BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045962
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/412 (57%), Positives = 284/412 (68%), Gaps = 34/412 (8%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
QGFNWES GGWYNFL ++ DIA+AGITHVWL A
Sbjct: 5 QGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPP------------------ASQSV 46
Query: 88 SLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCI 147
+ GYMPGRLYDL AS YG++ +LKSLI A + KG+K +ADIVINHRTAE KD RGI+CI
Sbjct: 47 AEQGYMPGRLYDLDASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCI 106
Query: 148 FEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNW 207
FEGGTPD RLDWGP ICRDD Y+DG G+PD+G FG APDIDHLN RVQKEL +W+NW
Sbjct: 107 FEGGTPDARLDWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNW 166
Query: 208 LKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEKWDSLSYRQDGKLDARQDAHRR 267
LK +IGFDGWRFDF KGY+ + ++Y+ + P F VAE W SL+Y DGK + QD HR+
Sbjct: 167 LKADIGFDGWRFDFAKGYSADVAKIYIDRSEPSFAVAEIWTSLAYGGDGKPNLNQDQHRQ 226
Query: 268 NLKYWVQAAGRA--VTAFDFTTKGILQAA--------------PPGFIGLLPQNAVTFID 311
L WV G T FDFTTKGIL A PG IG P AVTF+D
Sbjct: 227 ELVNWVDKVGGKGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAKAVTFVD 286
Query: 312 NHDTGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGKLAAIRTKNGI 371
NHDTGSTQ +WPFPS +VM GYAYILTHPGTP IFYDH FDW LK+EI +L ++RT++GI
Sbjct: 287 NHDTGSTQHMWPFPSDRVMQGYAYILTHPGTPCIFYDHFFDWGLKEEIDRLVSVRTRHGI 346
Query: 372 NTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRNLIPRNFKVATSGKDYA 423
+ S++ I+ + +DLY+A ID K+I K+GP+ D+ NLIP FKVA G DYA
Sbjct: 347 HNESKLQIIEADADLYLAEIDGKVIVKLGPRYDVGNLIPGGFKVAAHGNDYA 398
>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
Length = 405
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/413 (53%), Positives = 274/413 (66%), Gaps = 35/413 (8%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
QGFNWES + GGWYN + ++ DIA+AG+THVWL HS+ ++
Sbjct: 6 QGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPS----------HSVSNE----- 50
Query: 88 SLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCI 147
GYMPGRLYD+ AS YG+ ELKSLI A + KG++ +ADIVINHR A+ KD RGI+CI
Sbjct: 51 ---GYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCI 107
Query: 148 FEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNW 207
FEGGT D RLDWGP ICRDDT YSDG + D+G F APDIDHLN RVQ+EL +W+ W
Sbjct: 108 FEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLW 167
Query: 208 LKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEKWDSLSYRQDGKLDARQDAHRR 267
LK+++GFD WR DF +GY+P + ++Y+ T P VAE WD+++ DGK + QDAHR+
Sbjct: 168 LKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQ 227
Query: 268 NLKYWVQAAGRAVTA---FDFTTKGILQAA--------------PPGFIGLLPQNAVTFI 310
NL WV G A +A FDFTTKGIL AA PG +G P AVTF+
Sbjct: 228 NLVNWVDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFV 287
Query: 311 DNHDTGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGKLAAIRTKNG 370
DNHDTGSTQ +WPFPS KVM GYAYILTHPG P IFYDH F+W K +I L AIR +NG
Sbjct: 288 DNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNG 347
Query: 371 INTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRNLIPRNFKVATSGKDYA 423
I TS + IL + D YVA ID K++ KIGP+ D+ +IP F + G DYA
Sbjct: 348 ITATSALKILMHEGDAYVAEIDGKVVVKIGPRYDVGAVIPAGFVTSAHGNDYA 400
>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
Length = 414
Score = 453 bits (1166), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/413 (53%), Positives = 274/413 (66%), Gaps = 35/413 (8%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
QGFNWES + GGWYN + ++ DIA+AG+THVWL HS+ ++
Sbjct: 6 QGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPS----------HSVSNE----- 50
Query: 88 SLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCI 147
GYMPGRLYD+ AS YG+ ELKSLI A + KG++ +ADIVINHR A+ KD RGI+CI
Sbjct: 51 ---GYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCI 107
Query: 148 FEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNW 207
FEGGT D RLDWGP ICRDDT YSDG + D+G F APDIDHLN RVQ+EL +W+ W
Sbjct: 108 FEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLW 167
Query: 208 LKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEKWDSLSYRQDGKLDARQDAHRR 267
LK+++GFD WR DF +GY+P + ++Y+ T P VAE WD+++ DGK + QDAHR+
Sbjct: 168 LKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQ 227
Query: 268 NLKYWVQAAGRAVTA---FDFTTKGILQAA--------------PPGFIGLLPQNAVTFI 310
NL WV G A +A FDFTTKGIL AA PG +G P AVTF+
Sbjct: 228 NLVNWVDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFV 287
Query: 311 DNHDTGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGKLAAIRTKNG 370
DNHDTGSTQ +WPFPS KVM GYAYILTHPG P IFYDH F+W K +I L AIR +NG
Sbjct: 288 DNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNG 347
Query: 371 INTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRNLIPRNFKVATSGKDYA 423
I TS + IL + D YVA ID K++ KIG + D+ +IP F + +G DYA
Sbjct: 348 ITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAAGNDYA 400
>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
Length = 405
Score = 451 bits (1161), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/413 (53%), Positives = 273/413 (66%), Gaps = 35/413 (8%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
QGFNWES + GGWYN + ++ DIA+AG+THVWL HS+ ++
Sbjct: 6 QGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPS----------HSVSNE----- 50
Query: 88 SLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCI 147
GYMPGRLYD+ AS YG+ ELKSLI A + KG++ +ADIVINHR A+ KD RGI+CI
Sbjct: 51 ---GYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCI 107
Query: 148 FEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNW 207
FEGGT D RLDWGP ICRDDT YSDG + D+G F APDIDHLN RVQ+EL +W+ W
Sbjct: 108 FEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLW 167
Query: 208 LKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEKWDSLSYRQDGKLDARQDAHRR 267
LK+++GFD WR DF +GY+P + ++Y+ T P VAE WD+++ DGK + QDAHR+
Sbjct: 168 LKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQ 227
Query: 268 NLKYWVQAAGRAVTA---FDFTTKGILQAA--------------PPGFIGLLPQNAVTFI 310
NL WV G A +A FDFTTKGIL AA PG +G P AVTF+
Sbjct: 228 NLVNWVDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFV 287
Query: 311 DNHDTGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGKLAAIRTKNG 370
DNHDTGSTQ +WPFPS KVM GYAYILTHPG P IFYDH F+W K +I L AIR +NG
Sbjct: 288 DNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNG 347
Query: 371 INTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRNLIPRNFKVATSGKDYA 423
I TS + IL + D YVA ID K++ KIG + D+ +IP F + G DYA
Sbjct: 348 ITATSALKILMHEGDAYVAEIDGKVVVKIGSRADVGAVIPAGFVTSAHGNDYA 400
>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha-
Amylase Isozyme 1
pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With The Substrate Analogue, Methyl
4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With Acarbose
Length = 405
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/413 (53%), Positives = 273/413 (66%), Gaps = 35/413 (8%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
QGFNWES + GGWYN + ++ DIA+AG+THVWL HS+ ++
Sbjct: 6 QGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPS----------HSVSNE----- 50
Query: 88 SLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCI 147
GYMPGRLYD+ AS YG+ ELKSLI A + KG++ +ADIVINHR A+ KD RGI+CI
Sbjct: 51 ---GYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCI 107
Query: 148 FEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNW 207
FEGGT D RLDWGP ICRDDT YSDG + D+G F APDIDHLN RVQ+EL +W+ W
Sbjct: 108 FEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLW 167
Query: 208 LKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEKWDSLSYRQDGKLDARQDAHRR 267
LK+++GFD WR DF +GY+P + ++Y+ T P VAE WD+++ DGK + QDAHR+
Sbjct: 168 LKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQ 227
Query: 268 NLKYWVQAAGRAVTA---FDFTTKGILQAA--------------PPGFIGLLPQNAVTFI 310
NL WV G A +A FDFTTKGIL AA PG +G P AVTF+
Sbjct: 228 NLVNWVDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFV 287
Query: 311 DNHDTGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGKLAAIRTKNG 370
DNHDTGSTQ +WPFPS KVM GYAYILTHPG P IFYDH F+W K +I L AIR +NG
Sbjct: 288 DNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNG 347
Query: 371 INTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRNLIPRNFKVATSGKDYA 423
I TS + IL + D YVA ID K++ KIG + D+ +IP F + G DYA
Sbjct: 348 ITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGNDYA 400
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/413 (53%), Positives = 272/413 (65%), Gaps = 35/413 (8%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
QGFNWES + GGWYN + ++ DIA+AG+THVWL HS+ ++
Sbjct: 6 QGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPS----------HSVSNE----- 50
Query: 88 SLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCI 147
GYMPGRLYD+ AS YG+ ELKSLI A + KG++ +ADIVINHR A+ KD RGI CI
Sbjct: 51 ---GYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIACI 107
Query: 148 FEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNW 207
FEGGT D RLDWGP ICRDDT YSDG + D+G F APDIDHLN RVQ+EL +W+ W
Sbjct: 108 FEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLW 167
Query: 208 LKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEKWDSLSYRQDGKLDARQDAHRR 267
LK+++GFD WR DF +GY+P + ++Y+ T P VAE WD+++ DGK + QDAHR+
Sbjct: 168 LKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQ 227
Query: 268 NLKYWVQAAGRAVTA---FDFTTKGILQAA--------------PPGFIGLLPQNAVTFI 310
NL WV G A +A FDFTTKGIL AA PG +G P AVTF+
Sbjct: 228 NLVNWVDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFV 287
Query: 311 DNHDTGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGKLAAIRTKNG 370
DNHDTGSTQ +WPFPS KVM GYAYILTHPG P IFYDH F+W K +I L AIR +NG
Sbjct: 288 DNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNG 347
Query: 371 INTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRNLIPRNFKVATSGKDYA 423
I TS + IL + D YVA ID K++ KIG + D+ +IP F + G DYA
Sbjct: 348 ITATSALKILMHEGDAYVAEIDGKVVVKIGSRADVGAVIPAGFVTSAHGNDYA 400
>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
Inactive Mutant D180a In Complex With Maltoheptaose
pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1 (amy1)
Inactive Mutant D180a In Complex With Acarbose
Length = 405
Score = 449 bits (1155), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/413 (53%), Positives = 272/413 (65%), Gaps = 35/413 (8%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
QGFNWES + GGWYN + ++ DIA+AG+THVWL HS+ ++
Sbjct: 6 QGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPS----------HSVSNE----- 50
Query: 88 SLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCI 147
GYMPGRLYD+ AS YG+ ELKSLI A + KG++ +ADIVINHR A+ KD RGI+CI
Sbjct: 51 ---GYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCI 107
Query: 148 FEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNW 207
FEGGT D RLDWGP ICRDDT YSDG + D+G F APDIDHLN RVQ+EL +W+ W
Sbjct: 108 FEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLW 167
Query: 208 LKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEKWDSLSYRQDGKLDARQDAHRR 267
LK+++GFD WR F +GY+P + ++Y+ T P VAE WD+++ DGK + QDAHR+
Sbjct: 168 LKSDLGFDAWRLAFARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQ 227
Query: 268 NLKYWVQAAGRAVTA---FDFTTKGILQAA--------------PPGFIGLLPQNAVTFI 310
NL WV G A +A FDFTTKGIL AA PG +G P AVTF+
Sbjct: 228 NLVNWVDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFV 287
Query: 311 DNHDTGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGKLAAIRTKNG 370
DNHDTGSTQ +WPFPS KVM GYAYILTHPG P IFYDH F+W K +I L AIR +NG
Sbjct: 288 DNHDTGSTQAMWPFPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNG 347
Query: 371 INTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRNLIPRNFKVATSGKDYA 423
I TS + IL + D YVA ID K++ KIG + D+ +IP F + G DYA
Sbjct: 348 ITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHGNDYA 400
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 175/406 (43%), Gaps = 59/406 (14%)
Query: 28 QGFNWESCNKK-GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSH 86
QGF+W + WYN L+++ IA+ G + +W+ + R F ++S
Sbjct: 21 QGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPW------RDF------SSWSD 68
Query: 87 ASLAGYMPGRLY-DLHASS-YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI 144
S +G G + D + + YGS +L+ A G+K L D+V NH
Sbjct: 69 GSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNH----------- 117
Query: 145 WCIFEGGTPDKRLDW--GPSFI---CRDDTTYSDGRGHPDSGEPF-GPAPDIDHLNPRVQ 198
G PDK ++ G F C D Y + D G+ F G D++ +P+V
Sbjct: 118 ---MNRGYPDKEINLPAGQGFWRNDCADPGNYPN---DCDDGDRFIGGDADLNTGHPQVY 171
Query: 199 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH-FTVAEKWDSLSYRQDGK 257
D L+++ G G+RFDFV+GYAP +M ++ + F V E W S +
Sbjct: 172 GMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPN-- 229
Query: 258 LDARQDAH-RRNLKYWVQAAGRAVTAFDFTTKGILQAAP-----PGFIG----LLPQNAV 307
D R A ++ +K W A V FDF K +Q G G + AV
Sbjct: 230 WDWRNTASWQQIIKDWSDRAKCPV--FDFALKERMQNGSIADWKHGLNGNPDPRWREVAV 287
Query: 308 TFIDNHDTGST------QRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGK 361
TF+DNHDTG + Q W + YAYILT PGTP +++DH++DW I +
Sbjct: 288 TFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQ 347
Query: 362 LAAIRTKNGINTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRN 407
L +R G+ S ++ + S L + + DL N
Sbjct: 348 LIQVRRAAGVRADSAISFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/406 (28%), Positives = 174/406 (42%), Gaps = 59/406 (14%)
Query: 28 QGFNWESCNKK-GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSH 86
QGF+W + WYN L+++ IA+ G + +W+ + R F ++S
Sbjct: 21 QGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPW------RDF------SSWSD 68
Query: 87 ASLAGYMPGRLY-DLHASS-YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI 144
S +G G + D + + YGS +L+ A G+K L D+V NH
Sbjct: 69 GSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNR-------- 120
Query: 145 WCIFEGGTPDKRLDW--GPSFI---CRDDTTYSDGRGHPDSGEPF-GPAPDIDHLNPRVQ 198
G PDK ++ G F C D Y + D G+ F G D++ +P+V
Sbjct: 121 ------GYPDKEINLPAGQGFWRNDCADPGNYPN---DCDDGDRFIGGDADLNTGHPQVY 171
Query: 199 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH-FTVAEKWDSLSYRQDGK 257
D L+++ G G+RFDFV+GYAP +M ++ + F V E W S +
Sbjct: 172 GMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPN-- 229
Query: 258 LDARQDAH-RRNLKYWVQAAGRAVTAFDFTTKGILQAAP-----PGFIG----LLPQNAV 307
D R A ++ +K W A FDF K +Q G G + AV
Sbjct: 230 WDWRNTASWQQIIKDWSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAV 287
Query: 308 TFIDNHDTGST------QRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGK 361
TF+DNHDTG + Q W + YAYILT PGTP +++DH++DW I +
Sbjct: 288 TFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQ 347
Query: 362 LAAIRTKNGINTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRN 407
L +R G+ S ++ + S L + + DL N
Sbjct: 348 LIQVRRAAGVRADSAISFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 174/406 (42%), Gaps = 59/406 (14%)
Query: 28 QGFNWESCNKK-GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSH 86
QGF+W + WYN L+++ IA+ G + +W+ + R F ++S
Sbjct: 21 QGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPW------RDF------SSWSD 68
Query: 87 ASLAGYMPGRLY-DLHASS-YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI 144
S +G G + D + + YGS +L+ A G+K L D+V NH
Sbjct: 69 GSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNR-------- 120
Query: 145 WCIFEGGTPDKRLDW--GPSFI---CRDDTTYSDGRGHPDSGEPF-GPAPDIDHLNPRVQ 198
G PDK ++ G F C D Y + D G+ F G D++ +P+V
Sbjct: 121 ------GYPDKEINLPAGQGFWRNDCADPGNYPN---DCDDGDRFIGGDADLNTGHPQVY 171
Query: 199 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH-FTVAEKWDSLSYRQDGK 257
D L+++ G G+RFDFV+GYAP +M ++ + F V + W S +
Sbjct: 172 GMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGQLWKGPSEYPN-- 229
Query: 258 LDARQDAH-RRNLKYWVQAAGRAVTAFDFTTKGILQAAP-----PGFIG----LLPQNAV 307
D R A ++ +K W A FDF K +Q G G + AV
Sbjct: 230 WDWRNTASWQQIIKDWSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAV 287
Query: 308 TFIDNHDTGST------QRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGK 361
TF+DNHDTG + Q W + YAYILT PGTP +++DH++DW I +
Sbjct: 288 TFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQ 347
Query: 362 LAAIRTKNGINTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRN 407
L +R G+ S ++ + S L + + DL N
Sbjct: 348 LIQVRRAAGVRADSAISFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 174/406 (42%), Gaps = 59/406 (14%)
Query: 28 QGFNWESCNKK-GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSH 86
QGF+W + WYN L+++ IA+ G + +W+ + R F ++S
Sbjct: 21 QGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPW------RDF------SSWSD 68
Query: 87 ASLAGYMPGRLY-DLHASS-YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI 144
S +G G + D + + YGS +L+ A G+K L D+V NH
Sbjct: 69 GSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNR-------- 120
Query: 145 WCIFEGGTPDKRLDW--GPSFI---CRDDTTYSDGRGHPDSGEPF-GPAPDIDHLNPRVQ 198
G PDK ++ G F C D Y + D G+ F G D++ +P+V
Sbjct: 121 ------GYPDKEINLPAGQGFWRNDCADPGNYPN---DCDDGDRFIGGDADLNTGHPQVY 171
Query: 199 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH-FTVAEKWDSLSYRQDGK 257
D L+++ G G+RF+FV+GYAP +M ++ + F V E W S +
Sbjct: 172 GMFRDEFTNLRSQYGAGGFRFNFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPN-- 229
Query: 258 LDARQDAH-RRNLKYWVQAAGRAVTAFDFTTKGILQAAP-----PGFIG----LLPQNAV 307
D R A ++ +K W A FDF K +Q G G + AV
Sbjct: 230 WDWRNTASWQQIIKDWSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAV 287
Query: 308 TFIDNHDTGST------QRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGK 361
TF+DNHDTG + Q W + YAYILT PGTP +++DH++DW I +
Sbjct: 288 TFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQ 347
Query: 362 LAAIRTKNGINTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRN 407
L +R G+ S ++ + S L + + DL N
Sbjct: 348 LIQVRRAAGVRADSAISFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 174/406 (42%), Gaps = 59/406 (14%)
Query: 28 QGFNWESCNKK-GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSH 86
QGF+W + WYN L+++ IA+ G + +W+ + R F ++S
Sbjct: 21 QGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPW------RDF------SSWSD 68
Query: 87 ASLAGYMPGRLY-DLHASS-YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI 144
S +G G + D + + YGS +L+ A G+K L D+V NH
Sbjct: 69 GSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNR-------- 120
Query: 145 WCIFEGGTPDKRLDW--GPSFI---CRDDTTYSDGRGHPDSGEPF-GPAPDIDHLNPRVQ 198
G PDK ++ G F C D Y + D G+ F G D++ +P+V
Sbjct: 121 ------GYPDKEINLPAGQGFWRNDCADPGNYPN---DCDDGDRFIGGDADLNTGHPQVY 171
Query: 199 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH-FTVAEKWDSLSYRQDGK 257
D L+++ G G+RFDFV+GYAP +M ++ + F V E W S +
Sbjct: 172 GMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPN-- 229
Query: 258 LDARQDAH-RRNLKYWVQAAGRAVTAFDFTTKGILQAAP-----PGFIG----LLPQNAV 307
D R A ++ +K W A FDF K +Q G G + AV
Sbjct: 230 WDWRNTASWQQIIKDWSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAV 287
Query: 308 TFIDNHDTGST------QRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGK 361
TF+DNH+TG + Q W + YAYILT PGTP +++DH++DW I +
Sbjct: 288 TFVDNHNTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQ 347
Query: 362 LAAIRTKNGINTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRN 407
L +R G+ S ++ + S L + + DL N
Sbjct: 348 LIQVRRAAGVRADSAISFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 173/406 (42%), Gaps = 59/406 (14%)
Query: 28 QGFNWESCNKK-GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSH 86
QGF+W + WYN L+++ IA+ G + +W+ + R F ++S
Sbjct: 21 QGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPW------RDF------SSWSD 68
Query: 87 ASLAGYMPGRLY-DLHASS-YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI 144
S +G G + D + + YGS +L+ A G+K L D+V NH
Sbjct: 69 GSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNR-------- 120
Query: 145 WCIFEGGTPDKRLDW--GPSFI---CRDDTTYSDGRGHPDSGEPF-GPAPDIDHLNPRVQ 198
G PDK ++ G F C D Y + D G+ F G D++ +P+V
Sbjct: 121 ------GYPDKEINLPAGQGFWRNDCADPGNYPN---DCDDGDRFIGGDADLNTGHPQVY 171
Query: 199 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH-FTVAEKWDSLSYRQDGK 257
D L+++ G G+RF FV+GYAP +M ++ + F V E W S +
Sbjct: 172 GMFRDEFTNLRSQYGAGGFRFGFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPN-- 229
Query: 258 LDARQDAH-RRNLKYWVQAAGRAVTAFDFTTKGILQAAP-----PGFIG----LLPQNAV 307
D R A ++ +K W A FDF K +Q G G + AV
Sbjct: 230 WDWRNTASWQQIIKDWSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAV 287
Query: 308 TFIDNHDTGST------QRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGK 361
TF+DNHDTG + Q W + YAYILT PGTP +++DH++DW I +
Sbjct: 288 TFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQ 347
Query: 362 LAAIRTKNGINTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRN 407
L +R G+ S ++ + S L + + DL N
Sbjct: 348 LIQVRRAAGVRADSAISFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 173/406 (42%), Gaps = 59/406 (14%)
Query: 28 QGFNWESCNKK-GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSH 86
QGF+W + WYN L+++ IA+ G + +W+ + R F ++S
Sbjct: 21 QGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPW------RDF------SSWSD 68
Query: 87 ASLAGYMPGRLY-DLHASS-YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI 144
S +G G + D + + YGS +L+ A G+K L D+V NH
Sbjct: 69 GSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNR-------- 120
Query: 145 WCIFEGGTPDKRLDW--GPSFI---CRDDTTYSDGRGHPDSGEPF-GPAPDIDHLNPRVQ 198
G PDK ++ G F C D Y + D G+ F G D++ +P+V
Sbjct: 121 ------GYPDKEINLPAGQGFWRNDCADPGNYPN---DCDDGDRFIGGDADLNTGHPQVY 171
Query: 199 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH-FTVAEKWDSLSYRQDGK 257
D L+++ G G+RFDFV+GYAP +M ++ + F V W S +
Sbjct: 172 GMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGGLWKGPSEYPN-- 229
Query: 258 LDARQDAH-RRNLKYWVQAAGRAVTAFDFTTKGILQAAP-----PGFIG----LLPQNAV 307
D R A ++ +K W A FDF K +Q G G + AV
Sbjct: 230 WDWRNTASWQQIIKDWSDRA--KCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAV 287
Query: 308 TFIDNHDTGST------QRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGK 361
TF+DNHDTG + Q W + YAYILT PGTP +++DH++DW I +
Sbjct: 288 TFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQ 347
Query: 362 LAAIRTKNGINTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRN 407
L +R G+ S ++ + S L + + DL N
Sbjct: 348 LIQVRRAAGVRADSAISFHSGYSGLVATVSGSQQTLVVALNSDLGN 393
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 110/390 (28%), Positives = 157/390 (40%), Gaps = 99/390 (25%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWL-------SSTFSLCCSPRLFFHSII 80
Q F W+ G W++ ++ +IP+ AGI+ +WL S +S+ P +F +
Sbjct: 14 QAFYWD-VPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFD--L 70
Query: 81 HQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKD 140
+ Y ++ + +GS+ EL LIQ + GIK +AD+VINHR +
Sbjct: 71 GEYYQKGTVE------------TRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLE 118
Query: 141 RRGI-----WCIF----EGGTPDKRLDWGPSFI-CRDDTTYSDGRGHPDSGEPFGPAPDI 190
W F G LD+ P+ + C D+ T FG PDI
Sbjct: 119 WNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGT-------------FGGFPDI 165
Query: 191 DHLNPRVQKELSDWMNWLKTE--------IGFDGWRFDFVKGYAPSITRLYMKNTMPHFT 242
H KE + W E IGFDGWRFD+VKGY + R ++ N +
Sbjct: 166 CH-----HKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWL-NWWGGWA 219
Query: 243 VAEKWDSLSYRQDGKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAA-----PPG 297
V E WD+ +DA L W +G V FDF + A P
Sbjct: 220 VGEYWDT-------NVDA--------LLSWAYESGAKV--FDFPLYYKMDEAFDNNNIPA 262
Query: 298 FIGLL----------PQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
+ L P AVTF+ NHDT +P YA+ILT+ G P IFY
Sbjct: 263 LVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYP--------AYAFILTYEGQPVIFY 314
Query: 348 DHLFDWDLKKEIGKLAAIRTKNGINTTSRV 377
+W K ++ L I +T+ V
Sbjct: 315 RDFEEWLNKDKLINLIWIHDHLAGGSTTIV 344
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 157/397 (39%), Gaps = 113/397 (28%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q F W+ G W++ ++++IP+ AGI+ +W+ + A
Sbjct: 14 QAFYWD-VPSGGIWWDTIRQKIPEWYDAGISAIWIPPA---------------SKGMGGA 57
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKK 139
GY P +DL + +GS+ EL ++I + G+K +ADIVINHR
Sbjct: 58 YSMGYDPYDFFDLGEYDQKGTVETRFGSKQELVNMINTAHAYGMKVIADIVINHRA---- 113
Query: 140 DRRGIWCIFEGGTPDKRLDWGP---SFICRDDTTYSDGRG-------HP------DSGEP 183
GG L+W P + D + + G+ HP DSG
Sbjct: 114 ----------GGD----LEWNPFVNDYTWTDFSKVASGKYTANYLDFHPNELHAGDSGT- 158
Query: 184 FGPAPDIDHLNPRVQKELSDWMNWLKTE--------IGFDGWRFDFVKGYAPSITRLYMK 235
FG PDI H K + W E IG D WRFD+VKGYAP + + ++
Sbjct: 159 FGGYPDICH-----DKSWDQYWLWASQESYAAYLRSIGIDAWRFDYVKGYAPWVVKDWL- 212
Query: 236 NTMPHFTVAEKWDSLSYRQDGKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAA- 294
N + V E WD+ +DA + W ++G V FDF + A
Sbjct: 213 NWWGGWAVGEYWDT-------NVDAVLN--------WAYSSGAKV--FDFALYYKMDEAF 255
Query: 295 ----PPGFIGLL----------PQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYILTHP 340
P + L P AVTF+ NHDT +P YA+ILT+
Sbjct: 256 DNKNIPALVSALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYP--------AYAFILTYE 307
Query: 341 GTPSIFYDHLFDWDLKKEIGKLAAIRTKNGINTTSRV 377
G P+IFY +W K ++ L I +T V
Sbjct: 308 GQPTIFYRDYEEWLNKDKLKNLIWIHENLAGGSTDIV 344
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 152/390 (38%), Gaps = 66/390 (16%)
Query: 28 QGFNWESCN--------KKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSI 79
Q F WE ++ +N L +R P++A AG T VWL H +
Sbjct: 127 QAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGFTAVWLPPANKGMAG----IHDV 182
Query: 80 IHQAYSHASLAGY-MPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTA-- 136
+ Y L + G + + YG++ EL++ I A + IK D V+NHR
Sbjct: 183 GYGTYDLWDLGEFDQKGTV----RTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGAD 238
Query: 137 ---------EKKDRRG----IWCIFE-GGTPDKRLDWGPSFICRDDTTYSD-----GRGH 177
+D+ G W F G + ++ + C D T + D G+
Sbjct: 239 YAETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYL 298
Query: 178 PDS---------GEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPS 228
D E + D+D+ N VQ ++ DW W+ I FDG+R D VK
Sbjct: 299 FDEKSWDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYR 358
Query: 229 ITRLYMKNTMPH-----FTVAEKWDSLSYRQDGKLDARQDAHRRNL-----KYWVQAAGR 278
+M F V E W G LD + R ++V
Sbjct: 359 FIDKWMSAVQNSSNRDVFFVGEAWVEDVDDLKGFLDTVGNPDLRVFDFPLRSFFVDMLNG 418
Query: 279 AVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFP-SAKVMLGYAYIL 337
A A D G++ + PG+ AVTF+DNHDT + + ++ YAYIL
Sbjct: 419 AYMA-DLRNAGLVNS--PGY----ENRAVTFVDNHDTDRDEGSYTVSIYSRKYQAYAYIL 471
Query: 338 TH-PGTPSIFYDHLFDWDLKKEIGKLAAIR 366
T G P++++ + W++K+ + KL R
Sbjct: 472 TRAEGVPTVYWKDYYIWEMKEGLDKLLTAR 501
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 146/388 (37%), Gaps = 91/388 (23%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q F W + N W L+ ++ GIT VW+ +
Sbjct: 7 QYFEWYTPNDGQHW-KRLQNDAEHLSDIGITAVWIPPAYKGLSQ---------------- 49
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINHR----- 134
S GY P LYDL + YG+++EL+ I + + + ++ D+V+NH+
Sbjct: 50 SDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADA 109
Query: 135 -----------------TAEK------------------KDRRGIWCIFEGGTPDKRLDW 159
T+E+ D + W F+G D+
Sbjct: 110 TEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKI 169
Query: 160 GPSFICRDDTTYSDGRGHPDSGE-PFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 218
F R + D ++G + D+D+ +P V E W W E+ DG+R
Sbjct: 170 SRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFR 229
Query: 219 FDFVKGYAPSITRLYMKNT-----MPHFTVAEKWDSLSYRQDGKLDA---RQDAHRRNLK 270
D K S R +++ FTVAE W + + + + L+ Q L
Sbjct: 230 IDAAKHIKFSFLRDWVQAVRQATGKEMFTVAEYWQNNAGKLENYLNKTSFNQSVFDVPLH 289
Query: 271 YWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTG------STQRLWPF 324
+ +QAA +D + +L + P+ AVTF++NHDT ST + W
Sbjct: 290 FNLQAASSQGGGYDM--RRLLDGT---VVSRHPEKAVTFVENHDTQPGQSLESTVQTWFK 344
Query: 325 PSAKVMLGYAYILT-HPGTPSIFYDHLF 351
P L YA+ILT G P +FY ++
Sbjct: 345 P-----LAYAFILTRESGYPQVFYGDMY 367
>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
Length = 483
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 145/388 (37%), Gaps = 91/388 (23%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q F W + N W L+ ++ GIT VW+ +
Sbjct: 7 QYFEWYTPNDGQHWKR-LQNDAEHLSDIGITAVWIPPAYKGLSQ---------------- 49
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINHR----- 134
S GY P LYDL + YG+++EL+ I + + + ++ D+V+NH+
Sbjct: 50 SDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADA 109
Query: 135 -----------------TAEK------------------KDRRGIWCIFEGGTPDKRLDW 159
T+E+ D + W F+G D+
Sbjct: 110 TEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKI 169
Query: 160 GPSFICRDDTTYSDGRGHPDSGE-PFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 218
F R + D ++G + D+D+ +P V E W W E+ DG+R
Sbjct: 170 SRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFR 229
Query: 219 FDFVKGYAPSITRLYMKNTM-----PHFTVAEKWDSLSYRQDGKLDA---RQDAHRRNLK 270
D K S R +++ FTVAE W + + + + L+ Q L
Sbjct: 230 IDAAKHIKFSFLRDWVQAVRQATGKEMFTVAEYWQNNAGKLENYLNKTSFNQSVFDVPLH 289
Query: 271 YWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTG------STQRLWPF 324
+ +QAA +D + +L + P +VTF+DNHDT ST + W
Sbjct: 290 FNLQAASSQGGGYDM--RKLLNGT---VVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFK 344
Query: 325 PSAKVMLGYAYILT-HPGTPSIFYDHLF 351
P L YA+ILT G P +FY ++
Sbjct: 345 P-----LAYAFILTRESGYPQVFYGDMY 367
>pdb|1VJS|A Chain A, Structure Of Alpha-Amylase Precursor
Length = 483
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 140/386 (36%), Gaps = 89/386 (23%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q F W N W L+ +A GIT VW+ + +
Sbjct: 9 QYFEWYMPNDGQHW-KRLQNDSAYLAEHGITAVWIPPAYKGTSQADV------------- 54
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINHR----- 134
GY LYDL + YG++ EL+S I++ + + I D+VINH+
Sbjct: 55 ---GYGAYDLYDLGEFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADA 111
Query: 135 -------TAEKKDRRGI---------WCIFE-GGTPDKRLDWGPSFICRDDTTYSDGR-- 175
+ DR + W F G D+ + D T + + R
Sbjct: 112 TEDVTAVEVDPADRNRVISGEHLIKAWTHFHFPGRGSTYSDFKWHWYHFDGTDWDESRKL 171
Query: 176 ---------------GHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 220
+ + + DID+ +P V E+ W W E+ DG+R D
Sbjct: 172 NRIYKFQGKAWDWEVSNENGNYDYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLD 231
Query: 221 FVKGYAPSITRLYM-----KNTMPHFTVAEKWDSLSYRQDGKLDARQDAHR---RNLKYW 272
VK S R ++ K FTVAE W + + L+ H L Y
Sbjct: 232 AVKHIKFSFLRDWVNHVREKTGKEMFTVAEYWQNDLGALENYLNKTNFNHSVFDVPLHYQ 291
Query: 273 VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTG------STQRLWPFPS 326
AA +D + +L + + P AVTF+DNHDT ST + W P
Sbjct: 292 FHAASTQGGGYDM--RKLLNST---VVSKHPLKAVTFVDNHDTQPGQSLESTVQTWFKP- 345
Query: 327 AKVMLGYAYILT-HPGTPSIFYDHLF 351
L YA+ILT G P +FY ++
Sbjct: 346 ----LAYAFILTRESGYPQVFYGDMY 367
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 142/380 (37%), Gaps = 82/380 (21%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q F W N W N L+ ++ S GIT VW+ + +
Sbjct: 11 QYFEWHLPNDGNHW-NRLRDDAANLKSKGITAVWIPPAWKGTSQNDV------------- 56
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINH------ 133
GY LYDL + YG++++L+ + + GI+ D+V+NH
Sbjct: 57 ---GYGAYDLYDLGEFNQKGTVRTKYGTRSQLQGAVTSLKNNGIQVYGDVVMNHKGGADG 113
Query: 134 ----------RTAEKKDRRG-----IWCIFE----GGTPDK---------RLDWGPSFIC 165
R+ ++ G W F+ G T DW S
Sbjct: 114 TEMVNAVEVNRSNRNQEISGEYTIEAWTKFDFPGRGNTHSNFKWRWYHFDGTDWDQSRQL 173
Query: 166 RDDTTYSDGRGH--------PDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGW 217
++ G G + + DID +P V EL +W W + DG+
Sbjct: 174 QNKIYKFRGTGKAWDWEVDIENGNYDYLMYADIDMDHPEVINELRNWGVWYTNTLNLDGF 233
Query: 218 RFDFVKGYAPSITR---LYMKNTM--PHFTVAEKWDSLSYRQDGKLDARQDAHR---RNL 269
R D VK S TR +++NT P F VAE W + + L+ H L
Sbjct: 234 RIDAVKHIKYSYTRDWLTHVRNTTGKPMFAVAEFWKNDLAAIENYLNKTSWNHSVFDVPL 293
Query: 270 KYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKV 329
Y + A + FD + IL + + P +AVTF+DNHD+ + L F +
Sbjct: 294 HYNLYNASNSGGYFDM--RNILNGS---VVQKHPIHAVTFVDNHDSQPGEALESFVQSWF 348
Query: 330 M-LGYAYILT-HPGTPSIFY 347
L YA ILT G PS+FY
Sbjct: 349 KPLAYALILTREQGYPSVFY 368
>pdb|1OB0|A Chain A, Kinetic Stabilization Of Bacillus Licheniformis-Amylase
Through Introduction Of Hydrophobic Residues At The
Surface
Length = 483
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 139/388 (35%), Gaps = 93/388 (23%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q F W N W L+ +A GIT VW+ + +
Sbjct: 9 QYFEWYMPNDGQHW-KRLQNDSAYLAEHGITAVWIPPAYKGTSQADV------------- 54
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINHR----- 134
GY LYDL + YG++ EL+S I++ + + I D+VINH+
Sbjct: 55 ---GYGAYDLYDLGEFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADA 111
Query: 135 ----TAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHP------------ 178
TA + D + G K W +TYSD + H
Sbjct: 112 TEDVTAVEVDPADRNRVISGEVLIKA--WTHFHFPGRGSTYSDFKWHWYHFDGTDWDESR 169
Query: 179 ---------------DSGEPFGPA-----PDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 218
+ FG DID+ +P V E+ W W E+ DG+R
Sbjct: 170 KLNRIYKFQGKAWDWEVSNEFGNYDYLMYADIDYDHPDVVAEIKRWGTWYANELQLDGFR 229
Query: 219 FDFVKGYAPSITRLYM-----KNTMPHFTVAEKWD-SLSYRQD--GKLDARQDAHRRNLK 270
D VK S R ++ K FTVAE W L ++ K + L
Sbjct: 230 LDAVKHIKFSFLRDWVNHVREKTGKEMFTVAEYWSYDLGALENYLNKTNFNHSVFDVPLH 289
Query: 271 YWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTG------STQRLWPF 324
Y AA +D + +L + P +VTF+DNHDT ST + W
Sbjct: 290 YQFHAASTQGGGYDM--RKLLNGT---VVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFK 344
Query: 325 PSAKVMLGYAYILT-HPGTPSIFYDHLF 351
P L YA+ILT G P +FY ++
Sbjct: 345 P-----LAYAFILTRESGYPQVFYGDMY 367
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 131/333 (39%), Gaps = 75/333 (22%)
Query: 45 LKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASS 104
LK + + GI VWL FS S GY Y A
Sbjct: 25 LKNAVSYLKELGIDFVWLMPVFS------------------SISFHGYDVVDFYSFKAE- 65
Query: 105 YGSQNELKSLIQAFNKKGIKCLADIVINH----RTAEKKDRRG--------IWCIFEGGT 152
YGS+ E K +I+AF+ GIK + D+ I+H T +K +G +W E
Sbjct: 66 YGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDL 125
Query: 153 PDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEI 212
D+R +W I DGR + PF +PD+++ NP+V E+ + L ++
Sbjct: 126 -DERREWDGEKIWH---PLEDGRFYRGLFGPF--SPDLNYDNPQVFDEMKRLVLHL-LDM 178
Query: 213 GFDGWRFDFVKGYAPSITR-----LYMKNTMPHFTVAEKW-DSLSYRQDGKLDA------ 260
G DG+RFD K +I + Y + + +AE W ++ + G++
Sbjct: 179 GVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGIFLAEIWAEARMVDEHGRIFGYMLNFD 238
Query: 261 -----RQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDT 315
++ + N + +++ RAV A D+ LP V F NHD
Sbjct: 239 TSHCIKEAVWKENTRVLIESIERAVIAKDY----------------LP---VNFTSNHDM 279
Query: 316 GSTQRLW-PFPSAKVMLGYAYILTHPGTPSIFY 347
F K+ L + + T PG P +FY
Sbjct: 280 SRLASFEGGFSKEKIKLSISILFTLPGVPLVFY 312
>pdb|1BLI|A Chain A, Bacillus Licheniformis Alpha-Amylase
Length = 483
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 135/392 (34%), Gaps = 101/392 (25%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q F W N W L+ +A GIT VW+ + +
Sbjct: 9 QYFEWYMPNDGQHW-KRLQNDSAYLAEHGITAVWIPPAYKGTSQADV------------- 54
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINH------ 133
GY LYDL + YG++ EL+S I++ + + I D+VINH
Sbjct: 55 ---GYGAYDLYDLGEFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADA 111
Query: 134 ----------------------------------RTAEKKDRRGIWCIFEGGTPDKRLDW 159
R + D + W F+G DW
Sbjct: 112 TEDVTAVEVDPADRNRVISGEHLIKAWTHFHFPGRGSTYSDFKWHWYHFDG------TDW 165
Query: 160 GPSFICRDDTTYSDGRGHPDSGEPFGPA-----PDIDHLNPRVQKELSDWMNWLKTEIGF 214
S + + FG DID+ +P V E+ W W E+
Sbjct: 166 DESRKLNRIYKFQGKAWDWEVSNEFGNYDYLMYADIDYDHPDVAAEIKRWGTWYANELQL 225
Query: 215 DGWRFDFVKGYAPSITRLYM-----KNTMPHFTVAEKWD-SLSYRQD--GKLDARQDAHR 266
DG+R D VK S R ++ K FTVAE W L ++ K +
Sbjct: 226 DGFRLDAVKHIKFSFLRDWVNHVREKTGKEMFTVAEYWSYDLGALENYLNKTNFNHSVFD 285
Query: 267 RNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTG------STQR 320
L Y AA +D + +L + P +VTF+DNHDT ST +
Sbjct: 286 VPLHYQFHAASTQGGGYDM--RKLLNGT---VVSKHPLKSVTFVDNHDTQPGQSLESTVQ 340
Query: 321 LWPFPSAKVMLGYAYILT-HPGTPSIFYDHLF 351
W P L YA+ILT G P +FY ++
Sbjct: 341 TWFKP-----LAYAFILTRESGYPQVFYGDMY 367
>pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38)
pdb|1UD4|A Chain A, Crystal Structure Of Calcium Free Alpha Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38, In Calcium
Containing Solution)
pdb|1UD5|A Chain A, Crystal Structure Of Amyk38 With Rubidium Ion
pdb|1UD6|A Chain A, Crystal Structure Of Amyk38 With Potassium Ion
pdb|1UD8|A Chain A, Crystal Structure Of Amyk38 With Lithium Ion
Length = 480
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 142/385 (36%), Gaps = 95/385 (24%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q + W N W N L ++ AGIT +W+ + + S A
Sbjct: 9 QYYEWHLENDGQHW-NRLHDDAAALSDAGITAIWIPPAY---------------KGNSQA 52
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINH------ 133
+ GY LYDL + YG++ +L+ I + I D+V+NH
Sbjct: 53 DV-GYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADF 111
Query: 134 ----------------------------------RTAEKKDRRGIWCIFEGGTPDKRLDW 159
R D + W F G D+R
Sbjct: 112 TEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQ- 170
Query: 160 GPSFICRDDTTYSDGRGHPDSGE-PFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 218
+ I R T + R ++G + +ID +P VQ EL DW +W E+ DG+R
Sbjct: 171 -ENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYR 229
Query: 219 FDFVKGYAPSITRLYMKNTMPH---------FTVAEKWD----SLSYRQDGKLDARQDAH 265
D +K I Y + + H F V E W +L + D +++
Sbjct: 230 LDAIK----HIPFWYTSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLD-EMNWEMSLF 284
Query: 266 RRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDT--GSTQRLWP 323
L Y A + ++D + IL+ + + P +AVTF+DNHDT G + W
Sbjct: 285 DVPLNYNFYRASQQGGSYDM--RNILRGS---LVEAHPMHAVTFVDNHDTQPGESLESWV 339
Query: 324 FPSAKVMLGYAYILTHPGT-PSIFY 347
K L YA ILT G P++FY
Sbjct: 340 ADWFKP-LAYATILTREGGYPNVFY 363
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 138/384 (35%), Gaps = 90/384 (23%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q F W N W N L ++ S GIT VW+ + +
Sbjct: 11 QYFEWYLPNDGNHW-NRLNSDASNLKSKGITAVWIPPAWKGASQNDV------------- 56
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINH------ 133
GY LYDL + YG++++L++ + + GI+ D+V+NH
Sbjct: 57 ---GYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADA 113
Query: 134 -------------RTAEKKDRRGI--WCIFE----GGTPDK---------RLDWGPSFIC 165
R E I W F+ G T +DW S
Sbjct: 114 TEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQS--R 171
Query: 166 RDDTTYSDGRGH----------PDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 215
R + RGH + + DID +P V EL +W W +G D
Sbjct: 172 RLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLD 231
Query: 216 GWRFDFVKGYAPSITRLYMKNTMP-----HFTVAEKWDS-----LSYRQDGKLDARQDAH 265
G+R D VK S TR ++ + F VAE W + +Y Q K +
Sbjct: 232 GFRIDAVKHIKYSFTRDWINHVRSATGKNMFAVAEFWKNDLGAIENYLQ--KTNWNHSVF 289
Query: 266 RRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFP 325
L Y + A ++ +D + I + P +AVTF+DNHD+ + L F
Sbjct: 290 DVPLHYNLYNASKSGGNYDM--RNIFNGT---VVQRHPSHAVTFVDNHDSQPEEALESFV 344
Query: 326 SAKVM-LGYAYILT-HPGTPSIFY 347
L YA LT G PS+FY
Sbjct: 345 EEWFKPLAYALTLTREQGYPSVFY 368
>pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant
Length = 480
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 142/385 (36%), Gaps = 95/385 (24%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q + W N W N L ++ AGIT +W+ + + S A
Sbjct: 9 QYYEWHLENDGQHW-NRLHDDAAALSDAGITAIWIPPAY---------------KGNSQA 52
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINH------ 133
+ GY LYDL + YG++ +L+ I + I D+V+NH
Sbjct: 53 DV-GYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADF 111
Query: 134 ----------------------------------RTAEKKDRRGIWCIFEGGTPDKRLDW 159
R D + W F G D+R
Sbjct: 112 TEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQ- 170
Query: 160 GPSFICRDDTTYSDGRGHPDSGE-PFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 218
+ I R T + R ++G + +ID +P VQ EL DW +W E+ DG+R
Sbjct: 171 -ENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYR 229
Query: 219 FDFVKGYAPSITRLYMKNTMPH---------FTVAEKWD----SLSYRQDGKLDARQDAH 265
D +K I Y + + H F V E W +L + D +++
Sbjct: 230 LDAIK----HIPFWYTSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLD-EMNWEMSLF 284
Query: 266 RRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDT--GSTQRLWP 323
L Y A + ++D + IL+ + + P +AVTF+DNHDT G + W
Sbjct: 285 DVPLHYNFYRASQQGGSYDM--RNILRGS---LVEAHPMHAVTFVDNHDTQPGESLESWV 339
Query: 324 FPSAKVMLGYAYILTHPGT-PSIFY 347
K L YA ILT G P++FY
Sbjct: 340 ADWFKP-LAYATILTREGGYPNVFY 363
>pdb|1W9X|A Chain A, Bacillus Halmapalus Alpha Amylase
Length = 481
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 137/386 (35%), Gaps = 94/386 (24%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q F W N W N L+ ++ + GIT +W+ + +
Sbjct: 7 QYFEWHLPNDGQHW-NRLRDDASNLRNRGITAIWIPPAWKGTSQNDV------------- 52
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINH------ 133
GY LYDL + YG++++L+S I A G++ D+V+NH
Sbjct: 53 ---GYGAYDLYDLGEFNQKGTVRTKYGTRSQLESAIHALKNNGVQVYGDVVMNHKGGADA 109
Query: 134 ----------------------------------RTAEKKDRRGIWCIFEGGTPDKRLDW 159
R D + W F+G +DW
Sbjct: 110 TENVLAVEVNPNNRNQEISGDYTIEAWTKFDFPGRGNTYSDFKWRWYHFDG------VDW 163
Query: 160 GPS-------FICRDDTTYSDGRGHPDSGE-PFGPAPDIDHLNPRVQKELSDWMNWLKTE 211
S + R D D ++G + D+D +P V EL W W
Sbjct: 164 DQSRQFQNRIYKFRGDGKAWDWEVDSENGNYDYLMYADVDMDHPEVVNELRRWGEWYTNT 223
Query: 212 IGFDGWRFDFVKGYAPSITRLYMKNTM-----PHFTVAEKW-DSLSYRQD--GKLDARQD 263
+ DG+R D VK S TR ++ + F VAE W + L ++ K +
Sbjct: 224 LNLDGFRIDAVKHIKYSFTRDWLTHVRNATGKEMFAVAEFWKNDLGALENYLNKTNWNHS 283
Query: 264 AHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWP 323
L Y + A + +D +L + P +AVTF+DNHD+ + L
Sbjct: 284 VFDVPLHYNLYNASNSGGNYDMAK--LLNGT---VVQKHPMHAVTFVDNHDSQPGESLES 338
Query: 324 FPSAKVM-LGYAYILT-HPGTPSIFY 347
F L YA ILT G PS+FY
Sbjct: 339 FVQEWFKPLAYALILTREQGYPSVFY 364
>pdb|2GJP|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase,
Crystallized With The Substrate Analogue Acarbose And
Maltose
pdb|2GJR|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase Without Any
Substrate Analogues
Length = 485
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 137/386 (35%), Gaps = 94/386 (24%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q F W N W N L+ ++ + GIT +W+ + +
Sbjct: 11 QYFEWHLPNDGQHW-NRLRDDASNLRNRGITAIWIPPAWKGTSQNDV------------- 56
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINH------ 133
GY LYDL + YG++++L+S I A G++ D+V+NH
Sbjct: 57 ---GYGAYDLYDLGEFNQKGTVRTKYGTRSQLESAIHALKNNGVQVYGDVVMNHKGGADA 113
Query: 134 ----------------------------------RTAEKKDRRGIWCIFEGGTPDKRLDW 159
R D + W F+G +DW
Sbjct: 114 TENVLAVEVNPNNRNQEISGDYTIEAWTKFDFPGRGNTYSDFKWRWYHFDG------VDW 167
Query: 160 GPS-------FICRDDTTYSDGRGHPDSGE-PFGPAPDIDHLNPRVQKELSDWMNWLKTE 211
S + R D D ++G + D+D +P V EL W W
Sbjct: 168 DQSRQFQNRIYKFRGDGKAWDWEVDSENGNYDYLMYADVDMDHPEVVNELRRWGEWYTNT 227
Query: 212 IGFDGWRFDFVKGYAPSITRLYMKNTM-----PHFTVAEKW-DSLSYRQD--GKLDARQD 263
+ DG+R D VK S TR ++ + F VAE W + L ++ K +
Sbjct: 228 LNLDGFRIDAVKHIKYSFTRDWLTHVRNATGKEMFAVAEFWKNDLGALENYLNKTNWNHS 287
Query: 264 AHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWP 323
L Y + A + +D +L + P +AVTF+DNHD+ + L
Sbjct: 288 VFDVPLHYNLYNASNSGGNYDMAK--LLNGT---VVQKHPMHAVTFVDNHDSQPGESLES 342
Query: 324 FPSAKVM-LGYAYILT-HPGTPSIFY 347
F L YA ILT G PS+FY
Sbjct: 343 FVQEWFKPLAYALILTREQGYPSVFY 368
>pdb|1BPL|B Chain B, Glycosyltransferase
Length = 294
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 189 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYM-----KNTMPHFTV 243
DID+ +P V E+ W W E+ DG+R D VK S R ++ K FTV
Sbjct: 11 DIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWVNHVREKTGKEMFTV 70
Query: 244 AEKWDSLSYRQDGKLDARQDAHR---RNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIG 300
AE W + + L+ H L Y AA +D + +L + +
Sbjct: 71 AEYWQNDLGALENYLNKTNFNHSVFDVPLHYQFHAASTQGGGYDM--RKLLNST---VVS 125
Query: 301 LLPQNAVTFIDNHDTG------STQRLWPFPSAKVMLGYAYILT-HPGTPSIFYDHLF-- 351
P AVTF+DNHDT ST + W P L YA+ILT G P +FY ++
Sbjct: 126 KHPLKAVTFVDNHDTQPGQSLESTVQTWFKP-----LAYAFILTRESGYPQVFYGDMYGT 180
Query: 352 DWDLKKEIGKL 362
D ++EI L
Sbjct: 181 KGDSQREIPAL 191
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 138/345 (40%), Gaps = 72/345 (20%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGR 96
GG + + +I D + G+T +W+S P S+++ A AS GY R
Sbjct: 48 GGDWQGIINKINDGYLTDMGVTAIWISQ-------PVENVFSVMNDASGSASYHGYW-AR 99
Query: 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIW---------CI 147
+ +G+ ++ + L+ A + KGIK + D NH + + +
Sbjct: 100 DFKKPNPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTL 159
Query: 148 FEGGTPDKRL----DWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSD 203
G T D + + G +F +D Y + D++H NP + + L D
Sbjct: 160 LGGYTNDANMYFHHNGGTTFSSLEDGIYRN----------LFDLADLNHQNPVIDRYLKD 209
Query: 204 WMN-WLKTEIGFDGWRFDFVK----GYAPSITRLYMKNTMPHFTVAEKWDSLSYRQDGKL 258
+ W+ ++G DG R D VK G+ S+ + N P FT E W + + ++
Sbjct: 210 AVKMWI--DMGIDGIRMDAVKHMPFGWQKSLMD-EIDNYRPVFTFGE-W----FLSENEV 261
Query: 259 DARQDAHRRNLKYWVQAAGRAVTAFDFTTK----------------GILQAAPPGFIGLL 302
DA N Y+ +G ++ F F K ++Q + +L
Sbjct: 262 DA-------NNHYFANESGMSLLDFRFGQKLRQVLRNNSDNWYGFNQMIQDTASAYDEVL 314
Query: 303 PQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
Q VTFIDNHD P KV + A +LT G P+I+Y
Sbjct: 315 DQ--VTFIDNHDMDRFMIDGGDPR-KVDMALAVLLTSRGVPNIYY 356
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 108/252 (42%), Gaps = 22/252 (8%)
Query: 105 YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFI 164
+G + LK+LI ++KGI+ + D V NH E + +W + G K DW F
Sbjct: 219 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVW---KNGESSKYKDW---FH 272
Query: 165 CRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 224
+ ++ R + D+ P ++ NP V++ L D + E DGWR D
Sbjct: 273 IHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANE 332
Query: 225 YAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRN--LKYWVQAAG 277
R + +K P + + E W D++ + + + DA + + L+++ A
Sbjct: 333 IDHEFWREFRQEVKALKPDVYILGEIWHDAMPWLRGDQFDAVMNYPFTDGVLRFF---AK 389
Query: 278 RAVTAFDFTTK--GILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAY 335
++A F + +L + P + + A + +HDT + KV L + +
Sbjct: 390 EEISARQFANQMMHVLHSYPNN----VNEAAFNLLGSHDTSRILTVCGGDIRKVKLLFLF 445
Query: 336 ILTHPGTPSIFY 347
LT G+P I+Y
Sbjct: 446 QLTFTGSPCIYY 457
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 22/252 (8%)
Query: 105 YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFI 164
+G + LK+LI ++KGI+ + D V NH E + +W + G K DW F
Sbjct: 219 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVW---KNGESSKYKDW---FH 272
Query: 165 CRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 224
+ ++ R + D+ P ++ NP V++ L D + E DGWR D
Sbjct: 273 IHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANE 332
Query: 225 YAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRN--LKYWVQAAG 277
R + +K P + + + W D++ + + + DA + + L+++ A
Sbjct: 333 IDHEFWREFRQEVKALKPDVYILGQIWHDAMPWLRGDQFDAVMNYPFTDGVLRFF---AK 389
Query: 278 RAVTAFDFTTK--GILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAY 335
++A F + +L + P + + A + +HDT + KV L + +
Sbjct: 390 EEISARQFANQMMHVLHSYPNN----VNEAAFNLLGSHDTSRILTVCGGDIRKVKLLFLF 445
Query: 336 ILTHPGTPSIFY 347
LT G+P I+Y
Sbjct: 446 QLTFTGSPCIYY 457
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 73/174 (41%), Gaps = 25/174 (14%)
Query: 189 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK----GYAPS-ITRLYMKNTMPHFTV 243
D+D +P V EL W W DG+R D VK + P ++ + + P FTV
Sbjct: 203 DLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIKFSFFPDWLSYVRSQTGKPLFTV 262
Query: 244 AEKWD-------SLSYRQDGKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPP 296
E W + + +G + + DA N Y +G T +++
Sbjct: 263 GEYWSYDINKLHNYIMKTNGTM-SLFDAPLHNKFYTASKSGGTFDMRTLMTNTLMKDQ-- 319
Query: 297 GFIGLLPQNAVTFIDNHDTGSTQRL--WPFPSAKVMLGYAYILT-HPGTPSIFY 347
P AVTF+DNHDT Q L W P K L YA+ILT G P +FY
Sbjct: 320 ------PTLAVTFVDNHDTEPGQALQSWVDPWFKP-LAYAFILTRQEGYPCVFY 366
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 24/92 (26%)
Query: 51 DIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA-------- 102
+++S GIT +WL + S GY LYDL
Sbjct: 32 NLSSLGITALWLPPAYKGTSR----------------SDVGYGVYDLYDLGEFNQKGAVR 75
Query: 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHR 134
+ YG++ + IQA + G++ AD+V +H+
Sbjct: 76 TKYGTKAQYLQAIQAAHAAGMQVYADVVFDHK 107
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 110/252 (43%), Gaps = 22/252 (8%)
Query: 105 YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFI 164
+G + LK+L++ ++KGI+ + D V NH E + + + G + DW F
Sbjct: 219 FGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQD---VLKNGAASRYKDW---FH 272
Query: 165 CRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 224
R+ ++ R + D+ P ++ +P V++ L D + E DGWR D
Sbjct: 273 IREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVANE 332
Query: 225 YAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRN--LKYWVQAAG 277
R + +K P + + E W D++ + + + DA + + L+++ A
Sbjct: 333 IDHQFWREFRQAVKALKPDVYILGEIWHDAMPWLRGDQFDAVMNYPLADAALRFF---AK 389
Query: 278 RAVTAFDFTTK--GILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAY 335
++A +F + +L + P + + A + +HDT + KV L + +
Sbjct: 390 EDMSASEFADRLMHVLHSYPKQ----VNEAAFNLLGSHDTPRLLTVCGGDVRKVKLLFLF 445
Query: 336 ILTHPGTPSIFY 347
LT G+P I+Y
Sbjct: 446 QLTFTGSPCIYY 457
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 135/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + G D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LGDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 23/202 (11%)
Query: 29 GFNWESCNKK-----GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQA 83
G +CN GG + + ++ I G T +W++ + +L A
Sbjct: 24 GSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPV-----TAQLPQDCAYGDA 78
Query: 84 YSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRG 143
Y+ GY +Y L+ +YG+ ++LK+L A +++G+ + D+V NH +
Sbjct: 79 YT-----GYWQTDIYSLN-ENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSV 132
Query: 144 IWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDS--GEPFGPAPDIDHLNPRVQKEL 201
+ +F+ P D+ F + Y D D G+ PD+D V+ E
Sbjct: 133 DYSVFK---PFSSQDYFHPFCFIQN--YEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEW 187
Query: 202 SDWMNWLKTEIGFDGWRFDFVK 223
DW+ L + DG R D VK
Sbjct: 188 YDWVGSLVSNYSIDGLRIDTVK 209
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 109/252 (43%), Gaps = 22/252 (8%)
Query: 105 YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFI 164
+G + LK+L++ ++KGI+ + D V NH E + + + G + DW F
Sbjct: 219 FGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQD---VLKNGAASRYKDW---FH 272
Query: 165 CRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 224
R+ ++ R + D+ P ++ +P V++ L D + E DGWR D
Sbjct: 273 IREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVANE 332
Query: 225 YAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRN--LKYWVQAAG 277
R + +K P + + W D++ + + + DA + + L+++ A
Sbjct: 333 IDHQFWREFRQAVKALKPDVYILGLIWHDAMPWLRGDQFDAVMNYPLADAALRFF---AK 389
Query: 278 RAVTAFDFTTK--GILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAY 335
++A +F + +L + P + + A + +HDT + KV L + +
Sbjct: 390 EDMSASEFADRLMHVLHSYPKQ----VNEAAFNLLGSHDTPRLLTVCGGDVRKVKLLFLF 445
Query: 336 ILTHPGTPSIFY 347
LT G+P I+Y
Sbjct: 446 QLTFTGSPCIYY 457
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 127/351 (36%), Gaps = 79/351 (22%)
Query: 39 GGWYNFLKKRIPDIASAGITHVWLSSTF----SLCCSPRLFFHSIIHQAYSHASLAGYMP 94
GG +++++P + G+T +WLS +L + +H GY
Sbjct: 48 GGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYH-------------GYWT 94
Query: 95 GRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPD 154
R + +G+ +L+ ++ GIK + D V NH T K + EGG
Sbjct: 95 -RDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDS---TFAEGGALY 150
Query: 155 KRLDWGPSFICRDDTTYS-----------DGRGHPDSGEPFGPA----PDIDHLNPRVQK 199
+ ++ DD T D R PA D+ N + +
Sbjct: 151 NNGTYMGNYF--DDATKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQ 208
Query: 200 ELSDWMNWLKTEIGFDGWRFDFVK----GYAPSIT-RLYMKNTMPHFTVAEKWDSLSYRQ 254
L+D L G DG R D VK G++ S+ +LY K + F V E +
Sbjct: 209 YLTDAAVQLVAH-GADGLRIDAVKHFNSGFSKSLADKLYQKKDI--FLVGEWYGD----- 260
Query: 255 DGKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLL------------ 302
D H ++Y A V DF +++ F +
Sbjct: 261 ----DPGTANHLEKVRY---ANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGN 313
Query: 303 ----PQNAVTFIDNHDTGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+N +TFIDNHD R S K L A+ILT GTPSI+Y
Sbjct: 314 EYKYKENLITFIDNHDM---SRFLSVNSNKANLHQALAFILTSRGTPSIYY 361
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 23/202 (11%)
Query: 29 GFNWESCNKK-----GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQA 83
G +CN GG + + ++ I G T +W++ + +L + A
Sbjct: 24 GSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPV-----TAQLPQTTAYGDA 78
Query: 84 YSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRG 143
Y GY +Y L+ +YG+ ++LK+L A +++G+ + D+V NH +
Sbjct: 79 YH-----GYWQQDIYSLN-ENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSV 132
Query: 144 IWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDS--GEPFGPAPDIDHLNPRVQKEL 201
+ +F+ P D+ F + Y D D G+ PD+D V+ E
Sbjct: 133 DYSVFK---PFSSQDYFHPFCFIQN--YEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEW 187
Query: 202 SDWMNWLKTEIGFDGWRFDFVK 223
DW+ L + DG R D VK
Sbjct: 188 YDWVGSLVSNYSIDGLRIDTVK 209
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 131/331 (39%), Gaps = 49/331 (14%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGR 96
GG + L +I D + G+T +W+S F +I + ++ + GY R
Sbjct: 51 GGDWQGLINKINDNYFSDLGVTALWISQPV------ENIFATINYSGVTNTAYHGYW-AR 103
Query: 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRT-AEKKDRRGIWCIFEGGTPDK 155
+ +G+ + ++LI + KGIK + D NH + A+ ++ R +++ GT
Sbjct: 104 DFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPADAENGR----LYDNGT--- 156
Query: 156 RLDWGPSFICRDDTTYSDGRGHPDSGEPFGP-----------APDIDHLNPRVQKELSDW 204
+ T ++G H + G F D +H N + K D
Sbjct: 157 --------LVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDA 208
Query: 205 MN-WLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH---FTVAEKWDSLSYRQDGKLDA 260
+ WL ++G DG R D VK + +M + H FT E + + D
Sbjct: 209 IKLWL--DMGVDGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGEWFLGSAASDADNTDF 266
Query: 261 RQDAHRRNLKYWVQAAGRAV----TAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTG 316
+ L + +A R V T+ + ++ + + + Q VTFIDNHD
Sbjct: 267 ANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNHDM- 323
Query: 317 STQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
+ + ++ A+ LT G P+I+Y
Sbjct: 324 DRFKTSAVNNRRLEQALAFTLTSRGVPAIYY 354
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 134/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F +D Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSSYEDGIYRN----------LYDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 136/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y +G D D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIY---KGLYD-------LADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 134/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LYDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDVVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 134/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNLGTDFSTTENGIYKN----------LYDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 134/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LYDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 134/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LYDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 23/254 (9%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSF 163
+G ++ LK L+ +++GI+ L D V NH + + + G K DW F
Sbjct: 214 QFGDKDTLKKLVDLCHERGIRVLLDAVFNH---SGRTFPPFVDVLKNGEKSKYKDW---F 267
Query: 164 ICRD-DTTYSDGRGHPDS--GEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFD 220
R DG D+ EP P + +H P V++ L + E G DGWR D
Sbjct: 268 HIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEH--PDVKEYLLKAAEYWIRETGIDGWRLD 325
Query: 221 FVKGYAPSITRLY---MKNTMPH-FTVAEKWDSLSYRQDG-KLDARQDAHRRN--LKYWV 273
+ R + +K P + + E W S +G + DA + N L +++
Sbjct: 326 VANEVSHQFWREFRRVVKQANPDAYILGEVWHESSIWLEGDQFDAVMNYPFTNAVLDFFI 385
Query: 274 QAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGY 333
A F F +L G+ + +D+HDT K+ L
Sbjct: 386 HQIADA-EKFSF----MLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGDKRKMKLAV 440
Query: 334 AYILTHPGTPSIFY 347
+ T+ GTP I+Y
Sbjct: 441 LFQFTYFGTPCIYY 454
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 134/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LFDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 118/319 (36%), Gaps = 43/319 (13%)
Query: 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLY 98
GG + R+P + G+T ++ + F+ SP H Y A P
Sbjct: 169 GGDLKGVIDRLPYLEELGVTALYFTPIFA---SPS-------HHKYDTADYLAIDP---- 214
Query: 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLD 158
+G + L+ +++GIK + D V NH + R + + G + D
Sbjct: 215 -----QFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKD 266
Query: 159 WGPSFICRDDTTYSDGRGHPDSGEPFGPA-PDIDHLNPRVQKELSD----WMNWLKTEIG 213
W F D R + ++ PA P + NP V++ L D WM E G
Sbjct: 267 W---FFIEDFPVSKTSRTNYETAAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQG 318
Query: 214 FDGWRFDFVKGYAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRN 268
DGWR D + R + +K+ P V E W D+ + + D+ + R
Sbjct: 319 IDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRE 378
Query: 269 LKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAK 328
A G + A F + L A + Q +D+HDT AK
Sbjct: 379 SVIRFFATGE-IHAERFDAE--LTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAK 435
Query: 329 VMLGYAYILTHPGTPSIFY 347
L + +T+ GTP I+Y
Sbjct: 436 FRLAVLFQMTYLGTPLIYY 454
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 134/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LLDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 134/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LWDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 118/330 (35%), Gaps = 71/330 (21%)
Query: 52 IASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNEL 111
IA G+ +WL F SP S GY Y ++ YG+ +
Sbjct: 44 IADLGVNGIWLMPIFK---SP---------------SYHGYDVTDYYKINPD-YGTLEDF 84
Query: 112 KSLIQAFNKKGIKCLADIVINH--------------RTAEKKDRRGIWCIFEGGTPDKRL 157
L++A +++GIK + D+ INH + +E +D +W + T + +L
Sbjct: 85 HKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYY-VWAGPDTDTKETKL 143
Query: 158 DWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDG 216
D G + Y G+ SG PD+++ NP VQ+++ WLK G DG
Sbjct: 144 DGGRVWHYSPTGMYY---GYFWSG-----MPDLNYNNPEVQEKVIGIAKYWLKQ--GVDG 193
Query: 217 WRFDFVKGYAPSIT-----------RLYMKNTMPHFTVAEKWD-------SLSYRQDGKL 258
+R D P R ++ P + V E WD Y D
Sbjct: 194 FRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEVWDISETVAPYFKYGFDSTF 253
Query: 259 DARQDAHRRNLKYWVQAAGRAVTAFDFTTKGI-LQAAPPGFIGLLPQNAVTFIDNHDTGS 317
+ + L V A +A F F K + +G F+ NHD
Sbjct: 254 NFK-------LAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNR 306
Query: 318 TQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
K + + LT PG P I+Y
Sbjct: 307 ILDQLGQDRNKARVAASIYLTLPGNPFIYY 336
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 135/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSIIHQA-YSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII+ + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINDSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASPDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LYDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 115/310 (37%), Gaps = 43/310 (13%)
Query: 48 RIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS 107
R+P + G+T ++ + F+ SP H Y A P +G
Sbjct: 178 RLPYLEELGVTALYFTPIFA---SPS-------HHKYDTADYLAIDP---------QFGD 218
Query: 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRD 167
+ L+ +++GIK + D V NH + R + + G + DW F D
Sbjct: 219 LPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIED 272
Query: 168 DTTYSDGRGHPDSGEPFGPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFV 222
R + ++ PA P + NP V++ L D WM E G DGWR D
Sbjct: 273 FPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLDVA 327
Query: 223 KGYAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRNLKYWVQAAG 277
+ R + +K+ P V E W D+ + + D+ + R A G
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 278 RAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYIL 337
+ A F + L A + Q +D+HDT AK L + +
Sbjct: 388 E-IHAERFDAE--LTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQM 444
Query: 338 THPGTPSIFY 347
T+ GTP I+Y
Sbjct: 445 TYLGTPLIYY 454
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 115/310 (37%), Gaps = 43/310 (13%)
Query: 48 RIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS 107
R+P + G+T ++ + F+ SP H Y A P +G
Sbjct: 178 RLPYLEELGVTALYFTPIFA---SPS-------HHKYDTADYLAIDP---------QFGD 218
Query: 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRD 167
+ L+ +++GIK + D V NH + R + + G + DW F D
Sbjct: 219 LPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIED 272
Query: 168 DTTYSDGRGHPDSGEPFGPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFV 222
R + ++ PA P + NP V++ L D WM E G DGWR D
Sbjct: 273 FPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLDVA 327
Query: 223 KGYAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRNLKYWVQAAG 277
+ R + +K+ P V E W D+ + + D+ + R A G
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 278 RAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYIL 337
+ A F + L A + Q +D+HDT AK L + +
Sbjct: 388 E-IHAERFDAE--LTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQM 444
Query: 338 THPGTPSIFY 347
T+ GTP I+Y
Sbjct: 445 TYLGTPLIYY 454
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 115/310 (37%), Gaps = 43/310 (13%)
Query: 48 RIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS 107
R+P + G+T ++ + F+ SP H Y A P +G
Sbjct: 178 RLPYLEELGVTALYFTPIFA---SPS-------HHKYDTADYLAIDP---------QFGD 218
Query: 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRD 167
+ L+ +++GIK + D V NH + R + + G + DW F D
Sbjct: 219 LPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIED 272
Query: 168 DTTYSDGRGHPDSGEPFGPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFV 222
R + ++ PA P + NP V++ L D WM E G DGWR D
Sbjct: 273 FPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLDVA 327
Query: 223 KGYAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRNLKYWVQAAG 277
+ R + +K+ P V E W D+ + + D+ + R A G
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 278 RAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYIL 337
+ A F + L A + Q +D+HDT AK L + +
Sbjct: 388 E-IHAERFDAE--LTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQM 444
Query: 338 THPGTPSIFY 347
T+ GTP I+Y
Sbjct: 445 TYLGTPLIYY 454
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 115/310 (37%), Gaps = 43/310 (13%)
Query: 48 RIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS 107
R+P + G+T ++ + F+ SP H Y A P +G
Sbjct: 178 RLPYLEELGVTALYFTPIFA---SPS-------HHKYDTADYLAIDP---------QFGD 218
Query: 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRD 167
+ L+ +++GIK + D V NH + R + + G + DW F D
Sbjct: 219 LPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIED 272
Query: 168 DTTYSDGRGHPDSGEPFGPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFV 222
R + ++ PA P + NP V++ L D WM E G DGWR D
Sbjct: 273 FPVSKTSRTNYETYAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLDVA 327
Query: 223 KGYAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRNLKYWVQAAG 277
+ R + +K+ P V E W D+ + + D+ + R A G
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 278 RAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYIL 337
+ A F + L A + Q +D+HDT AK L + +
Sbjct: 388 E-IHAERFDAE--LTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQM 444
Query: 338 THPGTPSIFY 347
T+ GTP I+Y
Sbjct: 445 TYLGTPLIYY 454
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 115/310 (37%), Gaps = 43/310 (13%)
Query: 48 RIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS 107
R+P + G+T ++ + F+ SP H Y A P +G
Sbjct: 178 RLPYLEELGVTALYFTPIFA---SPS-------HHKYDTADYLAIDP---------QFGD 218
Query: 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRD 167
+ L+ +++GIK + D V NH + R + + G + DW F D
Sbjct: 219 LPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIED 272
Query: 168 DTTYSDGRGHPDSGEPFGPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFV 222
R + ++ PA P + NP V++ L D WM E G DGWR D
Sbjct: 273 FPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLDVA 327
Query: 223 KGYAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRNLKYWVQAAG 277
+ R + +K+ P V E W D+ + + D+ + R A G
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 278 RAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYIL 337
+ A F + L A + Q +D+HDT AK L + +
Sbjct: 388 E-IHAERFDAE--LTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQM 444
Query: 338 THPGTPSIFY 347
T+ GTP I+Y
Sbjct: 445 TYLGTPLIYY 454
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 134/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LYDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT + + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGQWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 134/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + + NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIINFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LYDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 92 YMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGG 151
+ P R Y + ++ G E ++++QAF+ GIK D+V NH TAE G W
Sbjct: 256 FSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNH-TAEG----GTWT----- 305
Query: 152 TPDKRLDWGPSFICRDDTTYSD-GRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKT 210
+ D S+ D+ TY + G+ + G + + N Q + D + +
Sbjct: 306 SSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWAN 365
Query: 211 EIGFDGWRFDFVK 223
+G DG+RFD
Sbjct: 366 TMGVDGFRFDLAS 378
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 129/331 (38%), Gaps = 43/331 (12%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGR 96
GG + L +I D + G+T +W+S F +I + ++ + GY R
Sbjct: 51 GGDWQGLINKINDNYFSDLGVTALWISQPV------ENIFATINYSGVTNTAYHGYW-AR 103
Query: 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRT-AEKKDRRGIWCIFEGGTPDK 155
+ +G+ + ++LI + KGIK + D NH + A + D E G +
Sbjct: 104 DFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDT----SFAENG---R 156
Query: 156 RLDWGPSFICRDDTTYSDGRGHPDSGEPFGP-----------APDIDHLNPRVQKELSDW 204
D G + T ++G H + G F D +H N + K D
Sbjct: 157 LYDNGT--LVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDA 214
Query: 205 MN-WLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH---FTVAEKWDSLSYRQDGKLDA 260
+ WL ++G DG R D VK + +M + H FT E + + D
Sbjct: 215 IKLWL--DMGVDGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGEWFLGSAASDADNTDF 272
Query: 261 RQDAHRRNLKYWVQAAGRAV----TAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTG 316
+ L + +A R V T+ + ++ + + + Q VTFIDNHD
Sbjct: 273 ANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNHDM- 329
Query: 317 STQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
+ + ++ A+ LT G P+I+Y
Sbjct: 330 DRFKTSAVNNRRLEQALAFTLTSRGVPAIYY 360
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 129/331 (38%), Gaps = 43/331 (12%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGR 96
GG + L +I D + G+T +W+S F +I + ++ + GY R
Sbjct: 51 GGDWQGLINKINDNYFSDLGVTALWISQPV------ENIFATINYSGVTNTAYHGYW-AR 103
Query: 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRT-AEKKDRRGIWCIFEGGTPDK 155
+ +G+ + ++LI + KGIK + D NH + A + D E G +
Sbjct: 104 DFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDT----SFAENG---R 156
Query: 156 RLDWGPSFICRDDTTYSDGRGHPDSGEPFGP-----------APDIDHLNPRVQKELSDW 204
D G + T ++G H + G F D +H N + K D
Sbjct: 157 LYDNGT--LVGGYTNDTNGYFHHNGGSDFSSLENGIYKNTYDLADFNHNNATIDKYFKDA 214
Query: 205 MN-WLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH---FTVAEKWDSLSYRQDGKLDA 260
+ WL ++G DG R D VK + +M + H FT E + + D
Sbjct: 215 IKLWL--DMGVDGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGEWFLGSAASDADNTDF 272
Query: 261 RQDAHRRNLKYWVQAAGRAV----TAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTG 316
+ L + +A R V T+ + ++ + + + Q VTFIDNHD
Sbjct: 273 ANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNHDM- 329
Query: 317 STQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
+ + ++ A+ LT G P+I+Y
Sbjct: 330 DRFKTSAVNNRRLEQALAFTLTSRGVPAIYY 360
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 115/310 (37%), Gaps = 43/310 (13%)
Query: 48 RIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS 107
R+P + G+T ++ + F+ SP H Y A P +G
Sbjct: 178 RLPYLEELGVTALYFTPIFA---SPS-------HHKYDTADYLAIDP---------QFGD 218
Query: 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRD 167
+ L+ +++GIK + D V NH + R + + G + DW F D
Sbjct: 219 LPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIED 272
Query: 168 DTTYSDGRGHPDSGEPFGPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFV 222
R + ++ PA P + NP V++ L D WM E G DGWR +
Sbjct: 273 FPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLNVA 327
Query: 223 KGYAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRNLKYWVQAAG 277
+ R + +K+ P V E W D+ + + D+ + R A G
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 278 RAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYIL 337
+ A F + L A + Q +D+HDT AK L + +
Sbjct: 388 E-IHAERFDAE--LTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQM 444
Query: 338 THPGTPSIFY 347
T+ GTP I+Y
Sbjct: 445 TYLGTPLIYY 454
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 134/335 (40%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LYDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R + VK + +M N P FT + + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMNAVKHMPFGWQKSFMAAVNNYKPVFTFGQWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 133/335 (39%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIAFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LYDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R D VK + +M N P FT E + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 128/338 (37%), Gaps = 57/338 (16%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + GIT +W+S P +S+I + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGITAIWISQ-------PVENIYSVINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + K+LI + IK + D NH + D
Sbjct: 103 RDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGN 162
Query: 147 IFEGGTPDKRLDW----GPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHYGGTDFSTIENGIYKN----------LYDLADLNHNNSSVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYRQDGKL 258
D + WL ++G DG R D VK + +M N P FT E + ++
Sbjct: 213 DAIKMWL--DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYH 270
Query: 259 DARQDAHRRNLKYWVQAAGRAV----TAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
++ L Y R V T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 QFANESGMSLLDYRFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ--VTFIDNHD 328
Query: 315 -----TGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
T + R K+ A+ LT G P+I+Y
Sbjct: 329 MERFHTSNGDR------RKLEQALAFTLTSRGVPAIYY 360
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 114/310 (36%), Gaps = 43/310 (13%)
Query: 48 RIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS 107
R+P + G+T ++ + F+ SP H Y A P +G
Sbjct: 178 RLPYLEELGVTALYFTPIFA---SPS-------HHKYDTADYLAIDP---------QFGD 218
Query: 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRD 167
+ L+ +++GIK + D V NH + R + + G + DW F D
Sbjct: 219 LPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIED 272
Query: 168 DTTYSDGRGHPDSGEPFGPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFV 222
R + ++ PA P + NP V++ L D WM E G DGWR D
Sbjct: 273 FPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLDVA 327
Query: 223 KGYAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRNLKYWVQAAG 277
+ R + +K+ P V W D+ + + D+ + R A G
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGAIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 278 RAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYIL 337
+ A F + L A + Q +D+HDT AK L + +
Sbjct: 388 E-IHAERFDAE--LTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAVLFQM 444
Query: 338 THPGTPSIFY 347
T+ GTP I+Y
Sbjct: 445 TYLGTPLIYY 454
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 57/338 (16%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + GIT +W+S P +S+I + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGITAIWISQ-------PVENIYSVINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + K+LI + IK + D NH + D
Sbjct: 103 RDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGN 162
Query: 147 IFEGGTPDKRLDW----GPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHYGGTDFSTIENGIYKN----------LYDLADLNHNNSSVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYRQDGKL 258
D + WL ++G DG R D VK + +M N P FT E + ++
Sbjct: 213 DAIKMWL--DLGVDGIRVDAVKNMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYH 270
Query: 259 DARQDAHRRNLKYWVQAAGRAV----TAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
++ L + R V T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 QFANESGMSLLDFRFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ--VTFIDNHD 328
Query: 315 -----TGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
T + R K+ A+ LT G P+I+Y
Sbjct: 329 MERFHTSNGDR------RKLEQALAFTLTSRGVPAIYY 360
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 128/331 (38%), Gaps = 43/331 (12%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGR 96
GG + L +I D + G+T +W+S F +I + ++ + GY R
Sbjct: 51 GGDWQGLINKINDNYFSDLGVTALWISQPV------ENIFATINYSGVTNTAYHGYW-AR 103
Query: 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRT-AEKKDRRGIWCIFEGGTPDK 155
+ +G+ + ++LI + KGIK + D NH + A + D E G +
Sbjct: 104 DFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDT----SFAENG---R 156
Query: 156 RLDWGPSFICRDDTTYSDGRGHPDSGEPFGP-----------APDIDHLNPRVQKELSDW 204
D G + T ++G H + G F D +H N + K D
Sbjct: 157 LYDNGT--LVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDA 214
Query: 205 MN-WLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH---FTVAEKWDSLSYRQDGKLDA 260
+ WL ++G DG R D VK + +M + H FT + + D
Sbjct: 215 IKLWL--DMGVDGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGAWFLGSAASDADNTDF 272
Query: 261 RQDAHRRNLKYWVQAAGRAV----TAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTG 316
+ L + +A R V T+ + ++ + + + Q VTFIDNHD
Sbjct: 273 ANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNHDM- 329
Query: 317 STQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
+ + ++ A+ LT G P+I+Y
Sbjct: 330 DRFKTSAVNNRRLEQALAFTLTSRGVPAIYY 360
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 115/310 (37%), Gaps = 43/310 (13%)
Query: 48 RIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS 107
R+P + G+T ++ + F+ SP H Y A P +G
Sbjct: 178 RLPYLEELGVTALYFTPIFA---SPS-------HHKYDTADYLAIDP---------QFGD 218
Query: 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRD 167
+ L+ +++GIK + D V NH + R + + G + DW F D
Sbjct: 219 LPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRD---VLQKGEQSRYKDW---FFIED 272
Query: 168 DTTYSDGRGHPDSGEPFGPA-PDIDHLNPRVQKELSD----WMNWLKTEIGFDGWRFDFV 222
R + ++ PA P + NP V++ L D WM E G DGWR +
Sbjct: 273 FPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-----EQGIDGWRLNVA 327
Query: 223 KGYAPSITRLY---MKNTMPH-FTVAEKW-DSLSYRQDGKLDARQDAHRRNLKYWVQAAG 277
+ R + +K+ P V E W D+ + + D+ + R A G
Sbjct: 328 NEVDHAFWREFRRLVKSLNPDALIVGEIWHDASGWLMGDQFDSVMNYLFRESVIRFFATG 387
Query: 278 RAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYIL 337
+ A F + L A + Q +D+H+T AK L + +
Sbjct: 388 E-IHAERFDAE--LTRARMLYPEQAAQGLWNLLDSHNTERFLTSCGGNEAKFRLAVLFQM 444
Query: 338 THPGTPSIFY 347
T+ GTP I+Y
Sbjct: 445 TYLGTPLIYY 454
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 128/331 (38%), Gaps = 43/331 (12%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGR 96
GG + L +I D + G+T +W+S F +I + ++ + GY R
Sbjct: 51 GGDWQGLINKINDNYFSDLGVTALWISQPV------ENIFATINYSGVTNTAYHGYW-AR 103
Query: 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRT-AEKKDRRGIWCIFEGGTPDK 155
+ +G+ + ++LI + KGIK + D NH + A + D E G +
Sbjct: 104 DFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDT----SFAENG---R 156
Query: 156 RLDWGPSFICRDDTTYSDGRGHPDSGEPFGP-----------APDIDHLNPRVQKELSDW 204
D G + T ++G H + G F D +H N + K D
Sbjct: 157 LYDNGT--LVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDA 214
Query: 205 MN-WLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH---FTVAEKWDSLSYRQDGKLDA 260
+ WL ++G DG R VK + +M + H FT E + + D
Sbjct: 215 IKLWL--DMGVDGIRVAAVKHMPLGWQKSWMSSIYAHKPVFTFGEWFLGSAASDADNTDF 272
Query: 261 RQDAHRRNLKYWVQAAGRAV----TAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTG 316
+ L + +A R V T+ + ++ + + + Q VTFIDNHD
Sbjct: 273 ANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ--VTFIDNHDM- 329
Query: 317 STQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
+ + ++ A+ LT G P+I+Y
Sbjct: 330 DRFKTSAVNNRRLEQALAFTLTSRGVPAIYY 360
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 57/338 (16%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + GIT +W+S P +S+I + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGITAIWISQ-------PVENIYSVINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + K+LI + IK + D NH + D
Sbjct: 103 RDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGN 162
Query: 147 IFEGGTPDKRLDW----GPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHYGGTDFSTIENGIYKN----------LYDLADLNHNNSSVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYRQDGKL 258
D + WL ++G DG R D VK + +M N P FT E + ++
Sbjct: 213 DAIKMWL--DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEYH 270
Query: 259 DARQDAHRRNLKYWVQAAGRAV----TAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
++ L + R V T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 QFANESGMSLLDFRFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ--VTFIDNHD 328
Query: 315 -----TGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
T + R K+ A+ LT G P+I+Y
Sbjct: 329 MERFHTSNGDR------RKLEQALAFTLTSRGVPAIYY 360
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 128/339 (37%), Gaps = 59/339 (17%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGY--MP 94
GG + + +I D + GIT +W+S P +S+I+ YS + Y +
Sbjct: 51 GGDWQGIINKINDGYLTGMGITAIWISQ-------PVENIYSVIN--YSGVNNTAYHGLW 101
Query: 95 GRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------W 145
R + +YG+ + K+LI + IK + D NH + D
Sbjct: 102 ARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNG 161
Query: 146 CIFEGGTPDKRLDW----GPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKEL 201
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 162 NLLGGYTNDTQNLFHHYGGTDFSTIENGIYKN----------LYDLADLNHNNSSVDVYL 211
Query: 202 SDWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYRQDGK 257
D + WL ++G DG R D VK + +M N P FT E + ++
Sbjct: 212 KDAIKMWL--DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVNEISPEY 269
Query: 258 LDARQDAHRRNLKYWVQAAGRAV----TAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNH 313
++ L + R V T + K +L+ + + + Q VTFIDNH
Sbjct: 270 HQFANESGMSLLDFRFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ--VTFIDNH 327
Query: 314 D-----TGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
D T + R K+ A+ LT G P+I+Y
Sbjct: 328 DMERFHTSNGDR------RKLEQALAFTLTSRGVPAIYY 360
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 132/335 (39%), Gaps = 51/335 (15%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + G+T +W+S P +SII + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGVTAIWISQ-------PVENIYSIINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + ++LI A + K IK + D NH + D+
Sbjct: 103 RDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGT 162
Query: 147 IFEGGTPDKR----LDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHNGGTDFSTTENGIYKN----------LYDLADLNHNNSTVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYR--QDG 256
D + WL ++G DG R VK + +M N P FT + ++ ++
Sbjct: 213 DAIKMWL--DLGIDGIRMAAVKHMPFGWQKSFMAAVNNYKPVFTFGAWFLGVNEVSPENH 270
Query: 257 KLDARQDAHRRNLKYW--VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD 314
K + ++ V+ R T + K +L+ + + + Q VTFIDNHD
Sbjct: 271 KFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ--VTFIDNHD 328
Query: 315 TGSTQRLWPFPSAKVML--GYAYILTHPGTPSIFY 347
+R + + L A+ LT G P+I+Y
Sbjct: 329 ---MERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 133/341 (39%), Gaps = 63/341 (18%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + GIT +W+S P +S+I + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGITAIWISQ-------PVENIYSVINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI---------WC 146
R + +YG+ + K+LI + IK + D NH + D
Sbjct: 103 RDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGN 162
Query: 147 IFEGGTPDKRLDW----GPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELS 202
+ G T D + + G F ++ Y + D++H N V L
Sbjct: 163 LLGGYTNDTQNLFHHYGGTDFSTIENGIYKN----------LYDLADLNHNNSSVDVYLK 212
Query: 203 DWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYRQDGKL 258
D + WL ++G DG R D VK + +M N P FT E + ++ +
Sbjct: 213 DAIKMWL--DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGVN---EISP 267
Query: 259 DARQDAHRRNLKYW-VQAAGRAVTAFDFTT------KGILQAAPPGFIGLLPQNAVTFID 311
+ Q A+ + ++ A +A F T K +L+ + + + Q VTFID
Sbjct: 268 EYHQFANESGMSLLDLRFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ--VTFID 325
Query: 312 NHD-----TGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
NHD T + R K+ A+ LT G P+I+Y
Sbjct: 326 NHDMERFHTSNGDR------RKLEQALAFTLTSRGVPAIYY 360
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 127/333 (38%), Gaps = 47/333 (14%)
Query: 39 GGWYNFLKKRIPD--IASAGITHVWLSSTFSLCCSPRLFFHSII-HQAYSHASLAGYMPG 95
GG + + +I D + GIT +W+S P +S+I + ++ + GY
Sbjct: 51 GGDWQGIINKINDGYLTGMGITAIWISQ-------PVENIYSVINYSGVNNTAYHGYW-A 102
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKD--------RRGIWCI 147
R + +YG+ + K+LI + IK + D NH + D R
Sbjct: 103 RDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGN 162
Query: 148 FEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMN- 206
GG + + + D +T +G + D++H N V L D +
Sbjct: 163 LLGGYTNDTQNLFHHYGGTDLSTIENG-----IYKNLYDLADLNHNNSSVDVYLKDAIKM 217
Query: 207 WLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMPHFTVAEKWDSLSYRQDGKLDARQD 263
WL ++G DG R D VK + +M N P FT E ++ +
Sbjct: 218 WL--DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWLLGVNEISPEYHQFANE 275
Query: 264 AHRRNLKYWVQAAGRAV----TAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD----- 314
+ L + R V T + K +L+ + + + Q VTFIDNHD
Sbjct: 276 SGMSLLDFRFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ--VTFIDNHDMERFH 333
Query: 315 TGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
T + R K+ A+ LT G P+I+Y
Sbjct: 334 TSNGDR------RKLEQALAFTLTSRGVPAIYY 360
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 79/211 (37%), Gaps = 31/211 (14%)
Query: 46 KKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSY 105
++ I + GIT V L F R + + + + + P Y
Sbjct: 205 EQMISYLKDLGITTVELMPVFHFI-DQRFLTDKGLTNYWGYDPINFFSPECRYSSTGCLG 263
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFIC 165
G K ++ + GI+ + D+V NH TAE GP+
Sbjct: 264 GQVLSFKKMVNELHNAGIEVIIDVVYNH-TAEGNH------------------LGPTLSF 304
Query: 166 R--DDTTYSDGRGHPDSGEPF----GPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 219
R D+T Y PD+ + G ++ +PRV + + D + + TE+ DG+RF
Sbjct: 305 RGIDNTAYY--MLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRF 362
Query: 220 DFVKGYAPSITRLYMKNTMPHFTVAEKWDSL 250
D A LY N + F +A + D +
Sbjct: 363 DLAAALA---RELYSVNMLNTFFIALQQDPI 390
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 79/217 (36%), Gaps = 46/217 (21%)
Query: 43 NFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH- 101
N+LK+ GIT + L PRL Q ++ GY P ++ LH
Sbjct: 186 NYLKQ-------LGITALELLPVAQFASEPRL-------QRMGLSNYWGYNPVAMFALHP 231
Query: 102 ---ASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLD 158
S + +E + I+A +K GI+ + DIV+NH D
Sbjct: 232 AYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLD------------------ 273
Query: 159 WGPSFICR--DDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 216
GP F R D+ +Y R D G ++ +P V S + + DG
Sbjct: 274 -GPLFSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDG 332
Query: 217 WRFDF--VKGYAPSITRLYMKNTMPHFTVAEKWDSLS 251
+RFD V G P + P FT + LS
Sbjct: 333 FRFDLAAVMGRTPE-----FRQDAPLFTAIQNCPVLS 364
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 32/164 (19%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSF 163
YG+ + SL+ K+ ++ + D+VINH + + W I DK + +
Sbjct: 88 EYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHP-----WFI--QSKSDKNNPYRDYY 140
Query: 164 ICRDDTTYSDGRGHPD------------SGEPF-----GPAPDIDHLNPRVQKELSDWMN 206
RD +P SG+ + PD++ NP+V+++L +
Sbjct: 141 FWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAMLR 200
Query: 207 -WLKTEIGFDGWRFDFVKGYA-----PSITRLYMKNTMPHFTVA 244
WL + G G RFD V Y+ P++T KN +T+
Sbjct: 201 FWL--DKGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMG 242
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 28/196 (14%)
Query: 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLY 98
GG + + + I G T +W+S + +L + +AY GY ++Y
Sbjct: 39 GGSWQGIIDHLDYIEGMGFTAIWISPI-----TEQLPQDTADGEAYH-----GYWQQKIY 88
Query: 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRL- 157
D++ S++G+ + LKSL A + +G+ + D+V +H + +F+
Sbjct: 89 DVN-SNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFH 147
Query: 158 ------DWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTE 211
DW + D G+ PD+D V+ DW+ L +
Sbjct: 148 PYCLITDWDNLTMVEDCW----------EGDTIVSLPDLDTTETAVRTIWYDWVADLVSN 197
Query: 212 IGFDGWRFDFVKGYAP 227
DG R D V P
Sbjct: 198 YSVDGLRIDSVLEVQP 213
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 33/140 (23%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDK-RLDWGPS 162
+G+ ++ L+ +++G+K + D+VINH + E W I + D + DW
Sbjct: 74 EFGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHP-----WFIESRSSRDNPKRDW--- 125
Query: 163 FICRDDTTYSDGRGHPDSGEPFGPA--------------------PDIDHLNPRVQKELS 202
+I RD DGR + FG + PD++ N V++ L
Sbjct: 126 YIWRDG---KDGREPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPDLNWENSEVRQALY 182
Query: 203 DWMNWLKTEIGFDGWRFDFV 222
+ +NW + G DG+R D +
Sbjct: 183 EMVNWW-LDKGIDGFRIDAI 201
>pdb|1BPL|A Chain A, Glycosyltransferase
Length = 189
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 25/115 (21%)
Query: 28 QGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA 87
Q F W N W L+ +A GIT VW+ + +
Sbjct: 9 QYFEWYMPNDGQHW-KRLQNDSAYLAEHGITAVWIPPAYKGTSQADV------------- 54
Query: 88 SLAGYMPGRLYDLHA--------SSYGSQNELKSLIQAFNKKGIKCLADIVINHR 134
GY LYDL + YG++ EL+S I++ + + I D+VINH+
Sbjct: 55 ---GYGAYDLYDLGEFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHK 106
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 34/171 (19%)
Query: 96 RLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINH---------RTAEKKDR--RGI 144
R Y YG+ + LI K+ ++ + D+VINH ++ KD RG
Sbjct: 66 RDYRKIMKEYGTMEDFDRLISEMKKRNMRLMIDVVINHTSDQNEWFVKSKSSKDNPYRGY 125
Query: 145 WC---IFEGGTPDKRLDWGPSFIC----RDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRV 197
+ EG P+ PSF + D + H + + PD++ NP+V
Sbjct: 126 YFWKDAKEGQAPNNY----PSFFGGSAWQKDEKTNQYYLHYFAKQ----QPDLNWDNPKV 177
Query: 198 QKELSDWMN-WLKTEIGFDGWRFDFVKGYA-----PSITRLYMKNTMPHFT 242
+++L + WL + G G RFD V Y+ P++T+ +KN +T
Sbjct: 178 RQDLYAMLRFWL--DKGVSGLRFDTVATYSKIPDFPNLTQQQLKNFAAEYT 226
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 28/160 (17%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRT----------AEKKDRRGIWCIFEGGTP 153
YG+ + L+ K+G++ + D+VINH + A K + + + G
Sbjct: 102 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 161
Query: 154 DKRLDWGPSFICRDDTTYSDGRGHPDSGE----PFG-PAPDIDHLNPRVQKELSDWMN-W 207
+ PSF S P +G+ FG PD++ P++++EL + W
Sbjct: 162 GHEPNNYPSFFGG-----SAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFW 216
Query: 208 LKTEIGFDGWRFDFVKGYA-----PSITRLYMKNTMPHFT 242
L + G G RFD V Y+ P +T MKN +T
Sbjct: 217 L--DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYT 254
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 28/160 (17%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRT----------AEKKDRRGIWCIFEGGTP 153
YG+ + L+ K+G++ + D+VINH + A K + + + G
Sbjct: 74 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 133
Query: 154 DKRLDWGPSFICRDDTTYSDGRGHPDSGE----PFG-PAPDIDHLNPRVQKELSDWMN-W 207
+ PSF S P +G+ FG PD++ P++++EL + W
Sbjct: 134 GHEPNNYPSFFGG-----SAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFW 188
Query: 208 LKTEIGFDGWRFDFVKGYA-----PSITRLYMKNTMPHFT 242
L + G G RFD V Y+ P +T MKN +T
Sbjct: 189 L--DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYT 226
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 28/160 (17%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRT----------AEKKDRRGIWCIFEGGTP 153
YG+ + L+ K+G++ + D+VINH + A K + + + G
Sbjct: 74 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 133
Query: 154 DKRLDWGPSFICRDDTTYSDGRGHPDSGE----PFG-PAPDIDHLNPRVQKELSDWMN-W 207
+ PSF S P +G+ FG PD++ P++++EL + W
Sbjct: 134 GHEPNNYPSFFGG-----SAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFW 188
Query: 208 LKTEIGFDGWRFDFVKGYA-----PSITRLYMKNTMPHFT 242
L + G G RFD V Y+ P +T MKN +T
Sbjct: 189 L--DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYT 226
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 28/160 (17%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRT----------AEKKDRRGIWCIFEGGTP 153
YG+ + L+ K+G++ + D+VINH + A K + + + G
Sbjct: 75 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 134
Query: 154 DKRLDWGPSFICRDDTTYSDGRGHPDSGE----PFG-PAPDIDHLNPRVQKELSDWMN-W 207
+ PSF S P +G+ FG PD++ P++++EL + W
Sbjct: 135 GHEPNNYPSFFGG-----SAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFW 189
Query: 208 LKTEIGFDGWRFDFVKGYA-----PSITRLYMKNTMPHFT 242
L + G G RFD V Y+ P +T MKN +T
Sbjct: 190 L--DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYT 227
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 28/160 (17%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRT----------AEKKDRRGIWCIFEGGTP 153
YG+ + L+ K+G++ + D+VINH + A K + + + G
Sbjct: 75 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 134
Query: 154 DKRLDWGPSFICRDDTTYSDGRGHPDSGE----PFG-PAPDIDHLNPRVQKELSDWMN-W 207
+ PSF S P +G+ FG PD++ P++++EL + W
Sbjct: 135 GHEPNNYPSFFGG-----SAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFW 189
Query: 208 LKTEIGFDGWRFDFVKGYA-----PSITRLYMKNTMPHFT 242
L + G G RFD V Y+ P +T MKN +T
Sbjct: 190 L--DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYT 227
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 28/160 (17%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRT----------AEKKDRRGIWCIFEGGTP 153
YG+ + L+ K+G++ + D+VINH + A K + + + G
Sbjct: 75 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 134
Query: 154 DKRLDWGPSFICRDDTTYSDGRGHPDSGEPF-----GPAPDIDHLNPRVQKELSDWMN-W 207
+ PSF S P +G+ + PD++ P++++EL + W
Sbjct: 135 GHEPNNYPSFFGG-----SAWEKDPVTGQYYLHYLGRQQPDLNWDTPKLREELYAMLRFW 189
Query: 208 LKTEIGFDGWRFDFVKGYA-----PSITRLYMKNTMPHFT 242
L + G G RFD V Y+ P +T MKN +T
Sbjct: 190 L--DKGVSGMRFDTVATYSKTPGFPDLTPEQMKNFAEAYT 227
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 22/129 (17%)
Query: 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRD 167
+ ELK +I ++ G++ + D+V NH + FE P + R
Sbjct: 315 KTELKQMINTLHQHGLRVILDVVFNHVYKRENSP------FEKTV--------PGYFFRH 360
Query: 168 DTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 227
D G P +G G DI +K ++D + + E DG+RFD + G
Sbjct: 361 DEC-----GKPSNGT--GVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLL-GILD 412
Query: 228 SITRLYMKN 236
T LYMK
Sbjct: 413 IDTVLYMKE 421
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 102/272 (37%), Gaps = 53/272 (19%)
Query: 105 YGSQNELKSLIQAFNKKGIKCLADIVINHR--------TAEKKDRRGIWCIFEGGTPDKR 156
+GS + ++LI + IK + D NH T + R GG +
Sbjct: 113 FGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDT 172
Query: 157 LDWGPSFICRDDTTYSDG--RGHPDSGEPFGPAPDIDHLNPRVQKELSDWMN-WLKTEIG 213
+ + D ++Y DG R D D++ N + L + WL ++G
Sbjct: 173 NGYFHHYGGTDFSSYEDGIYRNLFD-------LADLNQQNSTIDSYLKSAIKVWL--DMG 223
Query: 214 FDGWRFDFVKGYAPSITRLYMKNTM---PHFTVAEKWDSLSYRQDGKLDARQDAHRRNLK 270
DG R D VK + +M + + P FT E W + ++D N
Sbjct: 224 IDGIRLDAVKHMPFGWQKNFMDSILSYRPVFTFGE-W----FLGTNEIDV-------NNT 271
Query: 271 YWVQAAGRAVTAFDFTTK--GILQAAPPGFIGL------------LPQNAVTFIDNHDTG 316
Y+ +G ++ F F+ K + + GL + VTFIDNHD
Sbjct: 272 YFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFINDMVTFIDNHD-- 329
Query: 317 STQRLWPFPSAK-VMLGYAYILTHPGTPSIFY 347
R + S + V A+ LT G P+I+Y
Sbjct: 330 -MDRFYNGGSTRPVEQALAFTLTSRGVPAIYY 360
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 102/272 (37%), Gaps = 53/272 (19%)
Query: 105 YGSQNELKSLIQAFNKKGIKCLADIVINHR--------TAEKKDRRGIWCIFEGGTPDKR 156
+GS + ++LI + IK + D NH T + R GG +
Sbjct: 113 FGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDT 172
Query: 157 LDWGPSFICRDDTTYSDG--RGHPDSGEPFGPAPDIDHLNPRVQKELSDWMN-WLKTEIG 213
+ + D ++Y DG R D D++ N + L + WL ++G
Sbjct: 173 NGYFHHYGGTDFSSYEDGIYRNLFD-------LADLNQQNSTIDSYLKSAIKVWL--DMG 223
Query: 214 FDGWRFDFVKGYAPSITRLYMKNTM---PHFTVAEKWDSLSYRQDGKLDARQDAHRRNLK 270
DG R D VK + +M + + P FT E W + ++D N
Sbjct: 224 IDGIRLDAVKHMPFGWQKNFMDSILSYRPVFTFGE-W----FLGTNEIDV-------NNT 271
Query: 271 YWVQAAGRAVTAFDFTTK--GILQAAPPGFIGL------------LPQNAVTFIDNHDTG 316
Y+ +G ++ F F+ K + + GL + VTFIDNHD
Sbjct: 272 YFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFINDMVTFIDNHD-- 329
Query: 317 STQRLWPFPSAK-VMLGYAYILTHPGTPSIFY 347
R + S + V A+ LT G P+I+Y
Sbjct: 330 -MDRFYNGGSTRPVEQALAFTLTSRGVPAIYY 360
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 125/359 (34%), Gaps = 84/359 (23%)
Query: 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLA--GYMPGRL 97
G + +++ + G+TH+ L S L H + S S GY P
Sbjct: 177 GTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNY 236
Query: 98 YDLHASSYGSQ--------NELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFE 149
+ L Y S E K+LI +K+G+ + D+V NH K D +FE
Sbjct: 237 FSL-TGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNH--TAKVD------LFE 287
Query: 150 GGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLK 209
D P++ + D G P + G H+ R+ L D + +L
Sbjct: 288 --------DLEPNYYH-----FMDADGTPRTSFGGGRLGTTHHMTKRL---LIDSIKYLV 331
Query: 210 TEIGFDGWRFDFVKGY-APSITRLY--MKNTMPHF-TVAEKWDSLSYRQDGKLDAR---- 261
DG+RFD + + A SI Y + P+ + E W +Y D + +
Sbjct: 332 DTYKVDGFRFDMMGDHDAASIEEAYKAARALNPNLIMLGEGW--RTYAGDENMPTKAADQ 389
Query: 262 ------------QDAHRRNLKYWVQAAGRAVTAFDFTTKGI---------LQAAPPGFIG 300
D R NLK G+ F T G L A P F
Sbjct: 390 DWMKHTDTVAVFSDDIRNNLKSGYPNEGQPA----FITGGKRDVNTIFKNLIAQPTNFEA 445
Query: 301 LLPQNAVTFIDNHDTGS-----TQRLWPFPSA---------KVMLGYAYILTHPGTPSI 345
P + + +I HD + Q + PS ++ LG +LT GTP I
Sbjct: 446 DSPGDVIQYIAAHDNLTLFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFI 504
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 77/205 (37%), Gaps = 36/205 (17%)
Query: 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLA--GYMPGRL 97
G + +++ + G+TH+ L S L H + S S GY P
Sbjct: 178 GTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNY 237
Query: 98 YDLHASSYGSQ--------NELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFE 149
+ L Y S E K+LI +K+G+ + D+V NH K D +FE
Sbjct: 238 FSL-TGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNH--TAKVD------LFE 288
Query: 150 GGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLK 209
D P++ + D G P + G H+ R+ L D + +L
Sbjct: 289 --------DLEPNYYH-----FMDADGTPRTSFGGGRLGTTHHMTKRL---LIDSIKYLV 332
Query: 210 TEIGFDGWRFDFVKGY-APSITRLY 233
DG+RFD + + A SI Y
Sbjct: 333 DTYKVDGFRFDMMGDHDAASIEEAY 357
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 125/359 (34%), Gaps = 84/359 (23%)
Query: 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLA--GYMPGRL 97
G + +++ + G+TH+ L S L H + S S GY P
Sbjct: 484 GTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNY 543
Query: 98 YDLHASSYGSQ--------NELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFE 149
+ L Y S E K+LI +K+G+ + D+V NH K D +FE
Sbjct: 544 FSL-TGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNH--TAKVD------LFE 594
Query: 150 GGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLK 209
D P++ + D G P + G H+ R+ L D + +L
Sbjct: 595 --------DLEPNYYH-----FMDADGTPRTSFGGGRLGTTHHMTKRL---LIDSIKYLV 638
Query: 210 TEIGFDGWRFDFVKGY-APSITRLY--MKNTMPHF-TVAEKWDSLSYRQDGKLDAR---- 261
DG+RFD + + A SI Y + P+ + E W +Y D + +
Sbjct: 639 DTYKVDGFRFDMMGDHDAASIEEAYKAARALNPNLIMLGEGW--RTYAGDENMPTKAADQ 696
Query: 262 ------------QDAHRRNLKYWVQAAGRAVTAFDFTTKGI---------LQAAPPGFIG 300
D R NLK G+ F T G L A P F
Sbjct: 697 DWMKHTDTVAVFSDDIRNNLKSGYPNEGQPA----FITGGKRDVNTIFKNLIAQPTNFEA 752
Query: 301 LLPQNAVTFIDNHDTGS-----TQRLWPFPSA---------KVMLGYAYILTHPGTPSI 345
P + + +I HD + Q + PS ++ LG +LT GTP I
Sbjct: 753 DSPGDVIQYIAAHDNLTLFDIIAQSIKKDPSKAENYAEIHRRLRLGNLMVLTAQGTPFI 811
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 98/276 (35%), Gaps = 53/276 (19%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWC---IFEGGTPDKRLDWG-- 160
G K L+ A +++ IK + D V NH + RG + + E G ++W
Sbjct: 100 GGNEAFKELLDAAHQRNIKVVLDGVFNHSS------RGFFFFHDVLENGPHSPWVNWFKI 153
Query: 161 -----PSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQK---ELSDWMNWLKTEI 212
+ Y G+ P+ +H NP V++ E++++ WLK
Sbjct: 154 EGWPLSPYNGEFPANYVGWAGN-------RALPEFNHDNPEVREYIMEIAEY--WLK--F 202
Query: 213 GFDGWRFDF-VKGYAPSITRLYMKNTM----PHFTVAEKW-DSLSYRQDGKLDARQDAHR 266
G DGWR D + P + + T + V E W DS + + D +
Sbjct: 203 GIDGWRLDVPFEIKTPGFWQEFRDRTKAINPEAYIVGEVWGDSRQWLDGTQFDGVMNYLF 262
Query: 267 RNLKYWVQAAGRAVTAFDFTTKGILQAAPPGF-----------IGLLP----QNAVTFID 311
A R V + Q PP F + L P + +
Sbjct: 263 AGPTIAFAAGDRVV--LEQVQSRDYQPYPPLFAAEYATKIQEVLQLYPWEIQLTQLNLLA 320
Query: 312 NHDTGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347
+HDT + A V L +LT PG PSI+Y
Sbjct: 321 SHDTARLMTIAGGDIASVELSTLLLLTFPGAPSIYY 356
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 28/160 (17%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRT----------AEKKDRRGIWCIFEGGTP 153
YG+ + L+ K+G++ + D+VINH + A K + + + G
Sbjct: 74 EYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKD 133
Query: 154 DKRLDWGPSFICRDDTTYSDGRGHPDSGE----PFG-PAPDIDHLNPRVQKELSDWMN-W 207
+ PSF S P +G+ FG PD++ P++++EL + W
Sbjct: 134 GHEPNNYPSFFGG-----SAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFW 188
Query: 208 LKTEIGFDGWRFDFVKGYA-----PSITRLYMKNTMPHFT 242
L + G G RF V Y+ P +T MKN +T
Sbjct: 189 L--DKGVSGMRFATVATYSKTPGFPDLTPEQMKNFAEAYT 226
>pdb|4AMC|A Chain A, Crystal Structure Of Lactobacillus Reuteri 121
N-Terminally Truncated Glucansucrase Gtfa
Length = 1049
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 52 IASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASS---YGSQ 108
AS G T ++ ++ R F S I Y+ YDL S YG+
Sbjct: 701 FASLGFTSFEMAPQYN-SSKDRTFLDSTIDNGYAFTDR--------YDLGMSEPNKYGTD 751
Query: 109 NELKSLIQAFNKKGIKCLADIV 130
+L++ IQA +K G++ +AD V
Sbjct: 752 EDLRNAIQALHKAGLQVMADWV 773
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 75/197 (38%), Gaps = 41/197 (20%)
Query: 101 HASSYGSQNELKSLIQAFNKKGIKCLA-DIVINH----RTAEKKDRRGIWCIFEGG---- 151
H S QN K + + N ++ L D V N+ + +E + GI F+GG
Sbjct: 151 HYSEIVQQNIEKRISETGNTDWLRTLMHDFVTNNPMWNKDSENVNFSGIQ--FQGGFLKY 208
Query: 152 -----TPDKRLDW---GPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSD 203
TP D+ G I D TY G+ F A DID+ NP VQ E +
Sbjct: 209 ENSDLTPYANSDYRLLGRMPINIKDQTYR--------GQEFLLANDIDNSNPVVQAEQLN 260
Query: 204 WMNWL----KTEIGFDGWRFDFVKGYAP-SITRLYMKNTMPHFTVAEKWDSLSYRQDGKL 258
W+ +L D FD V+ AP +I M +F A DS
Sbjct: 261 WLYYLLNFGTITANNDQANFDSVRVDAPDNIDADLMNIAQDYFNAAYGMDS--------- 311
Query: 259 DARQDAHRRNLKYWVQA 275
DA + H L+ W A
Sbjct: 312 DAVSNKHINILEDWNHA 328
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 42 YNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAG----YMPGRL 97
+N LK + DI AG T ++ SP + + S+ Y P
Sbjct: 16 FNTLKNNMKDIHDAGYT--------AIQTSP---INQVKEGNKGDKSMGNWYWLYQPTS- 63
Query: 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137
Y + GS+ E K + A + G+K + D VINH T++
Sbjct: 64 YQIGNRYLGSEEEFKEMCAAAEEYGVKVIVDAVINHTTSD 103
>pdb|3AIB|A Chain A, Crystal Structure Of Glucansucrase
pdb|3AIB|B Chain B, Crystal Structure Of Glucansucrase
pdb|3AIB|C Chain C, Crystal Structure Of Glucansucrase
pdb|3AIB|D Chain D, Crystal Structure Of Glucansucrase
pdb|3AIB|G Chain G, Crystal Structure Of Glucansucrase
pdb|3AIB|E Chain E, Crystal Structure Of Glucansucrase
pdb|3AIB|F Chain F, Crystal Structure Of Glucansucrase
pdb|3AIB|H Chain H, Crystal Structure Of Glucansucrase
pdb|3AIC|A Chain A, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|B Chain B, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|C Chain C, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|D Chain D, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|E Chain E, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|F Chain F, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|G Chain G, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|H Chain H, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|A Chain A, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|B Chain B, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|C Chain C, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|D Chain D, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|E Chain E, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|F Chain F, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|G Chain G, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|H Chain H, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
Length = 844
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 28 QGF-NWES-CNKKGGWYNF-LKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAY 84
+GF N+++ KK + N + K + A G+T ++ + + + F S+I Y
Sbjct: 615 EGFSNFQAFATKKEEYTNVVIAKNVDKFAEWGVTDFEMAPQY-VSSTDGSFLDSVIQNGY 673
Query: 85 SHASLAGYMPGRLYDLHASS---YGSQNELKSLIQAFNKKGIKCLADIVINHR------- 134
+ YDL S YG+ ++L I+A + KGIK +AD V +
Sbjct: 674 AFTDR--------YDLGISKPNKYGTADDLVKAIKALHSKGIKVMADWVPDQMYALPEKE 725
Query: 135 --TAEKKDRRG----------IWCIFEGGTP--DKRLDWGPSFICRDDTTYSD--GRGHP 178
TA + D+ G + +G + D++ +G +F+ Y + R
Sbjct: 726 VVTATRVDKYGTPVAGSQIKNTLYVVDGKSSGKDQQAKYGGAFLEELQAKYPELFARKQI 785
Query: 179 DSGEPFGPAPDI 190
+G P P+ I
Sbjct: 786 STGVPMDPSVKI 797
>pdb|3KLL|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180-Maltose Complex
Length = 1039
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 54 SAGITHVWLSSTFSLC-----CSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASS---Y 105
+A + W +TF L F SII Y+ YDL S+ Y
Sbjct: 691 NADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDR--------YDLGXSTPNKY 742
Query: 106 GSQNELKSLIQAFNKKGIKCLADIV 130
GS +L++ +QA +K G++ +AD V
Sbjct: 743 GSDEDLRNALQALHKAGLQAIADWV 767
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 173 DGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWR 218
DG+ + G F A DID+ NP VQ E +W+ +L E FDG R
Sbjct: 232 DGKNY--GGAEFLLANDIDNSNPVVQAEELNWLYYLXNFGTITGNNPEANFDGIR 284
>pdb|3HZ3|A Chain A, Lactobacillus Reuteri N-Terminally Truncated Glucansucrase
Gtf180(D1025n)-Sucrose Complex
Length = 1039
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 54 SAGITHVWLSSTFSLC-----CSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASS---Y 105
+A + W +TF L F SII Y+ YDL S+ Y
Sbjct: 691 NADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDR--------YDLGMSTPNKY 742
Query: 106 GSQNELKSLIQAFNKKGIKCLADIV 130
GS +L++ +QA +K G++ +AD V
Sbjct: 743 GSDEDLRNALQALHKAGLQAIADWV 767
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 173 DGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFV 222
DG+ + G F A DID+ NP VQ E +W+ +L E FDG R + V
Sbjct: 232 DGKNY--GGAEFLLANDIDNSNPVVQAEELNWLYYLMNFGTITGNNPEANFDGIRVNAV 288
>pdb|3KLK|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180 In Triclinic Apo- Form
Length = 1039
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 54 SAGITHVWLSSTFSLC-----CSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASS---Y 105
+A + W +TF L F SII Y+ YDL S+ Y
Sbjct: 691 NADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDR--------YDLGMSTPNKY 742
Query: 106 GSQNELKSLIQAFNKKGIKCLADIV 130
GS +L++ +QA +K G++ +AD V
Sbjct: 743 GSDEDLRNALQALHKAGLQAIADWV 767
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 173 DGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWR 218
DG+ + G F A DID+ NP VQ E +W+ +L E FDG R
Sbjct: 232 DGKNY--GGAEFLLANDIDNSNPVVQAEELNWLYYLMNFGTITGNNPEANFDGIR 284
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Query: 45 LKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASS 104
LK +IP G+T+++L F C + S GY D++ +
Sbjct: 115 LKDKIPYFQELGLTYLYLMPLFK-CPEGK--------------SDGGYAVSSYRDVN-PA 158
Query: 105 YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKK 139
G+ +L+ +I A ++ GI + D + NH + E +
Sbjct: 159 LGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHE 193
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Query: 45 LKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASS 104
LK +IP G+T+++L F C + S GY D++ +
Sbjct: 115 LKDKIPYFQELGLTYLYLMPLFK-CPEGK--------------SDGGYAVSSYRDVN-PA 158
Query: 105 YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKK 139
G+ +L+ +I A ++ GI + D + NH + E +
Sbjct: 159 LGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHE 193
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 42 YNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAG----YMPGRL 97
+N LK + DI AG T ++ SP + + S++ Y P
Sbjct: 16 FNTLKHNMKDIHDAGYT--------AIQTSP---INQVKEGNQGDKSMSNWYWLYQPTS- 63
Query: 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRT 135
Y + G++ E K + A + GIK + D VINH T
Sbjct: 64 YQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTT 101
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 91 GYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINH 133
GY LY H S+YG+ ++ K+ I A + G+ + DIV+NH
Sbjct: 186 GYDGVLLYAPH-SAYGTPDDFKAFIDAAHGYGLSVVLDIVLNH 227
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 188 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPH--FTVAE 245
P ++H NP+V++ + + + + T G DG+R D G P + + ++ +P + + E
Sbjct: 380 PRLNHDNPKVREFIKNVILFW-TNKGVDGFRMDVAHGVPPEVWK-EVREALPKEKYLIGE 437
Query: 246 KWDS----LSYRQDGKLDAR-QDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIG 300
D L + G ++ R DA R Y +TA +F + L ++ G
Sbjct: 438 VMDDARLWLFDKFHGVMNYRLYDAILRFFGY------EEITAEEFLNELELLSSYYGPAE 491
Query: 301 LLPQNAVTFIDNHDTGSTQRLWPFP--SAKVMLGYAYILTHPGTPSIFY 347
L N F+DNHD +R K + +++T+ G PS+FY
Sbjct: 492 YLMYN---FLDNHDV---ERFLDIVGDKRKYVCALVFLMTYKGIPSLFY 534
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE----------KKDRRGIWCIFEGGT 152
+ +G+ + L+ +++ +K + D+V+NH + E K ++ + I+ G
Sbjct: 73 NEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGK 132
Query: 153 PDKR-LDWGPSF---ICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMN-W 207
K +WG +F + D + H S + PD++ N +V++++ + M W
Sbjct: 133 EGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKK----QPDLNWDNEKVRQDVYEMMKFW 188
Query: 208 LKTEIGFDGWRFDFV 222
L E G DG+R D +
Sbjct: 189 L--EKGIDGFRMDVI 201
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 42 YNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAG----YMPGRL 97
+N LK + DI AG T ++ SP + + S++ Y P
Sbjct: 19 FNTLKHNMKDIHDAGYT--------AIQTSP---INQVKEGNQGDKSMSNWYWLYQPTS- 66
Query: 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRT 135
Y + G++ E K + A + GIK + D VINH T
Sbjct: 67 YQIGNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTT 104
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137
+YG+ + +LI+ +K G+K + D+VINH ++E
Sbjct: 83 TYGTNEDCFALIEKTHKLGMKFITDLVINHCSSE 116
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137
+YG+ + +LI+ +K G+K + D+VINH ++E
Sbjct: 83 TYGTNEDCFALIEKTHKLGMKFITDLVINHCSSE 116
>pdb|3VM5|A Chain A, Recombinant Medaka Fish Alpha-Amylase Expressed In Yeast
Pichia Pastoris
Length = 505
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINH 133
Y+L + S G +NEL+ +I N G+ D VINH
Sbjct: 67 YNLCSRS-GGENELRDMITRCNNVGVNVYVDAVINH 101
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 169 TTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWL---------KTEIGFDGWRF 219
TT SD R P + F A D+D+ NP VQ E +W+++L + + FD R
Sbjct: 394 TTNSDYR-QPGNAFDFLLANDVDNSNPVVQAENLNWLHYLMNFGTITAGQDDANFDSIRI 452
Query: 220 DFV 222
D V
Sbjct: 453 DAV 455
>pdb|1TMQ|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase In
Complex With Ragi Bifunctional Inhibitor
pdb|1CLV|A Chain A, Yellow Meal Worm Alpha-Amylase In Complex With The
Amaranth Alpha-Amylase Inhibitor
pdb|1JAE|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase
Length = 471
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 189 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP---SITRLYMKNTMPHFTVAE 245
D++ + V+ L D+MN + ++G G+R D K +P S+ +KN + A+
Sbjct: 155 DLNQGSDYVRGVLIDYMNHM-IDLGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFAD 213
Query: 246 KWDSLSYRQDGKLDARQDAHRRN--------LKYWVQAA-GRAVTAFDFTTKGILQAAPP 296
Y++ +D +A +N L++ + G A + K + P
Sbjct: 214 GARPFIYQE--VIDLGGEAISKNEYTGFGCVLEFQFGVSLGNAFQGGN-QLKNLANWGPE 270
Query: 297 GFIGLLPQ-NAVTFIDNHD---TGSTQRLWPFPSAKVMLGYAYILTHP-GTPSIF 346
GLL +AV F+DNHD TG +Q L + A++L HP GT I
Sbjct: 271 --WGLLEGLDAVVFVDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTTRIM 323
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 110 ELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDT 169
E + ++QA N+ G++ + D+V NH + GI + DK + P + R DT
Sbjct: 380 EYRQMVQALNRIGLRVVMDVVYNH--LDSSGPCGISSVL-----DKIV---PGYYVRRDT 429
Query: 170 TYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSI 229
G ++ + R+ + D +NW DG+RFD + G+
Sbjct: 430 N-----GQIENSAAMNNTASEHFMVDRLI--VDDLLNW-AVNYKVDGFRFDLM-GHIMKR 480
Query: 230 TRLYMKNTMPHFT 242
T + K+ + T
Sbjct: 481 TMMRAKSALQSLT 493
>pdb|3CIV|A Chain A, Crystal Structure Of The Endo-Beta-1,4-Mannanase From
Alicyclobacillus Acidocaldarius
Length = 343
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 273 VQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLG 332
+ + GR +AFD G ++ GF+G T+ + S + L P V L
Sbjct: 21 MASMGRIESAFDL---GFIRGMTFGFVG----QHGTWGTDEARASMRALAEQPFNWVTLA 73
Query: 333 YAYILTHPGTPSIFY 347
+A ++ HPG P+I Y
Sbjct: 74 FAGLMEHPGDPAIAY 88
>pdb|1IUG|A Chain A, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
pdb|1IUG|B Chain B, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
Length = 352
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 190 IDHLNPRVQKELS--DWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEKW 247
++ + PR+++ L+ W N L +G +G K ++P++ Y+ +P+ V E +
Sbjct: 243 LEEVLPRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVPYARVKEAF 302
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137
Y+ A +G+ ++ +L+ +GIK + D+V+NH + E
Sbjct: 68 YEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDE 107
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137
Y+ A +G+ ++ +L+ +GIK + D+V+NH + E
Sbjct: 68 YEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDE 107
>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant
Enzyme W398v
Length = 637
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 30/132 (22%)
Query: 228 SITRLYMKNTMPHFTVAEKWDSLSYRQDGKLDARQDAHRRNLKYWV-------QAAGRAV 280
+I Y+ N P +WD+ + D + + W+ +A +
Sbjct: 392 AIIGEYVGNANPWTAQGNQWDAAT---------NFDGFTQPVSEWITGKDYQNNSASIST 442
Query: 281 TAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD-----TGSTQRLWPFPSAKVMLGYAY 335
T FD +G P + Q+ + F+ NHD T S LW K L +
Sbjct: 443 TQFDSWLRGTRANYPTN----VQQSMMNFLSNHDITRFATRSGGDLW-----KTYLALIF 493
Query: 336 ILTHPGTPSIFY 347
+T+ GTP+I+Y
Sbjct: 494 QMTYVGTPTIYY 505
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137
G+ ++L +L +A +GI + D+V+NH E
Sbjct: 158 GTMDDLSALARALRGRGISLVLDLVLNHVARE 189
>pdb|1VIW|A Chain A, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
Length = 471
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 189 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP---SITRLYMKNTMPHFTVAE 245
D++ + V+ L D+MN + ++G G+R D K +P S+ +KN + A+
Sbjct: 155 DLNAGSDYVRGVLIDYMNHM-IDLGVAGFRVDAAKHMSPGDLSVIFDGLKNLNTDYGFAD 213
Query: 246 KWDSLSYRQDGKLDARQDAHRRN--------LKYWVQAA-GRAVTAFDFTTKGILQAAPP 296
Y++ +D +A +N L++ + G A + K + P
Sbjct: 214 GARPFIYQE--VIDLGGEAISKNEYTGFGCVLEFQFGVSLGNAFQGGN-QLKNLANWGPE 270
Query: 297 GFIGLLPQ-NAVTFIDNHD---TGSTQRLWPFPSAKVMLGYAYILTHP-GTPSIF 346
GLL +AV F+DNHD TG +Q L + A++L HP GT I
Sbjct: 271 --WGLLEGLDAVVFVDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTTRIM 323
>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant
Enzyme F313a
Length = 637
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 271 YWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD-----TGSTQRLWPFP 325
Y +A + T FD +G P + Q+ + F+ NHD T S LW
Sbjct: 433 YQNNSASISTTQFDSWLRGTRANYPTN----VQQSMMNFLSNHDITRFATRSGGDLW--- 485
Query: 326 SAKVMLGYAYILTHPGTPSIFY 347
K L + +T+ GTP+I+Y
Sbjct: 486 --KTYLALIFQMTYVGTPTIYY 505
>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHR 134
++GS+ + SL+Q+ KK I+ + D+ N+R
Sbjct: 77 NFGSKEDFDSLLQSAKKKSIRVILDLTPNYR 107
>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1UH3|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseACARBOSE
Complex
Length = 637
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 271 YWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD-----TGSTQRLWPFP 325
Y +A + T FD +G P + Q+ + F+ NHD T S LW
Sbjct: 433 YQNNSASISTTQFDSWLRGTRANYPTN----VQQSMMNFLSNHDITRFATRSGGDLW--- 485
Query: 326 SAKVMLGYAYILTHPGTPSIFY 347
K L + +T+ GTP+I+Y
Sbjct: 486 --KTYLALIFQMTYVGTPTIYY 505
>pdb|2D0F|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356n Complexed With P2,
A Pullulan Model Oligosaccharide
Length = 637
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 271 YWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD-----TGSTQRLWPFP 325
Y +A + T FD +G P + Q+ + F+ NHD T S LW
Sbjct: 433 YQNNSASISTTQFDSWLRGTRANYPTN----VQQSMMNFLSNHDITRFATRSGGDLW--- 485
Query: 326 SAKVMLGYAYILTHPGTPSIFY 347
K L + +T+ GTP+I+Y
Sbjct: 486 --KTYLALIFQMTYVGTPTIYY 505
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHR 134
++GS+ + SL+Q+ KK I+ + D+ N+R
Sbjct: 77 NFGSKEDFDSLLQSAKKKSIRVILDLTPNYR 107
>pdb|1UH2|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-Hexaose
Complex
pdb|1UH4|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1MALTO-
Tridecaose Complex
pdb|2D0G|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P5, A Pullulan Model Oligosaccharide
pdb|2D0H|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P2, A Pullulan Model Oligosaccharide
Length = 637
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 271 YWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHD-----TGSTQRLWPFP 325
Y +A + T FD +G P + Q+ + F+ NHD T S LW
Sbjct: 433 YQNNSASISTTQFDSWLRGTRANYPTN----VQQSMMNFLSNHDITRFATRSGGDLW--- 485
Query: 326 SAKVMLGYAYILTHPGTPSIFY 347
K L + +T+ GTP+I+Y
Sbjct: 486 --KTYLALIFQMTYVGTPTIYY 505
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 59/314 (18%), Positives = 108/314 (34%), Gaps = 51/314 (16%)
Query: 37 KKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGR 96
+KG + L+K + + GI VWL R +L R
Sbjct: 19 EKGKKFLSLEKDLERLKGMGINTVWLMPIHPTGVEGR------------KGTLGSPYAIR 66
Query: 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKR 156
Y G++ + K ++ ++ + L D+V+NH +
Sbjct: 67 DYYEIDLLIGTKGDFKKFVKRAHELNMYVLMDMVLNH----------------AAVDNVL 110
Query: 157 LDWGPSFICRDDTTYSDGRGHPDSGEP-FGPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 215
+ P + RD+ G+P P + D D+ N +++ + + M + E D
Sbjct: 111 VKKHPEWFLRDEN------GNPTRKVPDWSDVVDFDYSNGELREYMINMMRYWVEEFDVD 164
Query: 216 GWRFDFVKGYAPSITRLYMKNTMPHFT----VAEKWDSLSYRQDGKLDARQDAHRRNLKY 271
G+R D V G P L + + ++E D Y Q + D + R +
Sbjct: 165 GFRCD-VAGLVPLDFWLQARKNLDPVKRLIWISETHDPYMY-QAFDITYDYDGYYR-FRD 221
Query: 272 WVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVML 331
+++ DF P G+I + F++NHD + +M
Sbjct: 222 FIEGKNSLREYIDFLRMQD-HMYPRGYIKM------RFLENHDQPRVAKF--LSRESLMH 272
Query: 332 GYAYILTHPGTPSI 345
A++ T G P +
Sbjct: 273 WIAFLFTVKGVPLV 286
>pdb|1OSE|A Chain A, Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133
G++NE + ++ N G++ D VINH
Sbjct: 74 GNENEFRDMVTRCNNVGVRIYVDAVINH 101
>pdb|1JFH|A Chain A, Structure Of A Pancreatic Alpha-Amylase Bound To A
Substrate Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133
G++NE + ++ N G++ D VINH
Sbjct: 74 GNENEFRDMVTRCNNVGVRIYVDAVINH 101
>pdb|1PPI|A Chain A, The Active Center Of A Mammalian Alpha-Amylase. The
Structure Of The Complex Of A Pancreatic Alpha-Amylase
With A Carbohydrate Inhibitor Refined To 2.2 Angstroms
Resolution
Length = 496
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133
G++NE + ++ N G++ D VINH
Sbjct: 74 GNENEFRDMVTRCNNVGVRIYVDAVINH 101
>pdb|1PIF|A Chain A, Pig Alpha-amylase
pdb|1PIG|A Chain A, Pig Pancreatic Alpha-Amylase Complexed With The
Oligosaccharide V-1532
Length = 496
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133
G++NE + ++ N G++ D VINH
Sbjct: 74 GNENEFRDMVTRCNNVGVRIYVDAVINH 101
>pdb|1UA3|A Chain A, Crystal Structure Of The Pig Pancreatic A-Amylase
Complexed With Malto-Oligosaccharides
Length = 496
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133
G++NE + ++ N G++ D VINH
Sbjct: 74 GNENEFRDMVTRCNNVGVRIYVDAVINH 101
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133
G++NE + ++ N G++ D VINH
Sbjct: 74 GNENEFRDMVTRCNNVGVRIYVDAVINH 101
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133
G++NE + ++ N G++ D VINH
Sbjct: 74 GNENEFRDMVTRCNNVGVRIYVDAVINH 101
>pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amylase Complexed With
The "truncate" Acarbose Molecule (Pseudotrisaccharide)
pdb|1WO2|A Chain A, Crystal Structure Of The Pig Pancreatic Alpha-Amylase
Complexed With Malto-Oligosaacharides Under The Effect
Of The Chloride Ion
Length = 496
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133
G++NE + ++ N G++ D VINH
Sbjct: 74 GNENEFRDMVTRCNNVGVRIYVDAVINH 101
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133
G++NE + ++ N G++ D VINH
Sbjct: 74 GNENEFRDMVTRCNNVGVRIYVDAVINH 101
>pdb|1VAH|A Chain A, Crystal Structure Of The Pig Pancreatic-Amylase Complexed
With R-Nitrophenyl-A-D-Maltoside
Length = 496
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133
G++NE + ++ N G++ D VINH
Sbjct: 74 GNENEFRDMVTRCNNVGVRIYVDAVINH 101
>pdb|3L2L|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Limit Dextrin And Oligosaccharide
pdb|3L2M|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Alpha-Cyclodextrin
Length = 496
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133
G++NE + ++ N G++ D VINH
Sbjct: 74 GNENEFRDMVTRCNNVGVRIYVDAVINH 101
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 48 RIPDIASAGITHVWLSSTF--------SLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYD 99
R P + G + VW S F +L FF + H SHAS RL D
Sbjct: 139 RFPAFTAQGESLVWYFSFFAADDRLAETLIAGKERFF--LEHFIKSHASNTEVFSERLLD 196
Query: 100 LHASSYGSQNELKSLIQAF 118
L+A SY + L + + +
Sbjct: 197 LYARSYAKPHSLNASFEYY 215
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 91/265 (34%), Gaps = 32/265 (12%)
Query: 105 YGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFI 164
YGS + L K+G+ + D+V++H W + + TPD +++G F+
Sbjct: 195 YGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHH------WWMKDLPTPDW-INYGGKFV 247
Query: 165 CRDD--TTYSDGRGHPDSGEPFGPA------PDIDHLNPRVQKELSDWMNWLKTEIGFDG 216
D E F PD++ NP V L W G G
Sbjct: 248 PTQHHRVAVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSG 307
Query: 217 WRFDFVKGYAPSITRLYMKNTMPHF----TVAEKWDS----LSYRQDGKLDARQDAHRRN 268
R D + Y + M + V E+W + ++ Q GK A D + +
Sbjct: 308 LRIDTYGYSDGAFLTEYTRRLMAEYPRLNMVGEEWSTRVPVVARWQRGK--ANFDGYTSH 365
Query: 269 LKY-----WVQAAGRAV--TAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRL 321
L V A A+ T + + + ++ PQN V F NHD
Sbjct: 366 LPSLMDFPLVDAMRNALSKTGEENGLNEVYETLSLDYLYPEPQNLVLFGGNHDMARMFSA 425
Query: 322 WPFPSAKVMLGYAYILTHPGTPSIF 346
+ + +++T P P +
Sbjct: 426 AGEDFDRWRMNLVFLMTMPRIPQFY 450
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 45/194 (23%)
Query: 48 RIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS 107
R+ + GI +WLS + SP + Y + P YG+
Sbjct: 37 RLDYLEKLGIDAIWLSPVYQ---SPG------VDNGYDISDYEAIDP---------QYGT 78
Query: 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRD 167
++ LI + IK + D+V+NH + + K W + D + + +I RD
Sbjct: 79 MADMDELISKAKEHHIKIVMDLVVNHTSDQHK-----WFVEAKKGKDNQ--YRDYYIWRD 131
Query: 168 ----------DTTYSDGRGHPD--SGEPF-----GPAPDIDHLNPRVQKELSDWMN-WLK 209
+ +S D SG+ + PD++ N +++++ + MN WL
Sbjct: 132 PVDEHEPNDLKSAFSGSAWKYDERSGQYYLHFFADQQPDLNWQNTELRQKIYNMMNFWLD 191
Query: 210 TEIGFDGWRFDFVK 223
IG G+R D ++
Sbjct: 192 KGIG--GFRMDVIE 203
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 85/234 (36%), Gaps = 50/234 (21%)
Query: 38 KGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRL 97
KGG + +++P + G+ ++L+ F+ + R +H++ +
Sbjct: 45 KGGTLWGVAEKLPYLLDLGVEAIYLNPVFASTANHR--YHTVDYFQVD------------ 90
Query: 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWC---IFEGGTPD 154
G L+ L++ + G++ + D V NH RG + + E G
Sbjct: 91 -----PILGGNEALRHLLEVAHAHGVRVILDGVFNHTG------RGFFAFQHLXENGEQS 139
Query: 155 KRLDW-----GPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKE-LSDWMNWL 208
DW P Y G+P+ P + P V++ L+ +W+
Sbjct: 140 PYRDWYHVKGFPLKAYTAHPNYEAWWGNPE-------LPKLKVETPAVREYLLAVAEHWI 192
Query: 209 KTEIGFDGWRFDFVKGYAPSIT-----RLYMKNTMPH-FTVAEKWDSLSYRQDG 256
+ G DGWR D V P T R +K P + V E W+ + G
Sbjct: 193 R--FGVDGWRLD-VPNEIPDPTFWREFRQRVKGANPEAYIVGEIWEEADFWLQG 243
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 91 GYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137
GY LY + +SYG + L+ +KKG+ + D+V NH E
Sbjct: 151 GYDGVYLYAVQ-NSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPE 196
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 91 GYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137
GY LY + +SYG + L+ +KKG+ + D+V NH E
Sbjct: 151 GYDGVYLYAVQ-NSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPE 196
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 91 GYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137
GY LY + +SYG + L+ +KKG+ + D+V NH E
Sbjct: 151 GYDGVYLYAVQ-NSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPE 196
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 91 GYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137
GY LY + +SYG + L+ +KKG+ + D+V NH E
Sbjct: 151 GYDGVYLYAVQ-NSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPE 196
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 91 GYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137
GY LY + +SYG + L+ +KKG+ + D+V NH E
Sbjct: 151 GYDGVYLYAVQ-NSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPE 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,211,572
Number of Sequences: 62578
Number of extensions: 584997
Number of successful extensions: 1655
Number of sequences better than 100.0: 157
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 1373
Number of HSP's gapped (non-prelim): 239
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)