYTPAELAALAPQ-G-WRVERQWPFRYLL 227 (232)
T ss_pred ----HHHHHHHHHHhccCceeec---cch-HHHHhhcCHHHHHHHhhC-C-CeEEeccceeeEE
Confidence 111111111112122 222 222 222457899999999998 7 9998877665443
No 29
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.21 E-value=6.4e-06 Score=65.05 Aligned_cols=93 Identities=23% Similarity=0.293 Sum_probs=61.3
Q ss_pred EEEeeCCCCCcccHHHHH--------------HHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhh
Q 045960 3 RFADLGCSSGPNALLPTW--------------EAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRT 68 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~--------------~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~ 68 (300)
+|.|+||++|..++.+.+ ..++..++.....+ ..+.++++..|. .
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~-~------------------- 62 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA-E------------------- 62 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC-H-------------------
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc-c-------------------
Confidence 799999999999998887 45555555432222 123355555443 0
Q ss_pred hcCCCCCceeeeecCCccccccCCCCcccEEEecc-ccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccC
Q 045960 69 EKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSY-ALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQ 147 (300)
Q Consensus 69 ~~~~~~~~~f~~~vpgSFy~~l~P~~sv~~~~Ss~-alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~G 147 (300)
+..-+ ...+|+++++. ++|++-. ..+...+|+.-.+-|+||
T Consensus 63 ------------------~~~~~-~~~~D~v~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 63 ------------------FDPDF-LEPFDLVICSGFTLHFLLP-------------------LDERRRVLERIRRLLKPG 104 (112)
T ss_dssp ------------------GGTTT-SSCEEEEEECSGSGGGCCH-------------------HHHHHHHHHHHHHHEEEE
T ss_pred ------------------cCccc-CCCCCEEEECCCccccccc-------------------hhHHHHHHHHHHHhcCCC
Confidence 11111 11289999999 8887433 145788899999999999
Q ss_pred ceeEEEE
Q 045960 148 GRMVLTL 154 (300)
Q Consensus 148 G~~vl~~ 154 (300)
|++++.-
T Consensus 105 G~lvi~~ 111 (112)
T PF12847_consen 105 GRLVINT 111 (112)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 9999863
No 30
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.20 E-value=2.3e-05 Score=69.06 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=92.2
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
.+|.|+||+.|..+..+.... + +..+++.-|.-. +.-... . .... . ..++-+
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~-------------~-~~~~~~~iD~~~-~~~~~~---~---~~~~---~--~~~i~~-- 92 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSA-------------P-DRGKVTGVDFSS-EMLEVA---K---KKSE---L--PLNIEF-- 92 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhc-------------C-CCceEEEEECCH-HHHHHH---H---HHhc---c--CCCceE--
Confidence 479999999998777553221 1 125677777521 111111 0 0000 0 012221
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~ 161 (300)
+.+++..-.++++++|+++++..+|++.. ...+|+...+-|+|||++++.-.-.+...
T Consensus 93 ~~~d~~~~~~~~~~~D~i~~~~~~~~~~~----------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 150 (223)
T TIGR01934 93 IQADAEALPFEDNSFDAVTIAFGLRNVTD----------------------IQKALREMYRVLKPGGRLVILEFSKPANA 150 (223)
T ss_pred EecchhcCCCCCCcEEEEEEeeeeCCccc----------------------HHHHHHHHHHHcCCCcEEEEEEecCCCch
Confidence 23555555578889999999999999554 45678888999999999987654333221
Q ss_pred CCCchHHHHHHHH-HHH--cCCCchhhhccccCC----CcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960 162 ATPGEPMLMVLKD-MIS--EGLAEESKVKSFEDF----PIYRASVDEVKQIVKKEGSFDIQEVETFN 221 (300)
Q Consensus 162 ~~~~~~l~~al~~-mv~--eG~i~~e~~d~f~~~----P~y~~s~eE~~~~i~~~gsF~I~~~e~~~ 221 (300)
+. ..+.+.+.. |.. .+..+.. .+.+ .. ...+++.+|++.++++.| |++.+.+.+.
T Consensus 151 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~ 212 (223)
T TIGR01934 151 LL--KKFYKFYLKNVLPSIGGLISKN-AEAY-TYLPESIRAFPSQEELAAMLKEAG-FEEVRYRSLT 212 (223)
T ss_pred hh--HHHHHHHHHHhhhhhhhhhcCC-chhh-HHHHHHHHhCCCHHHHHHHHHHcC-Cccceeeeee
Confidence 11 122222221 110 1111111 1111 10 123579999999999999 8888777664
No 31
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.20 E-value=0.00029 Score=65.85 Aligned_cols=91 Identities=21% Similarity=0.372 Sum_probs=57.7
Q ss_pred cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHH
Q 045960 95 FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKD 174 (300)
Q Consensus 95 sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~ 174 (300)
++|-++|--++.-+ + .+++..|++.-++=|+|||++++...+..+... .
T Consensus 127 ~fD~IvSi~~~Ehv---g-----------------~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~-------~---- 175 (273)
T PF02353_consen 127 KFDRIVSIEMFEHV---G-----------------RKNYPAFFRKISRLLKPGGRLVLQTITHRDPPY-------H---- 175 (273)
T ss_dssp S-SEEEEESEGGGT---C-----------------GGGHHHHHHHHHHHSETTEEEEEEEEEE--HHH-------H----
T ss_pred CCCEEEEEechhhc---C-----------------hhHHHHHHHHHHHhcCCCcEEEEEecccccccc-------h----
Confidence 78888888887764 2 235788999999999999999999887764210 0
Q ss_pred HHHcCCCchhhhccccCCCc-ccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960 175 MISEGLAEESKVKSFEDFPI-YRASVDEVKQIVKKEGSFDIQEVETF 220 (300)
Q Consensus 175 mv~eG~i~~e~~d~f~~~P~-y~~s~eE~~~~i~~~gsF~I~~~e~~ 220 (300)
.+...+-+-+... .+|- +.|+.+|+...+++.| |+|.+.+.+
T Consensus 176 --~~~~~~~~~i~ky-iFPgg~lps~~~~~~~~~~~~-l~v~~~~~~ 218 (273)
T PF02353_consen 176 --AERRSSSDFIRKY-IFPGGYLPSLSEILRAAEDAG-LEVEDVENL 218 (273)
T ss_dssp --HCTTCCCHHHHHH-TSTTS---BHHHHHHHHHHTT--EEEEEEE-
T ss_pred --hhcCCCceEEEEe-eCCCCCCCCHHHHHHHHhcCC-EEEEEEEEc
Confidence 1111111112333 4565 6689999999898887 888877655
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.16 E-value=5e-05 Score=67.14 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=52.9
Q ss_pred CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960 93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL 172 (300)
Q Consensus 93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al 172 (300)
++++|+++|+.++||++. .++..+++.-++-|+|||++++...-..+..+
T Consensus 92 ~~~fD~I~~~~~~~~~~~--------------------~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~---------- 141 (195)
T TIGR00477 92 NEDYDFIFSTVVFMFLQA--------------------GRVPEIIANMQAHTRPGGYNLIVAAMDTADYP---------- 141 (195)
T ss_pred cCCCCEEEEecccccCCH--------------------HHHHHHHHHHHHHhCCCcEEEEEEecccCCCC----------
Confidence 457999999999999643 34677888889999999996554321211100
Q ss_pred HHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960 173 KDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE 218 (300)
Q Consensus 173 ~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e 218 (300)
... .|-|..+++|+++.++ + |++.+.+
T Consensus 142 --------------~~~--~~~~~~~~~el~~~f~--~-~~~~~~~ 168 (195)
T TIGR00477 142 --------------CHM--PFSFTFKEDELRQYYA--D-WELLKYN 168 (195)
T ss_pred --------------CCC--CcCccCCHHHHHHHhC--C-CeEEEee
Confidence 011 2236789999999986 3 8887765
No 33
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.16 E-value=3.8e-05 Score=71.89 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=54.9
Q ss_pred CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960 93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL 172 (300)
Q Consensus 93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al 172 (300)
++++|+++|+.+||++.. .++..+|+.-.+-|+|||++++......+..
T Consensus 182 ~~~fD~I~~~~vl~~l~~--------------------~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~----------- 230 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNR--------------------ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY----------- 230 (287)
T ss_pred cCCccEEEEcchhhhCCH--------------------HHHHHHHHHHHHhcCCCcEEEEEEecccccC-----------
Confidence 678999999999999643 3577888888999999999776543222110
Q ss_pred HHHHHcCCCchhhhccccCCC-cccCCHHHHHHHHHhcCCeeEEEEE
Q 045960 173 KDMISEGLAEESKVKSFEDFP-IYRASVDEVKQIVKKEGSFDIQEVE 218 (300)
Q Consensus 173 ~~mv~eG~i~~e~~d~f~~~P-~y~~s~eE~~~~i~~~gsF~I~~~e 218 (300)
.. ..| -+..+.+|+++.+.. |+|.+.+
T Consensus 231 ---------------~~-~~p~~~~~~~~el~~~~~~---~~i~~~~ 258 (287)
T PRK12335 231 ---------------PC-PMPFSFTFKEGELKDYYQD---WEIVKYN 258 (287)
T ss_pred ---------------CC-CCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence 01 233 356789999999963 8888774
No 34
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.14 E-value=7.1e-06 Score=74.93 Aligned_cols=162 Identities=21% Similarity=0.230 Sum_probs=62.5
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
-+|.|+||++|-.|+.+.. + -.|..+|+.-|.- .=- |....++.... + ..++. -
T Consensus 49 ~~vLDv~~GtG~~~~~l~~-----------~---~~~~~~v~~vD~s-----~~M--L~~a~~k~~~~-~--~~~i~--~ 102 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELAR-----------R---VGPNGKVVGVDIS-----PGM--LEVARKKLKRE-G--LQNIE--F 102 (233)
T ss_dssp -EEEEET-TTSHHHHHHGG-----------G---SS---EEEEEES------HHH--HHHHHHHHHHT-T----SEE--E
T ss_pred CEEEEeCCChHHHHHHHHH-----------H---CCCccEEEEecCC-----HHH--HHHHHHHHHhh-C--CCCee--E
Confidence 3799999999987774421 1 1234566666632 111 11111122111 1 12332 2
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~ 161 (300)
+-|+.-.==||++|+|.+.+++.||-+.+ ....|+.-.+=|||||++++.=.+++...
T Consensus 103 v~~da~~lp~~d~sfD~v~~~fglrn~~d----------------------~~~~l~E~~RVLkPGG~l~ile~~~p~~~ 160 (233)
T PF01209_consen 103 VQGDAEDLPFPDNSFDAVTCSFGLRNFPD----------------------RERALREMYRVLKPGGRLVILEFSKPRNP 160 (233)
T ss_dssp EE-BTTB--S-TT-EEEEEEES-GGG-SS----------------------HHHHHHHHHHHEEEEEEEEEEEEEB-SSH
T ss_pred EEcCHHHhcCCCCceeEEEHHhhHHhhCC----------------------HHHHHHHHHHHcCCCeEEEEeeccCCCCc
Confidence 33444444489999999999999999544 45667778899999999998888887642
Q ss_pred CCCchHHHHHHHHHHH------cCCCchhhhccccCCC---cccCCHHHHHHHHHhcCCeeEEEEE
Q 045960 162 ATPGEPMLMVLKDMIS------EGLAEESKVKSFEDFP---IYRASVDEVKQIVKKEGSFDIQEVE 218 (300)
Q Consensus 162 ~~~~~~l~~al~~mv~------eG~i~~e~~d~f~~~P---~y~~s~eE~~~~i~~~gsF~I~~~e 218 (300)
.+...+.--.. -++++.+ .+.+..+| .-+|+++|+.+.++++| |+..+.+
T Consensus 161 -----~~~~~~~~y~~~ilP~~g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~~~ 219 (233)
T PF01209_consen 161 -----LLRALYKFYFKYILPLIGRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG-FKNVEYR 219 (233)
T ss_dssp -----HHHHHHHH-----------------------------------------------------
T ss_pred -----hhhceeeeeecccccccccccccc-cccccccccccccccccccccccccccc-ccccccc
Confidence 12222111000 1223322 22221222 34789999999999999 7754443
No 35
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.14 E-value=3.3e-05 Score=65.03 Aligned_cols=145 Identities=18% Similarity=0.272 Sum_probs=80.6
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCc-eeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGS-CFVA 80 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~-~f~~ 80 (300)
.+|+|+||++|..++.+.. +. .|..+++.-|+-.. . +... ....+..+ ..+ -|..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~-------~~-------~~~~~i~gvD~s~~-----~--i~~a-~~~~~~~~--~~ni~~~~ 60 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAK-------EL-------NPGAKIIGVDISEE-----M--IEYA-KKRAKELG--LDNIEFIQ 60 (152)
T ss_dssp SEEEEET-TTSHHHHHHHH-------HS-------TTTSEEEEEESSHH-----H--HHHH-HHHHHHTT--STTEEEEE
T ss_pred CEEEEecCcCcHHHHHHHH-------hc-------CCCCEEEEEECcHH-----H--HHHh-hccccccc--ccccceEE
Confidence 5899999999999886654 11 12356777764210 0 0000 00001111 122 2222
Q ss_pred ecCCcccc--ccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960 81 ASPGSFYT--RLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND 158 (300)
Q Consensus 81 ~vpgSFy~--~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~ 158 (300)
++..+ +.++ +.+|+++++.++||+.. ...+|+.-.+-|++||++++......
T Consensus 61 ---~d~~~l~~~~~-~~~D~I~~~~~l~~~~~----------------------~~~~l~~~~~~lk~~G~~i~~~~~~~ 114 (152)
T PF13847_consen 61 ---GDIEDLPQELE-EKFDIIISNGVLHHFPD----------------------PEKVLKNIIRLLKPGGILIISDPNHN 114 (152)
T ss_dssp ---SBTTCGCGCSS-TTEEEEEEESTGGGTSH----------------------HHHHHHHHHHHEEEEEEEEEEEEEHS
T ss_pred ---eehhccccccC-CCeeEEEEcCchhhccC----------------------HHHHHHHHHHHcCCCcEEEEEECChH
Confidence 34433 1144 89999999999999554 56777888899999999998887622
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcC
Q 045960 159 NFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEG 210 (300)
Q Consensus 159 ~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~g 210 (300)
+.+...+.++.. +.-+.+... . ... ..+|+..+++++|
T Consensus 115 -------~~~~~~~~~~~~---~~~~~~~~~--~-~~~-~~~~~~~~~~~ag 152 (152)
T PF13847_consen 115 -------DELPEQLEELMN---LYSEVWSMI--Y-IGN-DKEEWKYILEEAG 152 (152)
T ss_dssp -------HHHHHHHHHHHH---HHHHHHHHC--C-----CCCGHHHHHHHTT
T ss_pred -------HHHHHHHHHHHH---HHHHHhhhh--h-ccc-CHHHHHHHHHhcC
Confidence 122233333322 111111212 1 112 7888888888876
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.95 E-value=0.00023 Score=65.66 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=59.3
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA 162 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~ 162 (300)
.+.+..--+|++++|+++|+.++||. |. ....|+.-.+-|+|||++++.-......
T Consensus 134 ~~d~~~l~~~~~~fD~Vi~~~v~~~~---~d-------------------~~~~l~~~~r~LkpGG~l~i~~~~~~~~-- 189 (272)
T PRK11873 134 LGEIEALPVADNSVDVIISNCVINLS---PD-------------------KERVFKEAFRVLKPGGRFAISDVVLRGE-- 189 (272)
T ss_pred EcchhhCCCCCCceeEEEEcCcccCC---CC-------------------HHHHHHHHHHHcCCCcEEEEEEeeccCC--
Confidence 34544433678899999999999994 32 2345566778899999999864332221
Q ss_pred CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960 163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219 (300)
Q Consensus 163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~ 219 (300)
.. +.+...+. +. .. ......+.+|+..++++.| |...++..
T Consensus 190 ~~-~~~~~~~~-~~----------~~---~~~~~~~~~e~~~~l~~aG-f~~v~i~~ 230 (272)
T PRK11873 190 LP-EEIRNDAE-LY----------AG---CVAGALQEEEYLAMLAEAG-FVDITIQP 230 (272)
T ss_pred CC-HHHHHhHH-HH----------hc---cccCCCCHHHHHHHHHHCC-CCceEEEe
Confidence 11 22222111 10 01 1113457899999999998 77665543
No 37
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.90 E-value=1.6e-05 Score=61.79 Aligned_cols=99 Identities=20% Similarity=0.148 Sum_probs=48.3
Q ss_pred EeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeecCC
Q 045960 5 ADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAASPG 84 (300)
Q Consensus 5 aD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~vpg 84 (300)
.|+||++|..+..++... |..++...|.-.+=-...=+.+. ..... ..-.......
T Consensus 1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~~~l~~a~~~~~-------~~~~~--~~~~~~~~~~ 56 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISPSMLERARERLA-------ELGND--NFERLRFDVL 56 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------------EEEEEEEESSSSTTSTTCCCHH-------HCT-----EEEEE--SS
T ss_pred CEeCccChHHHHHHHHhC---------------CCCEEEEEECCHHHHHHHHHHhh-------hcCCc--ceeEEEeecC
Confidence 499999999998766543 35777777754332211111111 10000 1112222222
Q ss_pred ccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCcee
Q 045960 85 SFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRM 150 (300)
Q Consensus 85 SFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~ 150 (300)
....... .+++|+|+++.+|||+. |+..+|+.-++-|+|||++
T Consensus 57 ~~~~~~~-~~~fD~V~~~~vl~~l~----------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 57 DLFDYDP-PESFDLVVASNVLHHLE----------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---CCC-----SEEEEE-TTS--S-----------------------HHHHHHHHTTT-TSS-EE
T ss_pred Chhhccc-ccccceehhhhhHhhhh----------------------hHHHHHHHHHHHcCCCCCC
Confidence 2222222 28999999999999972 3678888899999999986
No 38
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.87 E-value=0.00027 Score=66.49 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=86.6
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+||++|..++.+.+. -|..++..-|+|. ....... .... .+.. .+ +..+
T Consensus 152 ~vlDiG~G~G~~~~~~~~~---------------~p~~~~~~~D~~~-----~~~~a~~---~~~~-~gl~-~r--v~~~ 204 (306)
T TIGR02716 152 KMIDVGGGIGDISAAMLKH---------------FPELDSTILNLPG-----AIDLVNE---NAAE-KGVA-DR--MRGI 204 (306)
T ss_pred EEEEeCCchhHHHHHHHHH---------------CCCCEEEEEecHH-----HHHHHHH---HHHh-CCcc-ce--EEEE
Confidence 7999999999766544322 2457777778752 1111111 1111 1110 12 3457
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC-C
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF-H 161 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~-~ 161 (300)
+|+|+..-+|. .|+++.+..+|-... .+-..+|+.-++-|+|||++++.=.-.++. .
T Consensus 205 ~~d~~~~~~~~--~D~v~~~~~lh~~~~--------------------~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~ 262 (306)
T TIGR02716 205 AVDIYKESYPE--ADAVLFCRILYSANE--------------------QLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN 262 (306)
T ss_pred ecCccCCCCCC--CCEEEeEhhhhcCCh--------------------HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC
Confidence 88999766675 499998889884222 123567888889999999998873222221 1
Q ss_pred CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960 162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE 216 (300)
Q Consensus 162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~ 216 (300)
+.. ..+... |..-|+. + .+..+++.+|+++++++.| |+..+
T Consensus 263 ~~~-~~~~~~---~~~~~~~-------~--~~~~~~~~~e~~~ll~~aG-f~~v~ 303 (306)
T TIGR02716 263 PNF-DYLSHY---ILGAGMP-------F--SVLGFKEQARYKEILESLG-YKDVT 303 (306)
T ss_pred chh-hHHHHH---HHHcccc-------c--ccccCCCHHHHHHHHHHcC-CCeeE
Confidence 111 122222 2112211 1 1123556899999999999 77443
No 39
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.79 E-value=0.00052 Score=60.98 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=57.1
Q ss_pred CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960 93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL 172 (300)
Q Consensus 93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al 172 (300)
++++|+++++.++|+... ...+|+.-.+-|+|||.+++....+.. . ......+
T Consensus 110 ~~~~D~i~~~~~l~~~~~----------------------~~~~l~~~~~~L~~gG~l~i~~~~~~~---~--~~~~~~~ 162 (224)
T TIGR01983 110 AKSFDVVTCMEVLEHVPD----------------------PQAFIRACAQLLKPGGILFFSTINRTP---K--SYLLAIV 162 (224)
T ss_pred CCCccEEEehhHHHhCCC----------------------HHHHHHHHHHhcCCCcEEEEEecCCCc---h--HHHHHHH
Confidence 478999999999999544 456777788889999998876543211 0 1111111
Q ss_pred H-HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960 173 K-DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF 220 (300)
Q Consensus 173 ~-~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~ 220 (300)
. ++. .+.+. +.- .....+.+.+++.+++++.| |+|.+++.+
T Consensus 163 ~~~~~-~~~~~----~~~-~~~~~~~~~~~l~~~l~~~G-~~i~~~~~~ 204 (224)
T TIGR01983 163 GAEYI-LRIVP----KGT-HDWEKFIKPSELTSWLESAG-LRVKDVKGL 204 (224)
T ss_pred hhhhh-hhcCC----CCc-CChhhcCCHHHHHHHHHHcC-CeeeeeeeE
Confidence 1 010 11111 111 11123458999999999998 998877644
No 40
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.77 E-value=0.00021 Score=62.71 Aligned_cols=95 Identities=14% Similarity=0.230 Sum_probs=57.4
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM 170 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~ 170 (300)
+|++++|+++|+.+|||+.. +. .+|+.- ++++|..++.++..... .
T Consensus 71 ~~~~sfD~Vi~~~~l~~~~d-------~~---------------~~l~e~---~r~~~~~ii~~p~~~~~---------~ 116 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQATRN-------PE---------------EILDEM---LRVGRHAIVSFPNFGYW---------R 116 (194)
T ss_pred cCCCCcCEEEEhhHhHcCcC-------HH---------------HHHHHH---HHhCCeEEEEcCChhHH---------H
Confidence 67899999999999999654 22 222211 33577777777533211 1
Q ss_pred HHHHHHHcCCCchhh-h--ccccC-CCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960 171 VLKDMISEGLAEESK-V--KSFED-FPIYRASVDEVKQIVKKEGSFDIQEVETFN 221 (300)
Q Consensus 171 al~~mv~eG~i~~e~-~--d~f~~-~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~ 221 (300)
....+...|.....+ . .-+ + .+..+++.+|+.+++++.| |++...+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 117 VRWSILTKGRMPVTGELPYDWY-NTPNIHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred HHHHHHhCCccccCCCCCcccc-CCCCcccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 111122223222111 1 112 2 2356889999999999999 9999888774
No 41
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.75 E-value=0.00013 Score=62.46 Aligned_cols=100 Identities=17% Similarity=0.100 Sum_probs=61.8
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM 170 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~ 170 (300)
+|++++|++++++++||+.+ ...+|+.-.+-|||||++++.-.+.++.... ..+ .
T Consensus 40 ~~~~~fD~v~~~~~l~~~~d----------------------~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~--~~~-~ 94 (160)
T PLN02232 40 FDDCEFDAVTMGYGLRNVVD----------------------RLRAMKEMYRVLKPGSRVSILDFNKSNQSVT--TFM-Q 94 (160)
T ss_pred CCCCCeeEEEecchhhcCCC----------------------HHHHHHHHHHHcCcCeEEEEEECCCCChHHH--HHH-H
Confidence 67889999999999999643 5677888899999999999886665442110 000 0
Q ss_pred HHH---HHHHcCCCchhhhccccCCC---cccCCHHHHHHHHHhcCCeeEEEE
Q 045960 171 VLK---DMISEGLAEESKVKSFEDFP---IYRASVDEVKQIVKKEGSFDIQEV 217 (300)
Q Consensus 171 al~---~mv~eG~i~~e~~d~f~~~P---~y~~s~eE~~~~i~~~gsF~I~~~ 217 (300)
.|. -+..-|.+... .+.+..+| ..+++++|+.+++++.| |+..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~~ 145 (160)
T PLN02232 95 GWMIDNVVVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSACH 145 (160)
T ss_pred HHHccchHhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcceE
Confidence 000 01111111111 12221122 24689999999999999 774443
No 42
>PRK06922 hypothetical protein; Provisional
Probab=97.74 E-value=9.9e-05 Score=76.26 Aligned_cols=54 Identities=26% Similarity=0.244 Sum_probs=40.9
Q ss_pred cCCCCcccEEEeccccccc-cCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960 90 LFPHNFLDFVYSSYALHWL-SRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT 153 (300)
Q Consensus 90 l~P~~sv~~~~Ss~alHWL-S~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~ 153 (300)
.||++++|++++++++||+ +.+|..-. +| -.+|...+|+.-.+-|||||++++.
T Consensus 482 ~fedeSFDvVVsn~vLH~L~syIp~~g~-------~f---~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 482 SFEKESVDTIVYSSILHELFSYIEYEGK-------KF---NHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred ccCCCCEEEEEEchHHHhhhhhcccccc-------cc---cHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4789999999999999975 45552100 00 1357888999999999999999885
No 43
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.70 E-value=0.00026 Score=70.58 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=53.9
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM 170 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~ 170 (300)
+|++++|+|+|+.++||++. .++..+|+.-++-|+|||+|++.=..-.
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~--------------------~~~~~~l~~~~r~Lk~gG~l~~~d~~~~------------ 146 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSD--------------------KEVENLAERMVKWLKVGGYIFFRESCFH------------ 146 (475)
T ss_pred CCCCCEEEEehhhhHHhCCH--------------------HHHHHHHHHHHHhcCCCeEEEEEeccCC------------
Confidence 68899999999999999754 2467888888999999999977421100
Q ss_pred HHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcC
Q 045960 171 VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEG 210 (300)
Q Consensus 171 al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~g 210 (300)
..| .+..- .-|..+++..++..++.++|
T Consensus 147 ------~~~-----~~~~~-~~~~~~~~~~~~~~~f~~~~ 174 (475)
T PLN02336 147 ------QSG-----DSKRK-NNPTHYREPRFYTKVFKECH 174 (475)
T ss_pred ------CCC-----ccccc-CCCCeecChHHHHHHHHHhe
Confidence 001 01112 34556688999999998876
No 44
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.69 E-value=0.00057 Score=59.96 Aligned_cols=130 Identities=16% Similarity=0.176 Sum_probs=72.8
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
-+|.|+||++|..++.+... .|..+|+.-|.-.+=-. ..+ ... ...+ ..++ .-
T Consensus 44 ~~vLDiGcGtG~~s~~la~~---------------~~~~~V~~iD~s~~~~~-~a~------~~~-~~~~--~~~i--~~ 96 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIA---------------RPELKLTLLESNHKKVA-FLR------EVK-AELG--LNNV--EI 96 (181)
T ss_pred CeEEEecCCCCccHHHHHHH---------------CCCCeEEEEeCcHHHHH-HHH------HHH-HHhC--CCCe--EE
Confidence 37999999999888865310 12345666664332100 110 001 1111 1232 22
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~ 161 (300)
+-|+..+ +.+.+++|+++|.. +|+ +..+++.-.+=|+|||++++... ....
T Consensus 97 i~~d~~~-~~~~~~fD~I~s~~-~~~-------------------------~~~~~~~~~~~LkpgG~lvi~~~-~~~~- 147 (181)
T TIGR00138 97 VNGRAED-FQHEEQFDVITSRA-LAS-------------------------LNVLLELTLNLLKVGGYFLAYKG-KKYL- 147 (181)
T ss_pred Eecchhh-ccccCCccEEEehh-hhC-------------------------HHHHHHHHHHhcCCCCEEEEEcC-CCcH-
Confidence 3344433 44578999999976 544 12233444566999999998752 1111
Q ss_pred CCCchHHHHHHHHHHHcCCCchhhhccccCCC
Q 045960 162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFP 193 (300)
Q Consensus 162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P 193 (300)
.-+..+.+.|..+|+ ..-+.+++ ..|
T Consensus 148 ----~~~~~~~e~~~~~~~-~~~~~~~~-~~~ 173 (181)
T TIGR00138 148 ----DEIEEAKRKCQVLGV-EPLEVPPL-TGP 173 (181)
T ss_pred ----HHHHHHHHhhhhcCc-eEeecccc-CCC
Confidence 445566677777884 55567788 787
No 45
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.67 E-value=0.0013 Score=58.56 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=25.2
Q ss_pred CCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960 191 DFPIYRASVDEVKQIVKKEGSFDIQEVETFNV 222 (300)
Q Consensus 191 ~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~ 222 (300)
..+.+..+.+|+.+.++..| |++.+.+.+..
T Consensus 187 ~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~ 217 (230)
T PRK07580 187 TTRIYPHREKGIRRALAAAG-FKVVRTERISS 217 (230)
T ss_pred CCCccccCHHHHHHHHHHCC-CceEeeeeccc
Confidence 34567789999999999999 99888876643
No 46
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.66 E-value=0.0002 Score=66.41 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=34.5
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL 152 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl 152 (300)
+|.+++|+|+|.++|||++. .+...+|+.-++-|+|||.|++
T Consensus 199 ~~~~~fD~I~crnvl~yf~~--------------------~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 199 PPLGDFDLIFCRNVLIYFDE--------------------PTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred CccCCCCEEEechhHHhCCH--------------------HHHHHHHHHHHHHhCCCeEEEE
Confidence 46889999999999999653 2345677788899999999876
No 47
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.63 E-value=0.00036 Score=62.03 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=51.8
Q ss_pred cccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchH
Q 045960 88 TRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEP 167 (300)
Q Consensus 88 ~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~ 167 (300)
.+.+|++++|.++++++.+|...... . -..+...||+.-++-|+|||++++..... +.
T Consensus 104 ~~~~~~~~~D~V~~~~~~p~~~~~~~-~-------------~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------~~ 161 (202)
T PRK00121 104 LDMFPDGSLDRIYLNFPDPWPKKRHH-K-------------RRLVQPEFLALYARKLKPGGEIHFATDWE--------GY 161 (202)
T ss_pred HHHcCccccceEEEECCCCCCCcccc-c-------------cccCCHHHHHHHHHHcCCCCEEEEEcCCH--------HH
Confidence 45588899999999999888653110 0 01124678888899999999999876322 45
Q ss_pred HHHHHHHHHHcCCCch
Q 045960 168 MLMVLKDMISEGLAEE 183 (300)
Q Consensus 168 l~~al~~mv~eG~i~~ 183 (300)
+...+..|...|+-.+
T Consensus 162 ~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 162 AEYMLEVLSAEGGFLV 177 (202)
T ss_pred HHHHHHHHHhCccccc
Confidence 6677888878886444
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.60 E-value=0.0012 Score=58.90 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=25.6
Q ss_pred CCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960 191 DFPIYRASVDEVKQIVKKEGSFDIQEVETFN 221 (300)
Q Consensus 191 ~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~ 221 (300)
..++++++++|+.+++++.| |++.+.+...
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred ccceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 35678899999999999999 9998887654
No 49
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.57 E-value=0.00052 Score=61.06 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=47.0
Q ss_pred CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960 94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK 173 (300)
Q Consensus 94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~ 173 (300)
...|+++|..++|.|.. ..+..+++...+.++|||.+++...-..+.-+
T Consensus 93 ~~yD~I~st~v~~fL~~--------------------~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p----------- 141 (192)
T PF03848_consen 93 EEYDFIVSTVVFMFLQR--------------------ELRPQIIENMKAATKPGGYNLIVTFMETPDYP----------- 141 (192)
T ss_dssp TTEEEEEEESSGGGS-G--------------------GGHHHHHHHHHHTEEEEEEEEEEEEB--SSS------------
T ss_pred CCcCEEEEEEEeccCCH--------------------HHHHHHHHHHHhhcCCcEEEEEEEecccCCCC-----------
Confidence 56799999999999765 12456677788999999998875432221111
Q ss_pred HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEE
Q 045960 174 DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV 217 (300)
Q Consensus 174 ~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~ 217 (300)
... ++| +...+.|++.... | |+|.+.
T Consensus 142 -------------~~~-~~~-f~~~~~EL~~~y~--d-W~il~y 167 (192)
T PF03848_consen 142 -------------CPS-PFP-FLLKPGELREYYA--D-WEILKY 167 (192)
T ss_dssp --------------SS---S---B-TTHHHHHTT--T-SEEEEE
T ss_pred -------------CCC-CCC-cccCHHHHHHHhC--C-CeEEEE
Confidence 011 333 3458889999886 3 888775
No 50
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.55 E-value=0.00076 Score=60.57 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=58.3
Q ss_pred CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHH
Q 045960 92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMV 171 (300)
Q Consensus 92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~a 171 (300)
+.+.+|+++++..+++... ...+|+...+-|+|||++++...++... ......
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~----------------------~~~~l~~~~~~L~~gG~l~v~~~~~~~~-----~~~~~~ 163 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPD----------------------PASFVRACAKLVKPGGLVFFSTLNRNLK-----SYLLAI 163 (233)
T ss_pred cCCCccEEEEhhHhhccCC----------------------HHHHHHHHHHHcCCCcEEEEEecCCChH-----HHHHHH
Confidence 5578999999999998433 3456777888899999999876543211 001111
Q ss_pred H-HHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960 172 L-KDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219 (300)
Q Consensus 172 l-~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~ 219 (300)
+ .+.+..+. . ... .-...+.+++|+.+++++.| |++.+...
T Consensus 164 ~~~~~~~~~~-~----~~~-~~~~~~~~~~~~~~~l~~~G-f~~v~~~~ 205 (233)
T PRK05134 164 VGAEYVLRML-P----KGT-HDYKKFIKPSELAAWLRQAG-LEVQDITG 205 (233)
T ss_pred hhHHHHhhhc-C----ccc-CchhhcCCHHHHHHHHHHCC-CeEeeeee
Confidence 1 11111111 1 011 11224568999999999999 88877653
No 51
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.53 E-value=0.0023 Score=58.77 Aligned_cols=46 Identities=30% Similarity=0.633 Sum_probs=39.8
Q ss_pred CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC
Q 045960 92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF 160 (300)
Q Consensus 92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~ 160 (300)
+++|||+|.+.-|+|| | |+.+|.+.-.+-||+.|.+++...-+.+-
T Consensus 97 ~e~SVDlI~~Aqa~HW-----------------F------dle~fy~~~~rvLRk~Gg~iavW~Y~dd~ 142 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHW-----------------F------DLERFYKEAYRVLRKDGGLIAVWNYNDDF 142 (261)
T ss_pred CCcceeeehhhhhHHh-----------------h------chHHHHHHHHHHcCCCCCEEEEEEccCCC
Confidence 4999999999999999 2 68999999999999999888887766543
No 52
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.50 E-value=0.0015 Score=61.95 Aligned_cols=148 Identities=23% Similarity=0.266 Sum_probs=97.1
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+||..|.-++.+.. .| + =.|+--| |+=.|..=|+.+..+. +.+ ..+|..
T Consensus 118 ~VLDIGC~nGY~~frM~~------------~G---A-~~ViGiD-P~~lf~~QF~~i~~~l-------g~~-~~~~~l-- 170 (315)
T PF08003_consen 118 RVLDIGCNNGYYSFRMLG------------RG---A-KSVIGID-PSPLFYLQFEAIKHFL-------GQD-PPVFEL-- 170 (315)
T ss_pred EEEEecCCCcHHHHHHhh------------cC---C-CEEEEEC-CChHHHHHHHHHHHHh-------CCC-ccEEEc--
Confidence 799999999998875431 12 2 2455555 6666666666555442 111 233433
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA 162 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~ 162 (300)
|-.. +.|=+.+.+|.|||.-.|=-++. =...|+.-..-|+|||.|||..+..+....
T Consensus 171 plgv-E~Lp~~~~FDtVF~MGVLYHrr~----------------------Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 171 PLGV-EDLPNLGAFDTVFSMGVLYHRRS----------------------PLDHLKQLKDSLRPGGELVLETLVIDGDEN 227 (315)
T ss_pred Ccch-hhccccCCcCEEEEeeehhccCC----------------------HHHHHHHHHHhhCCCCEEEEEEeeecCCCc
Confidence 2222 23333678999999999877655 234455566789999999999876554332
Q ss_pred CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEE
Q 045960 163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV 217 (300)
Q Consensus 163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~ 217 (300)
. -++.++.+..| .-=|+-||..-++.+++..| |+-.++
T Consensus 228 ~---------------~L~P~~rYa~m-~nv~FiPs~~~L~~wl~r~g-F~~v~~ 265 (315)
T PF08003_consen 228 T---------------VLVPEDRYAKM-RNVWFIPSVAALKNWLERAG-FKDVRC 265 (315)
T ss_pred e---------------EEccCCcccCC-CceEEeCCHHHHHHHHHHcC-CceEEE
Confidence 2 25666667777 66678899999999999999 764443
No 53
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.47 E-value=0.01 Score=55.89 Aligned_cols=71 Identities=23% Similarity=0.367 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCc-ccCCHHHHHHHHHhc
Q 045960 131 SDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPI-YRASVDEVKQIVKKE 209 (300)
Q Consensus 131 ~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~-y~~s~eE~~~~i~~~ 209 (300)
+.+..|++.-.+-|+|||+|++...+....... + ...-++.+ .+|= +.||..++....++.
T Consensus 153 ~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---------------~--~~~~i~~y-iFPgG~lPs~~~i~~~~~~~ 214 (283)
T COG2230 153 ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---------------R--FPDFIDKY-IFPGGELPSISEILELASEA 214 (283)
T ss_pred ccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---------------c--chHHHHHh-CCCCCcCCCHHHHHHHHHhc
Confidence 447889999999999999999999888764320 0 01112333 3443 568999999999999
Q ss_pred CCeeEEEEEEE
Q 045960 210 GSFDIQEVETF 220 (300)
Q Consensus 210 gsF~I~~~e~~ 220 (300)
| |.+...+.+
T Consensus 215 ~-~~v~~~~~~ 224 (283)
T COG2230 215 G-FVVLDVESL 224 (283)
T ss_pred C-cEEehHhhh
Confidence 8 777665544
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.28 E-value=0.0013 Score=58.76 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=62.4
Q ss_pred EEEeeCCCCCcccHHHH------------HHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhc
Q 045960 3 RFADLGCSSGPNALLPT------------WEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEK 70 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~------------~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~ 70 (300)
++.|+|||.|-.|..+. ...|+.-++++. ..|.+++..-|+|
T Consensus 46 ~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp---------------------- 99 (201)
T PF05401_consen 46 RALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA----GLPHVEWIQADVP---------------------- 99 (201)
T ss_dssp EEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TT----------------------
T ss_pred eeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCC----------------------
Confidence 57899999999998654 566666666542 2355766666643
Q ss_pred CCCCCceeeeecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCcee
Q 045960 71 GHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRM 150 (300)
Q Consensus 71 ~~~~~~~f~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~ 150 (300)
. ..|...+|+++-|-.+++|+. ..|+..++..-.+-|+|||.|
T Consensus 100 -------------~-----~~P~~~FDLIV~SEVlYYL~~-------------------~~~L~~~l~~l~~~L~pgG~L 142 (201)
T PF05401_consen 100 -------------E-----FWPEGRFDLIVLSEVLYYLDD-------------------AEDLRAALDRLVAALAPGGHL 142 (201)
T ss_dssp -------------T--------SS-EEEEEEES-GGGSSS-------------------HHHHHHHHHHHHHTEEEEEEE
T ss_pred -------------C-----CCCCCCeeEEEEehHhHcCCC-------------------HHHHHHHHHHHHHHhCCCCEE
Confidence 2 247889999999999999987 567889999999999999999
Q ss_pred EEEE
Q 045960 151 VLTL 154 (300)
Q Consensus 151 vl~~ 154 (300)
|+.-
T Consensus 143 V~g~ 146 (201)
T PF05401_consen 143 VFGH 146 (201)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8844
No 55
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.28 E-value=0.0024 Score=57.21 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=38.1
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY 156 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g 156 (300)
+++.++|+++|+.+.||... | .+..+ .+ .......|+.-.+-|+|||++++....
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~-~-------~~d~~--~~-~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGT-P-------AVDIP--RA-MYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred hCCCCCCEEecCCCCccCCC-h-------HHHHH--HH-HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 57789999999999999432 1 11110 01 112467888899999999999996543
No 56
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.17 E-value=0.00023 Score=64.94 Aligned_cols=92 Identities=23% Similarity=0.452 Sum_probs=63.7
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM 170 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~ 170 (300)
|-.||+|+++||.++||..++|. .+.+ -...|||.|.++..|+|-+.--. =-.+-
T Consensus 133 f~ens~DLiisSlslHW~NdLPg---------------------~m~~-ck~~lKPDg~FiasmlggdTLyE---LR~sl 187 (325)
T KOG2940|consen 133 FKENSVDLIISSLSLHWTNDLPG---------------------SMIQ-CKLALKPDGLFIASMLGGDTLYE---LRCSL 187 (325)
T ss_pred ccccchhhhhhhhhhhhhccCch---------------------HHHH-HHHhcCCCccchhHHhccccHHH---HHHHh
Confidence 77899999999999999999884 1222 34679999999999987653211 11344
Q ss_pred HHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960 171 VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE 216 (300)
Q Consensus 171 al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~ 216 (300)
-|.+|-.+|=|+.- .-|+ -...++-.++..+| |....
T Consensus 188 qLAelER~GGiSph------iSPf--~qvrDiG~LL~rAG-F~m~t 224 (325)
T KOG2940|consen 188 QLAELEREGGISPH------ISPF--TQVRDIGNLLTRAG-FSMLT 224 (325)
T ss_pred hHHHHHhccCCCCC------cChh--hhhhhhhhHHhhcC-cccce
Confidence 56777788765532 2332 24667778888888 66443
No 57
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.12 E-value=0.0069 Score=53.34 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=62.9
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+||++|..++.+... .|+.+|+.-|.-. ..+ ......... .+ ..++-+ +
T Consensus 19 ~ilDiGcG~G~~~~~la~~---------------~p~~~v~gvD~~~---~~l----~~a~~~~~~-~~--l~ni~~--i 71 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQ---------------NPDKNFLGIEIHT---PIV----LAANNKANK-LG--LKNLHV--L 71 (194)
T ss_pred eEEEeCCCccHHHHHHHHh---------------CCCCCEEEEEeeH---HHH----HHHHHHHHH-hC--CCCEEE--E
Confidence 6999999999887754432 1345556555421 001 000011111 11 123322 3
Q ss_pred CCccc---cccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 83 PGSFY---TRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 83 pgSFy---~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
-|+.. ..++|++++|.++.++..+|-.+ +.. .+ .-....||+.-++-|||||.+++..
T Consensus 72 ~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~-~h~-~~------------r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 72 CGDANELLDKFFPDGSLSKVFLNFPDPWPKK-RHN-KR------------RITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ccCHHHHHHhhCCCCceeEEEEECCCcCCCC-Ccc-cc------------ccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 33332 34578889999999999999543 100 00 0001467888889999999998876
No 58
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.06 E-value=0.0019 Score=61.03 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=67.3
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
.+|+|+||++|.-|..+++.... ..+|+--|+... + |....+.+... .+.+=+.+
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~--------------~~~~~~iDiS~~-m------L~~a~~~l~~~----~p~~~v~~ 119 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ--------------PARYVPIDISAD-A------LKESAAALAAD----YPQLEVHG 119 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc--------------CCeEEEEECCHH-H------HHHHHHHHHhh----CCCceEEE
Confidence 47999999999988877665321 144555554321 1 00001111111 12333445
Q ss_pred cCCcccccc-CCCC----cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960 82 SPGSFYTRL-FPHN----FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY 156 (300)
Q Consensus 82 vpgSFy~~l-~P~~----sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g 156 (300)
+-|.|...+ +|.. ...++++.+++|+++. .|...||+.-++-|+|||+|++.+-.
T Consensus 120 i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~--------------------~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 120 ICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTP--------------------EEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EEEcccchhhhhcccccCCeEEEEecccccCCCH--------------------HHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 666776532 3333 4567788889999653 34678999999999999999987744
Q ss_pred cC
Q 045960 157 ND 158 (300)
Q Consensus 157 ~~ 158 (300)
..
T Consensus 180 ~~ 181 (301)
T TIGR03438 180 VK 181 (301)
T ss_pred CC
Confidence 43
No 59
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.05 E-value=0.0024 Score=61.63 Aligned_cols=105 Identities=16% Similarity=0.242 Sum_probs=63.2
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+||+.|..++.+. +. .|..+|...|.-. ..| ......... .+- .. ..+
T Consensus 199 ~VLDlGCG~G~ls~~la--------~~-------~p~~~v~~vDis~---~Al----~~A~~nl~~-n~l--~~---~~~ 250 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLA--------RH-------SPKIRLTLSDVSA---AAL----ESSRATLAA-NGL--EG---EVF 250 (342)
T ss_pred eEEEeccCcCHHHHHHH--------Hh-------CCCCEEEEEECCH---HHH----HHHHHHHHH-cCC--CC---EEE
Confidence 69999999998665322 11 2456788887531 111 111111211 111 11 113
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
++..+.. .++.+|+++|+-.+||.-.. ...+...|++.-++-|+|||.+++..
T Consensus 251 ~~D~~~~--~~~~fDlIvsNPPFH~g~~~-----------------~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 251 ASNVFSD--IKGRFDMIISNPPFHDGIQT-----------------SLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred Ecccccc--cCCCccEEEECCCccCCccc-----------------cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 3444443 35789999999999983321 12346788888899999999998765
No 60
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.04 E-value=0.00034 Score=54.75 Aligned_cols=100 Identities=25% Similarity=0.319 Sum_probs=54.5
Q ss_pred EEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeecC
Q 045960 4 FADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAASP 83 (300)
Q Consensus 4 iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~vp 83 (300)
|.|+||++|.++..+.... + ..|+.++..-|+-.+=....-+. . ...+ .+--|+.+=.
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~-----------~~~~~~~~gvD~s~~~l~~~~~~-------~-~~~~--~~~~~~~~D~ 58 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-D-----------AGPSSRVIGVDISPEMLELAKKR-------F-SEDG--PKVRFVQADA 58 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------------SEEEEEES-HHHHHHHHHH-------S-HHTT--TTSEEEESCT
T ss_pred CEEeecCCcHHHHHHHHHh-h-----------hcccceEEEEECCHHHHHHHHHh-------c-hhcC--CceEEEECCH
Confidence 7899999999998776652 1 11346666666422111110000 0 0001 1112322222
Q ss_pred CccccccCCCCcccEEEeccc-cccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCc
Q 045960 84 GSFYTRLFPHNFLDFVYSSYA-LHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQG 148 (300)
Q Consensus 84 gSFy~~l~P~~sv~~~~Ss~a-lHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG 148 (300)
.. . -++.+++|+++++.+ +|++++ +++..+|+.-++=|+|||
T Consensus 59 ~~-l--~~~~~~~D~v~~~~~~~~~~~~--------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 59 RD-L--PFSDGKFDLVVCSGLSLHHLSP--------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp TC-H--HHHSSSEEEEEE-TTGGGGSSH--------------------HHHHHHHHHHHHTEEEEE
T ss_pred hH-C--cccCCCeeEEEEcCCccCCCCH--------------------HHHHHHHHHHHHHhCCCC
Confidence 22 1 246779999999766 998665 457888999999999998
No 61
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.02 E-value=0.0035 Score=61.29 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=63.5
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+||++|.-++.+. +. .|..+|+..|... ..+................+ +..+
T Consensus 231 ~VLDLGCGtGvi~i~la--------~~-------~P~~~V~~vD~S~-------~Av~~A~~N~~~n~~~~~~~--v~~~ 286 (378)
T PRK15001 231 EIVDLGCGNGVIGLTLL--------DK-------NPQAKVVFVDESP-------MAVASSRLNVETNMPEALDR--CEFM 286 (378)
T ss_pred eEEEEeccccHHHHHHH--------Hh-------CCCCEEEEEECCH-------HHHHHHHHHHHHcCcccCce--EEEE
Confidence 69999999998655322 21 2568899988632 11111111221111100011 1223
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
.+..+..+ +..++|+|+|+--+|+.-.++. . ....+++.=.+-|+|||.+++..
T Consensus 287 ~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~------~-----------ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 287 INNALSGV-EPFRFNAVLCNPPFHQQHALTD------N-----------VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EccccccC-CCCCEEEEEECcCcccCccCCH------H-----------HHHHHHHHHHHhcccCCEEEEEE
Confidence 34455543 6678999999999998644331 1 12346666677899999998884
No 62
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.97 E-value=0.0047 Score=57.30 Aligned_cols=167 Identities=11% Similarity=0.093 Sum_probs=90.2
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
+++.|.+|++|-.++.++..+-..- ++. +=+|.-.| +|.=--..- .++-.+ .+-+..+++.-
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~-------~~~--~~~V~v~D-----inp~mL~vg--kqRa~~-~~l~~~~~~~w- 163 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQF-------GDR--ESKVTVLD-----INPHMLAVG--KQRAKK-RPLKASSRVEW- 163 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhcccc-------CCC--CceEEEEe-----CCHHHHHHH--HHHHhh-cCCCcCCceEE-
Confidence 5799999999999998766543322 222 23444444 332111110 011000 01111111221
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~ 161 (300)
+.|.=-.==||++|+|...+++.+--.-+++ ..+.+| ++-|||||++.|.-...-+..
T Consensus 164 ~~~dAE~LpFdd~s~D~yTiafGIRN~th~~------k~l~EA----------------YRVLKpGGrf~cLeFskv~~~ 221 (296)
T KOG1540|consen 164 VEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ------KALREA----------------YRVLKPGGRFSCLEFSKVENE 221 (296)
T ss_pred EeCCcccCCCCCCcceeEEEecceecCCCHH------HHHHHH----------------HHhcCCCcEEEEEEccccccH
Confidence 2223232239999999999999988644421 234444 578999999998777665532
Q ss_pred CCC----c------hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960 162 ATP----G------EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE 216 (300)
Q Consensus 162 ~~~----~------~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~ 216 (300)
+.. + -.+...+....+.+..=-|-+. -+|+.||+..+|+++| |....
T Consensus 222 ~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~-------rfp~qe~f~~miedaG-F~~~~ 278 (296)
T KOG1540|consen 222 PLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR-------RFPPQEEFASMIEDAG-FSSVN 278 (296)
T ss_pred HHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh-------cCCCHHHHHHHHHHcC-Ccccc
Confidence 211 0 2233333333333322222222 2588999999999999 77654
No 63
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.96 E-value=0.021 Score=51.65 Aligned_cols=80 Identities=24% Similarity=0.266 Sum_probs=55.3
Q ss_pred CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960 94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK 173 (300)
Q Consensus 94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~ 173 (300)
..+|+++-..++|= +|. .+...+++.-.+-|+|||+.++.........
T Consensus 115 ~~fd~v~D~~~~~~---l~~-----------------~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~------------ 162 (218)
T PRK13255 115 ADVDAVYDRAALIA---LPE-----------------EMRERYVQQLAALLPAGCRGLLVTLDYPQEE------------ 162 (218)
T ss_pred CCeeEEEehHhHhh---CCH-----------------HHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc------------
Confidence 36899999999995 442 3456778888899999997555544433210
Q ss_pred HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960 174 DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS 223 (300)
Q Consensus 174 ~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~ 223 (300)
. .-|-|..+++|+++.+. +.|.|+.++....+
T Consensus 163 ---------------~-~gPp~~~~~~el~~~~~--~~~~i~~~~~~~~~ 194 (218)
T PRK13255 163 ---------------L-AGPPFSVSDEEVEALYA--GCFEIELLERQDVL 194 (218)
T ss_pred ---------------C-CCCCCCCCHHHHHHHhc--CCceEEEeeecccc
Confidence 1 22446889999999995 33899888766543
No 64
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.91 E-value=0.026 Score=53.94 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.2
Q ss_pred cccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960 194 IYRASVDEVKQIVKKEGSFDIQEVETFN 221 (300)
Q Consensus 194 ~y~~s~eE~~~~i~~~gsF~I~~~e~~~ 221 (300)
.|+.+.+|++.++++.| |+|.+.+...
T Consensus 275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~ 301 (315)
T PLN02585 275 AYLHAEADVERALKKAG-WKVARREMTA 301 (315)
T ss_pred eeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence 46779999999999999 9998877664
No 65
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.90 E-value=0.0071 Score=53.45 Aligned_cols=99 Identities=20% Similarity=0.183 Sum_probs=55.7
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
-+|.|+||++|..++.+... .|..+|+.-|.-.. .-...+ +...+ .+ ..+ +.-
T Consensus 47 ~~VLDiGcGtG~~al~la~~---------------~~~~~V~giD~s~~-~l~~A~------~~~~~-~~--l~~--i~~ 99 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIA---------------RPELKVTLVDSLGK-KIAFLR------EVAAE-LG--LKN--VTV 99 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHH---------------CCCCeEEEEeCcHH-HHHHHH------HHHHH-cC--CCC--EEE
Confidence 37999999999888765431 12345666553210 001110 01111 11 122 222
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
+.++..+ +-+.+++|+++|... . ++..|++..++-|+|||++++..
T Consensus 100 ~~~d~~~-~~~~~~fDlV~~~~~-~-------------------------~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 100 VHGRAEE-FGQEEKFDVVTSRAV-A-------------------------SLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EeccHhh-CCCCCCccEEEEccc-c-------------------------CHHHHHHHHHHhcCCCeEEEEEe
Confidence 3343333 223678999998641 1 24668888899999999999875
No 66
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.87 E-value=0.0051 Score=48.84 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=28.5
Q ss_pred CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
.++|++++..+.++ +..+++.-.+.|+|||++++++
T Consensus 87 ~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGGL-------------------------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcchh-------------------------HHHHHHHHHHHcCCCCEEEEEe
Confidence 58999988654332 3578888999999999999986
No 67
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.83 E-value=0.0088 Score=51.69 Aligned_cols=71 Identities=15% Similarity=0.046 Sum_probs=42.1
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHH--HhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFL--NQFESDFSTFLKFRSEELKSQGRMVLTLLYN 157 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~--~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~ 157 (300)
+-++.+..+ .+++|+++|+..+|.....+.. .+...-++. ..-...+..||+.-.+-|+|||++++...+.
T Consensus 71 ~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 71 VMTDLFKGV--RGKFDVILFNPPYLPLEDDLRR---GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred EEccccccc--CCcccEEEECCCCCCCcchhcc---cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 445665533 4589999999988875432210 000000100 0011226778888889999999998876544
No 68
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.79 E-value=0.017 Score=51.97 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=56.1
Q ss_pred CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960 94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK 173 (300)
Q Consensus 94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~ 173 (300)
..+|.++-..++|= +|. .+...+++.-.+-|+|||++++.....+...
T Consensus 112 ~~fD~i~D~~~~~~---l~~-----------------~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~------------ 159 (213)
T TIGR03840 112 GPVDAVYDRAALIA---LPE-----------------EMRQRYAAHLLALLPPGARQLLITLDYDQSE------------ 159 (213)
T ss_pred CCcCEEEechhhcc---CCH-----------------HHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC------------
Confidence 46899999999884 552 2356678888999999998777665443210
Q ss_pred HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960 174 DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS 223 (300)
Q Consensus 174 ~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~ 223 (300)
. .-|-|..+++|+++.+.. .|+|+.++....+
T Consensus 160 ---------------~-~gpp~~~~~~eL~~~f~~--~~~i~~~~~~~~~ 191 (213)
T TIGR03840 160 ---------------M-AGPPFSVSPAEVEALYGG--HYEIELLESRDVL 191 (213)
T ss_pred ---------------C-CCcCCCCCHHHHHHHhcC--CceEEEEeecccc
Confidence 1 224477899999998863 3888888766543
No 69
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.75 E-value=0.0054 Score=45.47 Aligned_cols=102 Identities=26% Similarity=0.247 Sum_probs=59.8
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+||+.|.++..+.. .+..+++..|+..+-....-+.. .... ..++-+ +
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~--------~~~~--~~~~~~--~ 52 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAA--------AALL--ADNVEV--L 52 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHH--------hccc--ccceEE--E
Confidence 589999999987765533 11256666675443222221100 0000 011111 1
Q ss_pred CCcccccc-CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960 83 PGSFYTRL-FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT 153 (300)
Q Consensus 83 pgSFy~~l-~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~ 153 (300)
-+++.... .+..++|+++++..+|+. ..+...+++.-.+-|+|||.+++.
T Consensus 53 ~~~~~~~~~~~~~~~d~i~~~~~~~~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 53 KGDAEELPPEADESFDVIISDPPLHHL---------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EcChhhhccccCCceEEEEEccceeeh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 23333333 366789999999999984 123566777777778999999876
No 70
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.70 E-value=0.0081 Score=54.36 Aligned_cols=100 Identities=26% Similarity=0.409 Sum_probs=68.8
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+|+++|..++.++ +. -|.+++..=|||.. . +.... . .+| .-+
T Consensus 103 ~vvDvGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~v-----~---~~~~~------~---~rv--~~~ 148 (241)
T PF00891_consen 103 TVVDVGGGSGHFAIALA--------RA-------YPNLRATVFDLPEV-----I---EQAKE------A---DRV--EFV 148 (241)
T ss_dssp EEEEET-TTSHHHHHHH--------HH-------STTSEEEEEE-HHH-----H---CCHHH------T---TTE--EEE
T ss_pred EEEeccCcchHHHHHHH--------HH-------CCCCcceeeccHhh-----h---hcccc------c---ccc--ccc
Confidence 69999999998776432 22 35788999998853 1 11111 0 223 338
Q ss_pred CCccccccCCCCcccEEEeccccc-cccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccC--ceeEEEEeecCC
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALH-WLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQ--GRMVLTLLYNDN 159 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alH-WLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~G--G~~vl~~~g~~~ 159 (300)
||.|+ .=+|. .|+++-...|| | + .++-..+|+.-++.|+|| |++++.=.-.++
T Consensus 149 ~gd~f-~~~P~--~D~~~l~~vLh~~-~--------------------d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 149 PGDFF-DPLPV--ADVYLLRHVLHDW-S--------------------DEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp ES-TT-TCCSS--ESEEEEESSGGGS----------------------HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred cccHH-hhhcc--ccceeeehhhhhc-c--------------------hHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 99999 77888 99999999998 6 2 235578899999999999 999887655544
Q ss_pred C
Q 045960 160 F 160 (300)
Q Consensus 160 ~ 160 (300)
.
T Consensus 205 ~ 205 (241)
T PF00891_consen 205 D 205 (241)
T ss_dssp S
T ss_pred C
Confidence 3
No 71
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.67 E-value=0.0067 Score=53.87 Aligned_cols=46 Identities=20% Similarity=0.139 Sum_probs=31.8
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
+.|.+.+.+-+.+++|++++..+++++ |. .-.+-|+|||++++.+.
T Consensus 131 ~~~d~~~~~~~~~~fD~I~~~~~~~~~---~~-------------------------~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 131 RHGDGWKGWPAYAPFDRILVTAAAPEI---PR-------------------------ALLEQLKEGGILVAPVG 176 (212)
T ss_pred EECCcccCCCcCCCcCEEEEccCchhh---hH-------------------------HHHHhcCCCcEEEEEEc
Confidence 445554444445789999999888773 31 01356999999998875
No 72
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.67 E-value=0.0062 Score=52.52 Aligned_cols=108 Identities=20% Similarity=0.272 Sum_probs=63.7
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+||++|.-++.+.. ..|...|...|.-.+=-...=+ .... .+ ..+ +..+
T Consensus 34 ~vLDlG~G~G~i~~~la~---------------~~~~~~v~~vDi~~~a~~~a~~-------n~~~-n~--~~~--v~~~ 86 (170)
T PF05175_consen 34 RVLDLGCGSGVISLALAK---------------RGPDAKVTAVDINPDALELAKR-------NAER-NG--LEN--VEVV 86 (170)
T ss_dssp EEEEETSTTSHHHHHHHH---------------TSTCEEEEEEESBHHHHHHHHH-------HHHH-TT--CTT--EEEE
T ss_pred eEEEecCChHHHHHHHHH---------------hCCCCEEEEEcCCHHHHHHHHH-------HHHh-cC--ccc--cccc
Confidence 799999999988875532 1245678887753221111111 1111 11 123 4445
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
....+..+- +.++|+++|+-=+|+-.. .-..-+..|++.=.+=|+|||.+++...
T Consensus 87 ~~d~~~~~~-~~~fD~Iv~NPP~~~~~~-----------------~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 87 QSDLFEALP-DGKFDLIVSNPPFHAGGD-----------------DGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp ESSTTTTCC-TTCEEEEEE---SBTTSH-----------------CHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccc-ccceeEEEEccchhcccc-----------------cchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 567776654 889999999977666322 0011256677777889999999988653
No 73
>PTZ00146 fibrillarin; Provisional
Probab=96.65 E-value=0.02 Score=54.15 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=14.8
Q ss_pred EEEeeCCCCCcccHHHHH
Q 045960 3 RFADLGCSSGPNALLPTW 20 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~ 20 (300)
+|+|+||++|..|..+..
T Consensus 135 ~VLDLGaG~G~~t~~lAd 152 (293)
T PTZ00146 135 KVLYLGAASGTTVSHVSD 152 (293)
T ss_pred EEEEeCCcCCHHHHHHHH
Confidence 799999999998765543
No 74
>PRK05785 hypothetical protein; Provisional
Probab=96.62 E-value=0.0063 Score=55.12 Aligned_cols=27 Identities=41% Similarity=0.503 Sum_probs=21.0
Q ss_pred CccccccCCCCcccEEEeccccccccC
Q 045960 84 GSFYTRLFPHNFLDFVYSSYALHWLSR 110 (300)
Q Consensus 84 gSFy~~l~P~~sv~~~~Ss~alHWLS~ 110 (300)
+++-.-=||++|+|+++|+++|||+.+
T Consensus 99 ~d~~~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 99 GSFEALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred echhhCCCCCCCEEEEEecChhhccCC
Confidence 344444478999999999999999554
No 75
>PRK04266 fibrillarin; Provisional
Probab=96.61 E-value=0.035 Score=50.46 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=18.2
Q ss_pred HHHHHHHHhhccCceeEEEEeec
Q 045960 135 TFLKFRSEELKSQGRMVLTLLYN 157 (300)
Q Consensus 135 ~fL~~Ra~EL~~GG~~vl~~~g~ 157 (300)
.+|+.-.+-|||||++++++..+
T Consensus 157 ~~L~~~~r~LKpGG~lvI~v~~~ 179 (226)
T PRK04266 157 IAIDNAEFFLKDGGYLLLAIKAR 179 (226)
T ss_pred HHHHHHHHhcCCCcEEEEEEecc
Confidence 35666777899999999997654
No 76
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.60 E-value=0.0084 Score=57.66 Aligned_cols=44 Identities=32% Similarity=0.341 Sum_probs=35.1
Q ss_pred CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
..+|+|=+-.|||.+=. + ++-.+.||+.-++-|+|||+++.+++
T Consensus 144 ~~FDvVScQFalHY~Fe-------s-----------e~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAFE-------S-----------EEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp S-EEEEEEES-GGGGGS-------S-----------HHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCcceeehHHHHHHhcC-------C-----------HHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 58999999999999533 1 23357899999999999999999996
No 77
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.58 E-value=0.009 Score=53.49 Aligned_cols=46 Identities=26% Similarity=0.169 Sum_probs=31.1
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
+-|....-..+...+|.+++..+.+. +|. + -.+-|+|||+|++...
T Consensus 132 ~~gd~~~~~~~~~~fD~I~~~~~~~~---~~~----------~---------------l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 132 IVGDGTLGYEENAPYDRIYVTAAGPD---IPK----------P---------------LIEQLKDGGIMVIPVG 177 (212)
T ss_pred EECCcccCCCcCCCcCEEEECCCccc---chH----------H---------------HHHhhCCCcEEEEEEc
Confidence 44555554566788999999888654 331 1 1235999999998763
No 78
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.56 E-value=0.0094 Score=55.43 Aligned_cols=89 Identities=20% Similarity=0.235 Sum_probs=61.1
Q ss_pred ccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHH
Q 045960 96 LDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDM 175 (300)
Q Consensus 96 v~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~m 175 (300)
+|.|.|+-.+|- -+|...||++-++-|+|||+++++-.-|.-..-..+-.+.+.+...
T Consensus 159 fDaVvcsevleH----------------------V~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~i 216 (282)
T KOG1270|consen 159 FDAVVCSEVLEH----------------------VKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRI 216 (282)
T ss_pred cceeeeHHHHHH----------------------HhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHh
Confidence 799999888887 3457899999999999999999998766422111111233333335
Q ss_pred HHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEE
Q 045960 176 ISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV 217 (300)
Q Consensus 176 v~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~ 217 (300)
|-.|- -.+-=|.+++|+..+++.++ +.++.+
T Consensus 217 vp~Gt----------h~~ekfi~p~e~~~~l~~~~-~~v~~v 247 (282)
T KOG1270|consen 217 VPKGT----------HTWEKFINPEELTSILNANG-AQVNDV 247 (282)
T ss_pred cCCCC----------cCHHHcCCHHHHHHHHHhcC-cchhhh
Confidence 55553 23344578999999999986 665554
No 79
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.55 E-value=0.0061 Score=56.45 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=53.3
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCc-eeeee
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGS-CFVAA 81 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~-~f~~~ 81 (300)
+|.|+||++|..+..+...+ . .....+|+..|+-.+ .+- ...... ++ -|..
T Consensus 88 ~vLDiGcG~G~~~~~l~~~~----~--------~~~~~~v~giD~s~~---~l~---------~A~~~~---~~~~~~~- 139 (272)
T PRK11088 88 ALLDIGCGEGYYTHALADAL----P--------EITTMQLFGLDISKV---AIK---------YAAKRY---PQVTFCV- 139 (272)
T ss_pred eEEEECCcCCHHHHHHHHhc----c--------cccCCeEEEECCCHH---HHH---------HHHHhC---CCCeEEE-
Confidence 69999999998776554321 1 111246777775221 110 011100 12 2222
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN 157 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~ 157 (300)
++..+--||++++|+++|..+-.. ++.-++-|+|||++++...|.
T Consensus 140 --~d~~~lp~~~~sfD~I~~~~~~~~-----------------------------~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 140 --ASSHRLPFADQSLDAIIRIYAPCK-----------------------------AEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred --eecccCCCcCCceeEEEEecCCCC-----------------------------HHHHHhhccCCCEEEEEeCCC
Confidence 233333478999999998764211 111345799999999887554
No 80
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.54 E-value=0.031 Score=48.61 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=27.4
Q ss_pred CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960 94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY 156 (300)
Q Consensus 94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g 156 (300)
.++|++++..+.+. +..+++.-.+-|+|||++++...+
T Consensus 96 ~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 96 GKADAIFIGGSGGN-------------------------LTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred cCCCEEEECCCccC-------------------------HHHHHHHHHHhcCCCeEEEEEEec
Confidence 57899998765432 334566667889999999886643
No 81
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.50 E-value=0.0076 Score=59.14 Aligned_cols=163 Identities=17% Similarity=0.220 Sum_probs=88.6
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
.++|+||++|..++.+... .|+.+++.-|.-..=-..+-+.+ .. .+..++.+.-.
T Consensus 125 ~vLEIGcGsG~~ll~lA~~---------------~P~~~~iGIEI~~~~i~~a~~ka-------~~---~gL~NV~~i~~ 179 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKN---------------NPNKLFIGIEIHTPSIEQVLKQI-------EL---LNLKNLLIINY 179 (390)
T ss_pred eEEEEcCcccHHHHHHHHh---------------CCCCCEEEEECCHHHHHHHHHHH-------HH---cCCCcEEEEEC
Confidence 5899999999877644321 24556666664221111111111 11 11235444332
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA 162 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~ 162 (300)
-....-..+|++++|.++.++...|..+ + . ++. -...||+.-++-|+|||.+.+.. ++.
T Consensus 180 DA~~ll~~~~~~s~D~I~lnFPdPW~Kk-r---------H---RRl---v~~~fL~e~~RvLkpGG~l~l~T---D~~-- 238 (390)
T PRK14121 180 DARLLLELLPSNSVEKIFVHFPVPWDKK-P---------H---RRV---ISEDFLNEALRVLKPGGTLELRT---DSE-- 238 (390)
T ss_pred CHHHhhhhCCCCceeEEEEeCCCCcccc-c---------h---hhc---cHHHHHHHHHHHcCCCcEEEEEE---ECH--
Confidence 2222335689999999999999999433 1 0 111 13678999999999999987765 111
Q ss_pred CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960 163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF 220 (300)
Q Consensus 163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~ 220 (300)
+....++..|...+..+. +...+-|.+..|. +.+-....| -.|-++...
T Consensus 239 ---~y~~~~~e~~~~~~~~~~---~~~~~~~~~i~Tk--yE~r~~~~G-~~Iy~l~~~ 287 (390)
T PRK14121 239 ---LYFEFSLELFLKLPKAKI---EIKKNAQLEVSSK--YEDRWKKQN-KDIYDLRIY 287 (390)
T ss_pred ---HHHHHHHHHHHhCCCcee---ecccCCCCCCCCH--HHHHHHHCC-CCEEEEEEE
Confidence 345566666655543332 1111344444444 444444555 445555444
No 82
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.48 E-value=0.032 Score=51.39 Aligned_cols=165 Identities=15% Similarity=0.147 Sum_probs=94.0
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|...||+.|...+-+++. .+.|.+.||..|--.|-=+.+=++ ..+.. +.-..|+.=.
T Consensus 74 ~ilEvGCGvGNtvfPll~~-------------~~n~~l~v~acDfsp~Ai~~vk~~-----~~~~e----~~~~afv~Dl 131 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKT-------------SPNNRLKVYACDFSPRAIELVKKS-----SGYDE----SRVEAFVWDL 131 (264)
T ss_pred hheeeccCCCcccchhhhc-------------CCCCCeEEEEcCCChHHHHHHHhc-----cccch----hhhcccceec
Confidence 5889999999766644421 244559999988443322111111 00100 0011233222
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA 162 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~ 162 (300)
-++=-..-++.+|+|++..-+.| |-+|+ +. +.+-++.-.+=|||||.+++-=-|+.+-.
T Consensus 132 t~~~~~~~~~~~svD~it~IFvL---SAi~p-----ek------------~~~a~~nl~~llKPGG~llfrDYg~~Dla- 190 (264)
T KOG2361|consen 132 TSPSLKEPPEEGSVDIITLIFVL---SAIHP-----EK------------MQSVIKNLRTLLKPGGSLLFRDYGRYDLA- 190 (264)
T ss_pred cchhccCCCCcCccceEEEEEEE---eccCh-----HH------------HHHHHHHHHHHhCCCcEEEEeecccchHH-
Confidence 22225566778888887665553 55653 11 45556667788999999988777776421
Q ss_pred CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960 163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF 220 (300)
Q Consensus 163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~ 220 (300)
-++-+ .+-.|++...-.=.-.+.|+-+.+|++.++.++| |...+++.-
T Consensus 191 --------qlRF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~ 238 (264)
T KOG2361|consen 191 --------QLRFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD 238 (264)
T ss_pred --------HHhcc-CCceeecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence 11111 3334443222110026889999999999999998 776665544
No 83
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.34 E-value=0.022 Score=50.58 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=30.2
Q ss_pred CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
|++..-+.+..++|.+++..++++ +|+ . -.+-|+|||+|++.+.
T Consensus 131 ~d~~~~~~~~~~fD~Ii~~~~~~~---~~~---------------------~----l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 131 GDGKRGLEKHAPFDAIIVTAAAST---IPS---------------------A----LVRQLKDGGVLVIPVE 174 (205)
T ss_pred CCcccCCccCCCccEEEEccCcch---hhH---------------------H----HHHhcCcCcEEEEEEc
Confidence 444443444578999999999887 331 0 1245999999988764
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.33 E-value=0.012 Score=53.03 Aligned_cols=124 Identities=16% Similarity=0.136 Sum_probs=65.4
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
.+|.|+||++|..++.+... .|..+++..|.-..=.... . ... ...+ ..+ +.-
T Consensus 89 ~~ilDig~G~G~~~~~l~~~---------------~~~~~v~~iD~~~~~~~~a----~---~~~-~~~~--~~~--~~~ 141 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKE---------------RPDARVTAVDISPEALAVA----R---KNA-ARLG--LDN--VTF 141 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHH---------------CCCCEEEEEECCHHHHHHH----H---HHH-HHcC--CCe--EEE
Confidence 37999999999887765432 1235677666321111100 0 011 1111 112 223
Q ss_pred cCCccccccCCCCcccEEEeccccccccC---CCCCCCC--CHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSR---MPKGQGN--ESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~---vP~~~~n--~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
+-+.+.. .+|++++|+++|+--.+..+. ++..+.. |..... -......++..|++.-.+-|+|||.+++..
T Consensus 142 ~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 142 LQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALF-GGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred EECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHc-CCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4456655 457889999999755443221 1111000 111000 011223557788998999999999998865
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=96.25 E-value=0.041 Score=49.36 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=63.6
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHH--hHHHHHHHHHHHHHHhhccCceeEEEEeecCC
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLN--QFESDFSTFLKFRSEELKSQGRMVLTLLYNDN 159 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~--q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~ 159 (300)
+-+++.. .+|.+++|+++++--.+.-+.... . ......+|.. --..++..|++.-.+-|+|||++++......+
T Consensus 89 ~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~ 164 (223)
T PRK14967 89 RRGDWAR-AVEFRPFDVVVSNPPYVPAPPDAP--P-SRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG 164 (223)
T ss_pred EECchhh-hccCCCeeEEEECCCCCCCCcccc--c-ccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC
Confidence 3456655 467889999999854333221100 0 0001111110 11234677888888899999999877644422
Q ss_pred CCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCC
Q 045960 160 FHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGS 211 (300)
Q Consensus 160 ~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gs 211 (300)
+.++++.+...|. .-+.+... .+|+ .+..-....++++.|.
T Consensus 165 --------~~~~~~~l~~~g~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 205 (223)
T PRK14967 165 --------VERTLTRLSEAGL-DAEVVASQ-WIPF-GPVLRARAAWLERRGL 205 (223)
T ss_pred --------HHHHHHHHHHCCC-CeEEEEee-ccCc-cHHHHHHHHHHHHcCC
Confidence 3355555555553 44444555 5664 3333345577888883
No 86
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.92 E-value=0.025 Score=49.27 Aligned_cols=50 Identities=22% Similarity=0.217 Sum_probs=35.3
Q ss_pred cCCCCcccEEEeccccc----cccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 90 LFPHNFLDFVYSSYALH----WLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 90 l~P~~sv~~~~Ss~alH----WLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
.+|.+++|++++..+.| |.-..+ +...+...+|+.-.+-|+|||++++..
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~---------------~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHL---------------RSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHH---------------HHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 36778899999977643 422111 112356788999999999999999875
No 87
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.90 E-value=0.09 Score=46.84 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=70.3
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM 170 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~ 170 (300)
||++|+|.|+-|-+|+=+.+ |..|.+ +=|+-|.+.+++|+.-+ -..
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~-------P~~vL~------------------EmlRVgr~~IVsFPNFg---------~W~ 116 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRR-------PDEVLE------------------EMLRVGRRAIVSFPNFG---------HWR 116 (193)
T ss_pred CCCCCccEEehHhHHHhHhH-------HHHHHH------------------HHHHhcCeEEEEecChH---------HHH
Confidence 89999999999999988766 445443 23677999999995322 245
Q ss_pred HHHHHHHcCCCchhhhcc---ccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecc
Q 045960 171 VLKDMISEGLAEESKVKS---FEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSW 224 (300)
Q Consensus 171 al~~mv~eG~i~~e~~d~---f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~ 224 (300)
.-..+.-.|..+..+.-- +.+.++.+-|..+++...++.| ++|++-..+...+
T Consensus 117 ~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 117 NRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLDGGR 172 (193)
T ss_pred HHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEcCCC
Confidence 556677778877654321 3123445679999999999998 8888877775443
No 88
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.89 E-value=0.0068 Score=54.72 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=28.2
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT 153 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~ 153 (300)
++++|+|+++..-||+= .||..||.--.+-|||||.|.+.
T Consensus 118 L~~~svDv~VfcLSLMG-----------------------Tn~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 118 LEDESVDVAVFCLSLMG-----------------------TNWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp --TT-EEEEEEES---S-----------------------S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCceeEEEEEhhhhC-----------------------CCcHHHHHHHHheeccCcEEEEE
Confidence 59999999998888763 25788888889999999998764
No 89
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=95.80 E-value=0.028 Score=44.47 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=34.0
Q ss_pred cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
.++++++|+++++-=.+.....+ ..-.++...|++.=.+=|+|||.+++...
T Consensus 65 ~~~~~~~D~Iv~npP~~~~~~~~--------------~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 65 PLPDGKFDLIVTNPPYGPRSGDK--------------AALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TCTTT-EEEEEE--STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hccCceeEEEEECCCCccccccc--------------hhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 47888999999986665432211 11122567889989999999999998864
No 90
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.78 E-value=0.039 Score=49.23 Aligned_cols=99 Identities=18% Similarity=0.118 Sum_probs=53.5
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|+||++|..|..+.... .++.+|+-.|.-. .+.+.. ...+.. .+ ..++ ..+
T Consensus 80 ~VLDiG~GsG~~a~~la~~~--------------~~~g~V~~vD~~~----~~~~~A---~~~~~~-~g--~~~v--~~~ 133 (215)
T TIGR00080 80 KVLEIGTGSGYQAAVLAEIV--------------GRDGLVVSIERIP----ELAEKA---ERRLRK-LG--LDNV--IVI 133 (215)
T ss_pred EEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCH----HHHHHH---HHHHHH-CC--CCCe--EEE
Confidence 79999999999997543321 1124555555311 111111 111111 11 1222 223
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
.++...-+.+...+|++++..+.+. +|+ .-.+-|+|||+|++.+.
T Consensus 134 ~~d~~~~~~~~~~fD~Ii~~~~~~~---~~~-------------------------~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 134 VGDGTQGWEPLAPYDRIYVTAAGPK---IPE-------------------------ALIDQLKEGGILVMPVG 178 (215)
T ss_pred ECCcccCCcccCCCCEEEEcCCccc---ccH-------------------------HHHHhcCcCcEEEEEEc
Confidence 3455444444568999998877654 331 12345999999998763
No 91
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=95.74 E-value=0.074 Score=47.13 Aligned_cols=103 Identities=23% Similarity=0.325 Sum_probs=67.7
Q ss_pred EEEeeCCCCCcccHHHH--------------HHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhh
Q 045960 3 RFADLGCSSGPNALLPT--------------WEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRT 68 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~--------------~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~ 68 (300)
++.|+||++|.-|+..+ .+.++.+++.+.+.| .+.++|.--|-|.- ...++
T Consensus 37 ~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg--~~n~~vv~g~Ap~~-----L~~~~-------- 101 (187)
T COG2242 37 RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG--VDNLEVVEGDAPEA-----LPDLP-------- 101 (187)
T ss_pred EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CCcEEEEeccchHh-----hcCCC--------
Confidence 58999999999999877 346777777777666 34577777775531 11111
Q ss_pred hcCCCCCceeeeecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCc
Q 045960 69 EKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQG 148 (300)
Q Consensus 69 ~~~~~~~~~f~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG 148 (300)
++..+| ++|| ++ ....|+.=.+-|+|||
T Consensus 102 ----~~daiF---IGGg--~~-------------------------------------------i~~ile~~~~~l~~gg 129 (187)
T COG2242 102 ----SPDAIF---IGGG--GN-------------------------------------------IEEILEAAWERLKPGG 129 (187)
T ss_pred ----CCCEEE---ECCC--CC-------------------------------------------HHHHHHHHHHHcCcCC
Confidence 123466 3333 11 3445555677899999
Q ss_pred eeEEEEeecCCCCCCCchHHHHHHHHHHHcCC
Q 045960 149 RMVLTLLYNDNFHATPGEPMLMVLKDMISEGL 180 (300)
Q Consensus 149 ~~vl~~~g~~~~~~~~~~~l~~al~~mv~eG~ 180 (300)
++|++..-. +.+..++..|.+.|.
T Consensus 130 rlV~naitl--------E~~~~a~~~~~~~g~ 153 (187)
T COG2242 130 RLVANAITL--------ETLAKALEALEQLGG 153 (187)
T ss_pred eEEEEeecH--------HHHHHHHHHHHHcCC
Confidence 999998544 446677777777775
No 92
>PRK14968 putative methyltransferase; Provisional
Probab=95.73 E-value=0.17 Score=43.18 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=38.1
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHh------HHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQ------FESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q------~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
.+.+...+ ++.++|+++++..+++-. |. ..+...+... .......|++.-.+-|+|||.+++...
T Consensus 79 ~~d~~~~~-~~~~~d~vi~n~p~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 79 RSDLFEPF-RGDKFDVILFNPPYLPTE--EE-----EEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred eccccccc-cccCceEEEECCCcCCCC--ch-----hhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 45555544 556899999876654311 11 0111111100 123357789999999999999988763
No 93
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.70 E-value=0.11 Score=48.73 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhccCceeEEEEe
Q 045960 132 DFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 132 D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
....+++.-.+-|+|||++++.++
T Consensus 229 ~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 229 LVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEC
Confidence 456788888889999999998875
No 94
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.54 E-value=0.089 Score=47.30 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=98.4
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.++||++|-.+..+.. .-|.++..=+|...+-+.++-.-+.... +.+ -.+++..= |
T Consensus 28 ~vLEiaSGtGqHa~~FA~---------------~lP~l~WqPSD~~~~~~~sI~a~~~~~~--~~N----v~~P~~lD-v 85 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQ---------------ALPHLTWQPSDPDDNLRPSIRAWIAEAG--LPN----VRPPLALD-V 85 (204)
T ss_pred eEEEEcCCccHHHHHHHH---------------HCCCCEEcCCCCChHHHhhHHHHHHhcC--Ccc----cCCCeEee-c
Confidence 488999999987765532 2367888889999988877765333211 000 00112110 1
Q ss_pred CCccccc----cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960 83 PGSFYTR----LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND 158 (300)
Q Consensus 83 pgSFy~~----l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~ 158 (300)
...--.- -++..++|.++|.+.+|-++- + --..+++.-++-|++||.|++.-+-..
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~--------~------------~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPW--------S------------AVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCH--------H------------HHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 1110000 126789999999999999443 1 124567778899999999998877665
Q ss_pred CCCCCCc--hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeE
Q 045960 159 NFHATPG--EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDI 214 (300)
Q Consensus 159 ~~~~~~~--~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I 214 (300)
++..++. ..+...|++ - +--|-.|..+++.++-++.| ++.
T Consensus 146 ~G~~ts~SN~~FD~sLr~--------------r-dp~~GiRD~e~v~~lA~~~G-L~l 187 (204)
T PF06080_consen 146 DGKFTSESNAAFDASLRS--------------R-DPEWGIRDIEDVEALAAAHG-LEL 187 (204)
T ss_pred CCEeCCcHHHHHHHHHhc--------------C-CCCcCccCHHHHHHHHHHCC-Ccc
Confidence 5554443 556666653 1 43467899999999999998 443
No 95
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.44 E-value=0.051 Score=48.51 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=19.6
Q ss_pred CccccccCCCCcccEEEeccccccc
Q 045960 84 GSFYTRLFPHNFLDFVYSSYALHWL 108 (300)
Q Consensus 84 gSFy~~l~P~~sv~~~~Ss~alHWL 108 (300)
++... -+|++++|+|+++.+||++
T Consensus 95 ~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 95 GSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred eeccC-CCCCCCEEEEEECChhhhC
Confidence 44555 5789999999999999875
No 96
>PLN03075 nicotianamine synthase; Provisional
Probab=95.40 E-value=0.099 Score=49.61 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=30.9
Q ss_pred CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
...+|+||+. +||-+.+- |-...|+.-++-|+|||.+++-+
T Consensus 193 l~~FDlVF~~-ALi~~dk~--------------------~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 193 LKEYDVVFLA-ALVGMDKE--------------------EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCCcCEEEEe-cccccccc--------------------cHHHHHHHHHHhcCCCcEEEEec
Confidence 3679999999 66654331 23566777889999999998887
No 97
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=95.27 E-value=0.11 Score=48.69 Aligned_cols=42 Identities=12% Similarity=0.081 Sum_probs=29.9
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN 157 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~ 157 (300)
.+++++|+++++...++ +..++..-.+-|+|||++++.....
T Consensus 221 ~~~~~fDlVvan~~~~~-------------------------l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 221 PIEGKADVIVANILAEV-------------------------IKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred ccCCCceEEEEecCHHH-------------------------HHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 45678999999865443 2345556678899999998875443
No 98
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.20 E-value=0.16 Score=50.24 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=35.0
Q ss_pred CCCCcccEEEecc---ccccccCCCCCCC--CCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 91 FPHNFLDFVYSSY---ALHWLSRMPKGQG--NESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 91 ~P~~sv~~~~Ss~---alHWLS~vP~~~~--n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
++.+++|.+++.. ...-+.+-|+... ++..+ ..+......+|..-++-|+|||+|+....
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l-----~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDI-----AALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHH-----HHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4567899998432 1212233333211 12222 12345567788888899999999987653
No 99
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.89 E-value=0.22 Score=45.56 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=25.0
Q ss_pred cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 95 FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 95 sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
++|+++++...+. +..+++.-.+-|+|||++++.-
T Consensus 179 ~fD~Vvani~~~~-------------------------~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 179 KADVIVANILANP-------------------------LLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred CcCEEEEcCcHHH-------------------------HHHHHHHHHHhcCCCcEEEEEE
Confidence 7899998754333 2345555677899999999863
No 100
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=94.88 E-value=0.25 Score=49.12 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=60.8
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|+||++|.-|+.+.+.. + +.-+|+-.|+-.+=-..+= ..... .+ ..++ ..+
T Consensus 253 ~VLDlgaG~G~~t~~la~~~-----------~---~~~~v~avDi~~~~l~~~~-------~n~~~-~g--~~~v--~~~ 306 (444)
T PRK14902 253 TVLDACAAPGGKTTHIAELL-----------K---NTGKVVALDIHEHKLKLIE-------ENAKR-LG--LTNI--ETK 306 (444)
T ss_pred EEEEeCCCCCHHHHHHHHHh-----------C---CCCEEEEEeCCHHHHHHHH-------HHHHH-cC--CCeE--EEE
Confidence 69999999999998665432 1 1235666664321111111 11111 11 1121 112
Q ss_pred CCcccc--ccCCCCcccEEEecc---ccccccCCCCCCCC--CHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 83 PGSFYT--RLFPHNFLDFVYSSY---ALHWLSRMPKGQGN--ESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 83 pgSFy~--~l~P~~sv~~~~Ss~---alHWLS~vP~~~~n--~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
-+.+.. .-+| +++|.|++.. .+..+++.|+.... +..+. ...+--..+|+.=.+-|+|||+||...
T Consensus 307 ~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~-----~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 307 ALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIE-----SLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred eCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHH-----HHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 222221 1233 6789998742 34444554542221 11111 123334568888889999999998543
No 101
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.84 E-value=0.06 Score=49.31 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhccCceeEEEE
Q 045960 131 SDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 131 ~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
.++..+++.-.+=|+|||++++..
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE
Confidence 456778888888999999999865
No 102
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=94.78 E-value=0.082 Score=48.92 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=46.3
Q ss_pred cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHH
Q 045960 95 FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKD 174 (300)
Q Consensus 95 sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~ 174 (300)
++|+|+||==.+= .+.. .|+....+-.+.+..-++..+++.=++-|||||++.+... + +.+.+.+.-
T Consensus 115 ~fD~Ii~NPPyf~---~~~~-~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r--~-------erl~ei~~~ 181 (248)
T COG4123 115 SFDLIICNPPYFK---QGSR-LNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR--P-------ERLAEIIEL 181 (248)
T ss_pred ccCEEEeCCCCCC---Cccc-cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec--H-------HHHHHHHHH
Confidence 7788877521111 0011 1344555666667788899999999999999999877762 2 335566666
Q ss_pred HHHcC
Q 045960 175 MISEG 179 (300)
Q Consensus 175 mv~eG 179 (300)
|..-+
T Consensus 182 l~~~~ 186 (248)
T COG4123 182 LKSYN 186 (248)
T ss_pred HHhcC
Confidence 55544
No 103
>PHA03411 putative methyltransferase; Provisional
Probab=94.71 E-value=0.18 Score=47.39 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=63.9
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+||++|..++.+... .+..+|+..|+-. ++-.+.+.. .+++ ..+
T Consensus 67 rVLDLGcGsGilsl~la~r---------------~~~~~V~gVDisp-~al~~Ar~n--------------~~~v--~~v 114 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHR---------------CKPEKIVCVELNP-EFARIGKRL--------------LPEA--EWI 114 (279)
T ss_pred eEEEcCCCCCHHHHHHHHh---------------CCCCEEEEEECCH-HHHHHHHHh--------------CcCC--EEE
Confidence 7999999999766543221 0125677777532 222222110 0111 113
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHh---HH-H--HHHHHHHHHHHhhccCceeEEEEee
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQ---FE-S--DFSTFLKFRSEELKSQGRMVLTLLY 156 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q---~~-~--D~~~fL~~Ra~EL~~GG~~vl~~~g 156 (300)
-+++.. +.+..++|+|+|+-.++++.. ..-.+.++-+ +. + .+..||+..+.=|+|+|...+.+.|
T Consensus 115 ~~D~~e-~~~~~kFDlIIsNPPF~~l~~--------~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 115 TSDVFE-FESNEKFDVVISNPPFGKINT--------TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred ECchhh-hcccCCCcEEEEcCCccccCc--------hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence 344443 234578999999999999543 1112212111 01 1 1578999999999999977666543
Q ss_pred c
Q 045960 157 N 157 (300)
Q Consensus 157 ~ 157 (300)
+
T Consensus 186 ~ 186 (279)
T PHA03411 186 R 186 (279)
T ss_pred c
Confidence 3
No 104
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.56 E-value=0.1 Score=49.53 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhccCceeEEEEe
Q 045960 133 FSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 133 ~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
...+++.-.+-|+|||++++.++
T Consensus 242 ~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 242 VRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 45677777788999999998764
No 105
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.30 E-value=0.048 Score=50.86 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=33.6
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
++++|+|+++..-||+= .||..|++--.+-|++||.+.+.=
T Consensus 224 l~d~svDvaV~CLSLMg-----------------------tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 224 LEDESVDVAVFCLSLMG-----------------------TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred CccCcccEEEeeHhhhc-----------------------ccHHHHHHHHHHHhccCceEEEEe
Confidence 78999999886655542 368999999999999999987754
No 106
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=94.30 E-value=0.29 Score=48.68 Aligned_cols=61 Identities=8% Similarity=0.034 Sum_probs=39.3
Q ss_pred CCcccEEEe---ccccccccCCCCCCCC-CHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960 93 HNFLDFVYS---SYALHWLSRMPKGQGN-ESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN 157 (300)
Q Consensus 93 ~~sv~~~~S---s~alHWLS~vP~~~~n-~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~ 157 (300)
++++|.|+. .+.+..+.+-|+.... +++ -..+..+.....|..=++-|+|||+||......
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~----~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKE----DFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHH----HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 567899886 2456666665543221 121 112345556788988899999999998877543
No 107
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.27 E-value=0.015 Score=58.45 Aligned_cols=45 Identities=29% Similarity=0.309 Sum_probs=34.9
Q ss_pred cCCCCcccEEEeccccc-cccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960 90 LFPHNFLDFVYSSYALH-WLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY 156 (300)
Q Consensus 90 l~P~~sv~~~~Ss~alH-WLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g 156 (300)
-||++++|++||+-|+. |.+.- ..+|----+-|+|||.+|+.-.-
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~----------------------g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND----------------------GFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cCCccchhhhhcccccccchhcc----------------------cceeehhhhhhccCceEEecCCc
Confidence 38999999999999986 84441 22555567889999999998753
No 108
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=94.27 E-value=0.26 Score=48.73 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=66.9
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|+||+.|.-|+.+...+ + .-+|+..|.-.+=-..+-+ .... .+- . +-+..+
T Consensus 241 ~VLDlcag~G~kt~~la~~~-----------~----~~~v~a~D~~~~~l~~~~~-------n~~r-~g~--~-~~v~~~ 294 (426)
T TIGR00563 241 TILDACAAPGGKTTHILELA-----------P----QAQVVALDIHEHRLKRVYE-------NLKR-LGL--T-IKAETK 294 (426)
T ss_pred eEEEeCCCccHHHHHHHHHc-----------C----CCeEEEEeCCHHHHHHHHH-------HHHH-cCC--C-eEEEEe
Confidence 69999999999998665321 1 2456666652221111111 1111 111 1 222222
Q ss_pred CCcccc--ccCCCCcccEEEec---cccccccCCCCCCC--CCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 83 PGSFYT--RLFPHNFLDFVYSS---YALHWLSRMPKGQG--NESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 83 pgSFy~--~l~P~~sv~~~~Ss---~alHWLS~vP~~~~--n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
.+.-.+ ...+.+++|.|++- +++.-+.+.|+... ++..+. +..+.-..+|..=++-|+|||+||....
T Consensus 295 ~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~-----~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 295 DGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIA-----ELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred ccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHH-----HHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 232221 12367789999863 34444555565332 133332 2344557788888888999999998764
Q ss_pred ec
Q 045960 156 YN 157 (300)
Q Consensus 156 g~ 157 (300)
.-
T Consensus 370 s~ 371 (426)
T TIGR00563 370 SV 371 (426)
T ss_pred CC
Confidence 33
No 109
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.24 E-value=0.11 Score=52.68 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=64.9
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|+||++|..++.+... .|..+|+.-|.-. +.-.+.+ ..... .+-. .+ +..+
T Consensus 141 ~VLDlG~GsG~iai~la~~---------------~p~~~v~avDis~-~al~~A~------~N~~~-~~l~-~~--v~~~ 194 (506)
T PRK01544 141 NILELGTGSGCIAISLLCE---------------LPNANVIATDISL-DAIEVAK------SNAIK-YEVT-DR--IQII 194 (506)
T ss_pred EEEEccCchhHHHHHHHHH---------------CCCCeEEEEECCH-HHHHHHH------HHHHH-cCCc-cc--eeee
Confidence 6999999999888755431 1346788888621 1111111 11111 1100 11 2224
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHH------HHHH-hHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHK------AFLN-QFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~------ay~~-q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
-++++.. +|.+++|+++|+--....+..+.. +++|.+ .+.. .--..+..+++.-.+=|+|||.+++.+
T Consensus 195 ~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l---~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 195 HSNWFEN-IEKQKFDFIVSNPPYISHSEKSEM---AIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred ecchhhh-CcCCCccEEEECCCCCCchhhhhc---CchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 4566553 366789999997543333222211 111111 1100 112335778888888999999999875
No 110
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=93.90 E-value=0.19 Score=46.97 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhccCceeEEEEe
Q 045960 131 SDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 131 ~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
.+...+++.-.+-|+|||.+++.++
T Consensus 221 ~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 221 NILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEC
Confidence 3567888888888999999988884
No 111
>PRK00811 spermidine synthase; Provisional
Probab=93.75 E-value=0.36 Score=45.20 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=31.1
Q ss_pred CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
+.+++|++++-.+-+| .|. . ..| -..|++.-.+-|+|||.|+++.
T Consensus 147 ~~~~yDvIi~D~~dp~---~~~------~--~l~-------t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 147 TENSFDVIIVDSTDPV---GPA------E--GLF-------TKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CCCcccEEEECCCCCC---Cch------h--hhh-------HHHHHHHHHHhcCCCcEEEEeC
Confidence 5678999999877666 221 1 122 1466777778899999998764
No 112
>PRK07402 precorrin-6B methylase; Provisional
Probab=93.74 E-value=0.32 Score=42.54 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhccCceeEEEEe
Q 045960 133 FSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 133 ~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
+..+|+.-.+-|+|||++++...
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEee
Confidence 45667777777999999999874
No 113
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=93.70 E-value=0.24 Score=49.26 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=59.1
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|+||++|..++.+... .|..+|+..|.-. -. +......... .+. + +..+
T Consensus 254 rVLDLGcGSG~IaiaLA~~---------------~p~a~VtAVDiS~-----~A--Le~AreNa~~-~g~---r--V~fi 305 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALE---------------RPDAFVRASDISP-----PA--LETARKNAAD-LGA---R--VEFA 305 (423)
T ss_pred EEEEEeChhhHHHHHHHHh---------------CCCCEEEEEECCH-----HH--HHHHHHHHHH-cCC---c--EEEE
Confidence 6999999999988765421 1235666666411 00 0000111111 110 1 2224
Q ss_pred CCccccccCC-CCcccEEEeccccccccCCCCCCCC--CHHH----HHHHHH--hHHHHHHHHHHHHHHhhccCceeEEE
Q 045960 83 PGSFYTRLFP-HNFLDFVYSSYALHWLSRMPKGQGN--ESDV----HKAFLN--QFESDFSTFLKFRSEELKSQGRMVLT 153 (300)
Q Consensus 83 pgSFy~~l~P-~~sv~~~~Ss~alHWLS~vP~~~~n--~~~v----~~ay~~--q~~~D~~~fL~~Ra~EL~~GG~~vl~ 153 (300)
-+++.+..+| ..++|+++|+= .+ +|..-.. ++.+ ..|... .--..+.++++.-.+-|+|||.+++.
T Consensus 306 ~gDl~e~~l~~~~~FDLIVSNP--PY---I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 306 HGSWFDTDMPSEGKWDIIVSNP--PY---IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred EcchhccccccCCCccEEEECC--CC---CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 4566555454 35799999973 12 2211100 1111 011110 01122567777777889999998776
Q ss_pred E
Q 045960 154 L 154 (300)
Q Consensus 154 ~ 154 (300)
.
T Consensus 381 i 381 (423)
T PRK14966 381 H 381 (423)
T ss_pred E
Confidence 6
No 114
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=93.66 E-value=0.7 Score=42.02 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=66.6
Q ss_pred eeeeecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960 77 CFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY 156 (300)
Q Consensus 77 ~f~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g 156 (300)
.|+.|-+.+--+ +|+.|+|.|++..+|.= . +|-..-|+.-.+=|+|||++++.=-|
T Consensus 129 ~fvva~ge~l~~--l~d~s~DtVV~TlvLCS--v--------------------e~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 129 RFVVADGENLPQ--LADGSYDTVVCTLVLCS--V--------------------EDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEeechhcCcc--cccCCeeeEEEEEEEec--c--------------------CCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 577776655432 29999999999888764 2 23456677788899999999888766
Q ss_pred cCCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960 157 NDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS 223 (300)
Q Consensus 157 ~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~ 223 (300)
++.. +.+...|+.-++- ++. + .-+-+.=--|.-+.++++. |++.+.+.+..+
T Consensus 185 a~~y-----~~~n~i~q~v~ep-~~~---~-----~~dGC~ltrd~~e~Leda~-f~~~~~kr~~~~ 236 (252)
T KOG4300|consen 185 AGEY-----GFWNRILQQVAEP-LWH---L-----ESDGCVLTRDTGELLEDAE-FSIDSCKRFNFG 236 (252)
T ss_pred cccc-----hHHHHHHHHHhch-hhh---e-----eccceEEehhHHHHhhhcc-cccchhhcccCC
Confidence 6543 2344444432221 111 0 1122222346667777774 888777766544
No 115
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.58 E-value=0.54 Score=41.27 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhccCceeEEEE
Q 045960 133 FSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 133 ~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
...+|+.-.+-|+|||++++..
T Consensus 124 ~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 124 LKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred HHHHHHHHHHHcCCCcEEEEEe
Confidence 4556777778899999998755
No 116
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=93.33 E-value=0.8 Score=45.62 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=63.8
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|+||++|..|+.+...+ . ..-+|+-.|.-..=...+=+.+. . .+ ..++ ..+
T Consensus 253 ~VLDlgaG~G~kt~~la~~~----~----------~~~~V~avD~s~~~l~~~~~~~~-------~-~g--~~~v--~~~ 306 (445)
T PRK14904 253 TVLDLCAAPGGKSTFMAELM----Q----------NRGQITAVDRYPQKLEKIRSHAS-------A-LG--ITII--ETI 306 (445)
T ss_pred EEEEECCCCCHHHHHHHHHh----C----------CCcEEEEEECCHHHHHHHHHHHH-------H-hC--CCeE--EEE
Confidence 68999999999998554321 0 11356666643322222211111 1 11 1121 111
Q ss_pred CCccccccCCCCcccEEEe----ccccccccCCCCCCC--CCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960 83 PGSFYTRLFPHNFLDFVYS----SYALHWLSRMPKGQG--NESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY 156 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~S----s~alHWLS~vP~~~~--n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g 156 (300)
-+.. ..+.|++++|.|+. +..-+|- +-|+... ++..+. +..+....+|..=++-|+|||+|+.....
T Consensus 307 ~~Da-~~~~~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~~~~~~~~~-----~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 307 EGDA-RSFSPEEQPDAILLDAPCTGTGVLG-RRAELRWKLTPEKLA-----ELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred eCcc-cccccCCCCCEEEEcCCCCCcchhh-cCcchhhcCCHHHHH-----HHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 1222 12336778999983 3444443 2233211 122222 23445677899999999999999987643
Q ss_pred c
Q 045960 157 N 157 (300)
Q Consensus 157 ~ 157 (300)
-
T Consensus 380 ~ 380 (445)
T PRK14904 380 I 380 (445)
T ss_pred C
Confidence 3
No 117
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=92.71 E-value=0.15 Score=48.98 Aligned_cols=56 Identities=23% Similarity=0.314 Sum_probs=41.4
Q ss_pred cCCcccccc---C--CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 82 SPGSFYTRL---F--PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 82 vpgSFy~~l---~--P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
++-+|+.+| + ++-++|+|=|=+|+|+-=. . ..-...+|..-++-|+|||.|+-+++
T Consensus 178 ~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe-------t-----------ee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 178 AADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE-------T-----------EESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred EeccchhHHHHhccCCCCCcceeeeeeeEeeeec-------c-----------HHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 446777654 3 5556999999999997211 0 11246789999999999999999985
No 118
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=92.27 E-value=0.26 Score=45.80 Aligned_cols=81 Identities=26% Similarity=0.434 Sum_probs=57.7
Q ss_pred cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHH
Q 045960 95 FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKD 174 (300)
Q Consensus 95 sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~ 174 (300)
..|.+.|++||.=.++-+ ..+.+-|+.-+.=|||||.|++...-..+. +
T Consensus 158 ~~D~v~s~fcLE~a~~d~------------------~~y~~al~ni~~lLkpGG~Lil~~~l~~t~--Y----------- 206 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDL------------------DEYRRALRNISSLLKPGGHLILAGVLGSTY--Y----------- 206 (256)
T ss_dssp SEEEEEEESSHHHH-SSH------------------HHHHHHHHHHHTTEEEEEEEEEEEESS-SE--E-----------
T ss_pred chhhhhhhHHHHHHcCCH------------------HHHHHHHHHHHHHcCCCcEEEEEEEcCcee--E-----------
Confidence 599999999999988722 235677788899999999999987643321 1
Q ss_pred HHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960 175 MISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE 218 (300)
Q Consensus 175 mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e 218 (300)
| +-.- .+|...-+.+.+++.|+++| |.|...+
T Consensus 207 ~----------vG~~-~F~~l~l~ee~v~~al~~aG-~~i~~~~ 238 (256)
T PF01234_consen 207 M----------VGGH-KFPCLPLNEEFVREALEEAG-FDIEDLE 238 (256)
T ss_dssp E----------ETTE-EEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred E----------ECCE-ecccccCCHHHHHHHHHHcC-CEEEecc
Confidence 0 1112 47888889999999999999 9999988
No 119
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=92.25 E-value=0.42 Score=43.79 Aligned_cols=54 Identities=26% Similarity=0.284 Sum_probs=43.1
Q ss_pred CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
|++.+||-++|-.|++||=..-+...|| ++.+.+|+..-+.-|++|++-|+++-
T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~~P-----------~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNADKSLHVP-----------KKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCCccceEEEeeeeeeecccCccccCh-----------HHHHHHHhhhhhhhhccCceeEEEec
Confidence 8999999999999999995532221111 44578899999999999999999994
No 120
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=91.86 E-value=1.6 Score=43.26 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 129 FESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 129 ~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
..+....+|..=++-|||||+||...
T Consensus 359 l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 359 LAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 34556788999999999999998654
No 121
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=90.98 E-value=0.99 Score=41.63 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=53.3
Q ss_pred CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960 94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK 173 (300)
Q Consensus 94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~ 173 (300)
.++|+|.|.=.|+- ||. -..|+++=++=+||||.|++.-.-|.- ....+-
T Consensus 123 ~~FDvV~cmEVlEH---v~d-------------------p~~~~~~c~~lvkP~G~lf~STinrt~--------ka~~~~ 172 (243)
T COG2227 123 GQFDVVTCMEVLEH---VPD-------------------PESFLRACAKLVKPGGILFLSTINRTL--------KAYLLA 172 (243)
T ss_pred CCccEEEEhhHHHc---cCC-------------------HHHHHHHHHHHcCCCcEEEEeccccCH--------HHHHHH
Confidence 78999998777776 664 245777789999999999988766532 111222
Q ss_pred HHHHcCCCchhhhccccCCCcc------cCCHHHHHHHHHhcCCeeEEEEE
Q 045960 174 DMISEGLAEESKVKSFEDFPIY------RASVDEVKQIVKKEGSFDIQEVE 218 (300)
Q Consensus 174 ~mv~eG~i~~e~~d~f~~~P~y------~~s~eE~~~~i~~~gsF~I~~~e 218 (300)
-+..| .+-.+ +|-- +-.++|+..++...| +++....
T Consensus 173 i~~ae------~vl~~--vP~gTH~~~k~irp~El~~~~~~~~-~~~~~~~ 214 (243)
T COG2227 173 IIGAE------YVLRI--VPKGTHDYRKFIKPAELIRWLLGAN-LKIIDRK 214 (243)
T ss_pred HHHHH------HHHHh--cCCcchhHHHhcCHHHHHHhcccCC-ceEEeec
Confidence 11122 12222 2222 346788888888876 5555443
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.66 E-value=0.78 Score=44.03 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.2
Q ss_pred EEEeeCCCCCcccHHHHH
Q 045960 3 RFADLGCSSGPNALLPTW 20 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~ 20 (300)
+|.|+||++|.+++.+..
T Consensus 83 ~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 83 RVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred EEEEEeCCccHHHHHHHH
Confidence 799999999999886643
No 123
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.63 E-value=1 Score=41.80 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=29.1
Q ss_pred CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960 93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT 153 (300)
Q Consensus 93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~ 153 (300)
.+++|++++..+-++ -|. . ..| -..|++.-++-|+|||++++.
T Consensus 143 ~~~yDvIi~D~~~~~---~~~-----~---~l~-------~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ENTFDVIIVDSTDPV---GPA-----E---TLF-------TKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCccEEEEeCCCCC---Ccc-----c---chh-------HHHHHHHHHHHhCCCcEEEEc
Confidence 468999998876554 121 0 112 146666777889999999987
No 124
>PRK03612 spermidine synthase; Provisional
Probab=89.93 E-value=1.2 Score=45.37 Aligned_cols=79 Identities=14% Similarity=0.250 Sum_probs=45.8
Q ss_pred CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960 93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL 172 (300)
Q Consensus 93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al 172 (300)
++++|++++...-+| .|. ..+.|. ..|++.-.+-|+|||+++++.. .+... .+.+..+.
T Consensus 371 ~~~fDvIi~D~~~~~---~~~-------~~~L~t-------~ef~~~~~~~L~pgG~lv~~~~-~~~~~---~~~~~~i~ 429 (521)
T PRK03612 371 AEKFDVIIVDLPDPS---NPA-------LGKLYS-------VEFYRLLKRRLAPDGLLVVQST-SPYFA---PKAFWSIE 429 (521)
T ss_pred CCCCCEEEEeCCCCC---Ccc-------hhccch-------HHHHHHHHHhcCCCeEEEEecC-Ccccc---hHHHHHHH
Confidence 357899999865544 221 112222 3455555678999999988752 11111 16677777
Q ss_pred HHHHHcCCCchhhhccccCCCcc
Q 045960 173 KDMISEGLAEESKVKSFEDFPIY 195 (300)
Q Consensus 173 ~~mv~eG~i~~e~~d~f~~~P~y 195 (300)
+.|.+.|. .-.. -.. ++|.|
T Consensus 430 ~~l~~~gf-~v~~-~~~-~vps~ 449 (521)
T PRK03612 430 ATLEAAGL-ATTP-YHV-NVPSF 449 (521)
T ss_pred HHHHHcCC-EEEE-EEe-CCCCc
Confidence 77777776 2221 223 46777
No 125
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=89.65 E-value=1.1 Score=38.29 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=15.7
Q ss_pred EEEeeCCCCCcccHHHHH
Q 045960 3 RFADLGCSSGPNALLPTW 20 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~ 20 (300)
+|.|+||+.|..|..+++
T Consensus 16 ~vLEiG~G~G~lt~~l~~ 33 (169)
T smart00650 16 TVLEIGPGKGALTEELLE 33 (169)
T ss_pred EEEEECCCccHHHHHHHh
Confidence 689999999999987755
No 126
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=89.48 E-value=3 Score=38.56 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 129 FESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 129 ~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
..+....+|+.=++-|+|||+||....
T Consensus 174 l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 174 ISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 344556789988899999999986653
No 127
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=88.95 E-value=1.5 Score=37.75 Aligned_cols=115 Identities=19% Similarity=0.139 Sum_probs=54.8
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
.+++|+|||.|+-|-.+++.. .+.-.|+--|+...+=-.....+. .+++-..
T Consensus 25 ~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~~~~~~~~~i~--------------~d~~~~~ 76 (181)
T PF01728_consen 25 FTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPMDPLQNVSFIQ--------------GDITNPE 76 (181)
T ss_dssp EEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSSTGS-TTEEBTT--------------GGGEEEE
T ss_pred cEEEEcCCcccceeeeeeecc--------------cccceEEEEeccccccccceeeee--------------cccchhh
Confidence 689999999999887655443 234788888887661001111111 1122111
Q ss_pred cCCccccccCCC--CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960 82 SPGSFYTRLFPH--NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY 156 (300)
Q Consensus 82 vpgSFy~~l~P~--~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g 156 (300)
.-. -....++. ..+|++.|=.+.++..+ +. .+.....+. ...-|..=-+-|+|||.||+-+..
T Consensus 77 ~~~-~i~~~~~~~~~~~dlv~~D~~~~~~g~-~~--~d~~~~~~l--------~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 77 NIK-DIRKLLPESGEKFDLVLSDMAPNVSGD-RN--IDEFISIRL--------ILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp HSH-HGGGSHGTTTCSESEEEE-------SS-HH--SSHHHHHHH--------HHHHHHHHHHHHCTTEEEEEEESS
T ss_pred HHH-hhhhhccccccCcceeccccccCCCCc-hh--hHHHHHHHH--------HHHHHHHHHhhhcCCCEEEEEecc
Confidence 111 22333333 78999998876665332 00 001111111 122222333558999999998764
No 128
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=88.40 E-value=3.1 Score=39.64 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=62.2
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|+|+||+-|+-++.+.+ ..|+.++.+.|. |+-.|= .-...+..+.. .+. ..+
T Consensus 161 ~vlDlGCG~Gvlg~~la~---------------~~p~~~vtmvDv---n~~Av~----~ar~Nl~~N~~---~~~--~v~ 213 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAK---------------KSPQAKLTLVDV---NARAVE----SARKNLAANGV---ENT--EVW 213 (300)
T ss_pred cEEEeCCCccHHHHHHHH---------------hCCCCeEEEEec---CHHHHH----HHHHhHHHcCC---Ccc--EEE
Confidence 699999999987774432 235788888873 333332 22222222111 221 123
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
-.+=|..+.. ++|+++||==+|==.+ .+..+ -..++..=++-|++||.|.+..-
T Consensus 214 ~s~~~~~v~~--kfd~IisNPPfh~G~~---------v~~~~--------~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 214 ASNLYEPVEG--KFDLIISNPPFHAGKA---------VVHSL--------AQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred Eecccccccc--cccEEEeCCCccCCcc---------hhHHH--------HHHHHHHHHHhhccCCEEEEEEc
Confidence 3455677766 8999999865552111 11111 13566667788999999988775
No 129
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=88.38 E-value=0.54 Score=41.70 Aligned_cols=152 Identities=16% Similarity=0.232 Sum_probs=80.8
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee-
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA- 81 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~- 81 (300)
.+.|+||+.|...+.... ..|+..++--|.-.+=....-+.+. +. ...|+.+.-
T Consensus 20 l~lEIG~G~G~~l~~~A~---------------~~Pd~n~iGiE~~~~~v~~a~~~~~-------~~---~l~Nv~~~~~ 74 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAK---------------RNPDINFIGIEIRKKRVAKALRKAE-------KR---GLKNVRFLRG 74 (195)
T ss_dssp EEEEET-TTSHHHHHHHH---------------HSTTSEEEEEES-HHHHHHHHHHHH-------HH---TTSSEEEEES
T ss_pred eEEEecCCCCHHHHHHHH---------------HCCCCCEEEEecchHHHHHHHHHHH-------hh---cccceEEEEc
Confidence 578999999987653321 1356777777654332222222111 11 125655554
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHH--HHHHHHHHHHhhccCceeEEEEeecCC
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESD--FSTFLKFRSEELKSQGRMVLTLLYNDN 159 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D--~~~fL~~Ra~EL~~GG~~vl~~~g~~~ 159 (300)
=...+...++|++||+-++-++-==|-.+ ++.++- -..||..-++-|+|||.+.+.. ++
T Consensus 75 da~~~l~~~~~~~~v~~i~i~FPDPWpK~----------------rH~krRl~~~~fl~~~~~~L~~gG~l~~~T---D~ 135 (195)
T PF02390_consen 75 DARELLRRLFPPGSVDRIYINFPDPWPKK----------------RHHKRRLVNPEFLELLARVLKPGGELYFAT---DV 135 (195)
T ss_dssp -CTTHHHHHSTTTSEEEEEEES-----SG----------------GGGGGSTTSHHHHHHHHHHEEEEEEEEEEE---S-
T ss_pred cHHHHHhhcccCCchheEEEeCCCCCccc----------------chhhhhcCCchHHHHHHHHcCCCCEEEEEe---CC
Confidence 45666889999999999999888777443 111111 1457888899999999886554 21
Q ss_pred CCCCCchHHHHHHHHHHHc-CCCchhh--hccccCCC---cccCCHHHHHH
Q 045960 160 FHATPGEPMLMVLKDMISE-GLAEESK--VKSFEDFP---IYRASVDEVKQ 204 (300)
Q Consensus 160 ~~~~~~~~l~~al~~mv~e-G~i~~e~--~d~f~~~P---~y~~s~eE~~~ 204 (300)
. +....++..+... +...... -+-. +-| .+..|.-|-+.
T Consensus 136 ~-----~y~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~T~yE~k~ 180 (195)
T PF02390_consen 136 E-----EYAEWMLEQFEESHPGFENIEESDDLH-ESPFDDDYIPTKYERKW 180 (195)
T ss_dssp H-----HHHHHHHHHHHHHSTTEEEE-TESSGG-CSCCCTTCCSSHHHHHH
T ss_pred H-----HHHHHHHHHHHhcCcCeEEcccCcccc-cCCCCCCCCCCHHHHHH
Confidence 1 4455666666552 3333221 1112 344 45666555543
No 130
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=87.92 E-value=1.8 Score=41.16 Aligned_cols=62 Identities=18% Similarity=0.124 Sum_probs=36.5
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN 157 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~ 157 (300)
-+.+-+--++++++|.++++--..--+..+. . ....-...+|+.-++-|+|||++++.+...
T Consensus 236 ~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~-----~--------~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 236 RGDATKLPLSSESVDAIATDPPYGRSTTAAG-----D--------GLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred ecchhcCCcccCCCCEEEECCCCcCcccccC-----C--------chHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 3444432344678999998643322111110 0 011224677888888999999999988644
No 131
>PRK04457 spermidine synthase; Provisional
Probab=87.71 E-value=1.8 Score=40.06 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhccCceeEEEEeecC
Q 045960 134 STFLKFRSEELKSQGRMVLTLLYND 158 (300)
Q Consensus 134 ~~fL~~Ra~EL~~GG~~vl~~~g~~ 158 (300)
..|++.-.+-|+|||++++++.++.
T Consensus 157 ~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 157 QPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 4667777777999999999876543
No 132
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=86.81 E-value=1.5 Score=37.96 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=59.7
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
.+|.++||+.|--+|.+... . ..-.|+++|+|. +...+..+-+.-... .. .++-+..
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~--------~-------~~~~Vv~TD~~~-----~l~~l~~Ni~~N~~~-~~--~~v~v~~ 103 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKL--------F-------GAARVVLTDYNE-----VLELLRRNIELNGSL-LD--GRVSVRP 103 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S------HHHHHHHHHHTT-----------EEEE
T ss_pred ceEEEECCccchhHHHHHhc--------c-------CCceEEEeccch-----hhHHHHHHHHhcccc-cc--ccccCcE
Confidence 47999999999888765443 0 135789999875 333333332111000 00 1222222
Q ss_pred --cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960 82 --SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND 158 (300)
Q Consensus 82 --vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~ 158 (300)
.+.......++.+++|+++.+=++.+=+ .+..+++.-.+=|+++|.+++...-|.
T Consensus 104 L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~----------------------~~~~L~~tl~~ll~~~~~vl~~~~~R~ 160 (173)
T PF10294_consen 104 LDWGDELDSDLLEPHSFDVILASDVLYDEE----------------------LFEPLVRTLKRLLKPNGKVLLAYKRRR 160 (173)
T ss_dssp --TTS-HHHHHHS-SSBSEEEEES--S-GG----------------------GHHHHHHHHHHHBTT-TTEEEEEE-S-
T ss_pred EEecCcccccccccccCCEEEEecccchHH----------------------HHHHHHHHHHHHhCCCCEEEEEeCEec
Confidence 3333444556778999999999888722 256667777788899999777776664
No 133
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=86.31 E-value=0.75 Score=43.41 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=41.4
Q ss_pred cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960 90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161 (300)
Q Consensus 90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~ 161 (300)
.+++.|+|...|.+.+||||. +.-=.+.|+--.+.|+|||.+.+..-+.....
T Consensus 98 p~~~~s~d~~lsiavihhlsT-------------------~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~~ 150 (293)
T KOG1331|consen 98 PFREESFDAALSIAVIHHLST-------------------RERRERALEELLRVLRPGGNALVYVWALEQHQ 150 (293)
T ss_pred CCCCCccccchhhhhhhhhhh-------------------HHHHHHHHHHHHHHhcCCCceEEEEehhhccC
Confidence 478999999999999999987 11123455667789999999999988775544
No 134
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=84.35 E-value=4.9 Score=36.03 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhccCceeEE
Q 045960 130 ESDFSTFLKFRSEELKSQGRMVL 152 (300)
Q Consensus 130 ~~D~~~fL~~Ra~EL~~GG~~vl 152 (300)
..|+..-|..+.++||+|-++|.
T Consensus 134 ~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 134 DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp -HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CHHHHHHHHHHHhcCCCCCEEEE
Confidence 44677778889999999987653
No 135
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=84.02 E-value=1.6 Score=39.19 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=13.5
Q ss_pred eEEEeeCCCCCcccHHHH
Q 045960 2 IRFADLGCSSGPNALLPT 19 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~ 19 (300)
-+|.|+||++|.+|-++-
T Consensus 74 ~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp -EEEEES-TTSHHHHHHH
T ss_pred CEEEEecCCCcHHHHHHH
Confidence 379999999999987543
No 136
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=83.59 E-value=2.8 Score=40.58 Aligned_cols=102 Identities=18% Similarity=0.290 Sum_probs=66.1
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|.||++|--|+..... |. -.|+-- |++.+.. ...++...++ +. --+-.+
T Consensus 63 ~VlDVGcGtGILS~F~akA------------GA----~~V~aV-----e~S~ia~----~a~~iv~~N~--~~-~ii~vi 114 (346)
T KOG1499|consen 63 TVLDVGCGTGILSMFAAKA------------GA----RKVYAV-----EASSIAD----FARKIVKDNG--LE-DVITVI 114 (346)
T ss_pred EEEEcCCCccHHHHHHHHh------------Cc----ceEEEE-----echHHHH----HHHHHHHhcC--cc-ceEEEe
Confidence 6899999999888865432 21 122221 2333331 1122222222 12 244556
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeE
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMV 151 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~v 151 (300)
.|.=-+=.+|-..||++.|-|-=+||-. +.=+.+.|-+|-+=|+|||.++
T Consensus 115 ~gkvEdi~LP~eKVDiIvSEWMGy~Ll~-------------------EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 115 KGKVEDIELPVEKVDIIVSEWMGYFLLY-------------------ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ecceEEEecCccceeEEeehhhhHHHHH-------------------hhhhhhhhhhhhhccCCCceEc
Confidence 6666777889899999999988888654 4447889999999999999985
No 137
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=80.28 E-value=8.7 Score=36.00 Aligned_cols=123 Identities=20% Similarity=0.286 Sum_probs=71.6
Q ss_pred CeEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHH-HHh-hhcCCC-CCce
Q 045960 1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYE-RLR-TEKGHE-FGSC 77 (300)
Q Consensus 1 ~~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~-~~~-~~~~~~-~~~~ 77 (300)
.++|=--|||+|-=.-.+.-.+.+.... ..+..++|+-+|+ |=..|=+.-...++ .-. ...... ..+|
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~------~~~~~~~I~AtDI---d~~~L~~A~~G~Y~~~~~~~~~~~~~~~ry 167 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGK------LAGFRVKILATDI---DLSVLEKARAGIYPSRELLRGLPPELLRRY 167 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhcc------ccCCceEEEEEEC---CHHHHHHHhcCCCChhHhhccCCHHHHhhh
Confidence 3678889999997666555444444432 1234699999995 33444433222222 000 000000 1357
Q ss_pred eeeecCCccc-------------cccC----CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHH
Q 045960 78 FVAASPGSFY-------------TRLF----PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFR 140 (300)
Q Consensus 78 f~~~vpgSFy-------------~~l~----P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~R 140 (300)
|.-+.+|+|- ..|+ ..+-+|++||=+.|=.+.+ . .-.+.|+.=
T Consensus 168 F~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~-----------------~---~q~~il~~f 227 (268)
T COG1352 168 FERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDE-----------------E---TQERILRRF 227 (268)
T ss_pred EeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCH-----------------H---HHHHHHHHH
Confidence 7766666441 1122 3455899999888888766 1 124556667
Q ss_pred HHhhccCceeEE
Q 045960 141 SEELKSQGRMVL 152 (300)
Q Consensus 141 a~EL~~GG~~vl 152 (300)
+.-|+|||.|++
T Consensus 228 ~~~L~~gG~Lfl 239 (268)
T COG1352 228 ADSLKPGGLLFL 239 (268)
T ss_pred HHHhCCCCEEEE
Confidence 889999999865
No 138
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=80.20 E-value=3 Score=33.97 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=32.8
Q ss_pred ccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 96 LDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 96 v~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
+|++.+.+...|+ -...-...+.+|++.-++-|+|||+|||.-
T Consensus 2 yDvilclSVtkWI----------------HLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 2 YDVILCLSVTKWI----------------HLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp EEEEEEES-HHHH----------------HHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred ccEEEEEEeeEEE----------------EecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 5888888888882 123345568999999999999999999986
No 139
>PLN02366 spermidine synthase
Probab=80.17 E-value=7.2 Score=37.18 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=39.6
Q ss_pred CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHH
Q 045960 92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMV 171 (300)
Q Consensus 92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~a 171 (300)
|++.+|++++-.+-+| -|. ...|. ..|++.-.+-|+|||.|+.+... . .. ..+.+..+
T Consensus 162 ~~~~yDvIi~D~~dp~---~~~--------~~L~t-------~ef~~~~~~~L~pgGvlv~q~~s-~--~~-~~~~~~~i 219 (308)
T PLN02366 162 PEGTYDAIIVDSSDPV---GPA--------QELFE-------KPFFESVARALRPGGVVCTQAES-M--WL-HMDLIEDL 219 (308)
T ss_pred cCCCCCEEEEcCCCCC---Cch--------hhhhH-------HHHHHHHHHhcCCCcEEEECcCC-c--cc-chHHHHHH
Confidence 5678999998766555 121 11221 45666777889999999776421 1 10 01556666
Q ss_pred HHHHHHcC
Q 045960 172 LKDMISEG 179 (300)
Q Consensus 172 l~~mv~eG 179 (300)
.+.|.+..
T Consensus 220 ~~tl~~~F 227 (308)
T PLN02366 220 IAICRETF 227 (308)
T ss_pred HHHHHHHC
Confidence 66665554
No 140
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=80.05 E-value=23 Score=34.99 Aligned_cols=27 Identities=7% Similarity=0.018 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 128 QFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 128 q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
+..+++..++..=.+=|+|||.+++..
T Consensus 313 ~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 313 GACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 345677778777778899999987544
No 141
>PHA03412 putative methyltransferase; Provisional
Probab=79.44 E-value=1.1 Score=41.30 Aligned_cols=57 Identities=16% Similarity=0.007 Sum_probs=34.1
Q ss_pred eEEEeeCCCCCcccHHHHHHHHH--------------HHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhh
Q 045960 2 IRFADLGCSSGPNALLPTWEAID--------------SLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSF 62 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~--------------~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~ 62 (300)
.+|+|+||++|.-++.+...+.. +++... . ..+.+.+...|+-..+++.-|..+-.+
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar--~--n~~~~~~~~~D~~~~~~~~~FDlIIsN 121 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK--R--IVPEATWINADALTTEFDTLFDMAISN 121 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH--h--hccCCEEEEcchhcccccCCccEEEEC
Confidence 48999999999998877654321 111111 1 123578888887655555445554433
No 142
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=79.27 E-value=4.6 Score=41.11 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=66.7
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
.+.|+||+.|...+.... ..|+..++--|.-. +.+-+.+... ......|+.+..-
T Consensus 350 ~~lEIG~G~G~~~~~~A~---------------~~p~~~~iGiE~~~---~~~~~~~~~~-------~~~~l~N~~~~~~ 404 (506)
T PRK01544 350 VFLEIGFGMGEHFINQAK---------------MNPDALFIGVEVYL---NGVANVLKLA-------GEQNITNFLLFPN 404 (506)
T ss_pred eEEEECCCchHHHHHHHH---------------hCCCCCEEEEEeeH---HHHHHHHHHH-------HHcCCCeEEEEcC
Confidence 578999999987663321 23455555555433 2333322211 1112356655433
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHH--HHHHHHHHHHhhccCceeEEEE
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESD--FSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D--~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
--.+..+.||++|||-+|-++.=-|=.+-- .++- -..||+.-++-|+|||.+.+..
T Consensus 405 ~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh----------------~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 405 NLDLILNDLPNNSLDGIYILFPDPWIKNKQ----------------KKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CHHHHHHhcCcccccEEEEECCCCCCCCCC----------------ccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 334467889999999999999988944310 0111 1357777888999999987543
No 143
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=78.80 E-value=2.1 Score=38.98 Aligned_cols=94 Identities=22% Similarity=0.394 Sum_probs=59.1
Q ss_pred CceeeeecCCccccccCCC-CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960 75 GSCFVAASPGSFYTRLFPH-NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT 153 (300)
Q Consensus 75 ~~~f~~~vpgSFy~~l~P~-~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~ 153 (300)
.++|..|.- ..-|. +..|++|.-||+-.|.+ .|+..||+-=.+.|+|||.+|+=
T Consensus 106 ~~~~~~gLQ-----~f~P~~~~YDlIW~QW~lghLTD--------------------~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 106 GEFYCVGLQ-----DFTPEEGKYDLIWIQWCLGHLTD--------------------EDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EEEEES-GG-----G----TT-EEEEEEES-GGGS-H--------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEecCHh-----hccCCCCcEeEEEehHhhccCCH--------------------HHHHHHHHHHHHhCcCCcEEEEE
Confidence 456666643 33465 68999999999999877 68999999888899999988763
Q ss_pred EeecCCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960 154 LLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE 218 (300)
Q Consensus 154 ~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e 218 (300)
= |... .|.-.=++-|+= -.||.+.++.+++++| ++|.+-+
T Consensus 161 E----N~~~---------------~~~~~~D~~DsS-----vTRs~~~~~~lF~~AG-l~~v~~~ 200 (218)
T PF05891_consen 161 E----NVSS---------------SGFDEFDEEDSS-----VTRSDEHFRELFKQAG-LRLVKEE 200 (218)
T ss_dssp E----EEES---------------SSEEEEETTTTE-----EEEEHHHHHHHHHHCT--EEEEEE
T ss_pred e----cCCC---------------CCCcccCCccCe-----eecCHHHHHHHHHHcC-CEEEEec
Confidence 1 1110 110001112332 5789999999999999 7766554
No 144
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=78.52 E-value=12 Score=39.78 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 129 FESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 129 ~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
..+|+...+..-.+-|+|||.+++..
T Consensus 631 ~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 631 VQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 35677778887788899999987764
No 145
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=78.12 E-value=11 Score=36.28 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=60.1
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
.+|+||||++|.=+-++++.+.. . + ..+..+=-|+-..==.... ..+. ...++.+=+.+
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~----~----~---~~~~Y~plDIS~~~L~~a~-------~~L~---~~~~p~l~v~~ 136 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALER----Q----K---KSVDYYALDVSRSELQRTL-------AELP---LGNFSHVRCAG 136 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHh----c----C---CCceEEEEECCHHHHHHHH-------Hhhh---hccCCCeEEEE
Confidence 37999999999888777766542 1 1 1255555554321111111 1111 02235677778
Q ss_pred cCCcccccc--CCCCcccEEEeccccccccCCCCCCCC-CHHHHHHHHHhHHHHHHHHHHHHHH-hhccCceeEEEEeec
Q 045960 82 SPGSFYTRL--FPHNFLDFVYSSYALHWLSRMPKGQGN-ESDVHKAFLNQFESDFSTFLKFRSE-ELKSQGRMVLTLLYN 157 (300)
Q Consensus 82 vpgSFy~~l--~P~~sv~~~~Ss~alHWLS~vP~~~~n-~~~v~~ay~~q~~~D~~~fL~~Ra~-EL~~GG~~vl~~~g~ 157 (300)
+-|.|..-+ +|+... .-..-.+-||= ..+.| ++.-. ..||+.-++ -|.|||.|++-+=+.
T Consensus 137 l~gdy~~~l~~l~~~~~--~~~~r~~~flG---SsiGNf~~~ea-----------~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 137 LLGTYDDGLAWLKRPEN--RSRPTTILWLG---SSIGNFSRPEA-----------AAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred EEecHHHHHhhcccccc--cCCccEEEEeC---ccccCCCHHHH-----------HHHHHHHHHhhCCCCCEEEEecCCC
Confidence 888886542 222100 00001111210 01123 22222 456666666 899999999877444
Q ss_pred C
Q 045960 158 D 158 (300)
Q Consensus 158 ~ 158 (300)
.
T Consensus 201 k 201 (319)
T TIGR03439 201 K 201 (319)
T ss_pred C
Confidence 3
No 146
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=77.51 E-value=3.5 Score=39.02 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHHHHc
Q 045960 133 FSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISE 178 (300)
Q Consensus 133 ~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~mv~e 178 (300)
+..++..-.+-|+|||.+++...+++..- -+.+.|+..-.+
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~~~~~~~-----~lv~~~m~s~~~ 304 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELVERKEHS-----YLVRIWMISLKD 304 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEecccccCc-----HHHHHHHHhchh
Confidence 56778888899999999999999886542 244555543333
No 147
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=74.98 E-value=3.3 Score=39.16 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=32.9
Q ss_pred CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCC
Q 045960 93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDN 159 (300)
Q Consensus 93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~ 159 (300)
.+.+|+|+|-+.|..++. .+-...++.-++-|+|||.| ++|..+
T Consensus 221 ~~~fD~I~cRNvliyF~~--------------------~~~~~vl~~l~~~L~pgG~L---~lG~sE 264 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDK--------------------TTQERILRRFVPLLKPDGLL---FAGHSE 264 (287)
T ss_pred CCCcceeeHhhHHhcCCH--------------------HHHHHHHHHHHHHhCCCcEE---EEeCcc
Confidence 578999999999988654 23466777788999999976 445543
No 148
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=74.73 E-value=39 Score=30.82 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=48.9
Q ss_pred CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960 94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK 173 (300)
Q Consensus 94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~ 173 (300)
+.+|+|+=.++|+=| | ++....| .+.-++=|+|||++++.++-.+..
T Consensus 123 ~~fD~VyDra~~~Al---p------p~~R~~Y-----------~~~l~~lL~pgg~llll~~~~~~~------------- 169 (226)
T PRK13256 123 PVFDIWYDRGAYIAL---P------NDLRTNY-----------AKMMLEVCSNNTQILLLVMEHDKK------------- 169 (226)
T ss_pred CCcCeeeeehhHhcC---C------HHHHHHH-----------HHHHHHHhCCCcEEEEEEEecCCC-------------
Confidence 468999988888873 4 3444444 344556699999999998633210
Q ss_pred HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960 174 DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219 (300)
Q Consensus 174 ~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~ 219 (300)
- .-|=+.=+.+|+++..... |+|+.++.
T Consensus 170 ---------------~-~GPPf~v~~~e~~~lf~~~--~~i~~l~~ 197 (226)
T PRK13256 170 ---------------S-QTPPYSVTQAELIKNFSAK--IKFELIDS 197 (226)
T ss_pred ---------------C-CCCCCcCCHHHHHHhccCC--ceEEEeee
Confidence 1 2233445678999988633 77777664
No 149
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=72.37 E-value=29 Score=32.57 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=62.1
Q ss_pred eeeeecCCccccccCCC---CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960 77 CFVAASPGSFYTRLFPH---NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT 153 (300)
Q Consensus 77 ~f~~~vpgSFy~~l~P~---~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~ 153 (300)
-=.+.+.|+|-+=--++ ++.|.|.+.+=+.= ++++-.+|....+=||||| ..++
T Consensus 144 ~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT----------------------A~Ni~~Yi~tI~~lLkpgG-~WIN 200 (270)
T PF07942_consen 144 SNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT----------------------AENIIEYIETIEHLLKPGG-YWIN 200 (270)
T ss_pred CceeEecCccEEecCCcccCCcccEEEEEEEeec----------------------hHHHHHHHHHHHHHhccCC-EEEe
Confidence 34556778887665555 68998888754432 5568888999999999999 4455
Q ss_pred EeecCCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960 154 LLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219 (300)
Q Consensus 154 ~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~ 219 (300)
++=..-.. .++ + +. +-..-..|.||++.+++.-| |++++-+.
T Consensus 201 ~GPLlyh~-----------~~~---~-~~--------~~~sveLs~eEi~~l~~~~G-F~~~~~~~ 242 (270)
T PF07942_consen 201 FGPLLYHF-----------EPM---S-IP--------NEMSVELSLEEIKELIEKLG-FEIEKEES 242 (270)
T ss_pred cCCccccC-----------CCC---C-CC--------CCcccCCCHHHHHHHHHHCC-CEEEEEEE
Confidence 53111000 000 0 00 11114567999999999998 99988776
No 150
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=70.71 E-value=6.7 Score=36.33 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=29.9
Q ss_pred EEEeeCCCCCcccHHHHH------------HHHHHHHHHHHhcCCCCCceeEEecCCCCCch
Q 045960 3 RFADLGCSSGPNALLPTW------------EAIDSLDKICHRLNRKPPVLHSFLNDLPRSDF 52 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~------------~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDF 52 (300)
+|.|+||++|.-|..+.. ..++.+++.. . .+.++++..|...-++
T Consensus 45 ~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~---~--~~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 45 NVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETF---A--EDNLTIIEGDALKVDL 101 (272)
T ss_pred eEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhh---c--cCceEEEEChhhcCCH
Confidence 699999999999988876 3444444332 1 1357777777655444
No 151
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=68.13 E-value=3.1 Score=31.98 Aligned_cols=44 Identities=30% Similarity=0.449 Sum_probs=25.9
Q ss_pred EEeccccccccCCCCCCCCCHHHHHHHHHh---HHHHHHHHHHHHHHh
Q 045960 99 VYSSYALHWLSRMPKGQGNESDVHKAFLNQ---FESDFSTFLKFRSEE 143 (300)
Q Consensus 99 ~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q---~~~D~~~fL~~Ra~E 143 (300)
.|++--|+||+++| -+.|..+|.+.-.++ -++-+..||++-+++
T Consensus 4 ~f~~kvlt~L~~~P-LlkN~~AVq~~~e~~~~~nqktL~vFl~ALa~~ 50 (81)
T PF09119_consen 4 KFKSKVLTWLGKIP-LLKNTNAVQKYVENQRVENQKTLQVFLEALAER 50 (81)
T ss_dssp -BTTB-EEEEE-----TT-HHHHHHHHHCS--S-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCc-ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 57788899999999 455666666644443 345578899888775
No 152
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.11 E-value=10 Score=34.27 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=48.9
Q ss_pred EEEeeCCCCCcccHHHHH------------HHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhc
Q 045960 3 RFADLGCSSGPNALLPTW------------EAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEK 70 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~------------~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~ 70 (300)
+|.++||+||.+|-.+-+ .+.+.-++.....|-. .+.|.+.|-- + .+..
T Consensus 75 ~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~--nV~v~~gDG~--------~-------G~~~-- 135 (209)
T COG2518 75 RVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE--NVTVRHGDGS--------K-------GWPE-- 135 (209)
T ss_pred eEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC--ceEEEECCcc--------c-------CCCC--
Confidence 689999999999875432 2222233333334432 3888888831 1 1111
Q ss_pred CCCCCceeeee----cCCccccccCCCCcccEEEe
Q 045960 71 GHEFGSCFVAA----SPGSFYTRLFPHNFLDFVYS 101 (300)
Q Consensus 71 ~~~~~~~f~~~----vpgSFy~~l~P~~sv~~~~S 101 (300)
...+..|++.| +|.++.+||-|.+-+=+.+-
T Consensus 136 ~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence 12245677765 88999999999887665544
No 153
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=66.04 E-value=22 Score=31.83 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=24.2
Q ss_pred HHHHHH--HhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960 121 VHKAFL--NQFESDFSTFLKFRSEELKSQGRMVLTLLYND 158 (300)
Q Consensus 121 v~~ay~--~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~ 158 (300)
...+|+ +--++=..++|..--.=|.|-|.+.+...-++
T Consensus 133 i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 133 IASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred HHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 344554 33344466777777777888888887776443
No 154
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=65.02 E-value=3.4 Score=36.93 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.9
Q ss_pred EEEeeCCCCCcccHHH
Q 045960 3 RFADLGCSSGPNALLP 18 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~ 18 (300)
+|+|+||++|.-++..
T Consensus 48 ~V~DlG~GTG~La~ga 63 (198)
T COG2263 48 TVLDLGAGTGILAIGA 63 (198)
T ss_pred EEEEcCCCcCHHHHHH
Confidence 6999999999988754
No 155
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=63.07 E-value=4 Score=37.24 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=15.2
Q ss_pred EEEeeCCCCCcccHHHHH
Q 045960 3 RFADLGCSSGPNALLPTW 20 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~ 20 (300)
+++|+|||+|.-|..+++
T Consensus 78 ~vlDiG~gtG~~t~~l~~ 95 (228)
T TIGR00478 78 IVLDVGSSTGGFTDCALQ 95 (228)
T ss_pred EEEEcccCCCHHHHHHHH
Confidence 699999999998886554
No 156
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=59.89 E-value=48 Score=33.55 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=63.3
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|++||.|.=|..+.+.+ + .+=.|+-||.-.+=...|-+.+... | ..++-+...
T Consensus 116 ~VLD~CAAPGgKTt~la~~l-----------~---~~g~lvA~D~~~~R~~~L~~nl~r~--------G--~~nv~v~~~ 171 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALM-----------N---NQGAIVANEYSASRVKVLHANISRC--------G--VSNVALTHF 171 (470)
T ss_pred EEEEeCCCccHHHHHHHHHc-----------C---CCCEEEEEeCCHHHHHHHHHHHHHc--------C--CCeEEEEeC
Confidence 69999999999998664422 1 1125677776555555554444321 1 123333222
Q ss_pred CCccccccCCCCcccEEE----eccccccccCCCCCCCC--CHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 83 PGSFYTRLFPHNFLDFVY----SSYALHWLSRMPKGQGN--ESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~----Ss~alHWLS~vP~~~~n--~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
-+.=+...+| .++|.|. ||-.=.|- +-|+.... +..+.+ ..+--..+|..=++-|||||+||=..
T Consensus 172 D~~~~~~~~~-~~fD~ILvDaPCSG~G~~r-k~p~~~~~~s~~~v~~-----l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 172 DGRVFGAALP-ETFDAILLDAPCSGEGTVR-KDPDALKNWSPESNLE-----IAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred chhhhhhhch-hhcCeEEEcCCCCCCcccc-cCHHHhhhCCHHHHHH-----HHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 2211222333 3467666 44444442 22322221 222222 23334668888889999999986543
No 157
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=58.35 E-value=5 Score=38.21 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=30.4
Q ss_pred CccccccCCCC-cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 84 GSFYTRLFPHN-FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 84 gSFy~~l~P~~-sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
..|+..-.|.+ .+|+++.|-= -+ + +..+..--.+.|||||++++.-
T Consensus 217 ~~~~~~~~~~~~~~DvIVANIL----A~----------v-----------l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 217 KGFLLLEVPENGPFDVIVANIL----AE----------V-----------LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred ccccchhhcccCcccEEEehhh----HH----------H-----------HHHHHHHHHHHcCCCceEEEEe
Confidence 45666666775 7899888752 11 1 2334444677899999998865
No 158
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=57.55 E-value=18 Score=35.19 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=66.9
Q ss_pred eeecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960 79 VAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND 158 (300)
Q Consensus 79 ~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~ 158 (300)
+-=|.|-+++- .|..- ++|-=|+||=+. .+|...||+.=++-|+|||.+++.=.-.+
T Consensus 223 V~~v~gdmfq~-~P~~d--aI~mkWiLhdwt--------------------DedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 223 VEHVAGDMFQD-TPKGD--AIWMKWILHDWT--------------------DEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred cceeccccccc-CCCcC--eEEEEeecccCC--------------------hHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 33477899999 89887 999999998433 36899999999999999999987643222
Q ss_pred CCCCC----Cc-hHHHHHHHHHHHc-CCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960 159 NFHAT----PG-EPMLMVLKDMISE-GLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF 220 (300)
Q Consensus 159 ~~~~~----~~-~~l~~al~~mv~e-G~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~ 220 (300)
.+... +. ....+.++-...+ | -.++.+|++..+.++| |.+-.+-..
T Consensus 280 ~e~~~dd~~s~v~~~~d~lm~~~~~~G---------------kert~~e~q~l~~~~g-F~~~~~~~~ 331 (342)
T KOG3178|consen 280 EEDKFDDIDSSVTRDMDLLMLTQTSGG---------------KERTLKEFQALLPEEG-FPVCMVALT 331 (342)
T ss_pred CCCCccccccceeehhHHHHHHHhccc---------------eeccHHHHHhcchhhc-CceeEEEec
Confidence 21111 11 1111122211112 2 2467889999999998 777655544
No 159
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=55.40 E-value=12 Score=33.40 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=27.9
Q ss_pred cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960 90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL 152 (300)
Q Consensus 90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl 152 (300)
-.|.+.+|+|+|-+.|-.+.. +.-.+.|+.-++-|+|||.|++
T Consensus 131 ~~~~~~fD~I~CRNVlIYF~~--------------------~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 131 DPPFGRFDLIFCRNVLIYFDP--------------------ETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp ------EEEEEE-SSGGGS-H--------------------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred CcccCCccEEEecCEEEEeCH--------------------HHHHHHHHHHHHHcCCCCEEEE
Confidence 345677999999999998654 1125667778899999999865
No 160
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=55.11 E-value=12 Score=26.06 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHcCCCchhhhc
Q 045960 166 EPMLMVLKDMISEGLAEESKVK 187 (300)
Q Consensus 166 ~~l~~al~~mv~eG~i~~e~~d 187 (300)
..|.++|+||+.+|.|+++-..
T Consensus 13 ~aL~dtLDeli~~~~I~p~La~ 34 (49)
T PF02268_consen 13 IALTDTLDELIQEGKITPQLAM 34 (49)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHH
Confidence 6799999999999999987543
No 161
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=54.54 E-value=30 Score=32.48 Aligned_cols=90 Identities=17% Similarity=0.257 Sum_probs=45.5
Q ss_pred EEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHHHHc
Q 045960 99 VYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISE 178 (300)
Q Consensus 99 ~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~mv~e 178 (300)
+.-...|||+.. ..|-...+..=...|.||..|+++-...+.. + +.. ..+.++..+
T Consensus 154 vll~~vLh~v~D-------------------~~dp~~iv~~l~d~lapGS~L~ish~t~d~~-p---~~~-~~~~~~~~~ 209 (267)
T PF04672_consen 154 VLLVAVLHFVPD-------------------DDDPAGIVARLRDALAPGSYLAISHATDDGA-P---ERA-EALEAVYAQ 209 (267)
T ss_dssp EEECT-GGGS-C-------------------GCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS-H---HHH-HHHHHHHHH
T ss_pred eeeeeeeccCCC-------------------ccCHHHHHHHHHHhCCCCceEEEEecCCCCC-H---HHH-HHHHHHHHc
Confidence 445668999644 1223334444457799999999998865321 1 111 233333333
Q ss_pred CCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec-ccC
Q 045960 179 GLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS-WLV 226 (300)
Q Consensus 179 G~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~-~~~ 226 (300)
+ ..|.+.||.+|+.+.+. | |++..=-+...+ |.+
T Consensus 210 ~-----------~~~~~~Rs~~ei~~~f~--g-~elvePGlv~~~~WrP 244 (267)
T PF04672_consen 210 A-----------GSPGRPRSREEIAAFFD--G-LELVEPGLVPVPRWRP 244 (267)
T ss_dssp C-----------CS----B-HHHHHHCCT--T-SEE-TT-SEEGGGSS-
T ss_pred C-----------CCCceecCHHHHHHHcC--C-CccCCCceecccccCC
Confidence 2 68999999999999986 4 666554444444 876
No 162
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=54.27 E-value=19 Score=32.97 Aligned_cols=19 Identities=11% Similarity=0.010 Sum_probs=16.5
Q ss_pred EEEeeCCCCCcccHHHHHH
Q 045960 3 RFADLGCSSGPNALLPTWE 21 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ 21 (300)
+|.|+||+.|.-|..+...
T Consensus 32 ~VLEIG~G~G~lt~~L~~~ 50 (258)
T PRK14896 32 PVLEIGPGKGALTDELAKR 50 (258)
T ss_pred eEEEEeCccCHHHHHHHHh
Confidence 6899999999999987763
No 163
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=53.71 E-value=2.1e+02 Score=27.46 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=40.3
Q ss_pred HHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcc--cCCHHHHHHHHHhcCCe
Q 045960 135 TFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIY--RASVDEVKQIVKKEGSF 212 (300)
Q Consensus 135 ~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y--~~s~eE~~~~i~~~gsF 212 (300)
+-|+.-+.-|.|||.||.+- ++- .|.. +.+..+|..-- + .-||- .||..|..++++.+| |
T Consensus 230 ~sl~gl~~al~pgG~lIyTg--QPw-HPQl-e~IAr~LtsHr-~------------g~~WvMRrRsq~EmD~Lv~~aG-F 291 (311)
T PF12147_consen 230 RSLAGLARALEPGGYLIYTG--QPW-HPQL-EMIARVLTSHR-D------------GKAWVMRRRSQAEMDQLVEAAG-F 291 (311)
T ss_pred HHHHHHHHHhCCCcEEEEcC--CCC-Ccch-HHHHHHHhccc-C------------CCceEEEecCHHHHHHHHHHcC-C
Confidence 34777888999999987664 321 1211 56666665310 1 23444 579999999999998 5
Q ss_pred e
Q 045960 213 D 213 (300)
Q Consensus 213 ~ 213 (300)
.
T Consensus 292 ~ 292 (311)
T PF12147_consen 292 E 292 (311)
T ss_pred c
Confidence 4
No 164
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=53.26 E-value=7.7 Score=36.80 Aligned_cols=97 Identities=21% Similarity=0.154 Sum_probs=51.8
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|+||+||--+|.... .|. -+|+-.| +|=.++-....+.. . ++-. .++.+. .
T Consensus 164 ~vLDvG~GSGILaiaA~k------------lGA----~~v~a~D---iDp~Av~~a~~N~~----~-N~~~-~~~~v~-~ 217 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAK------------LGA----KKVVAID---IDPLAVEAARENAE----L-NGVE-DRIEVS-L 217 (295)
T ss_dssp EEEEES-TTSHHHHHHHH------------TTB----SEEEEEE---SSCHHHHHHHHHHH----H-TT-T-TCEEES-C
T ss_pred EEEEeCCcHHHHHHHHHH------------cCC----CeEEEec---CCHHHHHHHHHHHH----H-cCCC-eeEEEE-E
Confidence 799999999987774321 232 2456666 34333332222111 1 1111 234332 2
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
.. -.+...+|++++|--.+= +........+-|+|||++++.-.
T Consensus 218 ~~-----~~~~~~~dlvvANI~~~v-------------------------L~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 218 SE-----DLVEGKFDLVVANILADV-------------------------LLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp TS-----CTCCS-EEEEEEES-HHH-------------------------HHHHHHHCHHHEEEEEEEEEEEE
T ss_pred ec-----ccccccCCEEEECCCHHH-------------------------HHHHHHHHHHhhCCCCEEEEccc
Confidence 22 234588999998864433 34445556778999999988653
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=49.52 E-value=24 Score=33.38 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=31.6
Q ss_pred EEEeeCCCCCcccHHHHHH------------HHHHHHHHHHhcCCCCCceeEEecCCCCCc
Q 045960 3 RFADLGCSSGPNALLPTWE------------AIDSLDKICHRLNRKPPVLHSFLNDLPRSD 51 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~------------ii~~i~~~~~~~~~~~~~~~v~~nDlP~ND 51 (300)
+|.|+||+.|.-|..++.. +++.+++.....+. .+.++++..|....|
T Consensus 39 ~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 39 TVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-ASKLEVIEGDALKTE 98 (294)
T ss_pred EEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCHhhhc
Confidence 6899999999999887753 45555554432221 235888888765443
No 166
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=47.71 E-value=14 Score=34.42 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=62.7
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|-.|++|.--+..+..+.+.-.+ .+..+++..|. |........+.-...... ....-...
T Consensus 49 ~VlDPacGsG~fL~~~~~~i~~~~~~--------~~~~~i~G~ei--~~~~~~la~~nl~l~~~~-------~~~~~i~~ 111 (311)
T PF02384_consen 49 SVLDPACGSGGFLVAAMEYIKEKRNK--------IKEINIYGIEI--DPEAVALAKLNLLLHGID-------NSNINIIQ 111 (311)
T ss_dssp EEEETT-TTSHHHHHHHHHHHTCHHH--------HCCEEEEEEES---HHHHHHHHHHHHHTTHH-------CBGCEEEE
T ss_pred eeechhhhHHHHHHHHHHhhcccccc--------cccceeEeecC--cHHHHHHHHhhhhhhccc-------cccccccc
Confidence 69999999998766666555443111 24588887776 222222211111111000 11111223
Q ss_pred CCccccccCC-CCcccEEEec--cccc-cccC-CCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 83 PGSFYTRLFP-HNFLDFVYSS--YALH-WLSR-MPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 83 pgSFy~~l~P-~~sv~~~~Ss--~alH-WLS~-vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
+-+|-..... ...+|+|+++ +... |-.. ......-... .......|+ .|+..=-+-|++||++.+.++
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY----FPPKSNAEY-AFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTC----SSSTTEHHH-HHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccCCCCcccccccccccccccccccc----CCCccchhh-hhHHHHHhhcccccceeEEec
Confidence 4455555555 6789999987 2333 4111 1110000000 000111223 377777899999999999886
No 167
>PF14904 FAM86: Family of unknown function
Probab=46.92 E-value=26 Score=28.08 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=26.6
Q ss_pred HHHHHHhhhhHHHhh--hChhHHHHHHHHHHHHh
Q 045960 247 TKHVRAVGESFLANL--FDDATVDEIHRRFATKV 278 (300)
Q Consensus 247 a~~iRA~~ep~l~~h--fge~i~delf~r~~~~~ 278 (300)
.++.|.+...++.++ .+.+..|+||+.|++.+
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~l 100 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEVL 100 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhC
Confidence 457889999999866 77899999999998753
No 168
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=46.60 E-value=70 Score=29.58 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=15.2
Q ss_pred EEEeeCCCCCcccHHHHHHH
Q 045960 3 RFADLGCSSGPNALLPTWEA 22 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~i 22 (300)
+|.+-|.+||.-|..+...+
T Consensus 43 ~VlEaGtGSG~lt~~l~r~v 62 (247)
T PF08704_consen 43 RVLEAGTGSGSLTHALARAV 62 (247)
T ss_dssp EEEEE--TTSHHHHHHHHHH
T ss_pred EEEEecCCcHHHHHHHHHHh
Confidence 78999999999999877655
No 169
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=45.19 E-value=11 Score=34.55 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhccCceeEEEEe
Q 045960 133 FSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 133 ~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
+..++..=.+=|+|||++++...
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 56777777888999999998763
No 170
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=44.14 E-value=19 Score=22.38 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.9
Q ss_pred HHHHHHHHcCCCchhhhcc
Q 045960 170 MVLKDMISEGLAEESKVKS 188 (300)
Q Consensus 170 ~al~~mv~eG~i~~e~~d~ 188 (300)
..|.+|-+.|.||++++..
T Consensus 6 ~~L~~l~~~G~IseeEy~~ 24 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQ 24 (31)
T ss_pred HHHHHHHHcCCCCHHHHHH
Confidence 4678899999999998754
No 171
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.99 E-value=15 Score=32.47 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHH
Q 045960 166 EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVD 200 (300)
Q Consensus 166 ~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~e 200 (300)
-.+.+++..||.+|+|..|++-+- |+=|-|||.+
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGss-n~YWsFps~~ 63 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSS-NYYWSFPSQA 63 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCe-eEEEecChHH
Confidence 568999999999999999999999 9889999754
No 172
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=43.91 E-value=1.5e+02 Score=26.61 Aligned_cols=91 Identities=24% Similarity=0.420 Sum_probs=54.2
Q ss_pred ecCCccccccCCCC--cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960 81 ASPGSFYTRLFPHN--FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND 158 (300)
Q Consensus 81 ~vpgSFy~~l~P~~--sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~ 158 (300)
-+-|.||. +=|.. .+|+++=-++|+= +| |+..+.|.+| -++=|+|||++++..+-.+
T Consensus 101 ~~~gDfF~-l~~~~~g~fD~iyDr~~l~A---lp------p~~R~~Ya~~-----------l~~ll~p~g~~lLi~l~~~ 159 (218)
T PF05724_consen 101 IYCGDFFE-LPPEDVGKFDLIYDRTFLCA---LP------PEMRERYAQQ-----------LASLLKPGGRGLLITLEYP 159 (218)
T ss_dssp EEES-TTT-GGGSCHHSEEEEEECSSTTT---S-------GGGHHHHHHH-----------HHHCEEEEEEEEEEEEES-
T ss_pred EEEccccc-CChhhcCCceEEEEeccccc---CC------HHHHHHHHHH-----------HHHHhCCCCcEEEEEEEcC
Confidence 34567776 22323 4899999999886 34 3445555544 4567999999555544222
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960 159 NFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV 222 (300)
Q Consensus 159 ~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~ 222 (300)
.. .. .=|=|.-+.+||++.+. . .|+|+.++..+.
T Consensus 160 ~~---------------------------~~-~GPPf~v~~~ev~~l~~-~-~f~i~~l~~~~~ 193 (218)
T PF05724_consen 160 QG---------------------------EM-EGPPFSVTEEEVRELFG-P-GFEIEELEEEDS 193 (218)
T ss_dssp CS---------------------------CS-SSSS----HHHHHHHHT-T-TEEEEEEEEEE-
T ss_pred Cc---------------------------CC-CCcCCCCCHHHHHHHhc-C-CcEEEEEecccc
Confidence 11 11 23445568899999998 4 499999998643
No 173
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=43.39 E-value=13 Score=35.08 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.5
Q ss_pred EEEeeCCCCCcccHHHHH
Q 045960 3 RFADLGCSSGPNALLPTW 20 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~ 20 (300)
+|.|+||++|..++.+.+
T Consensus 176 ~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 176 SMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred EEEEccCCCCHHHHHHHh
Confidence 699999999999887654
No 174
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=42.32 E-value=24 Score=27.09 Aligned_cols=41 Identities=12% Similarity=0.306 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHh
Q 045960 166 EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKK 208 (300)
Q Consensus 166 ~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~ 208 (300)
..+..+|+.|-..|.|+++|-|.. ..|.+.|+. ..+.+|+.
T Consensus 14 ~~V~~~Ld~ll~~G~is~~Ecd~I-r~p~~T~sq-qARrLLD~ 54 (81)
T cd08788 14 HHVDGALELLLTRGFFSSYDCDEI-RLPIFTPSQ-QARRLLDL 54 (81)
T ss_pred HHHHHHHHHHHHcCCccHhhcchh-hcCCCChHH-HHHHHHHH
Confidence 357789999999999999999999 999998864 56666653
No 175
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=41.10 E-value=15 Score=32.61 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=14.0
Q ss_pred EEEeeCCCCCcccHHHH
Q 045960 3 RFADLGCSSGPNALLPT 19 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~ 19 (300)
+|+|+||++|.-++.++
T Consensus 56 ~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 56 RCLDCFAGSGALGLEAL 72 (199)
T ss_pred EEEEcCCCccHHHHHHH
Confidence 79999999998877543
No 176
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=40.78 E-value=16 Score=30.15 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=16.5
Q ss_pred eEEEeeCCCCCcccHHHHH
Q 045960 2 IRFADLGCSSGPNALLPTW 20 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~ 20 (300)
.+|+|+||+.|.-|..+..
T Consensus 27 ~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 27 ITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CEEEEeCCChhHHHHHHHH
Confidence 5899999999999887665
No 177
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=40.17 E-value=13 Score=34.89 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=62.1
Q ss_pred EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960 3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS 82 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v 82 (300)
+|.|+||+||.-++.+.. ..|...|+..|+-.. .|.--.... ...+ ..+ +....
T Consensus 113 ~ilDlGTGSG~iai~la~---------------~~~~~~V~a~Dis~~-------Al~~A~~Na-~~~~--l~~-~~~~~ 166 (280)
T COG2890 113 RILDLGTGSGAIAIALAK---------------EGPDAEVIAVDISPD-------ALALARENA-ERNG--LVR-VLVVQ 166 (280)
T ss_pred cEEEecCChHHHHHHHHh---------------hCcCCeEEEEECCHH-------HHHHHHHHH-HHcC--Ccc-EEEEe
Confidence 589999999988775432 224467888884210 000000000 1111 112 22222
Q ss_pred CCccccccCCCCcccEEEeccccccccCCCCCCC-CCHHH------HHHHHH-hHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQG-NESDV------HKAFLN-QFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~-n~~~v------~~ay~~-q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
. +.+..+-. .+|+++||= -| +|.... ..+++ ...+.. .--....+|+..-.+-|+|||.+++..
T Consensus 167 ~-dlf~~~~~--~fDlIVsNP--PY---ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 167 S-DLFEPLRG--KFDLIVSNP--PY---IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred e-ecccccCC--ceeEEEeCC--CC---CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 2 66666655 799999873 12 333310 01111 111111 123346788888888899999988887
Q ss_pred e
Q 045960 155 L 155 (300)
Q Consensus 155 ~ 155 (300)
.
T Consensus 239 g 239 (280)
T COG2890 239 G 239 (280)
T ss_pred C
Confidence 4
No 178
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=39.80 E-value=58 Score=30.95 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHH
Q 045960 131 SDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDM 175 (300)
Q Consensus 131 ~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~m 175 (300)
.-+..+|..-.+-|+|||+|++.-.-.-+. ..++..+++.
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlED-----riVK~~f~~~ 252 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLED-----RIVKRFFREL 252 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH-----HHHHHHHHHh
Confidence 458889999999999999998876422111 4555656554
No 179
>PRK11524 putative methyltransferase; Provisional
Probab=39.64 E-value=56 Score=30.38 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhccCceeEEEE
Q 045960 133 FSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 133 ~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
+..+|..-.+=|||||.|++.+
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5677778888999999999864
No 180
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=38.54 E-value=13 Score=23.86 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=8.8
Q ss_pred CcccCCHHHHHHHHH
Q 045960 193 PIYRASVDEVKQIVK 207 (300)
Q Consensus 193 P~y~~s~eE~~~~i~ 207 (300)
|.+.||.+|++..+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 788999999988754
No 181
>PRK04148 hypothetical protein; Provisional
Probab=38.44 E-value=49 Score=27.79 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=25.6
Q ss_pred eEEEeeCCCCCc-ccHHHHH------------HHHHHHHHHHHhcCCCCCceeEEecCCCCCchH
Q 045960 2 IRFADLGCSSGP-NALLPTW------------EAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFN 53 (300)
Q Consensus 2 ~~iaD~Gcs~G~-Nsl~~~~------------~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn 53 (300)
.+|+|+||+.|. -+..+.+ ..++.+++. -++++..|+-..|+.
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLE 73 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHH
Confidence 469999999997 4443332 222222221 267788887766654
No 182
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=37.00 E-value=19 Score=31.78 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHcCCCchhhhccccCCCcccCCH
Q 045960 166 EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASV 199 (300)
Q Consensus 166 ~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~ 199 (300)
..+.+.|++||.+|+++-|+.-.- |+=|-|+|.
T Consensus 43 ~tVKd~lQqlVDDgvV~~EK~Gts-N~YWsF~s~ 75 (209)
T COG5124 43 MTVKDLLQQLVDDGVVSVEKCGTS-NIYWSFKSQ 75 (209)
T ss_pred HHHHHHHHHHhhcCceeeeeeccc-eeEEecchH
Confidence 568899999999999999999999 988888863
No 183
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=36.89 E-value=21 Score=32.54 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=15.1
Q ss_pred EEEeeCCCCCcccHHHHH
Q 045960 3 RFADLGCSSGPNALLPTW 20 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~ 20 (300)
+|.|+||+.|.-|..+.+
T Consensus 32 ~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 32 VVLEIGPGLGALTEPLLK 49 (253)
T ss_pred EEEEeCCCCCHHHHHHHH
Confidence 699999999998876654
No 184
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=36.10 E-value=52 Score=33.09 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=15.8
Q ss_pred eEEEeeCCCCCcccHHHHHHH
Q 045960 2 IRFADLGCSSGPNALLPTWEA 22 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~i 22 (300)
.+|.|+||++|+-+...++..
T Consensus 188 ~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTT
T ss_pred eEEEEeCCCccHHHHHHHHHH
Confidence 579999999999988776543
No 185
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=35.78 E-value=18 Score=33.56 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=56.3
Q ss_pred CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHH
Q 045960 92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMV 171 (300)
Q Consensus 92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~a 171 (300)
-+..+|+|.+.-.|.+|-. +..++-.-+.-|+|||.|....---+..
T Consensus 185 ~~er~DLi~AaDVl~YlG~----------------------Le~~~~~aa~~L~~gGlfaFSvE~l~~~----------- 231 (287)
T COG4976 185 TQERFDLIVAADVLPYLGA----------------------LEGLFAGAAGLLAPGGLFAFSVETLPDD----------- 231 (287)
T ss_pred cCCcccchhhhhHHHhhcc----------------------hhhHHHHHHHhcCCCceEEEEecccCCC-----------
Confidence 3445677666666666444 7888889999999999998876322211
Q ss_pred HHHHHHcCCCchhhhccccCCC--cccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960 172 LKDMISEGLAEESKVKSFEDFP--IYRASVDEVKQIVKKEGSFDIQEVETFNVS 223 (300)
Q Consensus 172 l~~mv~eG~i~~e~~d~f~~~P--~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~ 223 (300)
| .|.--| -|..+..=+++.++..| |.|..++-+.+.
T Consensus 232 -------~--------~f~l~ps~RyAH~~~YVr~~l~~~G-l~~i~~~~ttiR 269 (287)
T COG4976 232 -------G--------GFVLGPSQRYAHSESYVRALLAASG-LEVIAIEDTTIR 269 (287)
T ss_pred -------C--------CeecchhhhhccchHHHHHHHHhcC-ceEEEeecccch
Confidence 1 121122 36677888999999998 898888776555
No 186
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=35.00 E-value=19 Score=29.36 Aligned_cols=12 Identities=50% Similarity=1.016 Sum_probs=9.7
Q ss_pred eEEEeeCCCCCc
Q 045960 2 IRFADLGCSSGP 13 (300)
Q Consensus 2 ~~iaD~Gcs~G~ 13 (300)
...+|+||+.|-
T Consensus 60 ~~FVDlGCGNGL 71 (112)
T PF07757_consen 60 QGFVDLGCGNGL 71 (112)
T ss_pred CceEEccCCchH
Confidence 357899999884
No 187
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=34.78 E-value=26 Score=31.55 Aligned_cols=52 Identities=4% Similarity=0.152 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCC------chHHHHHHHHHHHcCCCchhhhcc
Q 045960 127 NQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATP------GEPMLMVLKDMISEGLAEESKVKS 188 (300)
Q Consensus 127 ~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~------~~~l~~al~~mv~eG~i~~e~~d~ 188 (300)
.|.+.++..-+. . +++||.+| +++...+ ...+.+|+++|++||+|....-.+
T Consensus 15 ~qi~~~L~~~I~--~-~~~~G~~L-------PsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G~G 72 (241)
T PRK10079 15 QEIAAKLEQELR--Q-HYRCGDYL-------PAEQQLAARYEVNRHTLRRAIDQLVEKGWVQRRQGVG 72 (241)
T ss_pred HHHHHHHHHHHh--c-ccCCCCcC-------CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCE
Confidence 466677777664 4 89999986 3322111 178999999999999998776544
No 188
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=34.43 E-value=23 Score=35.23 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.2
Q ss_pred EEEeeCCCCCcccHHHHH
Q 045960 3 RFADLGCSSGPNALLPTW 20 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~ 20 (300)
+|+|+||++|..|+.+..
T Consensus 300 ~VLDlgcGtG~~sl~la~ 317 (443)
T PRK13168 300 RVLDLFCGLGNFTLPLAR 317 (443)
T ss_pred EEEEEeccCCHHHHHHHH
Confidence 799999999998886643
No 189
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=33.40 E-value=60 Score=31.98 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=42.1
Q ss_pred CCcccccc--CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCC
Q 045960 83 PGSFYTRL--FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDN 159 (300)
Q Consensus 83 pgSFy~~l--~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~ 159 (300)
-+|+-+.| .|++++|.+.=+=.+-||+. .++....+.-.+-++|||+++.=-.+...
T Consensus 281 t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~--------------------~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 281 TDSIEEVLRRLPPGSFDRFVLSDHMDWMDP--------------------EQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred eccHHHHHHhCCCCCeeEEEecchhhhCCH--------------------HHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 34554433 48999999999999999765 23455566678889999999887777654
No 190
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=33.04 E-value=55 Score=22.97 Aligned_cols=40 Identities=18% Similarity=0.393 Sum_probs=25.4
Q ss_pred CcccHHHHHHHHHHHHHHHHh-cCCCCCceeEEecCCCCCch
Q 045960 12 GPNALLPTWEAIDSLDKICHR-LNRKPPVLHSFLNDLPRSDF 52 (300)
Q Consensus 12 G~Nsl~~~~~ii~~i~~~~~~-~~~~~~~~~v~~nDlP~NDF 52 (300)
|. |-.--..+++.|.+...+ .+.+...+.|+++|.|..+|
T Consensus 11 Gr-s~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~~~ 51 (60)
T PRK02289 11 GR-SQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEGTY 51 (60)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChhhe
Confidence 44 555555566665555433 35556679999999886554
No 191
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=32.58 E-value=51 Score=32.26 Aligned_cols=52 Identities=15% Similarity=0.043 Sum_probs=39.9
Q ss_pred cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
+-+-|-+..|+++++|++.+.-+...+++ ....++--.+.++|||+.++--.
T Consensus 165 ~~~~~~~~~fedn~fd~v~~ld~~~~~~~----------------------~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 165 VVADFGKMPFEDNTFDGVRFLEVVCHAPD----------------------LEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred ehhhhhcCCCCccccCcEEEEeecccCCc----------------------HHHHHHHHhcccCCCceEEeHHH
Confidence 66788899999999999999999988544 33333444556999999987643
No 192
>PRK13699 putative methylase; Provisional
Probab=32.48 E-value=71 Score=28.89 Aligned_cols=21 Identities=19% Similarity=-0.026 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhccCceeEEEE
Q 045960 134 STFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 134 ~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
..+++.-++-|||||.|++.+
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 466677778899999987644
No 193
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=31.88 E-value=25 Score=32.08 Aligned_cols=15 Identities=40% Similarity=0.902 Sum_probs=12.1
Q ss_pred eEEEeeCCCCCcccH
Q 045960 2 IRFADLGCSSGPNAL 16 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl 16 (300)
+.+||+||+=|+-.+
T Consensus 62 vefaDIGCGyGGLlv 76 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLM 76 (249)
T ss_pred ceEEeeccCccchhh
Confidence 568999999996544
No 194
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=31.56 E-value=24 Score=28.56 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.0
Q ss_pred EEEeeCCCCCcccHHHH
Q 045960 3 RFADLGCSSGPNALLPT 19 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~ 19 (300)
+|.|+||..|.-|+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 58999999998877553
No 195
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=31.54 E-value=5e+02 Score=25.30 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=33.0
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCc
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSD 51 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~ND 51 (300)
+.|.|||.+.| .-+-.+|+++.++. ..+|.+.|.--+.|...
T Consensus 112 vHIID~~i~~G----~QW~~LiqaLa~R~----~gpp~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 112 VHIIDFGIGFG----VQWPSLIQALASRP----GGPPSLRITGIGPPNSG 153 (374)
T ss_pred eEEEeccCCcc----hHHHHHHHHHhcCC----CCCCeEEEEeccCCCCC
Confidence 67999999999 46778888887642 34678999999997765
No 196
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=31.37 E-value=24 Score=34.30 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=15.5
Q ss_pred EEEeeCCCCCcccHHHHH
Q 045960 3 RFADLGCSSGPNALLPTW 20 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~ 20 (300)
+|+|+||++|..++.+.+
T Consensus 236 ~vLDL~cG~G~~~l~la~ 253 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAG 253 (374)
T ss_pred EEEEccCCccHHHHHHhh
Confidence 689999999999887763
No 197
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=31.04 E-value=26 Score=30.35 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.7
Q ss_pred EEEeeCCCCCcccHHHHHHH
Q 045960 3 RFADLGCSSGPNALLPTWEA 22 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~~i 22 (300)
+|.|.-|+.|+||+.+....
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~ 21 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF 21 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT
T ss_pred EEEEeccCcCHHHHHHHHhC
Confidence 68999999999999888753
No 198
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=30.40 E-value=54 Score=27.36 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHH
Q 045960 117 NESDVHKAFLNQFESDFSTFLKFRSE 142 (300)
Q Consensus 117 n~~~v~~ay~~q~~~D~~~fL~~Ra~ 142 (300)
||..+...|++||++||-..|+.|..
T Consensus 9 n~~k~i~~yS~eFe~~Fl~lLr~~hg 34 (127)
T PF10357_consen 9 NPGKFIDEYSEEFEKDFLRLLRRRHG 34 (127)
T ss_dssp -GGG-HHHHHHHHHHHHHHHHHHHTS
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 47789999999999999999998854
No 199
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=29.92 E-value=32 Score=30.15 Aligned_cols=18 Identities=17% Similarity=-0.040 Sum_probs=15.5
Q ss_pred EEEeeCCCCCcccHHHHH
Q 045960 3 RFADLGCSSGPNALLPTW 20 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~~ 20 (300)
++.|++|++|.-++.+++
T Consensus 52 ~vLDLfaGsG~lglea~s 69 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALS 69 (189)
T ss_pred EEEEecCCCcHHHHHHHh
Confidence 689999999998887665
No 200
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=29.79 E-value=1.1e+02 Score=20.60 Aligned_cols=44 Identities=11% Similarity=0.283 Sum_probs=29.8
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHh-cCCCCCceeEEecCCCCCchH
Q 045960 9 CSSGPNALLPTWEAIDSLDKICHR-LNRKPPVLHSFLNDLPRSDFN 53 (300)
Q Consensus 9 cs~G~Nsl~~~~~ii~~i~~~~~~-~~~~~~~~~v~~nDlP~NDFn 53 (300)
+..|+ |-.--.++.++|.+...+ .|.++..+.|.+++.|..||.
T Consensus 7 ~~~gr-t~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~~~ 51 (58)
T cd00491 7 ILEGR-TDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPKENWG 51 (58)
T ss_pred EcCCC-CHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCchhce
Confidence 34566 466666667666666443 455666799999998887763
No 201
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=29.50 E-value=53 Score=23.85 Aligned_cols=30 Identities=27% Similarity=0.716 Sum_probs=24.1
Q ss_pred ccccCCCcccCCHHHHHHHHH----hcCCeeEEEEE
Q 045960 187 KSFEDFPIYRASVDEVKQIVK----KEGSFDIQEVE 218 (300)
Q Consensus 187 d~f~~~P~y~~s~eE~~~~i~----~~gsF~I~~~e 218 (300)
.+| -+|+|..|.||-..+-+ ..| |.|.|+.
T Consensus 25 ~sf-EVPV~A~SLeeA~e~AE~~Y~~aG-f~VtRiR 58 (63)
T PHA00457 25 QSF-EVPVYAKSLEEATELAEWQYVPAG-FVVTRIR 58 (63)
T ss_pred ceE-EeeeecccHHHHHHHHHHhhhccC-cEEEEec
Confidence 578 89999999999887766 345 8888764
No 202
>smart00400 ZnF_CHCC zinc finger.
Probab=29.14 E-value=45 Score=23.08 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=15.5
Q ss_pred EEeeCCCCCcccHHHHHHH
Q 045960 4 FADLGCSSGPNALLPTWEA 22 (300)
Q Consensus 4 iaD~Gcs~G~Nsl~~~~~i 22 (300)
.=++||+.|+|.|-++..+
T Consensus 24 ~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 24 FHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred EEEeCCCCCCCHHHHHHHH
Confidence 3579999999998887765
No 203
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=28.62 E-value=2e+02 Score=26.31 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=34.8
Q ss_pred cccccC---CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCce-----eEEEEe
Q 045960 86 FYTRLF---PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGR-----MVLTLL 155 (300)
Q Consensus 86 Fy~~l~---P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~-----~vl~~~ 155 (300)
|.+|=+ +++.+|+|.+|-.|.+ ||+ |... -.-|+.-.+=|+|+|. |++.++
T Consensus 92 Fm~rplp~~~~e~FdvIs~SLVLNf---VP~----p~~R------------G~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 92 FMERPLPKNESEKFDVISLSLVLNF---VPD----PKQR------------GEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred cccCCCCCCcccceeEEEEEEEEee---CCC----HHHH------------HHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 444444 4778999999999999 775 2222 2334444456889999 888775
No 204
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=28.40 E-value=69 Score=29.76 Aligned_cols=81 Identities=20% Similarity=0.173 Sum_probs=40.4
Q ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960 2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA 81 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~ 81 (300)
-+|.|+||+.|.-+ ..+.++-. ...+++.-| ++.....+.+.|-...... .. ..
T Consensus 35 ~~vLD~GsGpGta~-wAa~~~~~-------------~~~~~~~vd-~s~~~~~l~~~l~~~~~~~--------~~---~~ 88 (274)
T PF09243_consen 35 RSVLDFGSGPGTAL-WAAREVWP-------------SLKEYTCVD-RSPEMLELAKRLLRAGPNN--------RN---AE 88 (274)
T ss_pred ceEEEecCChHHHH-HHHHHHhc-------------Cceeeeeec-CCHHHHHHHHHHHhccccc--------cc---ch
Confidence 37999999998633 22222211 113445555 3445555544443211100 00 01
Q ss_pred cCCccccccCCCCcccEEEeccccccc
Q 045960 82 SPGSFYTRLFPHNFLDFVYSSYALHWL 108 (300)
Q Consensus 82 vpgSFy~~l~P~~sv~~~~Ss~alHWL 108 (300)
....++....+-..-|+++++++|-=|
T Consensus 89 ~~~~~~~~~~~~~~~DLvi~s~~L~EL 115 (274)
T PF09243_consen 89 WRRVLYRDFLPFPPDDLVIASYVLNEL 115 (274)
T ss_pred hhhhhhcccccCCCCcEEEEehhhhcC
Confidence 123444444443344999999998753
No 205
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=27.68 E-value=1.1e+02 Score=28.52 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=45.4
Q ss_pred CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960 84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT 163 (300)
Q Consensus 84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~ 163 (300)
|..++-.++. .+|.+|- ++|+ |- +.|..-++.|+|||.+++-.+.-
T Consensus 153 ~Dv~~~~~~~-~vDav~L--------Dmp~----PW---------------~~le~~~~~Lkpgg~~~~y~P~v------ 198 (256)
T COG2519 153 GDVREGIDEE-DVDAVFL--------DLPD----PW---------------NVLEHVSDALKPGGVVVVYSPTV------ 198 (256)
T ss_pred cccccccccc-ccCEEEE--------cCCC----hH---------------HHHHHHHHHhCCCcEEEEEcCCH------
Confidence 6677777777 7887763 4665 33 34555789999999998877433
Q ss_pred CchHHHHHHHHHHHcCCCchhhhcc
Q 045960 164 PGEPMLMVLKDMISEGLAEESKVKS 188 (300)
Q Consensus 164 ~~~~l~~al~~mv~eG~i~~e~~d~ 188 (300)
+.+...+..|-+.|.+..+.++.
T Consensus 199 --eQv~kt~~~l~~~g~~~ie~~E~ 221 (256)
T COG2519 199 --EQVEKTVEALRERGFVDIEAVET 221 (256)
T ss_pred --HHHHHHHHHHHhcCccchhhhee
Confidence 45666666666667666554443
No 206
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=27.21 E-value=55 Score=26.47 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHcCCCchhhh
Q 045960 166 EPMLMVLKDMISEGLAEESKV 186 (300)
Q Consensus 166 ~~l~~al~~mv~eG~i~~e~~ 186 (300)
..|.++|+||+.+|.|+++-.
T Consensus 14 ~~L~~tLDe~v~~g~itp~la 34 (109)
T KOG3463|consen 14 NALQKTLDELVSDGVITPSLA 34 (109)
T ss_pred HHHHHHHHHHHHcCCCCHHHH
Confidence 679999999999999998754
No 207
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=26.86 E-value=33 Score=31.74 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=10.3
Q ss_pred EEEeeCCCCCccc
Q 045960 3 RFADLGCSSGPNA 15 (300)
Q Consensus 3 ~iaD~Gcs~G~Ns 15 (300)
-|.|+||++|--+
T Consensus 53 ~iLDIGCGsGLSg 65 (270)
T KOG1541|consen 53 LILDIGCGSGLSG 65 (270)
T ss_pred EEEEeccCCCcch
Confidence 3889999999643
No 208
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=25.46 E-value=66 Score=23.06 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=22.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhccCce
Q 045960 123 KAFLNQFESDFSTFLKFRSEELKSQGR 149 (300)
Q Consensus 123 ~ay~~q~~~D~~~fL~~Ra~EL~~GG~ 149 (300)
+.+++-|..||..++...+++||.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 346667888999999999999998775
No 209
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.36 E-value=30 Score=30.27 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=37.7
Q ss_pred eecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960 80 AASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL 155 (300)
Q Consensus 80 ~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~ 155 (300)
--|-++-..+.|-+||+|++... |-|.+.. ......+|+.=.+=|||||.+-+.++
T Consensus 32 dlvc~As~e~~F~dns~d~iyae---HvlEHlt-----------------~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 32 DLVCRASNESMFEDNSVDAIYAE---HVLEHLT-----------------YDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred chhhhhhhhccCCCcchHHHHHH---HHHHHHh-----------------HHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 33556666777888888886544 3333211 13356777778888999999999886
No 210
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=25.05 E-value=1.4e+02 Score=22.00 Aligned_cols=43 Identities=35% Similarity=0.383 Sum_probs=30.9
Q ss_pred CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCC
Q 045960 94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDN 159 (300)
Q Consensus 94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~ 159 (300)
..+|++.+...+||.. ....+....+-|+|||.+++.......
T Consensus 118 ~~~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 118 ASFDLVISLLVLHLLP-----------------------PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred CceeEEeeeeehhcCC-----------------------HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4799996666666643 244556677779999999998876554
No 211
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=24.84 E-value=93 Score=28.46 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhccCceeEEEE
Q 045960 134 STFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 134 ~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
..|++...+-|+|||.++++.
T Consensus 171 ~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 171 REFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhhcCCCcEEEEEc
Confidence 456666777788888887777
No 212
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=24.62 E-value=46 Score=22.32 Aligned_cols=16 Identities=19% Similarity=0.578 Sum_probs=13.8
Q ss_pred CCcccCCHHHHHHHHH
Q 045960 192 FPIYRASVDEVKQIVK 207 (300)
Q Consensus 192 ~P~y~~s~eE~~~~i~ 207 (300)
+|.+.||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6899999999998764
No 213
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=24.51 E-value=42 Score=33.06 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=15.1
Q ss_pred EEEeeCCCCCcccHHHH
Q 045960 3 RFADLGCSSGPNALLPT 19 (300)
Q Consensus 3 ~iaD~Gcs~G~Nsl~~~ 19 (300)
+|+|+||++|..|+.+.
T Consensus 295 ~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLA 311 (431)
T ss_pred EEEEcCCCcCHHHHHHH
Confidence 69999999999998765
No 214
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=23.30 E-value=1.6e+02 Score=30.45 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHHHHcCCCchhhh--ccccC---CCcccC----CHHHHHH
Q 045960 134 STFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKV--KSFED---FPIYRA----SVDEVKQ 204 (300)
Q Consensus 134 ~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~--d~f~~---~P~y~~----s~eE~~~ 204 (300)
.++++...+-++.||+.++-.++-+-+.. +--+|++|..+|+|++--+ |.| . --+|.. =-.|++.
T Consensus 395 ~~L~~vi~~t~~rGGKvLIP~fAVGR~QE-----vM~VLee~mr~g~ipe~PVYlDGM-I~EatAIhtaYPEyL~~~lr~ 468 (637)
T COG1782 395 KELIKVINDTLKRGGKVLIPVFAVGRSQE-----VMIVLEEAMRKGLIPEVPVYLDGM-IWEATAIHTAYPEYLNKELRE 468 (637)
T ss_pred HHHHHHHHHHHhcCCeEEEEeeeccccce-----ehhHHHHHHhcCCCCCCceeeeee-eeehhhhhhcCHHhhhHHHHH
Confidence 56677788999999999887764433322 4479999999999995332 333 2 112222 2356666
Q ss_pred HHHhcCC--eeEEEEEEE
Q 045960 205 IVKKEGS--FDIQEVETF 220 (300)
Q Consensus 205 ~i~~~gs--F~I~~~e~~ 220 (300)
.|-..|. |.-+..+..
T Consensus 469 ~I~~~g~NPF~se~f~~V 486 (637)
T COG1782 469 RIFHEGENPFLSEIFKRV 486 (637)
T ss_pred HHhcCCCCCccccceeec
Confidence 6655553 655444433
No 215
>PRK01099 rpoK DNA-directed RNA polymerase subunit K; Provisional
Probab=23.14 E-value=1.7e+02 Score=21.26 Aligned_cols=44 Identities=7% Similarity=0.240 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHHHHcCCCchh
Q 045960 133 FSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEES 184 (300)
Q Consensus 133 ~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e 184 (300)
+...+..||++|.-|..-.+... ++. +.+.-|++|+ ++|.|+-+
T Consensus 12 ~a~i~akRArQl~~Ga~~lv~~~--~~~-----kPv~iAl~Ei-~~gkI~~~ 55 (62)
T PRK01099 12 RARIIGARALQISMGAPVLIDIP--EST-----DPLDIAEEEF-KRGVLPIT 55 (62)
T ss_pred HHHHHHHHHHHHHcCCCceecCC--CCC-----CHHHHHHHHH-HcCCCCeE
Confidence 56778889999999987655442 111 4578899998 77877643
No 216
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=22.89 E-value=50 Score=32.27 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.0
Q ss_pred eEEEeeCCCCCcccHHHH
Q 045960 2 IRFADLGCSSGPNALLPT 19 (300)
Q Consensus 2 ~~iaD~Gcs~G~Nsl~~~ 19 (300)
.+++|+|||.|+-|-.++
T Consensus 213 ~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred CEEEEeCCCCcHHHHHHH
Confidence 378999999999986555
No 217
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=22.08 E-value=2.6e+02 Score=20.67 Aligned_cols=46 Identities=13% Similarity=0.299 Sum_probs=29.3
Q ss_pred eCCCCCcccHHHHHHHHHHHHHHHH-hcCCCCCceeEEecCCCCCch
Q 045960 7 LGCSSGPNALLPTWEAIDSLDKICH-RLNRKPPVLHSFLNDLPRSDF 52 (300)
Q Consensus 7 ~Gcs~G~Nsl~~~~~ii~~i~~~~~-~~~~~~~~~~v~~nDlP~NDF 52 (300)
.=|..|..+-..=.++++.|.+... ..|.++..+.|+++|.|-.|+
T Consensus 6 Ik~~~g~~~~~~K~~la~~vT~~~~~~lg~~~~~i~Viieev~~~~w 52 (69)
T COG1942 6 IKLFEGRLDEEQKAELAAEVTEVTVETLGKDPSAIHVIIEEVPPENW 52 (69)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEecChhhe
Confidence 3355576766644455555544422 246677789999999887765
No 218
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=21.67 E-value=1.4e+02 Score=20.84 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhccCc
Q 045960 122 HKAFLNQFESDFSTFLKFRSEELKSQG 148 (300)
Q Consensus 122 ~~ay~~q~~~D~~~fL~~Ra~EL~~GG 148 (300)
.|.|-+.|++|-...|.+|.+-++..|
T Consensus 22 mkrycrafrqdrdallear~kl~~r~~ 48 (54)
T PF13260_consen 22 MKRYCRAFRQDRDALLEARNKLFRRSG 48 (54)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 477899999999999999999877654
No 219
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=21.57 E-value=96 Score=28.22 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=15.0
Q ss_pred cCCHHHHHHHHHhcCCeeEEEE
Q 045960 196 RASVDEVKQIVKKEGSFDIQEV 217 (300)
Q Consensus 196 ~~s~eE~~~~i~~~gsF~I~~~ 217 (300)
..++.-+.+.++..| |+++--
T Consensus 183 ri~~a~V~a~veaaG-Fkl~ae 203 (238)
T COG4798 183 RIDPAVVIAEVEAAG-FKLEAE 203 (238)
T ss_pred ccChHHHHHHHHhhc-ceeeee
Confidence 345667888899898 776543
No 220
>PF10789 Phage_RpbA: Phage RNA polymerase binding, RpbA; InterPro: IPR019725 Upon infection, the RpbA encoded phage protein binds to the ADP-ribosylated core RNA polymerase and modulates function to preferentially bind T4 promoters. This is a non-essential protein to the phage life cycle.
Probab=21.17 E-value=1.7e+02 Score=23.80 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=37.4
Q ss_pred cccCCCCCCCC-----CHHHHHHHHHhHHHH----HHHHH-HHHHHhhccCceeEEEEeecCCCCCCCc---hHHHHHH
Q 045960 107 WLSRMPKGQGN-----ESDVHKAFLNQFESD----FSTFL-KFRSEELKSQGRMVLTLLYNDNFHATPG---EPMLMVL 172 (300)
Q Consensus 107 WLS~vP~~~~n-----~~~v~~ay~~q~~~D----~~~fL-~~Ra~EL~~GG~~vl~~~g~~~~~~~~~---~~l~~al 172 (300)
|..++|+...+ |.+|.-.+-+-+.++ |...+ +.|...|..|+.+|...++..-.+.+|. ++|-.|-
T Consensus 23 WVl~~~d~~~~~lq~~pq~vRf~lY~~iD~~V~~~wi~Lm~~~r~~sl~~Gak~V~~~g~~rled~yc~d~De~li~Aa 101 (108)
T PF10789_consen 23 WVLQMPDEDKERLQAMPQDVRFELYKEIDEDVSDKWIELMRKHREDSLAAGAKFVRVNGKERLEDQYCYDTDELLIQAA 101 (108)
T ss_pred HHhcCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCceeccCCceecchhhccChHHHHHHHH
Confidence 77777765442 444433333333222 22322 4688889999999998854444455554 4554443
No 221
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=21.16 E-value=92 Score=29.26 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=34.3
Q ss_pred CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960 92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL 154 (300)
Q Consensus 92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~ 154 (300)
-.+.+|++++.+--.|.-= | --...+.+|++..++=|.|||+||+.=
T Consensus 163 ~~~~fDiIlcLSiTkWIHL------N----------wgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 163 IQPEFDIILCLSITKWIHL------N----------WGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccccEEEEEEeeeeEec------c----------cccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 4556888888888888311 1 012348899999999999999998853
No 222
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.13 E-value=57 Score=30.23 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHHH-HcCCCchhhhccccCCCcccCCHHHHHHHHHhcCC
Q 045960 133 FSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMI-SEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGS 211 (300)
Q Consensus 133 ~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~mv-~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gs 211 (300)
+...|..-...+++||-+++.+--+ ..+=++.+ ..|++...++. .+-.+++....++.|
T Consensus 157 L~~iLp~l~~l~~~~~~~v~LvKPQ-----------FEagr~~v~kkGvv~d~~~~--------~~v~~~i~~~~~~~g- 216 (245)
T COG1189 157 LKLILPALLLLLKDGGDLVLLVKPQ-----------FEAGREQVGKKGVVRDPKLH--------AEVLSKIENFAKELG- 216 (245)
T ss_pred HHHHHHHHHHhcCCCceEEEEecch-----------hhhhhhhcCcCceecCcchH--------HHHHHHHHHHHhhcC-
Confidence 5667777888999999988887311 11222222 34555533222 223556666666666
Q ss_pred eeEEEEEE
Q 045960 212 FDIQEVET 219 (300)
Q Consensus 212 F~I~~~e~ 219 (300)
|.+..+..
T Consensus 217 ~~~~gl~~ 224 (245)
T COG1189 217 FQVKGLIK 224 (245)
T ss_pred cEEeeeEc
Confidence 76665543
No 223
>PLN02672 methionine S-methyltransferase
Probab=20.87 E-value=43 Score=37.51 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhccCceeEEEEeecC
Q 045960 133 FSTFLKFRSEELKSQGRMVLTLLYND 158 (300)
Q Consensus 133 ~~~fL~~Ra~EL~~GG~~vl~~~g~~ 158 (300)
..+++..-.+-|+|||.|++.++++.
T Consensus 257 yr~i~~~a~~~L~pgG~l~lEiG~~q 282 (1082)
T PLN02672 257 IARAVEEGISVIKPMGIMIFNMGGRP 282 (1082)
T ss_pred HHHHHHHHHHhccCCCEEEEEECccH
Confidence 46777777789999999999997553
Done!