Query 045962
Match_columns 423
No_of_seqs 139 out of 1410
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00196 alpha-amylase; Provis 100.0 2.9E-78 6.2E-83 601.6 42.5 383 23-423 24-423 (428)
2 PLN02361 alpha-amylase 100.0 6.6E-71 1.4E-75 542.5 39.2 368 23-423 11-397 (401)
3 PLN02784 alpha-amylase 100.0 2.8E-67 6E-72 541.8 39.9 373 23-423 502-889 (894)
4 PRK09441 cytoplasmic alpha-amy 100.0 1.2E-60 2.6E-65 487.8 35.1 344 23-403 3-430 (479)
5 PRK10785 maltodextrin glucosid 100.0 2.4E-59 5.2E-64 487.8 28.4 336 39-410 175-567 (598)
6 TIGR02456 treS_nterm trehalose 100.0 5.7E-58 1.2E-62 473.8 32.1 362 23-421 9-515 (539)
7 TIGR02403 trehalose_treC alpha 100.0 3.7E-57 7.9E-62 466.9 32.5 372 23-419 8-521 (543)
8 PRK09505 malS alpha-amylase; R 100.0 1.1E-56 2.4E-61 467.0 30.7 337 39-402 226-682 (683)
9 PRK10933 trehalose-6-phosphate 100.0 2.1E-56 4.5E-61 460.7 32.4 372 23-420 14-528 (551)
10 PRK12313 glycogen branching en 100.0 6.2E-51 1.3E-55 428.5 32.9 350 23-421 151-585 (633)
11 TIGR02104 pulA_typeI pullulana 100.0 6.1E-52 1.3E-56 433.6 24.4 365 23-421 131-600 (605)
12 TIGR01515 branching_enzym alph 100.0 1.9E-49 4.1E-54 414.6 30.8 343 23-421 142-572 (613)
13 TIGR02100 glgX_debranch glycog 100.0 1.7E-49 3.7E-54 416.5 29.3 369 23-420 159-661 (688)
14 TIGR02402 trehalose_TreZ malto 100.0 1.6E-49 3.5E-54 408.8 27.9 326 23-404 97-537 (542)
15 PRK14706 glycogen branching en 100.0 7.7E-49 1.7E-53 408.0 32.6 350 23-421 148-580 (639)
16 PRK05402 glycogen branching en 100.0 7.3E-49 1.6E-53 417.4 32.6 351 23-421 245-681 (726)
17 PF00128 Alpha-amylase: Alpha 100.0 2.7E-51 5.8E-56 397.2 12.7 286 40-352 1-309 (316)
18 PRK03705 glycogen debranching 100.0 3.7E-49 7.9E-54 411.0 26.9 364 23-417 154-631 (658)
19 PRK12568 glycogen branching en 100.0 1.2E-47 2.6E-52 398.1 30.9 346 23-421 250-686 (730)
20 PRK14510 putative bifunctional 100.0 1.2E-47 2.6E-52 422.8 26.3 329 23-380 162-580 (1221)
21 PRK14705 glycogen branching en 100.0 8.2E-46 1.8E-50 401.4 31.6 341 23-421 751-1180(1224)
22 TIGR02102 pullulan_Gpos pullul 100.0 4.9E-45 1.1E-49 393.3 30.8 371 23-419 455-971 (1111)
23 TIGR03852 sucrose_gtfA sucrose 100.0 1.2E-45 2.6E-50 367.2 22.9 332 23-403 1-462 (470)
24 PRK13840 sucrose phosphorylase 100.0 8.3E-45 1.8E-49 363.4 26.4 331 23-400 3-465 (495)
25 PLN02960 alpha-amylase 100.0 3.3E-43 7.1E-48 365.3 32.1 350 23-421 399-847 (897)
26 PLN02447 1,4-alpha-glucan-bran 100.0 7.6E-42 1.6E-46 355.5 31.5 336 39-421 246-687 (758)
27 COG0366 AmyA Glycosidases [Car 100.0 7.9E-41 1.7E-45 345.8 25.6 359 23-404 4-486 (505)
28 TIGR02103 pullul_strch alpha-1 100.0 1.3E-40 2.9E-45 352.7 26.1 374 23-416 256-861 (898)
29 COG0296 GlgB 1,4-alpha-glucan 100.0 1.6E-39 3.5E-44 330.2 24.2 343 23-420 148-584 (628)
30 PLN02877 alpha-amylase/limit d 100.0 4E-39 8.6E-44 340.6 27.2 370 23-411 343-924 (970)
31 KOG0471 Alpha-amylase [Carbohy 100.0 4.9E-39 1.1E-43 330.3 23.9 356 23-402 21-504 (545)
32 COG1523 PulA Type II secretory 100.0 1.5E-39 3.4E-44 335.6 19.9 364 23-418 175-667 (697)
33 TIGR02401 trehalose_TreY malto 100.0 3.2E-38 7E-43 329.7 29.1 193 39-248 12-286 (825)
34 TIGR02455 TreS_stutzeri trehal 100.0 1.1E-36 2.5E-41 305.9 27.9 324 48-402 79-631 (688)
35 KOG2212 Alpha-amylase [Carbohy 100.0 2.3E-32 5E-37 252.2 24.8 357 23-420 28-464 (504)
36 PRK14511 maltooligosyl trehalo 100.0 4E-32 8.7E-37 285.2 26.8 192 39-247 16-330 (879)
37 KOG0470 1,4-alpha-glucan branc 100.0 3.2E-33 7E-38 281.5 17.6 335 23-400 233-681 (757)
38 PLN03244 alpha-amylase; Provis 100.0 3.5E-30 7.5E-35 263.6 27.6 299 93-421 426-822 (872)
39 smart00642 Aamy Alpha-amylase 99.9 8.4E-27 1.8E-31 204.3 10.4 97 24-136 1-97 (166)
40 PRK14507 putative bifunctional 99.9 2.5E-21 5.4E-26 215.5 17.7 82 39-137 754-835 (1693)
41 COG3280 TreY Maltooligosyl tre 99.8 2.8E-19 6.1E-24 180.6 13.4 189 41-246 17-332 (889)
42 TIGR01531 glyc_debranch glycog 99.8 1.7E-16 3.7E-21 172.3 28.7 83 38-138 127-214 (1464)
43 PF14872 GHL5: Hypothetical gl 99.2 1.3E-09 2.9E-14 109.5 17.6 153 39-225 192-393 (811)
44 PF02324 Glyco_hydro_70: Glyco 99.0 6.5E-09 1.4E-13 105.5 14.4 189 183-391 139-422 (809)
45 PF02638 DUF187: Glycosyl hydr 98.9 1.4E-08 3.1E-13 98.2 13.0 155 23-221 3-162 (311)
46 PF14701 hDGE_amylase: glucano 98.9 4.3E-09 9.3E-14 103.7 8.6 83 39-139 18-107 (423)
47 KOG3625 Alpha amylase [Carbohy 98.8 1.2E-06 2.7E-11 91.4 21.2 82 39-138 138-226 (1521)
48 PF02324 Glyco_hydro_70: Glyco 98.6 5.2E-08 1.1E-12 99.1 7.4 103 23-136 564-674 (809)
49 PF14871 GHL6: Hypothetical gl 98.6 4.5E-07 9.8E-12 76.2 10.6 129 46-221 3-132 (132)
50 COG1649 Uncharacterized protei 98.5 1.2E-06 2.7E-11 86.3 13.4 152 39-225 60-211 (418)
51 PRK14508 4-alpha-glucanotransf 98.3 5.5E-05 1.2E-09 77.6 18.9 44 23-67 7-51 (497)
52 PLN02635 disproportionating en 98.1 0.00011 2.5E-09 75.5 15.7 45 23-68 30-75 (538)
53 PF11941 DUF3459: Domain of un 97.9 4.7E-05 1E-09 59.4 6.6 62 358-420 1-71 (89)
54 PF02446 Glyco_hydro_77: 4-alp 97.8 0.00014 3.1E-09 75.0 10.2 29 38-66 13-42 (496)
55 cd06593 GH31_xylosidase_YicI Y 97.7 0.00033 7.2E-09 67.9 12.1 136 40-227 21-163 (308)
56 PRK14510 putative bifunctional 97.7 0.00086 1.9E-08 76.1 15.9 44 24-67 726-770 (1221)
57 smart00810 Alpha-amyl_C2 Alpha 97.7 0.00015 3.3E-09 51.6 6.2 51 373-423 7-57 (61)
58 PF02065 Melibiase: Melibiase; 97.7 0.00055 1.2E-08 68.2 12.5 139 41-226 56-196 (394)
59 cd06592 GH31_glucosidase_KIAA1 97.7 0.00071 1.5E-08 65.5 12.7 133 41-224 28-166 (303)
60 PF13200 DUF4015: Putative gly 97.5 0.00096 2.1E-08 64.2 10.6 136 40-226 10-150 (316)
61 PRK14582 pgaB outer membrane N 97.2 0.0045 9.7E-08 65.6 12.6 135 41-221 332-466 (671)
62 PF13199 Glyco_hydro_66: Glyco 97.0 0.0061 1.3E-07 63.2 11.3 151 41-224 116-269 (559)
63 cd06597 GH31_transferase_CtsY 96.9 0.0044 9.5E-08 60.9 9.3 37 189-225 153-189 (340)
64 PRK09936 hypothetical protein; 96.8 0.007 1.5E-07 56.8 8.6 187 1-239 1-200 (296)
65 cd06594 GH31_glucosidase_YihQ 96.7 0.0057 1.2E-07 59.5 8.1 146 41-226 21-169 (317)
66 cd06602 GH31_MGAM_SI_GAA This 96.6 0.026 5.7E-07 55.5 11.9 143 41-225 22-167 (339)
67 cd06604 GH31_glucosidase_II_Ma 96.6 0.021 4.5E-07 56.2 11.2 129 41-223 22-159 (339)
68 TIGR00217 malQ 4-alpha-glucano 96.6 0.029 6.2E-07 58.1 12.4 45 23-68 16-61 (513)
69 cd06599 GH31_glycosidase_Aec37 96.5 0.016 3.5E-07 56.4 9.8 135 42-224 28-169 (317)
70 cd06591 GH31_xylosidase_XylS X 96.4 0.012 2.6E-07 57.3 8.4 133 41-224 22-160 (319)
71 PF07821 Alpha-amyl_C2: Alpha- 96.4 0.0086 1.9E-07 42.4 5.0 47 373-423 7-55 (59)
72 PRK11052 malQ 4-alpha-glucanot 96.2 0.041 8.9E-07 58.9 11.5 43 24-66 145-188 (695)
73 PF14488 DUF4434: Domain of un 96.1 0.027 5.8E-07 49.4 8.0 87 24-133 3-89 (166)
74 PRK14507 putative bifunctional 96.1 0.026 5.6E-07 65.4 9.7 74 173-246 1027-1113(1693)
75 PRK10658 putative alpha-glucos 96.0 0.018 3.9E-07 61.6 7.8 91 110-226 326-421 (665)
76 cd06600 GH31_MGAM-like This fa 96.0 0.024 5.2E-07 55.2 8.0 137 41-224 22-161 (317)
77 PRK10426 alpha-glucosidase; Pr 95.7 0.12 2.6E-06 55.1 12.4 139 42-226 220-366 (635)
78 cd06598 GH31_transferase_CtsZ 95.5 0.046 9.9E-07 53.3 7.6 135 41-223 22-164 (317)
79 PF07745 Glyco_hydro_53: Glyco 95.3 0.073 1.6E-06 51.9 8.3 57 46-134 27-83 (332)
80 cd06542 GH18_EndoS-like Endo-b 95.2 0.097 2.1E-06 49.2 8.6 79 92-222 28-113 (255)
81 PF01055 Glyco_hydro_31: Glyco 95.1 0.029 6.3E-07 57.3 5.2 139 41-225 41-182 (441)
82 cd06562 GH20_HexA_HexB-like Be 95.1 0.18 3.9E-06 49.8 10.5 130 42-219 17-155 (348)
83 PF05913 DUF871: Bacterial pro 95.1 0.047 1E-06 53.8 6.2 62 40-134 11-72 (357)
84 PF00150 Cellulase: Cellulase 94.9 0.042 9.1E-07 52.0 5.2 80 23-132 6-85 (281)
85 cd06568 GH20_SpHex_like A subg 94.7 0.51 1.1E-05 46.2 12.3 141 41-228 16-171 (329)
86 COG1640 MalQ 4-alpha-glucanotr 94.6 0.38 8.2E-06 49.5 11.5 45 24-68 15-61 (520)
87 smart00632 Aamy_C Aamy_C domai 94.4 0.072 1.6E-06 40.6 4.5 37 383-419 7-49 (81)
88 cd06595 GH31_xylosidase_XylS-l 94.1 0.12 2.6E-06 49.7 6.4 135 41-223 23-159 (292)
89 COG3280 TreY Maltooligosyl tre 93.9 0.096 2.1E-06 55.1 5.6 71 330-400 709-825 (889)
90 COG3589 Uncharacterized conser 93.9 0.1 2.2E-06 50.0 5.2 60 40-132 13-72 (360)
91 KOG1065 Maltase glucoamylase a 93.9 0.54 1.2E-05 50.4 11.0 136 40-222 308-447 (805)
92 COG1501 Alpha-glucosidases, fa 93.2 0.31 6.7E-06 53.0 8.2 90 111-226 323-418 (772)
93 PLN03059 beta-galactosidase; P 93.1 0.22 4.7E-06 54.0 6.7 64 42-132 58-121 (840)
94 PF10566 Glyco_hydro_97: Glyco 93.1 1.2 2.7E-05 42.1 11.1 67 39-131 28-95 (273)
95 PF02449 Glyco_hydro_42: Beta- 92.8 0.16 3.5E-06 50.6 5.1 125 43-225 10-140 (374)
96 PF02806 Alpha-amylase_C: Alph 92.6 0.35 7.5E-06 37.8 5.8 42 380-421 5-57 (95)
97 COG3867 Arabinogalactan endo-1 92.5 0.48 1E-05 44.7 7.4 59 45-131 65-126 (403)
98 cd02875 GH18_chitobiase Chitob 92.5 0.27 5.8E-06 48.7 6.2 32 192-223 91-122 (358)
99 PLN02763 hydrolase, hydrolyzin 92.5 0.26 5.7E-06 54.4 6.5 33 190-223 304-336 (978)
100 cd06601 GH31_lyase_GLase GLase 92.4 0.43 9.3E-06 46.7 7.4 110 41-223 22-133 (332)
101 cd06603 GH31_GANC_GANAB_alpha 92.4 0.38 8.2E-06 47.3 7.1 136 41-223 22-162 (339)
102 cd06545 GH18_3CO4_chitinase Th 92.4 0.55 1.2E-05 44.1 7.9 32 192-223 78-109 (253)
103 cd06563 GH20_chitobiase-like T 92.4 1 2.2E-05 44.7 10.0 81 107-213 84-165 (357)
104 cd06589 GH31 The enzymes of gl 92.3 1.4 3E-05 41.7 10.5 97 40-226 21-119 (265)
105 cd02742 GH20_hexosaminidase Be 91.8 0.76 1.7E-05 44.4 8.3 123 41-212 14-147 (303)
106 cd06564 GH20_DspB_LnbB-like Gl 91.5 1.8 3.8E-05 42.3 10.6 81 107-219 80-163 (326)
107 TIGR03849 arch_ComA phosphosul 91.3 12 0.00026 34.6 15.3 105 49-247 77-193 (237)
108 PF14883 GHL13: Hypothetical g 90.7 3.4 7.3E-05 39.2 10.9 123 45-219 19-142 (294)
109 cd02871 GH18_chitinase_D-like 90.4 1.4 3E-05 42.8 8.6 63 107-223 58-120 (312)
110 cd06570 GH20_chitobiase-like_1 90.3 2.1 4.6E-05 41.5 9.7 125 41-212 16-146 (311)
111 PLN03236 4-alpha-glucanotransf 90.1 0.62 1.3E-05 50.1 6.2 77 23-112 62-139 (745)
112 PLN02950 4-alpha-glucanotransf 90.0 0.67 1.5E-05 51.4 6.7 77 23-112 262-339 (909)
113 PF01120 Alpha_L_fucos: Alpha- 90.0 2.8 6.1E-05 41.3 10.5 51 197-247 190-245 (346)
114 cd06565 GH20_GcnA-like Glycosy 89.6 3.6 7.7E-05 39.7 10.7 115 41-213 15-131 (301)
115 PRK11052 malQ 4-alpha-glucanot 89.6 0.87 1.9E-05 49.0 6.9 27 88-115 197-223 (695)
116 smart00812 Alpha_L_fucos Alpha 89.5 6.9 0.00015 39.2 12.9 132 49-241 87-226 (384)
117 TIGR01370 cysRS possible cyste 88.3 1.4 3E-05 42.7 6.7 35 190-225 138-172 (315)
118 PF14701 hDGE_amylase: glucano 88.2 0.81 1.8E-05 45.9 5.2 51 184-236 360-415 (423)
119 PF01301 Glyco_hydro_35: Glyco 87.7 2.3 5E-05 41.4 8.0 65 43-134 24-88 (319)
120 PF10438 Cyc-maltodext_C: Cycl 87.4 0.57 1.2E-05 35.4 2.8 27 378-404 3-32 (78)
121 PF11852 DUF3372: Domain of un 86.3 1.9 4.1E-05 37.6 5.8 57 355-411 43-124 (168)
122 PLN02950 4-alpha-glucanotransf 85.7 2.2 4.7E-05 47.4 7.3 29 109-138 461-489 (909)
123 PF02679 ComA: (2R)-phospho-3- 85.2 1.8 3.8E-05 40.3 5.4 55 39-130 73-134 (244)
124 cd06569 GH20_Sm-chitobiase-lik 84.9 2.6 5.5E-05 43.1 6.9 30 107-136 95-125 (445)
125 PF00728 Glyco_hydro_20: Glyco 84.7 1 2.2E-05 44.3 3.9 134 41-219 16-162 (351)
126 cd02874 GH18_CFLE_spore_hydrol 84.5 3.4 7.4E-05 40.0 7.4 32 192-223 82-113 (313)
127 PLN03236 4-alpha-glucanotransf 83.6 2.1 4.5E-05 46.2 5.8 29 109-138 274-302 (745)
128 PF13204 DUF4038: Protein of u 83.1 3.2 6.9E-05 39.8 6.4 75 41-133 28-110 (289)
129 PF03198 Glyco_hydro_72: Gluca 82.7 2.7 5.9E-05 40.3 5.6 57 43-139 53-109 (314)
130 TIGR03356 BGL beta-galactosida 82.4 4.2 9.1E-05 41.4 7.3 65 40-130 51-115 (427)
131 PRK15452 putative protease; Pr 81.6 12 0.00026 38.2 10.2 21 107-127 44-64 (443)
132 PRK14581 hmsF outer membrane N 81.0 16 0.00034 39.3 11.2 128 45-219 336-464 (672)
133 cd06547 GH85_ENGase Endo-beta- 78.6 3.5 7.5E-05 40.5 5.0 31 195-225 85-115 (339)
134 cd00598 GH18_chitinase-like Th 78.4 11 0.00025 33.7 8.2 32 193-224 84-115 (210)
135 PRK10076 pyruvate formate lyas 78.2 6.8 0.00015 35.8 6.5 79 23-127 133-211 (213)
136 COG2730 BglC Endoglucanase [Ca 76.8 5.4 0.00012 40.3 6.0 60 45-130 75-137 (407)
137 COG3345 GalA Alpha-galactosida 76.2 7.7 0.00017 40.0 6.7 78 42-139 308-385 (687)
138 cd06546 GH18_CTS3_chitinase GH 75.8 26 0.00055 33.0 9.9 35 193-227 92-126 (256)
139 KOG2499 Beta-N-acetylhexosamin 75.5 16 0.00034 37.2 8.5 30 107-136 248-278 (542)
140 PRK15447 putative protease; Pr 74.9 10 0.00023 36.5 7.2 58 29-127 9-66 (301)
141 TIGR01210 conserved hypothetic 73.9 6.8 0.00015 38.1 5.6 32 100-133 148-179 (313)
142 PF00724 Oxidored_FMN: NADH:fl 73.5 22 0.00048 34.9 9.2 29 108-138 79-107 (341)
143 PF08821 CGGC: CGGC domain; I 71.5 15 0.00032 29.6 6.1 39 24-66 37-75 (107)
144 cd02929 TMADH_HD_FMN Trimethyl 71.5 56 0.0012 32.5 11.6 28 108-137 82-109 (370)
145 PF07555 NAGidase: beta-N-acet 71.2 30 0.00066 33.4 9.3 98 41-219 13-110 (306)
146 KOG0259 Tyrosine aminotransfer 70.9 8.3 0.00018 38.0 5.3 84 39-137 133-247 (447)
147 PRK07094 biotin synthase; Prov 70.7 8.7 0.00019 37.3 5.6 39 97-137 155-193 (323)
148 PRK13210 putative L-xylulose 5 70.5 58 0.0013 30.6 11.2 54 44-127 17-70 (284)
149 cd04733 OYE_like_2_FMN Old yel 69.2 56 0.0012 32.0 11.0 28 108-137 81-108 (338)
150 PF01212 Beta_elim_lyase: Beta 69.0 4.7 0.0001 38.7 3.2 24 107-130 143-166 (290)
151 cd04735 OYE_like_4_FMN Old yel 68.7 56 0.0012 32.3 10.9 28 108-137 77-104 (353)
152 PRK05628 coproporphyrinogen II 68.4 11 0.00024 37.5 5.9 34 104-137 139-173 (375)
153 cd02931 ER_like_FMN Enoate red 67.2 1E+02 0.0022 30.8 12.5 27 108-136 82-109 (382)
154 PTZ00445 p36-lilke protein; Pr 66.8 15 0.00032 33.5 5.7 66 43-127 29-96 (219)
155 PRK08207 coproporphyrinogen II 66.5 14 0.00031 38.2 6.4 32 105-136 301-333 (488)
156 cd04747 OYE_like_5_FMN Old yel 65.2 86 0.0019 31.1 11.4 28 108-137 77-104 (361)
157 cd02803 OYE_like_FMN_family Ol 65.1 33 0.00072 33.2 8.5 29 108-138 76-104 (327)
158 PRK08208 coproporphyrinogen II 64.9 13 0.00028 37.9 5.7 31 107-137 175-206 (430)
159 cd07944 DRE_TIM_HOA_like 4-hyd 64.5 49 0.0011 31.2 9.2 38 199-237 138-176 (266)
160 TIGR00539 hemN_rel putative ox 63.1 16 0.00034 36.2 5.8 34 104-137 131-165 (360)
161 TIGR03471 HpnJ hopanoid biosyn 62.4 18 0.00038 37.3 6.3 29 107-135 321-349 (472)
162 TIGR00612 ispG_gcpE 1-hydroxy- 62.2 23 0.00051 34.4 6.4 100 23-127 18-126 (346)
163 TIGR00217 malQ 4-alpha-glucano 62.1 12 0.00026 39.0 4.8 97 200-317 293-415 (513)
164 TIGR01211 ELP3 histone acetylt 61.5 13 0.00028 38.8 5.0 64 46-136 206-269 (522)
165 PRK05904 coproporphyrinogen II 61.2 16 0.00035 36.1 5.4 32 105-136 135-167 (353)
166 PRK05660 HemN family oxidoredu 61.1 19 0.0004 36.0 6.0 63 47-136 108-171 (378)
167 COG0821 gcpE 1-hydroxy-2-methy 60.4 26 0.00056 34.0 6.3 95 23-127 20-128 (361)
168 COG2342 Predicted extracellula 60.2 1.1E+02 0.0024 29.1 10.2 123 42-225 29-151 (300)
169 cd04734 OYE_like_3_FMN Old yel 60.1 1.2E+02 0.0026 29.9 11.3 28 108-137 76-103 (343)
170 TIGR00433 bioB biotin syntheta 59.7 24 0.00051 33.7 6.2 28 106-133 155-182 (296)
171 cd05014 SIS_Kpsf KpsF-like pro 59.6 25 0.00054 28.6 5.6 61 49-127 19-79 (128)
172 TIGR01212 radical SAM protein, 59.6 48 0.001 32.0 8.3 26 107-132 161-186 (302)
173 COG1902 NemA NADH:flavin oxido 59.0 1.9E+02 0.0042 28.7 14.8 28 108-137 82-109 (363)
174 cd07940 DRE_TIM_IPMS 2-isoprop 58.8 67 0.0015 30.3 9.1 38 199-237 143-181 (268)
175 COG1242 Predicted Fe-S oxidore 58.7 34 0.00073 32.4 6.6 26 107-132 166-191 (312)
176 PRK08195 4-hyroxy-2-oxovalerat 58.7 65 0.0014 31.6 9.1 37 199-236 144-181 (337)
177 PRK13347 coproporphyrinogen II 58.6 22 0.00048 36.4 6.1 33 104-136 183-216 (453)
178 PF13380 CoA_binding_2: CoA bi 58.5 24 0.00052 28.7 5.2 23 42-64 65-87 (116)
179 TIGR00542 hxl6Piso_put hexulos 58.4 21 0.00045 33.8 5.5 53 44-126 17-69 (279)
180 cd00019 AP2Ec AP endonuclease 58.3 1.6E+02 0.0035 27.6 12.4 53 44-127 11-64 (279)
181 KOG0496 Beta-galactosidase [Ca 58.3 21 0.00045 37.7 5.8 68 41-135 47-114 (649)
182 PF01373 Glyco_hydro_14: Glyco 58.3 18 0.00039 36.2 5.1 70 39-137 12-81 (402)
183 COG1306 Uncharacterized conser 58.2 35 0.00075 32.6 6.6 140 41-225 75-221 (400)
184 PRK05692 hydroxymethylglutaryl 58.2 59 0.0013 31.1 8.6 38 199-237 155-193 (287)
185 PLN02803 beta-amylase 57.9 37 0.00079 35.1 7.3 66 43-137 107-172 (548)
186 PF01136 Peptidase_U32: Peptid 57.7 1.5E+02 0.0033 27.0 11.3 35 199-235 156-190 (233)
187 TIGR00538 hemN oxygen-independ 57.6 21 0.00046 36.6 5.8 32 105-136 183-215 (455)
188 PRK01060 endonuclease IV; Prov 57.4 19 0.00041 34.0 5.1 53 42-125 11-63 (281)
189 PRK00366 ispG 4-hydroxy-3-meth 56.9 41 0.00089 33.0 7.1 100 23-127 26-135 (360)
190 PRK08599 coproporphyrinogen II 56.2 21 0.00045 35.6 5.3 34 104-137 131-165 (377)
191 cd06543 GH18_PF-ChiA-like PF-C 56.2 1E+02 0.0022 29.7 9.8 31 195-225 86-116 (294)
192 PRK06256 biotin synthase; Vali 55.2 20 0.00044 34.9 5.0 34 98-133 178-211 (336)
193 cd02930 DCR_FMN 2,4-dienoyl-Co 54.9 1.5E+02 0.0033 29.2 11.2 29 107-137 75-103 (353)
194 cd07938 DRE_TIM_HMGL 3-hydroxy 54.1 80 0.0017 30.0 8.7 73 109-237 114-187 (274)
195 PRK13209 L-xylulose 5-phosphat 54.0 1.8E+02 0.0039 27.2 11.3 54 44-127 22-75 (283)
196 TIGR03217 4OH_2_O_val_ald 4-hy 53.9 82 0.0018 30.9 9.0 37 199-236 143-180 (333)
197 COG0520 csdA Selenocysteine ly 53.9 12 0.00026 37.8 3.2 39 97-136 168-208 (405)
198 PRK08446 coproporphyrinogen II 53.8 34 0.00073 33.7 6.3 33 104-136 129-162 (350)
199 PRK01278 argD acetylornithine 53.6 33 0.00073 34.0 6.4 28 108-135 195-222 (389)
200 cd08560 GDPD_EcGlpQ_like_1 Gly 53.5 14 0.0003 36.6 3.5 21 110-130 279-299 (356)
201 PRK09249 coproporphyrinogen II 53.4 31 0.00068 35.3 6.3 33 105-137 183-216 (453)
202 cd07939 DRE_TIM_NifV Streptomy 53.4 94 0.002 29.1 9.0 38 199-237 139-177 (259)
203 cd07937 DRE_TIM_PC_TC_5S Pyruv 53.4 1.1E+02 0.0023 29.1 9.5 39 199-238 149-188 (275)
204 PRK13523 NADPH dehydrogenase N 53.3 1.1E+02 0.0023 30.1 9.7 71 43-137 37-107 (337)
205 PF13956 Ibs_toxin: Toxin Ibs, 53.0 11 0.00024 19.8 1.4 16 2-17 3-18 (19)
206 cd00945 Aldolase_Class_I Class 52.7 46 0.00099 29.2 6.6 25 42-66 64-88 (201)
207 PF09196 DUF1953: Domain of un 52.6 16 0.00035 25.3 2.6 45 377-421 2-50 (66)
208 PRK07379 coproporphyrinogen II 52.4 27 0.00059 35.1 5.5 33 104-136 146-179 (400)
209 PLN02801 beta-amylase 51.7 52 0.0011 33.9 7.2 69 40-137 34-102 (517)
210 cd02932 OYE_YqiM_FMN Old yello 51.3 2.4E+02 0.0053 27.4 12.1 28 108-137 76-103 (336)
211 cd00615 Orn_deC_like Ornithine 51.0 12 0.00027 35.7 2.7 28 104-131 165-192 (294)
212 cd02877 GH18_hevamine_XipI_cla 50.8 61 0.0013 30.9 7.3 22 107-128 57-78 (280)
213 PLN02389 biotin synthase 49.1 53 0.0011 32.9 6.8 27 107-133 211-237 (379)
214 cd06450 DOPA_deC_like DOPA dec 49.1 26 0.00056 34.0 4.7 31 103-133 159-189 (345)
215 PRK10605 N-ethylmaleimide redu 48.6 1.5E+02 0.0032 29.4 10.0 29 108-138 78-106 (362)
216 PRK13384 delta-aminolevulinic 48.6 87 0.0019 30.3 7.8 67 41-135 59-127 (322)
217 PRK06294 coproporphyrinogen II 48.4 37 0.0008 33.8 5.7 30 107-136 137-167 (370)
218 KOG0053 Cystathionine beta-lya 48.2 32 0.0007 34.5 5.1 30 103-132 173-202 (409)
219 PF00682 HMGL-like: HMGL-like 48.1 95 0.0021 28.4 8.1 37 199-236 137-174 (237)
220 PRK06582 coproporphyrinogen II 47.5 43 0.00093 33.6 6.0 35 103-137 141-175 (390)
221 PF07071 DUF1341: Protein of u 47.5 52 0.0011 29.6 5.7 44 45-125 137-180 (218)
222 TIGR03586 PseI pseudaminic aci 47.5 59 0.0013 31.8 6.7 128 37-242 11-139 (327)
223 COG1874 LacA Beta-galactosidas 47.4 31 0.00067 37.1 5.1 61 43-131 30-90 (673)
224 PLN02905 beta-amylase 47.3 66 0.0014 34.0 7.2 69 40-137 283-351 (702)
225 cd07943 DRE_TIM_HOA 4-hydroxy- 47.2 1.1E+02 0.0025 28.6 8.6 38 199-237 141-179 (263)
226 PRK14457 ribosomal RNA large s 46.7 68 0.0015 31.6 7.1 55 41-126 269-323 (345)
227 PLN00197 beta-amylase; Provisi 46.3 69 0.0015 33.4 7.1 68 41-137 125-192 (573)
228 PRK12581 oxaloacetate decarbox 46.2 1.3E+02 0.0028 31.0 9.1 41 197-238 161-202 (468)
229 PF03644 Glyco_hydro_85: Glyco 46.2 40 0.00086 32.7 5.3 20 112-131 45-64 (311)
230 PRK05939 hypothetical protein; 46.0 28 0.0006 35.0 4.4 33 98-131 138-170 (397)
231 PRK09856 fructoselysine 3-epim 45.8 50 0.0011 30.9 6.0 51 44-126 14-64 (275)
232 PRK12928 lipoyl synthase; Prov 45.8 68 0.0015 30.8 6.8 64 40-130 216-279 (290)
233 PRK09028 cystathionine beta-ly 45.8 29 0.00062 34.9 4.4 34 98-132 153-186 (394)
234 PRK05093 argD bifunctional N-s 45.3 56 0.0012 32.7 6.5 30 107-136 203-232 (403)
235 PLN02161 beta-amylase 45.0 79 0.0017 32.6 7.3 69 40-137 114-182 (531)
236 PRK09852 cryptic 6-phospho-bet 44.9 44 0.00096 34.5 5.7 65 41-130 69-133 (474)
237 PF08533 Glyco_hydro_42C: Beta 44.9 21 0.00046 24.9 2.5 31 392-422 11-42 (58)
238 PLN02746 hydroxymethylglutaryl 44.8 1.3E+02 0.0028 29.7 8.7 39 198-237 196-235 (347)
239 TIGR02026 BchE magnesium-proto 44.6 51 0.0011 34.2 6.2 31 106-136 320-350 (497)
240 COG1809 (2R)-phospho-3-sulfola 44.5 49 0.0011 30.2 5.1 22 108-129 118-139 (258)
241 PF02836 Glyco_hydro_2_C: Glyc 44.4 2.4E+02 0.0051 26.8 10.5 39 24-62 14-55 (298)
242 PRK09057 coproporphyrinogen II 44.4 40 0.00086 33.6 5.2 31 106-136 137-167 (380)
243 PF01791 DeoC: DeoC/LacD famil 44.4 19 0.00041 33.2 2.8 25 108-132 111-135 (236)
244 TIGR03569 NeuB_NnaB N-acetylne 43.9 57 0.0012 31.9 6.0 128 37-242 10-138 (329)
245 PLN02705 beta-amylase 43.8 75 0.0016 33.5 7.0 68 41-137 266-333 (681)
246 cd03320 OSBS o-Succinylbenzoat 43.7 57 0.0012 30.6 6.0 87 41-128 139-233 (263)
247 PRK14453 chloramphenicol/florf 43.7 88 0.0019 30.9 7.4 67 25-127 254-324 (347)
248 PRK05799 coproporphyrinogen II 43.6 47 0.001 33.0 5.6 32 106-137 132-164 (374)
249 PF00155 Aminotran_1_2: Aminot 43.3 55 0.0012 31.9 6.1 66 39-137 129-196 (363)
250 PRK05967 cystathionine beta-ly 43.2 31 0.00067 34.7 4.2 35 97-132 155-189 (395)
251 TIGR03127 RuMP_HxlB 6-phospho 42.9 65 0.0014 28.1 5.9 56 49-127 49-104 (179)
252 COG1168 MalY Bifunctional PLP- 42.8 27 0.00058 34.5 3.5 85 39-130 90-199 (388)
253 PLN02849 beta-glucosidase 41.9 50 0.0011 34.4 5.6 66 41-134 77-142 (503)
254 PF13378 MR_MLE_C: Enolase C-t 41.8 11 0.00024 30.1 0.7 34 94-127 18-51 (111)
255 COG1891 Uncharacterized protei 41.7 15 0.00033 32.1 1.5 22 107-128 165-186 (235)
256 cd03174 DRE_TIM_metallolyase D 41.5 1.3E+02 0.0029 27.8 8.1 38 199-237 146-184 (265)
257 COG2200 Rtn c-di-GMP phosphodi 41.5 46 0.001 31.1 4.9 76 40-132 133-216 (256)
258 cd06548 GH18_chitinase The GH1 41.4 33 0.00072 33.3 4.0 29 193-221 105-133 (322)
259 cd07945 DRE_TIM_CMS Leptospira 41.3 2.2E+02 0.0048 27.1 9.5 38 199-237 147-185 (280)
260 TIGR01324 cysta_beta_ly_B cyst 41.2 37 0.0008 33.9 4.4 34 98-132 142-175 (377)
261 cd02876 GH18_SI-CLP Stabilin-1 41.0 32 0.0007 33.3 3.9 30 192-221 87-116 (318)
262 PF02679 ComA: (2R)-phospho-3- 40.9 73 0.0016 29.7 6.0 79 108-247 53-134 (244)
263 cd06549 GH18_trifunctional GH1 40.9 32 0.0007 33.0 3.8 32 192-223 83-114 (298)
264 cd06502 TA_like Low-specificit 40.4 30 0.00065 33.3 3.6 24 107-130 144-167 (338)
265 PRK08255 salicylyl-CoA 5-hydro 40.3 4E+02 0.0087 29.4 12.6 29 108-138 474-503 (765)
266 cd01335 Radical_SAM Radical SA 40.1 43 0.00092 28.9 4.3 32 104-135 120-151 (204)
267 cd05008 SIS_GlmS_GlmD_1 SIS (S 39.8 66 0.0014 26.0 5.1 25 103-127 54-78 (126)
268 COG0041 PurE Phosphoribosylcar 39.7 37 0.0008 29.1 3.4 52 40-129 13-64 (162)
269 cd02879 GH18_plant_chitinase_c 39.7 34 0.00074 32.9 3.8 30 193-222 88-117 (299)
270 PRK11059 regulatory protein Cs 39.4 42 0.00091 36.0 4.8 76 40-132 530-613 (640)
271 PRK09058 coproporphyrinogen II 39.4 67 0.0015 32.9 6.1 31 106-136 196-227 (449)
272 TIGR00106 uncharacterized prot 39.3 1.1E+02 0.0025 24.0 6.0 55 44-134 20-79 (97)
273 PF13407 Peripla_BP_4: Peripla 39.1 65 0.0014 29.4 5.5 47 40-127 39-85 (257)
274 PF07488 Glyco_hydro_67M: Glyc 38.9 1.1E+02 0.0024 29.4 6.8 103 41-221 55-158 (328)
275 cd07941 DRE_TIM_LeuA3 Desulfob 38.8 2E+02 0.0042 27.2 8.8 38 199-237 151-189 (273)
276 PRK11194 ribosomal RNA large s 38.8 1.1E+02 0.0024 30.5 7.2 56 41-127 276-331 (372)
277 PRK08898 coproporphyrinogen II 38.8 56 0.0012 32.8 5.3 64 47-137 123-186 (394)
278 smart00729 Elp3 Elongator prot 38.8 67 0.0015 28.0 5.4 30 106-135 133-163 (216)
279 COG0134 TrpC Indole-3-glycerol 38.7 39 0.00084 31.7 3.8 23 107-129 141-163 (254)
280 PRK04302 triosephosphate isome 38.7 70 0.0015 29.2 5.6 21 108-128 100-120 (223)
281 cd04824 eu_ALAD_PBGS_cysteine_ 38.6 1.4E+02 0.003 28.9 7.4 69 41-135 49-120 (320)
282 smart00636 Glyco_18 Glycosyl h 38.4 39 0.00084 32.8 4.0 31 192-222 86-116 (334)
283 cd02933 OYE_like_FMN Old yello 38.3 2.2E+02 0.0048 27.9 9.3 28 108-137 76-103 (338)
284 PF15640 Tox-MPTase4: Metallop 38.0 35 0.00075 28.1 2.9 26 103-128 16-41 (132)
285 cd04795 SIS SIS domain. SIS (S 38.0 35 0.00077 25.3 3.0 25 103-127 55-79 (87)
286 PRK08247 cystathionine gamma-s 38.0 44 0.00096 33.0 4.4 29 103-131 147-175 (366)
287 TIGR03537 DapC succinyldiamino 38.0 82 0.0018 30.7 6.3 28 107-134 154-181 (350)
288 PRK09064 5-aminolevulinate syn 37.9 49 0.0011 33.1 4.8 30 103-132 189-218 (407)
289 TIGR03246 arg_catab_astC succi 37.8 75 0.0016 31.8 6.1 29 107-135 198-226 (397)
290 PRK07050 cystathionine beta-ly 37.8 43 0.00092 33.6 4.3 31 103-133 161-191 (394)
291 PLN02509 cystathionine beta-ly 37.6 45 0.00097 34.4 4.4 32 99-131 225-256 (464)
292 PRK15014 6-phospho-beta-glucos 37.4 74 0.0016 32.9 6.0 65 41-130 67-131 (477)
293 cd00954 NAL N-Acetylneuraminic 36.9 1.1E+02 0.0023 29.2 6.8 27 40-66 80-106 (288)
294 TIGR03581 EF_0839 conserved hy 36.8 69 0.0015 29.2 4.9 22 45-66 137-158 (236)
295 PRK14462 ribosomal RNA large s 36.5 1.2E+02 0.0025 30.1 7.0 64 25-127 269-332 (356)
296 PF09260 DUF1966: Domain of un 36.4 89 0.0019 24.3 4.9 24 379-402 1-27 (91)
297 smart00733 Mterf Mitochondrial 36.3 28 0.00061 19.9 1.7 17 42-58 15-31 (31)
298 PF01276 OKR_DC_1: Orn/Lys/Arg 36.2 13 0.00028 37.6 0.3 29 102-130 177-205 (417)
299 cd03413 CbiK_C Anaerobic cobal 36.1 69 0.0015 25.5 4.4 23 44-66 43-65 (103)
300 PRK14455 ribosomal RNA large s 36.1 1.1E+02 0.0023 30.4 6.7 21 107-127 311-331 (356)
301 TIGR01821 5aminolev_synth 5-am 35.9 54 0.0012 32.7 4.7 30 103-132 188-217 (402)
302 PF00202 Aminotran_3: Aminotra 35.8 82 0.0018 30.8 5.9 62 45-138 166-227 (339)
303 cd07948 DRE_TIM_HCS Saccharomy 35.7 2.8E+02 0.0062 26.0 9.2 37 200-237 142-179 (262)
304 PRK09331 Sep-tRNA:Cys-tRNA syn 35.6 38 0.00081 33.8 3.5 34 98-132 165-198 (387)
305 cd00614 CGS_like CGS_like: Cys 35.6 33 0.00071 34.0 3.1 32 99-131 133-164 (369)
306 PF03932 CutC: CutC family; I 35.5 1.1E+02 0.0025 27.5 6.2 56 41-133 70-125 (201)
307 cd06452 SepCysS Sep-tRNA:Cys-t 35.5 31 0.00068 33.8 2.9 33 99-132 147-179 (361)
308 cd00308 enolase_like Enolase-s 35.5 46 0.001 30.4 3.8 86 41-127 106-201 (229)
309 cd06454 KBL_like KBL_like; thi 35.4 33 0.00071 33.2 3.0 29 103-131 143-171 (349)
310 cd02872 GH18_chitolectin_chito 35.3 42 0.00092 33.0 3.8 30 192-221 91-120 (362)
311 cd04823 ALAD_PBGS_aspartate_ri 35.1 1.8E+02 0.004 28.1 7.7 69 41-135 52-122 (320)
312 cd03322 rpsA The starvation se 35.0 1.1E+02 0.0023 30.4 6.5 86 41-127 175-270 (361)
313 TIGR01928 menC_lowGC/arch o-su 34.8 40 0.00086 32.8 3.4 35 93-127 245-279 (324)
314 PRK07269 cystathionine gamma-s 34.6 36 0.00078 33.7 3.1 29 103-131 147-175 (364)
315 PRK11145 pflA pyruvate formate 34.5 92 0.002 28.7 5.7 20 107-126 226-245 (246)
316 PLN03227 serine palmitoyltrans 34.3 83 0.0018 31.5 5.7 29 104-132 150-178 (392)
317 PRK05942 aspartate aminotransf 34.3 93 0.002 30.9 6.1 29 107-135 188-216 (394)
318 TIGR03849 arch_ComA phosphosul 34.1 1.6E+02 0.0035 27.3 7.0 50 197-247 69-121 (237)
319 PRK13393 5-aminolevulinate syn 34.0 73 0.0016 31.9 5.3 33 99-132 185-217 (406)
320 cd05005 SIS_PHI Hexulose-6-pho 33.9 1.3E+02 0.0028 26.2 6.3 25 103-127 83-107 (179)
321 PF00704 Glyco_hydro_18: Glyco 33.9 48 0.001 32.1 3.9 33 194-226 96-128 (343)
322 smart00518 AP2Ec AP endonuclea 33.8 1.1E+02 0.0024 28.6 6.2 53 44-127 11-63 (273)
323 PF01261 AP_endonuc_2: Xylose 33.7 24 0.00051 31.2 1.6 45 49-127 1-45 (213)
324 PRK08445 hypothetical protein; 33.5 73 0.0016 31.4 5.1 32 103-134 176-207 (348)
325 cd00609 AAT_like Aspartate ami 33.4 43 0.00093 32.1 3.5 28 107-134 150-177 (350)
326 PRK05968 hypothetical protein; 33.4 57 0.0012 32.6 4.4 32 99-131 155-186 (389)
327 TIGR01140 L_thr_O3P_dcar L-thr 33.1 43 0.00092 32.5 3.3 29 107-135 143-171 (330)
328 PRK13397 3-deoxy-7-phosphohept 33.0 2E+02 0.0044 26.9 7.6 24 107-130 64-87 (250)
329 COG0436 Aspartate/tyrosine/aro 33.0 46 0.00099 33.4 3.6 31 107-137 181-211 (393)
330 TIGR02539 SepCysS Sep-tRNA:Cys 32.9 41 0.00089 33.2 3.3 34 98-132 153-186 (370)
331 TIGR03699 mena_SCO4550 menaqui 32.8 47 0.001 32.5 3.6 31 103-133 175-205 (340)
332 COG2876 AroA 3-deoxy-D-arabino 32.7 1.6E+02 0.0034 27.9 6.6 62 40-130 56-117 (286)
333 cd05017 SIS_PGI_PMI_1 The memb 32.4 48 0.001 26.8 3.0 25 103-127 51-75 (119)
334 PRK13561 putative diguanylate 32.3 73 0.0016 34.1 5.3 73 40-132 531-614 (651)
335 PRK07811 cystathionine gamma-s 32.2 41 0.00088 33.7 3.1 33 99-132 154-186 (388)
336 TIGR02090 LEU1_arch isopropylm 32.1 2.8E+02 0.0061 27.4 9.0 39 199-238 141-180 (363)
337 TIGR01814 kynureninase kynuren 31.9 38 0.00083 33.9 2.9 33 97-130 177-209 (406)
338 PRK08960 hypothetical protein; 31.8 53 0.0011 32.6 3.9 29 107-135 183-211 (387)
339 PRK00278 trpC indole-3-glycero 31.8 57 0.0012 30.7 3.8 24 107-130 145-168 (260)
340 cd01494 AAT_I Aspartate aminot 31.7 39 0.00086 28.2 2.6 32 104-135 104-135 (170)
341 PRK12381 bifunctional succinyl 31.7 1.1E+02 0.0025 30.5 6.3 28 108-135 203-230 (406)
342 TIGR02351 thiH thiazole biosyn 31.7 74 0.0016 31.6 4.8 26 107-132 199-225 (366)
343 cd01299 Met_dep_hydrolase_A Me 31.5 1.7E+02 0.0037 28.2 7.4 61 41-127 118-178 (342)
344 cd02878 GH18_zymocin_alpha Zym 31.5 53 0.0012 32.3 3.7 29 194-222 88-116 (345)
345 cd00617 Tnase_like Tryptophana 31.4 52 0.0011 33.5 3.7 24 107-130 171-194 (431)
346 TIGR01329 cysta_beta_ly_E cyst 31.3 42 0.0009 33.4 3.0 32 99-131 139-170 (378)
347 PLN02651 cysteine desulfurase 31.3 43 0.00093 32.9 3.1 37 94-131 141-177 (364)
348 PLN00145 tyrosine/nicotianamin 31.3 51 0.0011 33.4 3.7 29 107-135 208-236 (430)
349 PRK03170 dihydrodipicolinate s 31.1 1.3E+02 0.0029 28.6 6.3 27 40-66 80-106 (292)
350 PRK07324 transaminase; Validat 30.9 81 0.0018 31.2 5.0 28 107-134 171-198 (373)
351 PRK14467 ribosomal RNA large s 30.9 1.7E+02 0.0037 28.9 7.1 57 41-127 266-323 (348)
352 PRK07179 hypothetical protein; 30.9 1E+02 0.0022 30.8 5.8 29 103-131 192-220 (407)
353 PRK07812 O-acetylhomoserine am 30.8 42 0.00092 34.2 3.0 34 97-131 161-194 (436)
354 cd00953 KDG_aldolase KDG (2-ke 30.8 1.5E+02 0.0033 28.1 6.6 27 40-66 75-101 (279)
355 PLN02822 serine palmitoyltrans 30.8 95 0.0021 32.1 5.6 32 103-134 256-287 (481)
356 PLN00175 aminotransferase fami 30.7 57 0.0012 32.8 3.9 29 107-135 205-233 (413)
357 TIGR02660 nifV_homocitr homoci 30.6 3E+02 0.0065 27.2 8.9 38 199-237 142-180 (365)
358 PLN02808 alpha-galactosidase 30.4 95 0.002 31.1 5.2 63 338-403 261-331 (386)
359 PF00232 Glyco_hydro_1: Glycos 30.4 87 0.0019 32.1 5.2 67 41-134 56-122 (455)
360 COG1441 MenC O-succinylbenzoat 30.4 53 0.0011 30.2 3.1 30 102-131 237-266 (321)
361 TIGR00510 lipA lipoate synthas 30.4 1.7E+02 0.0037 28.2 6.9 62 40-128 219-280 (302)
362 PLN02607 1-aminocyclopropane-1 30.3 1.6E+02 0.0035 30.0 7.2 28 107-134 218-245 (447)
363 cd03315 MLE_like Muconate lact 30.2 50 0.0011 31.0 3.2 88 40-128 140-237 (265)
364 COG1105 FruK Fructose-1-phosph 30.2 58 0.0013 31.5 3.6 24 107-130 144-167 (310)
365 TIGR01325 O_suc_HS_sulf O-succ 30.0 44 0.00096 33.2 2.9 33 99-132 147-179 (380)
366 PRK08776 cystathionine gamma-s 29.8 47 0.001 33.5 3.1 33 99-132 153-185 (405)
367 COG0794 GutQ Predicted sugar p 29.7 1.5E+02 0.0032 26.9 5.8 66 43-127 50-118 (202)
368 TIGR03799 NOD_PanD_pyr putativ 29.7 80 0.0017 33.1 4.8 30 103-132 276-305 (522)
369 KOG0256 1-aminocyclopropane-1- 29.5 1.3E+02 0.0028 30.3 5.8 27 108-134 245-271 (471)
370 PRK14012 cysteine desulfurase; 29.4 64 0.0014 32.2 4.0 34 97-131 150-183 (404)
371 PF04914 DltD_C: DltD C-termin 29.4 80 0.0017 26.4 3.9 57 42-129 35-95 (130)
372 PRK07671 cystathionine beta-ly 29.2 51 0.0011 32.8 3.2 32 100-132 143-174 (377)
373 TIGR01265 tyr_nico_aTase tyros 29.2 63 0.0014 32.3 3.9 33 103-135 180-215 (403)
374 PRK15029 arginine decarboxylas 29.1 41 0.00088 36.8 2.6 29 102-130 321-349 (755)
375 PF00879 Defensin_propep: Defe 29.1 45 0.00097 23.0 1.9 33 1-33 1-49 (52)
376 cd00950 DHDPS Dihydrodipicolin 29.0 1.5E+02 0.0032 28.1 6.3 27 40-66 79-105 (284)
377 TIGR01927 menC_gamma/gm+ o-suc 29.0 53 0.0011 31.7 3.2 36 93-128 228-263 (307)
378 PRK06108 aspartate aminotransf 28.9 68 0.0015 31.5 4.1 29 107-135 176-204 (382)
379 cd08577 PI-PLCc_GDPD_SF_unchar 28.9 68 0.0015 29.6 3.7 25 108-132 184-208 (228)
380 PF11777 DUF3316: Protein of u 28.8 22 0.00047 28.9 0.4 19 1-19 1-19 (114)
381 PRK09283 delta-aminolevulinic 28.8 5.5E+02 0.012 25.0 10.9 67 41-135 57-125 (323)
382 PRK05958 8-amino-7-oxononanoat 28.7 46 0.001 32.6 2.8 29 103-131 179-207 (385)
383 PLN02187 rooty/superroot1 28.7 62 0.0014 33.2 3.8 29 107-135 222-250 (462)
384 PRK09856 fructoselysine 3-epim 28.6 89 0.0019 29.2 4.6 60 42-129 89-149 (275)
385 PRK12595 bifunctional 3-deoxy- 28.6 2.1E+02 0.0046 28.4 7.3 60 41-129 130-189 (360)
386 TIGR01822 2am3keto_CoA 2-amino 28.6 51 0.0011 32.6 3.1 29 103-131 181-209 (393)
387 PRK07568 aspartate aminotransf 28.6 60 0.0013 32.2 3.6 29 107-135 180-208 (397)
388 KOG2730 Methylase [General fun 28.5 59 0.0013 29.8 3.1 27 39-66 149-175 (263)
389 TIGR02666 moaA molybdenum cofa 28.5 1.6E+02 0.0034 28.7 6.5 29 103-131 133-162 (334)
390 COG0826 Collagenase and relate 28.4 60 0.0013 32.0 3.5 23 108-130 48-70 (347)
391 COG1533 SplB DNA repair photol 28.4 1.6E+02 0.0035 28.3 6.4 59 40-135 166-225 (297)
392 PTZ00376 aspartate aminotransf 28.4 65 0.0014 32.2 3.9 30 107-136 194-223 (404)
393 PRK13392 5-aminolevulinate syn 28.3 99 0.0021 30.9 5.2 33 99-132 186-218 (410)
394 KOG1165 Casein kinase (serine/ 28.1 91 0.002 30.7 4.4 20 331-350 75-95 (449)
395 PRK13397 3-deoxy-7-phosphohept 28.1 5.1E+02 0.011 24.3 10.3 64 40-136 133-196 (250)
396 PRK11858 aksA trans-homoaconit 27.8 3.7E+02 0.008 26.8 9.0 38 199-237 145-183 (378)
397 PRK04366 glycine dehydrogenase 27.8 67 0.0015 33.2 3.9 28 103-130 218-246 (481)
398 PRK07777 aminotransferase; Val 27.8 65 0.0014 31.9 3.7 29 107-135 177-205 (387)
399 TIGR01437 selA_rel uncharacter 27.6 50 0.0011 32.6 2.8 29 104-132 161-189 (363)
400 PRK06939 2-amino-3-ketobutyrat 27.6 53 0.0011 32.4 3.0 30 103-132 185-214 (397)
401 cd03321 mandelate_racemase Man 27.6 1.5E+02 0.0033 29.1 6.2 85 41-126 198-292 (355)
402 PLN02591 tryptophan synthase 27.6 2E+02 0.0044 26.9 6.7 27 108-134 117-143 (250)
403 cd05710 SIS_1 A subgroup of th 27.5 67 0.0014 26.0 3.1 25 103-127 55-79 (120)
404 PTZ00242 protein tyrosine phos 27.5 95 0.0021 27.0 4.2 20 44-63 28-47 (166)
405 PRK07810 O-succinylhomoserine 27.4 54 0.0012 33.0 3.1 34 98-132 162-195 (403)
406 cd03317 NAAAR N-acylamino acid 27.4 60 0.0013 31.9 3.3 33 95-127 252-284 (354)
407 cd04724 Tryptophan_synthase_al 27.3 1.6E+02 0.0035 27.3 6.0 26 108-133 115-140 (242)
408 PRK15108 biotin synthase; Prov 27.2 1.9E+02 0.0042 28.4 6.8 28 106-133 168-195 (345)
409 cd00384 ALAD_PBGS Porphobilino 27.2 2.6E+02 0.0056 27.1 7.2 67 41-135 49-117 (314)
410 PRK13237 tyrosine phenol-lyase 27.2 67 0.0015 32.9 3.6 23 108-130 197-219 (460)
411 TIGR01976 am_tr_V_VC1184 cyste 27.2 54 0.0012 32.5 3.0 35 95-130 160-194 (397)
412 cd02873 GH18_IDGF The IDGF's ( 27.1 71 0.0015 32.3 3.8 29 192-220 100-128 (413)
413 TIGR03235 DNA_S_dndA cysteine 27.1 55 0.0012 31.9 3.0 37 97-134 144-182 (353)
414 TIGR03700 mena_SCO4494 putativ 27.1 1E+02 0.0022 30.4 4.9 34 99-133 179-212 (351)
415 PF01565 FAD_binding_4: FAD bi 27.1 79 0.0017 26.1 3.6 21 107-127 9-29 (139)
416 TIGR03551 F420_cofH 7,8-dideme 27.0 90 0.0019 30.6 4.5 28 107-134 177-204 (343)
417 PRK08133 O-succinylhomoserine 27.0 56 0.0012 32.7 3.1 33 99-132 154-186 (390)
418 PRK08064 cystathionine beta-ly 27.0 60 0.0013 32.5 3.3 33 98-131 145-177 (390)
419 TIGR03620 F420_MSMEG_4141 prob 26.9 79 0.0017 30.1 3.9 28 39-66 233-260 (278)
420 cd05013 SIS_RpiR RpiR-like pro 26.8 73 0.0016 25.8 3.3 25 103-127 68-92 (139)
421 PRK14463 ribosomal RNA large s 26.8 2E+02 0.0044 28.4 6.8 55 42-127 265-319 (349)
422 TIGR02006 IscS cysteine desulf 26.7 57 0.0012 32.6 3.1 34 97-131 148-181 (402)
423 TIGR00674 dapA dihydrodipicoli 26.7 1.5E+02 0.0033 28.1 5.9 27 40-66 77-103 (285)
424 PRK09082 methionine aminotrans 26.7 75 0.0016 31.5 3.9 33 103-135 174-209 (386)
425 TIGR03392 FeS_syn_CsdA cystein 26.5 51 0.0011 32.8 2.7 34 97-131 163-196 (398)
426 PLN02368 alanine transaminase 26.5 74 0.0016 32.1 3.8 29 107-135 228-256 (407)
427 PRK06348 aspartate aminotransf 26.4 72 0.0016 31.6 3.7 29 107-135 180-208 (384)
428 TIGR03539 DapC_actino succinyl 26.3 65 0.0014 31.5 3.4 29 107-135 160-188 (357)
429 PRK07503 methionine gamma-lyas 26.3 57 0.0012 32.8 3.0 32 100-132 159-190 (403)
430 TIGR02631 xylA_Arthro xylose i 26.3 1.4E+02 0.0031 29.8 5.7 55 43-127 32-86 (382)
431 TIGR00858 bioF 8-amino-7-oxono 26.1 60 0.0013 31.4 3.1 30 103-132 157-186 (360)
432 PRK08056 threonine-phosphate d 26.1 81 0.0018 30.8 4.0 29 107-135 160-188 (356)
433 PRK03620 5-dehydro-4-deoxygluc 26.1 1.9E+02 0.0041 27.8 6.4 26 41-66 86-111 (303)
434 cd00958 DhnA Class I fructose- 26.0 76 0.0017 29.1 3.6 23 109-131 109-131 (235)
435 cd03329 MR_like_4 Mandelate ra 26.0 2.3E+02 0.0051 27.9 7.3 84 41-127 201-297 (368)
436 cd06453 SufS_like Cysteine des 25.9 55 0.0012 32.1 2.8 33 98-131 146-178 (373)
437 PRK13511 6-phospho-beta-galact 25.9 97 0.0021 31.9 4.6 68 39-134 50-117 (469)
438 PF01408 GFO_IDH_MocA: Oxidore 25.9 71 0.0015 25.4 3.0 26 103-128 94-119 (120)
439 PLN02656 tyrosine transaminase 25.8 68 0.0015 32.2 3.4 29 107-135 187-215 (409)
440 PRK13238 tnaA tryptophanase/L- 25.7 74 0.0016 32.7 3.7 23 107-129 196-218 (460)
441 PRK06176 cystathionine gamma-s 25.7 61 0.0013 32.3 3.1 33 99-132 142-174 (380)
442 PRK11543 gutQ D-arabinose 5-ph 25.7 1.3E+02 0.0027 29.0 5.2 61 49-127 61-121 (321)
443 PRK09989 hypothetical protein; 25.7 1.1E+02 0.0025 28.3 4.7 61 44-131 86-146 (258)
444 PTZ00125 ornithine aminotransf 25.7 1.2E+02 0.0025 30.2 5.1 29 108-136 198-226 (400)
445 TIGR03301 PhnW-AepZ 2-aminoeth 25.7 79 0.0017 30.5 3.8 31 99-130 133-163 (355)
446 TIGR01233 lacG 6-phospho-beta- 25.5 95 0.0021 32.0 4.4 68 39-134 49-116 (467)
447 COG3669 Alpha-L-fucosidase [Ca 25.5 7.1E+02 0.015 25.1 10.7 64 49-135 60-124 (430)
448 PRK07582 cystathionine gamma-l 25.5 67 0.0015 31.8 3.3 29 103-131 143-171 (366)
449 TIGR01328 met_gam_lyase methio 25.5 65 0.0014 32.3 3.2 32 100-132 153-184 (391)
450 PLN02721 threonine aldolase 25.5 75 0.0016 30.7 3.6 24 108-131 157-180 (353)
451 cd00408 DHDPS-like Dihydrodipi 25.3 1.9E+02 0.0041 27.2 6.2 27 40-66 76-102 (281)
452 PF03711 OKR_DC_1_C: Orn/Lys/A 25.3 40 0.00086 28.4 1.4 38 335-372 81-122 (136)
453 TIGR03550 F420_cofG 7,8-dideme 25.3 1.3E+02 0.0027 29.3 5.1 26 108-133 148-173 (322)
454 PRK08134 O-acetylhomoserine am 25.2 63 0.0014 32.9 3.1 32 99-131 157-188 (433)
455 TIGR00423 radical SAM domain p 25.2 1.3E+02 0.0028 29.0 5.1 28 107-134 143-170 (309)
456 PRK13520 L-tyrosine decarboxyl 25.2 50 0.0011 32.3 2.3 30 103-132 162-191 (371)
457 PLN02624 ornithine-delta-amino 25.2 2E+02 0.0043 29.7 6.7 28 108-135 244-271 (474)
458 PF00266 Aminotran_5: Aminotra 25.2 35 0.00075 33.6 1.2 39 92-131 140-178 (371)
459 COG0011 Uncharacterized conser 25.1 1.2E+02 0.0025 24.1 3.8 56 43-134 21-81 (100)
460 TIGR00474 selA seryl-tRNA(sec) 25.1 51 0.0011 33.9 2.3 23 107-129 230-252 (454)
461 TIGR02127 pyrF_sub2 orotidine 25.0 80 0.0017 29.8 3.5 30 103-132 65-96 (261)
462 PRK13361 molybdenum cofactor b 24.9 1.7E+02 0.0038 28.4 6.0 27 105-131 136-163 (329)
463 PRK05367 glycine dehydrogenase 24.9 53 0.0011 37.1 2.6 30 102-131 215-244 (954)
464 COG0626 MetC Cystathionine bet 24.9 91 0.002 31.4 4.0 76 39-131 113-188 (396)
465 PF09445 Methyltransf_15: RNA 24.8 2.3E+02 0.0051 24.6 6.1 68 40-132 55-122 (163)
466 PRK08175 aminotransferase; Val 24.8 76 0.0016 31.6 3.6 29 107-135 182-210 (395)
467 TIGR02618 tyr_phenol_ly tyrosi 24.8 81 0.0017 32.3 3.7 23 108-130 190-212 (450)
468 TIGR00683 nanA N-acetylneurami 24.7 2.3E+02 0.005 27.0 6.7 27 40-66 80-106 (290)
469 PRK00125 pyrF orotidine 5'-pho 24.7 76 0.0017 30.2 3.3 28 107-134 71-98 (278)
470 PRK06207 aspartate aminotransf 24.7 83 0.0018 31.5 3.8 29 107-135 196-224 (405)
471 PRK13361 molybdenum cofactor b 24.7 1.6E+02 0.0035 28.6 5.7 21 107-127 168-188 (329)
472 smart00052 EAL Putative diguan 24.5 1.1E+02 0.0024 27.5 4.4 76 41-133 131-214 (241)
473 PRK13957 indole-3-glycerol-pho 24.5 90 0.002 29.2 3.7 23 107-129 136-158 (247)
474 PRK05764 aspartate aminotransf 24.5 80 0.0017 31.2 3.7 28 107-134 182-209 (393)
475 PRK05957 aspartate aminotransf 24.4 80 0.0017 31.4 3.7 33 103-135 171-206 (389)
476 TIGR02326 transamin_PhnW 2-ami 24.4 62 0.0014 31.6 2.8 32 98-130 136-167 (363)
477 cd03319 L-Ala-DL-Glu_epimerase 24.3 69 0.0015 30.9 3.1 36 93-128 250-285 (316)
478 cd03318 MLE Muconate Lactonizi 24.3 70 0.0015 31.6 3.1 34 94-127 262-295 (365)
479 PF02571 CbiJ: Precorrin-6x re 24.3 1.1E+02 0.0023 28.7 4.2 24 103-129 50-73 (249)
480 PF12683 DUF3798: Protein of u 24.3 1.8E+02 0.0039 27.5 5.5 54 195-251 181-234 (275)
481 PRK00164 moaA molybdenum cofac 24.2 2E+02 0.0044 27.8 6.4 26 106-131 141-167 (331)
482 TIGR02617 tnaA_trp_ase tryptop 24.2 80 0.0017 32.3 3.5 23 107-129 202-224 (467)
483 PLN02417 dihydrodipicolinate s 24.2 2.2E+02 0.0047 27.0 6.4 26 41-66 81-106 (280)
484 PRK14042 pyruvate carboxylase 24.2 4.3E+02 0.0093 28.2 9.0 41 197-238 152-193 (596)
485 PRK14330 (dimethylallyl)adenos 24.1 1.6E+02 0.0035 29.9 5.8 31 107-137 273-305 (434)
486 PRK08248 O-acetylhomoserine am 24.0 71 0.0015 32.5 3.2 33 99-132 157-189 (431)
487 COG1103 Archaea-specific pyrid 24.0 76 0.0016 30.1 3.0 33 97-130 162-194 (382)
488 KOG0257 Kynurenine aminotransf 24.0 1.1E+02 0.0023 30.8 4.2 95 39-137 100-220 (420)
489 PRK12331 oxaloacetate decarbox 24.0 4E+02 0.0086 27.4 8.5 40 198-238 153-193 (448)
490 PRK07683 aminotransferase A; V 24.0 80 0.0017 31.3 3.5 28 107-134 179-206 (387)
491 TIGR00262 trpA tryptophan synt 23.9 2.3E+02 0.005 26.6 6.4 25 108-132 126-150 (256)
492 PRK06225 aspartate aminotransf 23.9 83 0.0018 31.0 3.6 26 107-132 175-200 (380)
493 PRK04147 N-acetylneuraminate l 23.8 2.5E+02 0.0054 26.8 6.8 27 40-66 83-109 (293)
494 PLN02428 lipoic acid synthase 23.8 2.5E+02 0.0054 27.7 6.8 64 41-131 260-323 (349)
495 PF00218 IGPS: Indole-3-glycer 23.7 93 0.002 29.2 3.7 23 107-129 143-165 (254)
496 PTZ00413 lipoate synthase; Pro 23.7 2.9E+02 0.0063 27.7 7.1 66 39-131 306-371 (398)
497 PLN00143 tyrosine/nicotianamin 23.6 87 0.0019 31.4 3.7 29 107-135 188-216 (409)
498 TIGR01264 tyr_amTase_E tyrosin 23.6 77 0.0017 31.6 3.4 29 107-135 186-214 (401)
499 cd00378 SHMT Serine-glycine hy 23.6 63 0.0014 32.1 2.7 28 103-130 170-197 (402)
500 PRK14041 oxaloacetate decarbox 23.6 4.7E+02 0.01 27.0 9.0 39 198-237 152-191 (467)
No 1
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=2.9e-78 Score=601.64 Aligned_cols=383 Identities=62% Similarity=1.146 Sum_probs=341.0
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
++||+|.|.|++..+.||++++|+++|||||+||||+|||+|++ ++ .++|||++.|||++|+
T Consensus 24 ~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~----------~s--------~s~hGY~~~D~y~ld~ 85 (428)
T PLN00196 24 GQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPS----------HS--------VSEQGYMPGRLYDLDA 85 (428)
T ss_pred CCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCC----------CC--------CCCCCCCccccCCCCc
Confidence 59999999999877778999999999999999999999999999 77 6789999999999993
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGE 182 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (423)
++|||.+||++||++||++||+||+|+|+||++.++.+..+.|..|.++.++++.+|.....+.+...|.++.+++..+.
T Consensus 86 ~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 165 (428)
T PLN00196 86 SKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGA 165 (428)
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCC
Confidence 49999999999999999999999999999999998876666787787777777788877666665556777777777888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEEeecCCCcccCCCccchhh
Q 045962 183 PFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEKWDSLSYRQDGKLDARQ 262 (423)
Q Consensus 183 ~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~~gE~~~~~~~~~~~~~~y~~ 262 (423)
++..+||||++||+|+++|+++++||++++||||||+|+|++++.+|+++++++.+|.|+|||.|.+..+.+.+...|.+
T Consensus 166 ~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~ 245 (428)
T PLN00196 166 DFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQ 245 (428)
T ss_pred CCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccc
Confidence 89999999999999999999999999888999999999999999999999999999999999999876665566777776
Q ss_pred hHHHHHHHHHHHHhCCcc---ccccchhhhHhhhC--------------CCCccCCCCCCceeccCCCCCCCCCCCCCCC
Q 045962 263 DAHRRNLKYWVQAAGRAV---TAFDFTTKGILQAA--------------PPGFIGLLPQNAVTFIDNHDTGSTQRLWPFP 325 (423)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~---~~~df~~~~~l~~~--------------~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~ 325 (423)
+..++.+..|++.+++.. ..|||+++.++..+ ..++...+|..+|+|++||||+|..+.....
T Consensus 246 ~~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~ 325 (428)
T PLN00196 246 NAHRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFP 325 (428)
T ss_pred hhhHHHHHHHHHhcCCccCcceeecccchHHHHHHhcCCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCc
Confidence 777888889999776543 48999988655432 1123456788899999999999998877666
Q ss_pred hhhHHHHHHHHHcCCCceEEecCCCCCchhHHHHHHHHHHHHhcCcccccceEEEeecCCEEEEEECCEEEEEECCCCCc
Q 045962 326 SAKVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGKLAAIRTKNGINTTSRVNILASQSDLYVAAIDDKIITKIGPKMDL 405 (423)
Q Consensus 326 ~~~~~~a~a~~~~~pG~P~iy~G~~~~w~~~~~~~~L~~lR~~~~~l~~g~~~~~~~~~~~~~~~r~~~~lv~in~~~~~ 405 (423)
..+.++|+|++||+||+|+||||+.++|++.+.|++|+++|++++++..|+++.+..++++|+++|+++++|.||...++
T Consensus 326 ~~~~~lAyA~iLT~pG~P~IyYg~~~~~~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~~~~~~~~i~~~~~~ 405 (428)
T PLN00196 326 SDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEIDGKVIVKIGSRYDV 405 (428)
T ss_pred cchHHHHHHHHHcCCCcceEeeCCCcCccHHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEECCEEEEEECCCCCc
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCcCeEEeeccCCCC
Q 045962 406 RNLIPRNFKVATSGKDYA 423 (423)
Q Consensus 406 ~~~~~~~~~~~~~g~~~~ 423 (423)
+.++|++|++++||++||
T Consensus 406 ~~~~~~~~~~~~~g~~~~ 423 (428)
T PLN00196 406 SHLIPEGFQVVAHGNGYA 423 (428)
T ss_pred cccCcccceEEEecCCeE
Confidence 999999999999999997
No 2
>PLN02361 alpha-amylase
Probab=100.00 E-value=6.6e-71 Score=542.47 Aligned_cols=368 Identities=45% Similarity=0.873 Sum_probs=314.6
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
.+||+|.|+|++.. ...+++|+++|+||++|||++|||+|++ ++ .++|||+|.|||++|
T Consensus 11 ~~v~lQ~F~W~~~~--~~~w~~i~~kl~~l~~lG~t~iwl~P~~----------~~--------~~~~GY~~~d~y~~~- 69 (401)
T PLN02361 11 REILLQAFNWESHK--HDWWRNLEGKVPDLAKSGFTSAWLPPPS----------QS--------LAPEGYLPQNLYSLN- 69 (401)
T ss_pred CcEEEEEEeccCCc--cHHHHHHHHHHHHHHHcCCCEEEeCCCC----------cC--------CCCCCCCcccccccC-
Confidence 68999999999864 3589999999999999999999999999 66 678999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGE 182 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (423)
++|||.+||++||++||++||+||+|+|+||++...++..+.|..|.+. +.+|.....+.. ..+..+...+.
T Consensus 70 ~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~----~~~wd~~~~~~~----~~g~~~~~~~~ 141 (401)
T PLN02361 70 SAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGI----PLPWDEHAVTSC----TGGLGNRSTGD 141 (401)
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCC----cCCCCccccccc----cCCCCCccCCC
Confidence 9999999999999999999999999999999976655444445444321 224543222111 11233445566
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEEeecCCCcccC-CCccchh
Q 045962 183 PFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEKWDSLSYRQ-DGKLDAR 261 (423)
Q Consensus 183 ~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~~gE~~~~~~~~~-~~~~~y~ 261 (423)
.+..+||||++||+||++++++++||++++||||||+|+|++++.+||++++++.+|.|+|||.|.+..+.. ++.++|+
T Consensus 142 ~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~ 221 (401)
T PLN02361 142 NFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYN 221 (401)
T ss_pred CCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchh
Confidence 788999999999999999999999888779999999999999999999999999889999999998744432 4458888
Q ss_pred hhHHHHHHHHHHHHhCCccccccchhhhHhhhCC--------------CCccCCCCCCceeccCCCCCCCCCCCCCCChh
Q 045962 262 QDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAP--------------PGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSA 327 (423)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~--------------~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~ 327 (423)
++..++.+..|++.+++..++|||+++..+.++. +.+.+.+|.++|+|++|||++|..+....+..
T Consensus 222 ~~~~~~~l~~~~~~~~~~~~~fDF~l~~~l~~a~~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~ 301 (401)
T PLN02361 222 QDSHRQRIVNWIDGTGGLSAAFDFTTKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSD 301 (401)
T ss_pred hhhHHHHHHHHHHhcCCcceeecHHHHHHHHHHHhhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchH
Confidence 8888899999999888888999999998887652 24456678899999999999999888777778
Q ss_pred hHHHHHHHHHcCCCceEEecCCCCCch--hHHHHHHHHHHHHhcCcccccceEEEeecCCEEEEEECCEEEEEECCCCCc
Q 045962 328 KVMLGYAYILTHPGTPSIFYDHLFDWD--LKKEIGKLAAIRTKNGINTTSRVNILASQSDLYVAAIDDKIITKIGPKMDL 405 (423)
Q Consensus 328 ~~~~a~a~~~~~pG~P~iy~G~~~~w~--~~~~~~~L~~lR~~~~~l~~g~~~~~~~~~~~~~~~r~~~~lv~in~~~~~ 405 (423)
+.++|+|++||+||+|+||||+.++|+ ++++|++|+++||++++++.|+++.+..++++++...+++++|-|+...
T Consensus 302 ~~~~AyA~iLT~pG~P~Vyyg~~~~~~~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~~~y~a~i~~~~~~k~g~~~-- 379 (401)
T PLN02361 302 HIMEGYAYILTHPGIPTVFYDHFYDWGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQSNLYSAIIDEKLCMKIGDGS-- 379 (401)
T ss_pred HHHHHHHHHHCCCCcCeEeeccccCCChHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCeEEEEECCeEEEEecCCC--
Confidence 889999999999999999999999995 9999999999999999999999999999999999999999999999863
Q ss_pred CccCCc--CeEEeeccCCCC
Q 045962 406 RNLIPR--NFKVATSGKDYA 423 (423)
Q Consensus 406 ~~~~~~--~~~~~~~g~~~~ 423 (423)
++|+ .|+.++||++||
T Consensus 380 --~~p~~~~~~~~~~g~~~~ 397 (401)
T PLN02361 380 --WCPSGREWTLATSGHRYA 397 (401)
T ss_pred --CCCCCCCceEEEecCceE
Confidence 4554 699999999997
No 3
>PLN02784 alpha-amylase
Probab=100.00 E-value=2.8e-67 Score=541.81 Aligned_cols=373 Identities=48% Similarity=0.900 Sum_probs=323.0
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
+++|+|+|.|++..+ +..+++|+++|+||++||||+|||+|++ ++ .+++||+|.|||+++
T Consensus 502 ~eVmlQgF~Wds~~d-g~w~~~I~ekldyL~~LG~taIWLpP~~----------~s--------~s~~GY~p~D~y~ld- 561 (894)
T PLN02784 502 FEILCQGFNWESHKS-GRWYMELGEKAAELSSLGFTVVWLPPPT----------ES--------VSPEGYMPKDLYNLN- 561 (894)
T ss_pred ceEEEEeEEcCcCCC-CchHHHHHHHHHHHHHhCCCEEEeCCCC----------CC--------CCCCCcCcccccccC-
Confidence 699999999998876 5679999999999999999999999999 66 578999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGE 182 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (423)
++|||.++|++||++||++||+||+|+|+||++..+++..+.|..|.+ ..+|.+...+.+...|. ++++..++.
T Consensus 562 s~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g-----~~dW~d~~i~~ddp~F~-GrG~~~sgd 635 (894)
T PLN02784 562 SRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-----RLNWDDRAVVADDPHFQ-GRGNKSSGD 635 (894)
T ss_pred cCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCC-----eecCCCCcccCCCcccC-CcCCcCccc
Confidence 999999999999999999999999999999999876554555554443 23565544443333443 556666777
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEEeecCCCcccCCCccchhh
Q 045962 183 PFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEKWDSLSYRQDGKLDARQ 262 (423)
Q Consensus 183 ~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~~gE~~~~~~~~~~~~~~y~~ 262 (423)
++..+||||++||+||+++.++++||++++||||||+|+|++++.+|+++++++.+|.|+|||.|.+..+. .++++|++
T Consensus 636 df~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~-~g~~~Ynq 714 (894)
T PLN02784 636 NFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYT-YGEMDYNQ 714 (894)
T ss_pred ccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccc-cCccccCc
Confidence 88999999999999999999999999988999999999999999999999999999999999999876554 46899999
Q ss_pred hHHHHHHHHHHHHhCCccccccchhhhHhhhC---------------CCCccCCCCCCceeccCCCCCCCCCCCCCCChh
Q 045962 263 DAHRRNLKYWVQAAGRAVTAFDFTTKGILQAA---------------PPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSA 327 (423)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~---------------~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~ 327 (423)
+.+++.+.+|++.+++..++|||+++..+.++ .+++.+.+|.++|+|++||||++....+..+..
T Consensus 715 d~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~~w~~p~~ 794 (894)
T PLN02784 715 DAHRQRIVDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEG 794 (894)
T ss_pred hhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcccCCCCcc
Confidence 99999999999999999999999998888765 234566789999999999999987776666666
Q ss_pred hHHHHHHHHHcCCCceEEecCCCCCchhHHHHHHHHHHHHhcCcccccceEEEeecCCEEEEEECCEEEEEECCCCCcCc
Q 045962 328 KVMLGYAYILTHPGTPSIFYDHLFDWDLKKEIGKLAAIRTKNGINTTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRN 407 (423)
Q Consensus 328 ~~~~a~a~~~~~pG~P~iy~G~~~~w~~~~~~~~L~~lR~~~~~l~~g~~~~~~~~~~~~~~~r~~~~lv~in~~~~~~~ 407 (423)
+..+|||++||+||+|+||||+.+ |.+.+.|++|+.+|++...-....++.+..+.++|+...+++++|.|++....+.
T Consensus 795 k~~~AYAyILthpG~PcVFy~h~y-~~~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~~k~~~kiG~~~~~p~ 873 (894)
T PLN02784 795 KEMQGYAYILTHPGTPAVFYDHIF-SHYHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIIDEKVAMKIGPGHYEPP 873 (894)
T ss_pred chhhHHHHHHcCCCcceEEehhhh-hhhHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeCCeeEEEECCcccCCC
Confidence 778899999999999999999988 5778889999999999887677889999999999999999999999998754433
Q ss_pred cCCcCeEEeeccCCCC
Q 045962 408 LIPRNFKVATSGKDYA 423 (423)
Q Consensus 408 ~~~~~~~~~~~g~~~~ 423 (423)
..+.+|+.+++|++||
T Consensus 874 ~~~~~~~~~~sG~~ya 889 (894)
T PLN02784 874 NGPQNWSVALEGQDYK 889 (894)
T ss_pred CCCCceEEEEecCCeE
Confidence 3344799999999997
No 4
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=1.2e-60 Score=487.84 Aligned_cols=344 Identities=26% Similarity=0.424 Sum_probs=250.6
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccC----
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLY---- 98 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~---- 98 (423)
.+||+|+|+|++.. +|.++++|+++||||++||||+|||+||+ ++ .++..+|||++.||+
T Consensus 3 ~~~~~q~f~w~~~~-~~~~~~~I~~kldyl~~LGvtaIwl~P~~----------~~-----~~~~~~hgY~~~D~~~~~~ 66 (479)
T PRK09441 3 NGTMMQYFEWYLPN-DGKLWNRLAERAPELAEAGITAVWLPPAY----------KG-----TSGGYDVGYGVYDLFDLGE 66 (479)
T ss_pred CceEEEEEEeccCC-CccHHHHHHHHHHHHHHcCCCEEEeCCCc----------cC-----CCCCCCCCCCeeccccccc
Confidence 47999999999773 35678899999999999999999999999 55 113467999999999
Q ss_pred -----CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCC---------c------c------cceeccCC-
Q 045962 99 -----DLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDR---------R------G------IWCIFEGG- 151 (423)
Q Consensus 99 -----~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~---------~------~------~~~~f~~~- 151 (423)
.|| |+|||+++|++||++||++||+||+|+|+|||+..+..+ . . .|..|...
T Consensus 67 ~~~~~~id-~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (479)
T PRK09441 67 FDQKGTVR-TKYGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPG 145 (479)
T ss_pred ccccCCcC-cCcCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCC
Confidence 799 999999999999999999999999999999999643210 0 0 01011000
Q ss_pred C--CCCC--CCCCCCccccCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 045962 152 T--PDKR--LDWGPSFICRDD-----------------TTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKT 210 (423)
Q Consensus 152 ~--~~~~--~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~ 210 (423)
. ++.. ..|.. .+... ..|.+.......++.+..+||||++||+|+++|++++++|++
T Consensus 146 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~ 223 (479)
T PRK09441 146 RGGKYSDFKWHWYH--FSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYME 223 (479)
T ss_pred CCCcCCcceeCCcC--CCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHH
Confidence 0 0000 01110 00000 001000000111223456999999999999999999999998
Q ss_pred hcCCCeEEecccCCCCHHHHHHHHHhc---C--CCeEEEeecCCCcccCCCccchhhhHHHHHHHHHHHHhCCccccccc
Q 045962 211 EIGFDGWRFDFVKGYAPSITRLYMKNT---M--PHFTVAEKWDSLSYRQDGKLDARQDAHRRNLKYWVQAAGRAVTAFDF 285 (423)
Q Consensus 211 ~~gvDGfR~D~a~~~~~~~~~~~~~~~---~--p~~~~gE~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~df 285 (423)
++||||||+|+|++++.+||+++.+++ . +++++||+|... .+.+..|+...+...+.+||
T Consensus 224 ~~giDGfRlDavk~v~~~f~~~~~~~~~~~~~~~~~~vGE~~~~~---------------~~~~~~y~~~~~~~~~~~Df 288 (479)
T PRK09441 224 TTGFDGFRLDAVKHIDAWFIKEWIEHVREVAGKDLFIVGEYWSHD---------------VDKLQDYLEQVEGKTDLFDV 288 (479)
T ss_pred hcCCCEEEEhhhcCCCHHHHHHHHHHHHHhcCCCeEEEEeecCCC---------------hHHHHHHHHhcCCCceEecH
Confidence 899999999999999999999996653 2 388999999642 22344555544334456777
Q ss_pred hhhhHhhhCC-------------CCccCCCCCCceeccCCCCCCCCCCCCCCChh-hHHHHHHHHHcCC-CceEEecCCC
Q 045962 286 TTKGILQAAP-------------PGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSA-KVMLGYAYILTHP-GTPSIFYDHL 350 (423)
Q Consensus 286 ~~~~~l~~~~-------------~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~-~~~~a~a~~~~~p-G~P~iy~G~~ 350 (423)
++...+.++. .......|..+++|++|||++|+.+....... ..++|++++||+| |+|+||||+|
T Consensus 289 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE 368 (479)
T PRK09441 289 PLHYNFHEASKQGRDYDMRNIFDGTLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDY 368 (479)
T ss_pred HHHHHHHHHHhcCCccchHhhhCcchhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccc
Confidence 7665554331 01112345667899999999998776542222 3579999999999 9999999999
Q ss_pred CCch-------hHHHHHHHHHHHHhcCcccccceEEEeecCCEEEEEEC-----CEEEEEECCCC
Q 045962 351 FDWD-------LKKEIGKLAAIRTKNGINTTSRVNILASQSDLYVAAID-----DKIITKIGPKM 403 (423)
Q Consensus 351 ~~w~-------~~~~~~~L~~lR~~~~~l~~g~~~~~~~~~~~~~~~r~-----~~~lv~in~~~ 403 (423)
+++. ++++|++|+++|++++ .|.+..+..++++++|.|. +.+||++||+.
T Consensus 369 ~g~~g~~~~~~l~~~i~~Li~lRk~~~---~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~~ 430 (479)
T PRK09441 369 YGASGYYIDMPFKEKLDKLLLARKNFA---YGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNGD 430 (479)
T ss_pred cCCCCCcccchHHHHHHHHHHHHHHhC---CCCeeEeecCCCEEEEEEecCCCCccEEEEEECCC
Confidence 9874 8999999999999964 6888888889999999992 35888888754
No 5
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=2.4e-59 Score=487.78 Aligned_cols=336 Identities=21% Similarity=0.351 Sum_probs=248.6
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
||||+||+++|||||+||||+|||+||+ ++ .++|||++.||+.|| |+|||+++|++||++|
T Consensus 175 GGDl~GI~~kLdYL~~LGv~~I~L~Pif----------~s--------~s~hgYd~~Dy~~iD-p~~Gt~~df~~Lv~~a 235 (598)
T PRK10785 175 GGDLDGISEKLPYLKKLGVTALYLNPIF----------TA--------PSVHKYDTEDYRHVD-PQLGGDAALLRLRHAT 235 (598)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCcc----------cC--------CCCCCcCcccccccC-cccCCHHHHHHHHHHH
Confidence 8999999999999999999999999999 77 689999999999999 9999999999999999
Q ss_pred HHcCCEEEEEEecccCCCCCCCCcccceeccC-C------CC-CCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 045962 119 NKKGIKCLADIVINHRTAEKKDRRGIWCIFEG-G------TP-DKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDI 190 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~-~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 190 (423)
|++||+||||+|+||+|.+|+ |+.-.. + .+ .++.+|... . ..+.+..+.....+|+|
T Consensus 236 H~rGikVilD~V~NH~~~~~~-----~f~~~~~~~~ga~~~~~spy~dwf~~---------~-~~~~~~~w~g~~~lPdL 300 (598)
T PRK10785 236 QQRGMRLVLDGVFNHTGDSHP-----WFDRHNRGTGGACHHPDSPWRDWYSF---------S-DDGRALDWLGYASLPKL 300 (598)
T ss_pred HHCCCEEEEEECCCcCCCCCH-----HHHHhhccccccccCCCCCcceeeEE---------C-CCCCcCCcCCCCcCccc
Confidence 999999999999999998874 221000 0 01 112233211 1 11223334456789999
Q ss_pred CCCCHHHHHHHHH----HHHHHHHh-cCCCeEEecccCCCC--------HHHHHHH---HHhcCC-CeEEEeecCCCc-c
Q 045962 191 DHLNPRVQKELSD----WMNWLKTE-IGFDGWRFDFVKGYA--------PSITRLY---MKNTMP-HFTVAEKWDSLS-Y 252 (423)
Q Consensus 191 n~~~p~v~~~~~~----~l~~w~~~-~gvDGfR~D~a~~~~--------~~~~~~~---~~~~~p-~~~~gE~~~~~~-~ 252 (423)
|++||+|+++|++ ++++|+++ +||||||+|+|+.++ .+||+++ +++.+| .+++||+|.+.. +
T Consensus 301 N~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~ 380 (598)
T PRK10785 301 DFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQW 380 (598)
T ss_pred cCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhh
Confidence 9999999999995 79999986 899999999999884 4799988 455667 889999997532 2
Q ss_pred cC----CCccchhhhHHHHHHHHHHHHhCCcc--ccccc-hhhhHhhhCCCCccCCCCCCceeccCCCCCCCCCCCCCCC
Q 045962 253 RQ----DGKLDARQDAHRRNLKYWVQAAGRAV--TAFDF-TTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFP 325 (423)
Q Consensus 253 ~~----~~~~~y~~~~~~~~~~~~~~~~~~~~--~~~df-~~~~~l~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~ 325 (423)
.. ++.++|. .+...+..++....... ...+. .+...+......+........++|++|||++|+.+.....
T Consensus 381 l~~~~~d~~mny~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~R~~~~~~~~ 458 (598)
T PRK10785 381 LQADVEDAAMNYR--GFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTARFKTLLGGD 458 (598)
T ss_pred ccCccccccccch--hhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccchhhhhhCCC
Confidence 21 3455552 24445555554221000 00110 0111111110100000001246899999999988876656
Q ss_pred hhhHHHHHHHHHcCCCceEEecCCCC--------------Cc-------hhHHHHHHHHHHHHhcCcccccceEEEeecC
Q 045962 326 SAKVMLGYAYILTHPGTPSIFYDHLF--------------DW-------DLKKEIGKLAAIRTKNGINTTSRVNILASQS 384 (423)
Q Consensus 326 ~~~~~~a~a~~~~~pG~P~iy~G~~~--------------~w-------~~~~~~~~L~~lR~~~~~l~~g~~~~~~~~~ 384 (423)
..++++|++++||+||+|+||||+|. .| ++++++|+|++||+++|+|+.|.++.+..++
T Consensus 459 ~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~ 538 (598)
T PRK10785 459 KARMPLALVWLFTWPGVPCIYYGDEVGLDGGNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGGCQVLYAEG 538 (598)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeeeeccccCCCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCcEEEEEeCC
Confidence 67899999999999999999999863 46 3899999999999999999999999998889
Q ss_pred CEEEEEE---CCEEEEEECCCCCcCccCC
Q 045962 385 DLYVAAI---DDKIITKIGPKMDLRNLIP 410 (423)
Q Consensus 385 ~~~~~~r---~~~~lv~in~~~~~~~~~~ 410 (423)
++++|.| +++++|++|++......+|
T Consensus 539 ~v~af~R~~~~~~vlVviN~s~~~~v~lp 567 (598)
T PRK10785 539 NVVVFARVLQQQRVLVAINRGEACEVVLP 567 (598)
T ss_pred CEEEEEEECCCCEEEEEEECCCCeEEecc
Confidence 9999999 6899999998854444444
No 6
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=5.7e-58 Score=473.79 Aligned_cols=362 Identities=17% Similarity=0.243 Sum_probs=255.6
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
++|++.+|. |++++++|||+||+++|||||+||||+|||+||+ ++ +..+|||++.||+.||
T Consensus 9 Yqi~~~~f~-d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~----------~~-------~~~~~gY~~~dy~~vd- 69 (539)
T TIGR02456 9 YEVHVRSFF-DSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFF----------QS-------PLRDDGYDVSDYRAIL- 69 (539)
T ss_pred EEEehhHhh-cCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCc----------CC-------CCCCCCCCcccccccC-
Confidence 688888998 8888889999999999999999999999999999 66 2357999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCC----------CCcccceeccCCCCCCCCCCCCCccccC--CCC
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKK----------DRRGIWCIFEGGTPDKRLDWGPSFICRD--DTT 170 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~----------~~~~~~~~f~~~~~~~~~~~~~~~~~~~--~~~ 170 (423)
|+|||+++|++||++||++||+||+|+|+||++.+|+ .+...|+.+.+... .+.+....+.... .+.
T Consensus 70 ~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~ 148 (539)
T TIGR02456 70 PEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDE-KYKDTRIIFVDTEKSNWT 148 (539)
T ss_pred hhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCc-ccccccccccccCCCCcc
Confidence 9999999999999999999999999999999999873 22334555443111 0111000000000 111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC-------------CHHHHHHHHH--
Q 045962 171 YSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-------------APSITRLYMK-- 235 (423)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~-------------~~~~~~~~~~-- 235 (423)
+......+....+...+||||++||+||++|++++++|++ +||||||||+++++ ..+||+++.+
T Consensus 149 ~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v 227 (539)
T TIGR02456 149 FDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMV 227 (539)
T ss_pred ccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHH
Confidence 1122223333446689999999999999999999999997 99999999999987 2478888844
Q ss_pred -hcCC-CeEEEeecCCCcccCCCccchhhhHHHHHHHHHHHH-hC-CccccccchhhhHhhhC------------CCCcc
Q 045962 236 -NTMP-HFTVAEKWDSLSYRQDGKLDARQDAHRRNLKYWVQA-AG-RAVTAFDFTTKGILQAA------------PPGFI 299 (423)
Q Consensus 236 -~~~p-~~~~gE~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~-~~~~~~df~~~~~l~~~------------~~~~~ 299 (423)
+..| .+++||++.. ...+..|+.. .. .....|+|++...+... .....
T Consensus 228 ~~~~p~~~~iaE~~~~----------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~ 291 (539)
T TIGR02456 228 DREYPGRMLLAEANQW----------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETP 291 (539)
T ss_pred HHhCCCeEEEEEeCCC----------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhh
Confidence 4456 8899998532 1122233221 11 23445555543222111 00000
Q ss_pred -CCCCCCceeccCCCCCCC-------------------------------CCCCCCCChhhHHHHHHHHHcCCCceEEec
Q 045962 300 -GLLPQNAVTFIDNHDTGS-------------------------------TQRLWPFPSAKVMLGYAYILTHPGTPSIFY 347 (423)
Q Consensus 300 -~~~~~~~~~f~~nHD~~r-------------------------------~~~~~~~~~~~~~~a~a~~~~~pG~P~iy~ 347 (423)
...+...++|++|||+.| ..+......+++++|++++||+||+|+|||
T Consensus 292 ~~~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYY 371 (539)
T TIGR02456 292 DIPDSCQWCIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYY 371 (539)
T ss_pred hccCCCceeeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEe
Confidence 011223467999999954 222222234578999999999999999999
Q ss_pred CCCC------------------Cch-----------------------------------------hHHHHHHHHHHHHh
Q 045962 348 DHLF------------------DWD-----------------------------------------LKKEIGKLAAIRTK 368 (423)
Q Consensus 348 G~~~------------------~w~-----------------------------------------~~~~~~~L~~lR~~ 368 (423)
|+|. .|+ ++++||+|++||++
T Consensus 372 G~EiGm~~~~~~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~ 451 (539)
T TIGR02456 372 GDEIGMGDNIWLGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKA 451 (539)
T ss_pred chhhcCcCCCccCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhc
Confidence 9864 341 58899999999999
Q ss_pred cCcccccceEEEeec-CCEEEEEE---CCEEEEEECCCCC-cCccCCc------CeEEeeccCC
Q 045962 369 NGINTTSRVNILASQ-SDLYVAAI---DDKIITKIGPKMD-LRNLIPR------NFKVATSGKD 421 (423)
Q Consensus 369 ~~~l~~g~~~~~~~~-~~~~~~~r---~~~~lv~in~~~~-~~~~~~~------~~~~~~~g~~ 421 (423)
+|+|..|+++.+..+ +++++|.| +++++|++|.+.. +...++. .+.++++++.
T Consensus 452 ~~aL~~G~~~~l~~~~~~v~~f~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~dl~~~~~ 515 (539)
T TIGR02456 452 HPAFGRGSLTFLPTGNRRVLAFLREYEGERVLCVFNFSRNPQAVELDLSEFAGRVPVELIGGAP 515 (539)
T ss_pred CcccccCceEEEecCCCCEEEEEEEcCCcEEEEEEeCCCCCEEeeccccccccCcceecccCCc
Confidence 999999999988764 57999998 6789999997632 2222221 4566776654
No 7
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=3.7e-57 Score=466.91 Aligned_cols=372 Identities=19% Similarity=0.253 Sum_probs=259.7
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
+++.+++|. |+++++.|||+|++++|+|||+|||++|||+||+ ++ +...+||++.||+.||
T Consensus 8 Y~i~~~~f~-~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~----------~~-------~~~~~gY~~~d~~~id- 68 (543)
T TIGR02403 8 YQIYPKSFY-DSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFY----------VS-------PQKDNGYDVSDYYAIN- 68 (543)
T ss_pred EEEEhHHHh-cCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcc----------cC-------CCCCCCCCccccCccC-
Confidence 566777887 8888889999999999999999999999999999 65 2456799999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCC---------CCcccceeccCCCCCCCCCCCCCccccCCCCCCC
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKK---------DRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSD 173 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~---------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (423)
|+|||+++|++||++||++||+||+|+|+||++.+|+ ++...|+.|.+.....+.+|...+ ....+.+..
T Consensus 69 ~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~-~~~~w~~~~ 147 (543)
T TIGR02403 69 PLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKF-GGSAWEYFG 147 (543)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccC-CCcCccccC
Confidence 9999999999999999999999999999999998884 222345555542222233443322 111222333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-----------------------HHHH
Q 045962 174 GRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-----------------------PSIT 230 (423)
Q Consensus 174 ~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~-----------------------~~~~ 230 (423)
...++....+...+||||++||+|+++|.+++++|++ .||||||||+|++++ .+||
T Consensus 148 ~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 226 (543)
T TIGR02403 148 DTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYL 226 (543)
T ss_pred CCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHH
Confidence 3445555566788999999999999999999999997 899999999999986 2578
Q ss_pred HHHHHhc--CC-CeEEEeecCCCc-----ccC----CCccchhhhHHHHHHHHHHHHhCCccccccc-hhhhHhhhCCCC
Q 045962 231 RLYMKNT--MP-HFTVAEKWDSLS-----YRQ----DGKLDARQDAHRRNLKYWVQAAGRAVTAFDF-TTKGILQAAPPG 297 (423)
Q Consensus 231 ~~~~~~~--~p-~~~~gE~~~~~~-----~~~----~~~~~y~~~~~~~~~~~~~~~~~~~~~~~df-~~~~~l~~~~~~ 297 (423)
+++.+.+ +| .++|||+|.... |.. ..++.++. ......+..........++. .+...+......
T Consensus 227 ~~~~~~~~~~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~nf---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (543)
T TIGR02403 227 QEMNQEVFGDNDSVTVGEMSSTTIENCIRYSNPENKELSMVFTF---HHLKVDYPNGEKWTLAKFDFAKLKEIFSTWQTG 303 (543)
T ss_pred HHHHHHhhccCCeEEEEEeCCCCHHHHHhhhCCCCCeeCeEECh---hhhhchhccccccccCCCCHHHHHHHHHHHHHh
Confidence 8874433 44 899999996421 111 11222221 11111121110000001111 111111111111
Q ss_pred ccCCCCCCceeccCCCCCCCCCCCCCCCh----hhHHHHHHHHHcCCCceEEecCCCC----------------------
Q 045962 298 FIGLLPQNAVTFIDNHDTGSTQRLWPFPS----AKVMLGYAYILTHPGTPSIFYDHLF---------------------- 351 (423)
Q Consensus 298 ~~~~~~~~~~~f~~nHD~~r~~~~~~~~~----~~~~~a~a~~~~~pG~P~iy~G~~~---------------------- 351 (423)
... .....++|++|||++|..+...... +..+++.++++|+||+|+||||+|.
T Consensus 304 ~~~-~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~ 382 (543)
T TIGR02403 304 MQA-GGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAY 382 (543)
T ss_pred ccc-cCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHH
Confidence 110 1123457999999999877665322 2467888899999999999999752
Q ss_pred -----------------------------Cc----------------------------------hhHHHHHHHHHHHHh
Q 045962 352 -----------------------------DW----------------------------------DLKKEIGKLAAIRTK 368 (423)
Q Consensus 352 -----------------------------~w----------------------------------~~~~~~~~L~~lR~~ 368 (423)
.| ++++++|+||+||++
T Consensus 383 ~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~ 462 (543)
T TIGR02403 383 DILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKS 462 (543)
T ss_pred HHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhh
Confidence 23 177999999999999
Q ss_pred cCcccccceEEEeecC-CEEEEEE---CCEEEEEECCCCC-cCccCCc---CeEEeecc
Q 045962 369 NGINTTSRVNILASQS-DLYVAAI---DDKIITKIGPKMD-LRNLIPR---NFKVATSG 419 (423)
Q Consensus 369 ~~~l~~g~~~~~~~~~-~~~~~~r---~~~~lv~in~~~~-~~~~~~~---~~~~~~~g 419 (423)
+|+|..|+++.+..++ ++++|.| +++++|++|.+.. +...+|. .+..++++
T Consensus 463 ~~aL~~G~~~~~~~~~~~v~a~~R~~~~~~~lVv~N~s~~~~~~~l~~~~~~~~~~~~~ 521 (543)
T TIGR02403 463 EPVITDGDYQFLLPDDPSVWAYTRTYKNQKLLVINNFYGEEKTIELPLDLLSGKILLSN 521 (543)
T ss_pred cccccCccEEEeecCCCcEEEEEEEcCCcEEEEEEECCCCCeEeeCCccCcCceEEEec
Confidence 9999999999987664 7999999 6789999997643 2234453 45666655
No 8
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.1e-56 Score=467.04 Aligned_cols=337 Identities=20% Similarity=0.312 Sum_probs=227.5
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
||||+||+++|+|||+||||+|||+||++......+ .+ ........++|||++.||+.|| |+|||+++|++||++|
T Consensus 226 GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~--~g-~~g~~~~~~yhgY~~~D~~~id-~~~Gt~~dfk~Lv~~a 301 (683)
T PRK09505 226 GGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVG--GG-TKGDFPHYAYHGYYTLDWTKLD-ANMGTEADLRTLVDEA 301 (683)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCccccccccccc--cc-cccCCCcCCCCCCCccccccCC-CCCCCHHHHHHHHHHH
Confidence 799999999999999999999999999943110000 00 0000112588999999999999 9999999999999999
Q ss_pred HHcCCEEEEEEecccCCCCCC-CC-------------------cccceeccCCCCCCCCCCCCC---ccccCCCCCCC--
Q 045962 119 NKKGIKCLADIVINHRTAEKK-DR-------------------RGIWCIFEGGTPDKRLDWGPS---FICRDDTTYSD-- 173 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~-~~-------------------~~~~~~f~~~~~~~~~~~~~~---~~~~~~~~~~~-- 173 (423)
|++||+||+|+|+||++..+. +. ...|..|.. ....+|+.. +...+...|.+
T Consensus 302 H~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~---~~~~~~~~~~~~~~~~~~~~~~~ww 378 (683)
T PRK09505 302 HQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQP---AAGQNWHSFNDYINFSDSTAWDKWW 378 (683)
T ss_pred HHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccc---cccccccccccccccCCcccccccc
Confidence 999999999999999995431 10 011111111 001112110 00000001110
Q ss_pred -------CCCC------CCCCCCCCCCCCCCCC-----------------------CHHHHHHHHHHHHHHHHhcCCCeE
Q 045962 174 -------GRGH------PDSGEPFGPAPDIDHL-----------------------NPRVQKELSDWMNWLKTEIGFDGW 217 (423)
Q Consensus 174 -------~~~~------~~~~~~~~~~~dln~~-----------------------~p~v~~~~~~~l~~w~~~~gvDGf 217 (423)
+... ....+....|||||++ ||+|+++|++++++|++++|||||
T Consensus 379 g~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGf 458 (683)
T PRK09505 379 GKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGF 458 (683)
T ss_pred ccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 0000 0111233567888776 459999999999999998999999
Q ss_pred EecccCCCCHHHHHHHHHhc----------C--------CCeEEEeecCCCcccCCCccchhhhHHHHHHHHHHHHhCCc
Q 045962 218 RFDFVKGYAPSITRLYMKNT----------M--------PHFTVAEKWDSLSYRQDGKLDARQDAHRRNLKYWVQAAGRA 279 (423)
Q Consensus 218 R~D~a~~~~~~~~~~~~~~~----------~--------p~~~~gE~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 279 (423)
|+|+|+||+.+||+++..++ + +++++||+|+..... ..|.. .+.
T Consensus 459 RlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~----------------~~y~~--~~f 520 (683)
T PRK09505 459 RVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMK----------------SDYYR--HGF 520 (683)
T ss_pred EEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecCCchhh----------------HHHHh--hcC
Confidence 99999999999999984322 1 378999999643210 01111 112
Q ss_pred cccccchhhhHhhhC----------CCCcc-CCCCCCceeccCCCCCCCCCCCCCCChhhHHHHHHHHHcCCCceEEecC
Q 045962 280 VTAFDFTTKGILQAA----------PPGFI-GLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFYD 348 (423)
Q Consensus 280 ~~~~df~~~~~l~~~----------~~~~~-~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~~~~pG~P~iy~G 348 (423)
.+.++|+++..+.+. ..... .....+.++|++|||++|+.+.... ..+.++|++++||+||+|+||||
T Consensus 521 Dsv~NF~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~FLdNHDt~Rf~s~~~~-~~~~klAaall~tlpGiP~IYYG 599 (683)
T PRK09505 521 DAMINFDYQEQAAKAVDCLAQMDPTYQQMAEKLQDFNVLSYLSSHDTRLFFEGGQS-YAKQRRAAELLLLAPGAVQIYYG 599 (683)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeecccCCChhhhhhhcCc-hHHHHHHHHHHHhCCCCcEEEec
Confidence 233333322211100 00000 0012345789999999998776553 36789999999999999999999
Q ss_pred CCC-------------------Cc--------hhHHHHHHHHHHHHhcCcccccceEEEeecCCEEEEEE---CCEEEEE
Q 045962 349 HLF-------------------DW--------DLKKEIGKLAAIRTKNGINTTSRVNILASQSDLYVAAI---DDKIITK 398 (423)
Q Consensus 349 ~~~-------------------~w--------~~~~~~~~L~~lR~~~~~l~~g~~~~~~~~~~~~~~~r---~~~~lv~ 398 (423)
+|. .| ++++++|+|++||+++|+|+.|+++.+. ++++++|.| +++++|+
T Consensus 600 dEiGm~gg~~g~DP~~~~R~~M~W~~~~~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l~-~~~~~aF~R~~~~d~vlVv 678 (683)
T PRK09505 600 DESARPFGPTGSDPLQGTRSDMNWQEVSGKSAALLAHWQKLGQFRARHPAIGAGKQTTLS-LKQYYAFVREHGDDKVMVV 678 (683)
T ss_pred hhhCccCCCCCCCCcccccccCCccccccchHHHHHHHHHHHHHHhhCHHhhCCceEEec-cCCEEEEEEEeCCCEEEEE
Confidence 863 46 2899999999999999999999998874 568999999 6789999
Q ss_pred ECCC
Q 045962 399 IGPK 402 (423)
Q Consensus 399 in~~ 402 (423)
+|..
T Consensus 679 ~~~~ 682 (683)
T PRK09505 679 WAGQ 682 (683)
T ss_pred EeCC
Confidence 8853
No 9
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=2.1e-56 Score=460.66 Aligned_cols=372 Identities=16% Similarity=0.226 Sum_probs=259.7
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
+++++++|. |++++++|||+|++++||||++|||++|||+||+ ++ +..+|||++.||+.||
T Consensus 14 Yqi~~~~f~-d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~----------~~-------~~~~~gY~~~d~~~id- 74 (551)
T PRK10933 14 YQIYPKSFQ-DTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFY----------VS-------PQVDNGYDVANYTAID- 74 (551)
T ss_pred EEEEchHhh-cCCCCCCcCHHHHHHhhHHHHhCCCCEEEECCCC----------CC-------CCCCCCCCcccCCCcC-
Confidence 455566777 8888889999999999999999999999999999 55 3457999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCC---------CCcccceeccCCCCC-CCCCCCCCccccCCCCCC
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKK---------DRRGIWCIFEGGTPD-KRLDWGPSFICRDDTTYS 172 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~---------~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~ 172 (423)
|+|||.++|++||++||++||+||+|+|+||++.+|+ ++...|+.|.++.+. .+..|...+ +...+.|.
T Consensus 75 ~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~-~~~~w~~~ 153 (551)
T PRK10933 75 PTYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKF-GGSAWRWH 153 (551)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccC-CCcccccc
Confidence 9999999999999999999999999999999999874 233456666543221 123443322 22233444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH-----------------------HH
Q 045962 173 DGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------------------SI 229 (423)
Q Consensus 173 ~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~-----------------------~~ 229 (423)
.....+....+...+||||++||+|+++|++++++|++ +||||||+|+|+++++ +|
T Consensus 154 ~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (551)
T PRK10933 154 AESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEF 232 (551)
T ss_pred CCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHH
Confidence 44455555566688999999999999999999999996 9999999999999874 46
Q ss_pred HHHHHHhc-C--CCeEEEeecCCCc-----cc--CC--CccchhhhHHHHHHHHHHHHhCCccccccc-hhhhHhhhCCC
Q 045962 230 TRLYMKNT-M--PHFTVAEKWDSLS-----YR--QD--GKLDARQDAHRRNLKYWVQAAGRAVTAFDF-TTKGILQAAPP 296 (423)
Q Consensus 230 ~~~~~~~~-~--p~~~~gE~~~~~~-----~~--~~--~~~~y~~~~~~~~~~~~~~~~~~~~~~~df-~~~~~l~~~~~ 296 (423)
++++.+.. + ..+++||+|.... +. .+ .++.++. ......+..+........++ .+...+.....
T Consensus 233 l~~~~~~~~~~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~fnf---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (551)
T PRK10933 233 LQEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNF---HHLKVDYPNGEKWTLAKPDFVALKTLFRHWQQ 309 (551)
T ss_pred HHHHHHHhhcccCcEEEEeecCCCHHHHHHhhcccCCeeeeEecH---HHhhhhhccCCcccccccCHHHHHHHHHHHHH
Confidence 66664432 2 2679999986321 11 11 1223331 11111221110000011111 11112211111
Q ss_pred CccCCCCCCceeccCCCCCCCCCCCCCCCh----hhHHHHHHHHHcCCCceEEecCCCC---------------------
Q 045962 297 GFIGLLPQNAVTFIDNHDTGSTQRLWPFPS----AKVMLGYAYILTHPGTPSIFYDHLF--------------------- 351 (423)
Q Consensus 297 ~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~----~~~~~a~a~~~~~pG~P~iy~G~~~--------------------- 351 (423)
... .......|++|||++|..+..+... ..++++.+++||+||+|+||||+|.
T Consensus 310 ~~~--~~~~~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~ 387 (551)
T PRK10933 310 GMH--NVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNM 387 (551)
T ss_pred hhc--ccCeeccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHH
Confidence 110 0123457999999999887765332 2356778889999999999999853
Q ss_pred ------------------------------Cc----------------------------------hhHHHHHHHHHHHH
Q 045962 352 ------------------------------DW----------------------------------DLKKEIGKLAAIRT 367 (423)
Q Consensus 352 ------------------------------~w----------------------------------~~~~~~~~L~~lR~ 367 (423)
.| +++.++|+||+||+
T Consensus 388 ~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk 467 (551)
T PRK10933 388 FAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRK 467 (551)
T ss_pred HHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhh
Confidence 23 16789999999999
Q ss_pred hcCcccccceEEEee-cCCEEEEEE---CCEEEEEECCCCC-cCccCC---cCeEEeeccC
Q 045962 368 KNGINTTSRVNILAS-QSDLYVAAI---DDKIITKIGPKMD-LRNLIP---RNFKVATSGK 420 (423)
Q Consensus 368 ~~~~l~~g~~~~~~~-~~~~~~~~r---~~~~lv~in~~~~-~~~~~~---~~~~~~~~g~ 420 (423)
++|+|..|+++.+.. ++.+++|.| +++++|++|.+.. +...+| +.|+++++++
T Consensus 468 ~~~aL~~G~~~~~~~~~~~v~af~R~~~~~~~lvv~N~s~~~~~~~~~~~~~~~~~~l~~~ 528 (551)
T PRK10933 468 QEPVLTWGDYQDLLPNHPSLWCYRREWQGQTLLVIANLSREPQPWQPGQMRGNWQLLMHNY 528 (551)
T ss_pred cChhhccceeEEeccCCCcEEEEEEEcCCcEEEEEEECCCCCeeeecCcccCCceEEeecC
Confidence 999999999998764 467999999 6789999997643 223233 2677777764
No 10
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=6.2e-51 Score=428.46 Aligned_cols=350 Identities=17% Similarity=0.218 Sum_probs=240.0
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhh-hHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRI-PDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH 101 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L-~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id 101 (423)
+|+++.+|. +...++.|||++++++| ||||+||||+||||||+++ +. ..+|||++.||++|+
T Consensus 151 Ye~hv~~f~-~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~--------~~--------~~~~GY~~~~y~~i~ 213 (633)
T PRK12313 151 YEVHLGSWK-RNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEH--------PL--------DGSWGYQLTGYFAPT 213 (633)
T ss_pred EEEehhccc-cCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcC--------CC--------CCCCCCCCcCcCcCC
Confidence 677888888 55444569999999995 9999999999999999943 22 468999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 045962 102 ASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSG 181 (423)
Q Consensus 102 ~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (423)
|+|||.++||+||++||++||+||||+|+||++.++.. ...|++... | .+.++......
T Consensus 214 -~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~~~~-----~----------~~~~~~~~~~~- 272 (633)
T PRK12313 214 -SRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDDG----LAYFDGTPL-----Y----------EYQDPRRAENP- 272 (633)
T ss_pred -CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc----ccccCCCcc-----e----------eecCCCCCcCC-
Confidence 99999999999999999999999999999999876421 111221100 0 00111000000
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC-----------------------CHHHHHHH---HH
Q 045962 182 EPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-----------------------APSITRLY---MK 235 (423)
Q Consensus 182 ~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~-----------------------~~~~~~~~---~~ 235 (423)
.+ +.++||++||+||++|++++++|++++||||||+|+++++ +.+||+++ ++
T Consensus 273 -~w-~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~ 350 (633)
T PRK12313 273 -DW-GALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVY 350 (633)
T ss_pred -CC-CCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHH
Confidence 11 2357999999999999999999999999999999988754 14788887 55
Q ss_pred hcCC-CeEEEeecCCCcc-cC---CC----ccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhCCCCccCCCCCCc
Q 045962 236 NTMP-HFTVAEKWDSLSY-RQ---DG----KLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNA 306 (423)
Q Consensus 236 ~~~p-~~~~gE~~~~~~~-~~---~~----~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~ 306 (423)
+.+| +++|||.+...+. .. ++ +..|+ ..+...+..|+...+... .++...... . ....... .
T Consensus 351 ~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~----~~~~~~e-~ 421 (633)
T PRK12313 351 LEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWN-MGWMNDTLRYFEEDPIYR-KYHHNLLTF--S----FMYAFSE-N 421 (633)
T ss_pred HHCCCeEEEEECCCCCccccccccCCCCCcCceeC-cHHHHHHHHHhhhCcccc-ccccccchH--H----Hhhhhhc-c
Confidence 6667 8899998754211 11 12 33344 234445555554322111 111100000 0 0000111 2
Q ss_pred eeccCCCCCC-----CCCCCCCCC----hhhHHHHHHHHHcCCCceEEecCCCCC------------c---------hhH
Q 045962 307 VTFIDNHDTG-----STQRLWPFP----SAKVMLGYAYILTHPGTPSIFYDHLFD------------W---------DLK 356 (423)
Q Consensus 307 ~~f~~nHD~~-----r~~~~~~~~----~~~~~~a~a~~~~~pG~P~iy~G~~~~------------w---------~~~ 356 (423)
..+++|||+. |........ .++++++++++||+||+||||||+|++ | ++.
T Consensus 422 ~~l~~sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~ 501 (633)
T PRK12313 422 FVLPFSHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQ 501 (633)
T ss_pred cccCCCCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHH
Confidence 3577899994 332222222 256889999999999999999998753 5 388
Q ss_pred HHHHHHHHHHHhcCccccc-----ceEEEeec---CCEEEEEEC-----CEEEEEECCCCC----cCccCC--cCeEEee
Q 045962 357 KEIGKLAAIRTKNGINTTS-----RVNILASQ---SDLYVAAID-----DKIITKIGPKMD----LRNLIP--RNFKVAT 417 (423)
Q Consensus 357 ~~~~~L~~lR~~~~~l~~g-----~~~~~~~~---~~~~~~~r~-----~~~lv~in~~~~----~~~~~~--~~~~~~~ 417 (423)
+++|+|++||+++|+|+.| .++++..+ +.+++|.|. +.++||+|.+.. ....+| +.|++++
T Consensus 502 ~~~r~Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~~~y~i~~p~~g~~~~il 581 (633)
T PRK12313 502 RFTSDLNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPVEREDYRIGVPVAGIYEEIL 581 (633)
T ss_pred HHHHHHHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCCcccceeECCCCCCeEEEEE
Confidence 8999999999999999754 46666553 469999993 568899996532 222344 5899999
Q ss_pred ccCC
Q 045962 418 SGKD 421 (423)
Q Consensus 418 ~g~~ 421 (423)
+++.
T Consensus 582 nsd~ 585 (633)
T PRK12313 582 NTDS 585 (633)
T ss_pred cCCc
Confidence 8764
No 11
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=6.1e-52 Score=433.57 Aligned_cols=365 Identities=22% Similarity=0.271 Sum_probs=242.3
Q ss_pred CceeeeeeecccCCC---CCCcHHHHHhh-----------hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCC
Q 045962 23 PTILFQGFNWESCNK---KGGWYNFLKKR-----------IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHAS 88 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~---~~G~~~~~~~~-----------L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~ 88 (423)
+|+++++|+- ..+. ..|+|.+++++ |+|||+||||+||||||+++..... .......
T Consensus 131 YElhv~~ft~-~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~--------~~~~~~~ 201 (605)
T TIGR02104 131 YELHIRDFSI-HENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDE--------EDPNNAY 201 (605)
T ss_pred EEEecchhcc-CCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCccccccccc--------ccCCCCC
Confidence 5778889983 3322 25888887765 9999999999999999996521110 0011134
Q ss_pred CCCCcccccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCC
Q 045962 89 LAGYMPGRLYDLHASSYGS--------QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWG 160 (423)
Q Consensus 89 ~~GY~~~d~~~id~~~~Gt--------~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~ 160 (423)
+|||++.||++++ ++||+ .+|||+||++||++||+||||+|+||++.... ..|++..+ .|.
T Consensus 202 ~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~------~~f~~~~~----~~~ 270 (605)
T TIGR02104 202 NWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREE------SPFEKTVP----GYY 270 (605)
T ss_pred CCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCC------CcccCCCC----Cee
Confidence 5999999999999 99987 59999999999999999999999999974321 01221111 110
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHH---Hhc
Q 045962 161 PSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYM---KNT 237 (423)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~~---~~~ 237 (423)
... +..+....+..+ ..++|+++|+||++|++++++|++++||||||+|++++++.++|+++. +..
T Consensus 271 ---~~~------~~~g~~~~~~g~--~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 271 ---YRY------NEDGTLSNGTGV--GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKI 339 (605)
T ss_pred ---EEE------CCCCCccCCCcc--cCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhh
Confidence 000 000011001111 236899999999999999999999999999999999999999999884 455
Q ss_pred CC-CeEEEeecCCCccc----C---------CCccchhhhHHHHHHHHHHHHhCCccccc---cchhhhHhhhC-CC---
Q 045962 238 MP-HFTVAEKWDSLSYR----Q---------DGKLDARQDAHRRNLKYWVQAAGRAVTAF---DFTTKGILQAA-PP--- 296 (423)
Q Consensus 238 ~p-~~~~gE~~~~~~~~----~---------~~~~~y~~~~~~~~~~~~~~~~~~~~~~~---df~~~~~l~~~-~~--- 296 (423)
+| .+++||.|...+.. . .+...++ +.++..+..+.-... ...| +......+... ..
T Consensus 340 ~p~~~ligE~w~~~~~~~~~~~~~~~~~~~~~~~~~~n-~~~rd~i~~~~~~~~--~~~f~~g~~~~~~~l~~~l~~~~~ 416 (605)
T TIGR02104 340 DPNILLYGEGWDLGTPLPPEQKATKANAYQMPGIAFFN-DEFRDALKGSVFHLK--KKGFVSGNPGTEETVKKGILGSIE 416 (605)
T ss_pred CCCeEEEEccCCCCCCcchhhhhhhhccCCCCceEEEC-CcchhhhcCCccccc--cCceecCCCCcHHHHHhheeCChh
Confidence 66 88999999754211 0 1122233 445555542210000 0000 00000111111 00
Q ss_pred ----CccCCCCCCceeccCCCCCCCCCCCCC----C-----ChhhHHHHHHHHHcCCCceEEecCCCC------------
Q 045962 297 ----GFIGLLPQNAVTFIDNHDTGSTQRLWP----F-----PSAKVMLGYAYILTHPGTPSIFYDHLF------------ 351 (423)
Q Consensus 297 ----~~~~~~~~~~~~f~~nHD~~r~~~~~~----~-----~~~~~~~a~a~~~~~pG~P~iy~G~~~------------ 351 (423)
......|...++|++|||+.|...+.. . ..++.++|++++||+||+||||||||+
T Consensus 417 ~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~ 496 (605)
T TIGR02104 417 LDAVKPSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYN 496 (605)
T ss_pred hcccccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCcc
Confidence 012235677899999999987532211 0 134789999999999999999999874
Q ss_pred --------Cc-------hhHHHHHHHHHHHHhcCcccccceE-------EEe-ecCCEEEEEEC--------CEEEEEEC
Q 045962 352 --------DW-------DLKKEIGKLAAIRTKNGINTTSRVN-------ILA-SQSDLYVAAID--------DKIITKIG 400 (423)
Q Consensus 352 --------~w-------~~~~~~~~L~~lR~~~~~l~~g~~~-------~~~-~~~~~~~~~r~--------~~~lv~in 400 (423)
+| ++++++|+|++||+++|+|+.|.+. .+. .++.+++|.|. ++++|++|
T Consensus 497 ~~d~~~~ldW~~~~~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv~N 576 (605)
T TIGR02104 497 SPDSINQLDWDRKATFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVIHN 576 (605)
T ss_pred CCCcccccCccccccchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEEEe
Confidence 35 2899999999999999999988643 222 24679999982 36899999
Q ss_pred CCC-CcCccCC--cCeEEeeccCC
Q 045962 401 PKM-DLRNLIP--RNFKVATSGKD 421 (423)
Q Consensus 401 ~~~-~~~~~~~--~~~~~~~~g~~ 421 (423)
.+. ++...+| +.|+.++.++.
T Consensus 577 ~s~~~~~v~lp~~~~w~~~~~~~~ 600 (605)
T TIGR02104 577 ANPEPVDIQLPSDGTWNVVVDNKN 600 (605)
T ss_pred CCCCCeEEECCCCCCEEEEECCCc
Confidence 653 3334455 48999987753
No 12
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=1.9e-49 Score=414.64 Aligned_cols=343 Identities=16% Similarity=0.197 Sum_probs=232.6
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhh-hHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRI-PDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH 101 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L-~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id 101 (423)
+++++.+|+ + .|+|++++++| ||||+||||+||||||+++ +. ..+|||+++|||+|+
T Consensus 142 Ye~hv~~~~-~-----~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~--------~~--------~~~wGY~~~~y~~~~ 199 (613)
T TIGR01515 142 YELHLGSWR-H-----GLSYRELADQLIPYVKELGFTHIELLPVAEH--------PF--------DGSWGYQVTGYYAPT 199 (613)
T ss_pred EEEehhhcc-C-----CCCHHHHHHHHHHHHHHcCCCEEEECCcccC--------CC--------CCCCCCCcccCcccc
Confidence 456666665 2 38999999997 9999999999999999943 22 468999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 045962 102 ASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSG 181 (423)
Q Consensus 102 ~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (423)
++|||.++|++||++||++||+||||+|+||++.++.. ...|.+. + .|. +.+..... .
T Consensus 200 -~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~-~----~y~----------~~~~~~~~--~ 257 (613)
T TIGR01515 200 -SRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHG----LAEFDGT-P----LYE----------HKDPRDGE--H 257 (613)
T ss_pred -cccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccch----hhccCCC-c----cee----------ccCCccCc--C
Confidence 99999999999999999999999999999999966421 1112110 0 000 00000000 0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC------------------------HHHHHHH---H
Q 045962 182 EPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA------------------------PSITRLY---M 234 (423)
Q Consensus 182 ~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~------------------------~~~~~~~---~ 234 (423)
..+ +.+++|+++|+||++|++++++|++++||||||+|+++++- .+||+++ +
T Consensus 258 ~~w-~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v 336 (613)
T TIGR01515 258 WDW-GTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTV 336 (613)
T ss_pred CCC-CCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHH
Confidence 111 35689999999999999999999999999999999986542 4788887 4
Q ss_pred HhcCC-CeEEEeecCCCcc-----cC---CCccchhhhHHHHHHHHHHHHhCCccccccch-hh-hHhhhCCCCccCCCC
Q 045962 235 KNTMP-HFTVAEKWDSLSY-----RQ---DGKLDARQDAHRRNLKYWVQAAGRAVTAFDFT-TK-GILQAAPPGFIGLLP 303 (423)
Q Consensus 235 ~~~~p-~~~~gE~~~~~~~-----~~---~~~~~y~~~~~~~~~~~~~~~~~~~~~~~df~-~~-~~l~~~~~~~~~~~~ 303 (423)
++.+| +++|||.+...+- .. +.+..|+ ..+...+..++..... ...++.. .. .+... ..
T Consensus 337 ~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~ 406 (613)
T TIGR01515 337 YEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWN-MGWMHDTLDYMSTDPV-ERQYHHQLITFSMLYA--------FS 406 (613)
T ss_pred HHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeC-chHHHHHHHHHhhChh-hHhhccccccHHHHHH--------hh
Confidence 55667 8899998744211 11 1233343 2334444445432111 0011000 00 00000 00
Q ss_pred CCceeccCCCCCC-----CCCCCCCCC----hhhHHHHHHHHHcCCCceEEecCCCC------------Cch--------
Q 045962 304 QNAVTFIDNHDTG-----STQRLWPFP----SAKVMLGYAYILTHPGTPSIFYDHLF------------DWD-------- 354 (423)
Q Consensus 304 ~~~~~f~~nHD~~-----r~~~~~~~~----~~~~~~a~a~~~~~pG~P~iy~G~~~------------~w~-------- 354 (423)
....+++|||+. |........ .+++++++++++|+||+||||||+|+ +|+
T Consensus 407 -e~~~~~~sHD~~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~ 485 (613)
T TIGR01515 407 -ENFVLPLSHDEVVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQ 485 (613)
T ss_pred -hccccCCCCCCcccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccH
Confidence 123467899994 322222211 25788999999999999999999864 452
Q ss_pred -hHHHHHHHHHHHHhcCcccccc-----eEEEee---cCCEEEEEEC-----CEEEEEECCCCC------cCccCCcCeE
Q 045962 355 -LKKEIGKLAAIRTKNGINTTSR-----VNILAS---QSDLYVAAID-----DKIITKIGPKMD------LRNLIPRNFK 414 (423)
Q Consensus 355 -~~~~~~~L~~lR~~~~~l~~g~-----~~~~~~---~~~~~~~~r~-----~~~lv~in~~~~------~~~~~~~~~~ 414 (423)
+.+++|+|++||+++|+|..|+ ++++.. ++.+++|.|. ++++|++|.+.. ++.+.++.|+
T Consensus 486 ~l~~~~k~L~~Lr~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~~~~~Y~i~~p~~g~~~ 565 (613)
T TIGR01515 486 GVSVFVRDLNRTYQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPVVRHQYRVGVPQPGQYR 565 (613)
T ss_pred HHHHHHHHHHHHHhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCCCccceEeCCCCCCeEE
Confidence 7889999999999999997654 445543 4579999983 369999996543 2223346899
Q ss_pred EeeccCC
Q 045962 415 VATSGKD 421 (423)
Q Consensus 415 ~~~~g~~ 421 (423)
.+++++.
T Consensus 566 ~il~Sd~ 572 (613)
T TIGR01515 566 EVLNSDS 572 (613)
T ss_pred EEEeCCh
Confidence 9998764
No 13
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.7e-49 Score=416.46 Aligned_cols=369 Identities=20% Similarity=0.301 Sum_probs=250.7
Q ss_pred CceeeeeeecccCC----CCCCcHHHHHhh--hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccc
Q 045962 23 PTILFQGFNWESCN----KKGGWYNFLKKR--IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGR 96 (423)
Q Consensus 23 ~~v~~~~F~~d~~~----~~~G~~~~~~~~--L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d 96 (423)
+++++++|+ +... +..|||+|++++ |||||+||||+||||||+++..+.... ......+|||+|.|
T Consensus 159 YE~hvr~Ft-~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~-------~~~~~~ywGYd~~~ 230 (688)
T TIGR02100 159 YEAHVKGFT-QLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLL-------EKGLRNYWGYNTLG 230 (688)
T ss_pred EEEEhHHhc-CCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCcccccc-------ccCCCCccCcCccc
Confidence 567778887 4222 347999999985 999999999999999999653221100 01114679999999
Q ss_pred cCCCCCCCC---CCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCC
Q 045962 97 LYDLHASSY---GSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSD 173 (423)
Q Consensus 97 ~~~id~~~~---Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (423)
||+|| ++| |+.+|||+||++||++||+||||+|+||++..+.. +....+++-.. ..|..... .....|.
T Consensus 231 y~a~d-~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~--~~~~~~~~~d~---~~yy~~~~-~~~~~~~- 302 (688)
T TIGR02100 231 FFAPE-PRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNEL--GPTLSFRGIDN---ASYYRLQP-DDKRYYI- 302 (688)
T ss_pred ccccC-hhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCC--CCcccccCCCC---CcceEecC-CCCceec-
Confidence 99999 999 67999999999999999999999999999976521 11112222000 01110000 0000011
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH---------HHHHHHHHh-cCC-CeE
Q 045962 174 GRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP---------SITRLYMKN-TMP-HFT 242 (423)
Q Consensus 174 ~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~---------~~~~~~~~~-~~p-~~~ 242 (423)
......+++|+++|+||++|++++++|++++||||||+|++..+.. ++++++.+. +.| +++
T Consensus 303 --------~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~l 374 (688)
T TIGR02100 303 --------NDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKL 374 (688)
T ss_pred --------CCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEE
Confidence 1112245799999999999999999999999999999999998864 577776542 344 789
Q ss_pred EEeecCCC--cccCC----CccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhCCC--CccCCCCCCceeccCCCC
Q 045962 243 VAEKWDSL--SYRQD----GKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPP--GFIGLLPQNAVTFIDNHD 314 (423)
Q Consensus 243 ~gE~~~~~--~~~~~----~~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~--~~~~~~~~~~~~f~~nHD 314 (423)
+||.|... .++.+ +...|+ +.+++.++.|+.+..+....+.. .+..... ......|..+++|+++||
T Consensus 375 igE~W~~~~~~~~~~~~~~~~~~~N-d~frd~ir~f~~g~~~~~~~~~~----~l~gs~~~~~~~~~~~~~~iNyv~~HD 449 (688)
T TIGR02100 375 IAEPWDIGPGGYQVGNFPPGWAEWN-DRYRDDMRRFWRGDAGMIGELAN----RLTGSSDLFEHNGRRPWASINFVTAHD 449 (688)
T ss_pred EEeeecCCCCcccccCCCCceEEec-HHHHHHHHHHHcCCCCcHHHHHH----HHhCCHhhccccCCCcCEEEEEEeCCC
Confidence 99999754 23221 123455 78999999998765544332221 1211100 011234677899999999
Q ss_pred CCCCCCC---------CC-----------------------------CChhhHHHHHHHHHcCCCceEEecCCCC-----
Q 045962 315 TGSTQRL---------WP-----------------------------FPSAKVMLGYAYILTHPGTPSIFYDHLF----- 351 (423)
Q Consensus 315 ~~r~~~~---------~~-----------------------------~~~~~~~~a~a~~~~~pG~P~iy~G~~~----- 351 (423)
+.+...+ .. ...++++++++++|+.||+||||||||+
T Consensus 450 ~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~ 529 (688)
T TIGR02100 450 GFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQ 529 (688)
T ss_pred CchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhccCCC
Confidence 9552110 00 0124678999999999999999999864
Q ss_pred ---------------Cc-------hhHHHHHHHHHHHHhcCcccccce-------------EEEee-------------c
Q 045962 352 ---------------DW-------DLKKEIGKLAAIRTKNGINTTSRV-------------NILAS-------------Q 383 (423)
Q Consensus 352 ---------------~w-------~~~~~~~~L~~lR~~~~~l~~g~~-------------~~~~~-------------~ 383 (423)
+| ++++++|+||+|||++|+|+.+.+ +++.. .
T Consensus 530 G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~w~~~~ 609 (688)
T TIGR02100 530 GNNNAYCQDNEIGWVDWSLDEGDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGEPMTEEDWENPE 609 (688)
T ss_pred CCCCCccCCCcccccCcccccccHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCCcCChhhcCCCC
Confidence 35 389999999999999999976533 33321 2
Q ss_pred CCEEEEEEC-----------CEEEEEECCC-CCcCccCCc---CeEEeeccC
Q 045962 384 SDLYVAAID-----------DKIITKIGPK-MDLRNLIPR---NFKVATSGK 420 (423)
Q Consensus 384 ~~~~~~~r~-----------~~~lv~in~~-~~~~~~~~~---~~~~~~~g~ 420 (423)
..+++|... +.++|++|.. .++...+|. .|+.++.+.
T Consensus 610 ~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~~~~w~~~~dt~ 661 (688)
T TIGR02100 610 TRLLCMVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGGGGRWELVLDTA 661 (688)
T ss_pred CCEEEEEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCCCCcEEEEecCC
Confidence 467887741 3589999964 445555663 799887664
No 14
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.6e-49 Score=408.79 Aligned_cols=326 Identities=20% Similarity=0.245 Sum_probs=230.2
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
+|+++++|+ + .|||+|++++|||||+||||+||||||+++ ++ ..+|||++.||++|+
T Consensus 97 YE~hv~~f~-~-----~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~--------~~--------~~~~GY~~~~~~~~~- 153 (542)
T TIGR02402 97 YELHVGTFT-P-----EGTFDAAIEKLPYLADLGITAIELMPVAQF--------PG--------TRGWGYDGVLPYAPH- 153 (542)
T ss_pred EEEEhhhcC-C-----CCCHHHHHHhhHHHHHcCCCEEEeCccccC--------CC--------CCCCCCCccCccccc-
Confidence 456666775 2 599999999999999999999999999943 33 578999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGE 182 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (423)
++|||.++|++||++||++||+||||+|+||++.++. +.. ...+ |... ...+
T Consensus 154 ~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~-----~~~-----~~~~--y~~~--------------~~~~-- 205 (542)
T TIGR02402 154 NAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGN-----YLP-----RYAP--YFTD--------------RYST-- 205 (542)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCccc-----ccc-----ccCc--cccC--------------CCCC--
Confidence 9999999999999999999999999999999986542 110 0000 1100 0000
Q ss_pred CCCCCCCCCCCCH---HHHHHHHHHHHHHHHhcCCCeEEecccCCCCH----HHHHHH---HHhcCC----CeEEEeecC
Q 045962 183 PFGPAPDIDHLNP---RVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----SITRLY---MKNTMP----HFTVAEKWD 248 (423)
Q Consensus 183 ~~~~~~dln~~~p---~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~----~~~~~~---~~~~~p----~~~~gE~~~ 248 (423)
...+++|+++| +||++|++++++|++++||||||+|+++++.. +||+++ +++++| ++++||.+.
T Consensus 206 --~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~ 283 (542)
T TIGR02402 206 --PWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDL 283 (542)
T ss_pred --CCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCC
Confidence 11246899999 99999999999999999999999999999863 488776 444544 689999884
Q ss_pred CC-cccC----C---CccchhhhHHHHHHHHHHHHhCC-cccccc--c-hhhhHhhhC--CC----C---------ccCC
Q 045962 249 SL-SYRQ----D---GKLDARQDAHRRNLKYWVQAAGR-AVTAFD--F-TTKGILQAA--PP----G---------FIGL 301 (423)
Q Consensus 249 ~~-~~~~----~---~~~~y~~~~~~~~~~~~~~~~~~-~~~~~d--f-~~~~~l~~~--~~----~---------~~~~ 301 (423)
.. .... + .+..|+ +.++..+..++.+... ..+.+. . .+...+... .. . ....
T Consensus 284 ~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~ 362 (542)
T TIGR02402 284 NDPSLVTPREDGGYGLDAQWN-DDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGDL 362 (542)
T ss_pred CCCcccccccCCccceEEEEC-chHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCCCC
Confidence 32 1111 1 133444 4567777776643211 111110 0 111112111 00 0 0001
Q ss_pred CCCCceeccCCCCC-------CCCCCCCCCChhhHHHHHHHHHcCCCceEEecCCCC-----------------------
Q 045962 302 LPQNAVTFIDNHDT-------GSTQRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLF----------------------- 351 (423)
Q Consensus 302 ~~~~~~~f~~nHD~-------~r~~~~~~~~~~~~~~a~a~~~~~pG~P~iy~G~~~----------------------- 351 (423)
.+...++|++|||+ .|..... ..++.++|.+++||+||+|+||||+|+
T Consensus 363 ~~~~~vnfl~nHD~~gn~~~~~Rl~~~~--~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~ 440 (542)
T TIGR02402 363 PPHRFVVFIQNHDQIGNRALGERLSQLL--SPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVRE 440 (542)
T ss_pred CHHHEEEEccCcccccccchhhhhhhcC--CHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHH
Confidence 23567999999997 4544433 347889999999999999999999852
Q ss_pred ------------------------------Cch---------hHHHHHHHHHHHHhcCcccccceEEEe----ecCCEEE
Q 045962 352 ------------------------------DWD---------LKKEIGKLAAIRTKNGINTTSRVNILA----SQSDLYV 388 (423)
Q Consensus 352 ------------------------------~w~---------~~~~~~~L~~lR~~~~~l~~g~~~~~~----~~~~~~~ 388 (423)
+|+ +++++|+||+|||++++|+.+..+.+. .++.+++
T Consensus 441 gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~ 520 (542)
T TIGR02402 441 GRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVA 520 (542)
T ss_pred hHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEE
Confidence 362 789999999999999999877644332 3556877
Q ss_pred EEE-CCEEEEEECCCCC
Q 045962 389 AAI-DDKIITKIGPKMD 404 (423)
Q Consensus 389 ~~r-~~~~lv~in~~~~ 404 (423)
+.. +++++|++|.+..
T Consensus 521 ~~~~~~~~~v~~N~~~~ 537 (542)
T TIGR02402 521 VRFGRGELVLAANLSTS 537 (542)
T ss_pred EEECCCeEEEEEeCCCC
Confidence 775 5689999997653
No 15
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=7.7e-49 Score=407.97 Aligned_cols=350 Identities=16% Similarity=0.110 Sum_probs=239.1
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhh-hHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRI-PDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH 101 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L-~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id 101 (423)
+|+++.+|+.... ..-|+|++++++| +|||+||||+|+||||+++ +. ..+|||++.+||+++
T Consensus 148 YE~Hvg~f~~~~~-g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~--------~~--------~~~wGY~~~~~~~~~ 210 (639)
T PRK14706 148 YEVHVGSWARRDD-GWFLNYRELAHRLGEYVTYMGYTHVELLGVMEH--------PF--------DGSWGYQVTGYYAPT 210 (639)
T ss_pred EEEehhhcccCCC-CCccCHHHHHHHHHHHHHHcCCCEEEccchhcC--------CC--------CCCCCcCcccccccc
Confidence 6788889974322 1247999999997 8999999999999999954 33 568999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 045962 102 ASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSG 181 (423)
Q Consensus 102 ~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (423)
++|||.++|++||++||++||+||||+|+||++.+.. ....|++...+...++. ... .
T Consensus 211 -~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~----~l~~~dg~~~y~~~~~~---------------~g~--~ 268 (639)
T PRK14706 211 -SRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDES----GLAHFDGGPLYEYADPR---------------KGY--H 268 (639)
T ss_pred -cccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchh----hhhccCCCcceeccCCc---------------CCc--C
Confidence 9999999999999999999999999999999987642 11122221000000000 000 0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC----------------------CHHHHHHH---HHh
Q 045962 182 EPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY----------------------APSITRLY---MKN 236 (423)
Q Consensus 182 ~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~----------------------~~~~~~~~---~~~ 236 (423)
..|.. ..+|+.+|+||++|++++++|++++||||||+|+++++ ...|++++ +++
T Consensus 269 ~~w~~-~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~ 347 (639)
T PRK14706 269 YDWNT-YIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHH 347 (639)
T ss_pred CCCCC-cccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHH
Confidence 11111 23899999999999999999999999999999998886 13577766 556
Q ss_pred cCC-CeEEEeecCCC-----cccC--CCccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhCCCCccCCCCCCcee
Q 045962 237 TMP-HFTVAEKWDSL-----SYRQ--DGKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVT 308 (423)
Q Consensus 237 ~~p-~~~~gE~~~~~-----~~~~--~~~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~ 308 (423)
.+| +++|||.+..- +... +.+..|+.+ ....+..|+...... ..++.. .+. .. ..........
T Consensus 348 ~~p~~~~iAE~~~~~~~v~~~~~~G~gFD~~w~~~-w~~~~l~~~~~~~~~-r~~~~~---~lt---~~-~~y~~~e~~i 418 (639)
T PRK14706 348 MAPGCMMIAEESTSFPGVTVPTPYGLGFDYKWAMG-WMNDTLAYFEQDPLW-RKYHHH---KLT---FF-NVYRTSENYV 418 (639)
T ss_pred hCCCeEEEEECCCCCcCcccccCCCCccccEeccH-HHHHHHHHhccCchh-hhhchh---ccc---hh-hhhhccccEe
Confidence 667 88999998641 1111 335555533 334444444321111 111100 000 00 0001111235
Q ss_pred ccCCCCCCCCCC--C---CCC----ChhhHHHHHHHHHcCCCceEEecCCCCC------------ch---------hHHH
Q 045962 309 FIDNHDTGSTQR--L---WPF----PSAKVMLGYAYILTHPGTPSIFYDHLFD------------WD---------LKKE 358 (423)
Q Consensus 309 f~~nHD~~r~~~--~---~~~----~~~~~~~a~a~~~~~pG~P~iy~G~~~~------------w~---------~~~~ 358 (423)
+++|||+.+... + ... ..+++++++++|+|+||+|+||||+|++ |. +.++
T Consensus 419 l~~SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l~~~~~~~~l~~~ 498 (639)
T PRK14706 419 LAISHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYLTDVPDHRGVMNL 498 (639)
T ss_pred cCCCCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcccCCHHHHHHHHH
Confidence 889999977421 1 111 1356889999999999999999999864 42 7789
Q ss_pred HHHHHHHHHhcCcccccc-----eEEEee---cCCEEEEEEC-----CEEEEEECCCC----CcCccC--CcCeEEeecc
Q 045962 359 IGKLAAIRTKNGINTTSR-----VNILAS---QSDLYVAAID-----DKIITKIGPKM----DLRNLI--PRNFKVATSG 419 (423)
Q Consensus 359 ~~~L~~lR~~~~~l~~g~-----~~~~~~---~~~~~~~~r~-----~~~lv~in~~~----~~~~~~--~~~~~~~~~g 419 (423)
+|+|++||+++|+|..|+ ++++.. ++.|++|.|. +.+|||+|.+. +..+.+ ++.|+.++|+
T Consensus 499 ~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~~~y~ig~p~~g~~~~i~ns 578 (639)
T PRK14706 499 VRRLNQLYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTPVYREQYRIGVPQGGEYRVLLST 578 (639)
T ss_pred HHHHHHHHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCCCCcCCeEECCCCCCeEEEEEcC
Confidence 999999999999998776 455543 4579999992 23899999644 222334 4589999988
Q ss_pred CC
Q 045962 420 KD 421 (423)
Q Consensus 420 ~~ 421 (423)
+.
T Consensus 579 d~ 580 (639)
T PRK14706 579 DD 580 (639)
T ss_pred Cc
Confidence 74
No 16
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=7.3e-49 Score=417.40 Aligned_cols=351 Identities=16% Similarity=0.191 Sum_probs=236.1
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhh-hHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRI-PDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH 101 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L-~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id 101 (423)
+++++.+|......+.-|+|++++++| ||||+||||+||||||+++ +. ..+|||++.||++|+
T Consensus 245 Ye~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~--------~~--------~~~~GY~~~~y~ai~ 308 (726)
T PRK05402 245 YEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEH--------PF--------DGSWGYQPTGYYAPT 308 (726)
T ss_pred EEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccC--------CC--------CCCCCCCcccCCCcC
Confidence 678888998332444468999999996 9999999999999999954 33 468999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 045962 102 ASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSG 181 (423)
Q Consensus 102 ~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (423)
|+|||.++|++||++||++||+||||+|+||++.++.. +..|++...+...++. .+. .
T Consensus 309 -~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~~~~~~------------~~~-----~ 366 (726)
T PRK05402 309 -SRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHG----LARFDGTALYEHADPR------------EGE-----H 366 (726)
T ss_pred -cccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc----hhccCCCcceeccCCc------------CCc-----c
Confidence 99999999999999999999999999999999865421 1112211000000000 000 0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---H
Q 045962 182 EPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITRLY---M 234 (423)
Q Consensus 182 ~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~ 234 (423)
..+ +..++|+++|+||++|++++++|++++||||||+|+++++ +.+||+++ +
T Consensus 367 ~~w-~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~ 445 (726)
T PRK05402 367 PDW-GTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVV 445 (726)
T ss_pred CCC-CCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHH
Confidence 001 1235899999999999999999999999999999988655 24788887 5
Q ss_pred HhcCC-CeEEEeecCCCc------ccC--CCccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhCCCCccCCCCCC
Q 045962 235 KNTMP-HFTVAEKWDSLS------YRQ--DGKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQN 305 (423)
Q Consensus 235 ~~~~p-~~~~gE~~~~~~------~~~--~~~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~ 305 (423)
++.+| ++++||.+...+ ..+ +.+..|+ ..+...+..|+........ +... .+.. ........
T Consensus 446 ~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn-~~~~~~~l~~~~~~~~~~~-~~~~---~~~~---~~~~~~~e- 516 (726)
T PRK05402 446 HEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWN-MGWMHDTLDYMERDPIYRK-YHHN---ELTF---SLLYAYSE- 516 (726)
T ss_pred HHHCCCeEEEEECCCCCcCccccccCCCCCCCceec-CCcchHHHHHHhhCccccc-cccc---chhH---HHhHhhhc-
Confidence 55667 889999764311 111 1122333 1223333344432211110 0000 0000 00000111
Q ss_pred ceeccCCCCCCCC-----CCCCCCC----hhhHHHHHHHHHcCCCceEEecCCCC------------Cch---------h
Q 045962 306 AVTFIDNHDTGST-----QRLWPFP----SAKVMLGYAYILTHPGTPSIFYDHLF------------DWD---------L 355 (423)
Q Consensus 306 ~~~f~~nHD~~r~-----~~~~~~~----~~~~~~a~a~~~~~pG~P~iy~G~~~------------~w~---------~ 355 (423)
...+++|||+.+. ....... .++++++++++||+||+||||||+|+ +|+ +
T Consensus 517 ~~~l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l 596 (726)
T PRK05402 517 NFVLPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGV 596 (726)
T ss_pred cccCCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHH
Confidence 2357789999542 1111111 24678999999999999999999864 462 8
Q ss_pred HHHHHHHHHHHHhcCcccccc-----eEEEee---cCCEEEEEEC-----CEEEEEECCCCC----cCccCC--cCeEEe
Q 045962 356 KKEIGKLAAIRTKNGINTTSR-----VNILAS---QSDLYVAAID-----DKIITKIGPKMD----LRNLIP--RNFKVA 416 (423)
Q Consensus 356 ~~~~~~L~~lR~~~~~l~~g~-----~~~~~~---~~~~~~~~r~-----~~~lv~in~~~~----~~~~~~--~~~~~~ 416 (423)
.+++|+|++||+++|+|+.|+ ++++.. ++.|++|.|. ++++|++|.+.. ....+| +.|+++
T Consensus 597 ~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~~g~~~~i 676 (726)
T PRK05402 597 QRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQAGRWREV 676 (726)
T ss_pred HHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEECCCCCCeEEEE
Confidence 889999999999999997654 455543 4579999993 579999997542 122344 489999
Q ss_pred eccCC
Q 045962 417 TSGKD 421 (423)
Q Consensus 417 ~~g~~ 421 (423)
++++.
T Consensus 677 lnsd~ 681 (726)
T PRK05402 677 LNTDA 681 (726)
T ss_pred EcCcc
Confidence 99874
No 17
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=2.7e-51 Score=397.25 Aligned_cols=286 Identities=23% Similarity=0.393 Sum_probs=193.7
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
|||+||+++|||||+|||++|||+||+ ++ +.++|||+|.||++|| |+|||++||++||++||
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~----------~~-------~~~~~gY~~~d~~~vd-~~~Gt~~d~~~Lv~~~h 62 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIF----------ES-------PNGYHGYDPSDYYAVD-PRFGTMEDFKELVDAAH 62 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-E----------ES-------SSSTTTTSESEEEEES-TTTBHHHHHHHHHHHHH
T ss_pred CCHHHHHHhhHHHHHcCCCceeccccc----------cc-------ccccccccceeeeccc-cccchhhhhhhhhhccc
Confidence 799999999999999999999999999 65 2389999999999999 99999999999999999
Q ss_pred HcCCEEEEEEecccCCCCCCC----------CcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 045962 120 KKGIKCLADIVINHRTAEKKD----------RRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPD 189 (423)
Q Consensus 120 ~~Gi~VilD~V~nh~~~~~~~----------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 189 (423)
++||+||+|+|+||++.+|+. +...|+.+.+.....+.+|.... ....|.... .......+..+||
T Consensus 63 ~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~d 138 (316)
T PF00128_consen 63 KRGIKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYF---GGSNWEYDD-WGDEYQFWSDLPD 138 (316)
T ss_dssp HTTCEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCST---TTSSEESCH-HTHCHSSSTTSEE
T ss_pred cccceEEEeeeccccccccccccccccccccccccceeeccccccccccccccc---ccccccccc-cccccccccccch
Confidence 999999999999999998841 12334444322112222222110 111111000 0000357889999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcC---C-CeEEEeecCCCcc-----cCCCccch
Q 045962 190 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTM---P-HFTVAEKWDSLSY-----RQDGKLDA 260 (423)
Q Consensus 190 ln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~---p-~~~~gE~~~~~~~-----~~~~~~~y 260 (423)
||++||+||++|++++++|++ .||||||+|+|+++++++|+++.++++ | .+++||.+..... .......+
T Consensus 139 ln~~n~~v~~~i~~~~~~w~~-~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~ 217 (316)
T PF00128_consen 139 LNYENPEVREYIIDVLKFWIE-EGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAYDGYFDL 217 (316)
T ss_dssp BETTSHHHHHHHHHHHHHHHH-TTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHHHGTTSH
T ss_pred hhhhhhhhhhhhcccccchhh-ceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCCccccchhhhcccccc
Confidence 999999999999999999997 889999999999999999999965543 4 8899999976321 00000000
Q ss_pred h--hhH-HHHHHHHHHH-HhCCccccccchhhhHhhhCCCCccCCCCCCceeccCCCCCCCCCCCCCCChhhHHHHHHHH
Q 045962 261 R--QDA-HRRNLKYWVQ-AAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYI 336 (423)
Q Consensus 261 ~--~~~-~~~~~~~~~~-~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~ 336 (423)
. .+. .......... ...+..... .+...+...... ...+...++|++|||+.|..+.......++++|++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~l 293 (316)
T PF00128_consen 218 DSVFDFPDYGLRSSFFDFWRHGDGDAS--DLANWLSSWQSS--YPDPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFL 293 (316)
T ss_dssp SEEEHHHHHHHHHHHHHHHTTTSSHHH--HHHHHHHHHHHH--STTGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHH
T ss_pred chhhcccccccccchhhhhccccchhh--hhhhhhhhhhhh--hcccceeeecccccccccchhhhcccchHHHHHHHHH
Confidence 0 000 0101111110 001110000 011111111000 0114567899999999997666554334789999999
Q ss_pred HcCCCceEEecCCCCC
Q 045962 337 LTHPGTPSIFYDHLFD 352 (423)
Q Consensus 337 ~~~pG~P~iy~G~~~~ 352 (423)
||+||+|+||||+|++
T Consensus 294 l~~pG~P~iy~G~E~g 309 (316)
T PF00128_consen 294 LTSPGIPMIYYGDEIG 309 (316)
T ss_dssp HHSSSEEEEETTGGGT
T ss_pred HcCCCccEEEeChhcc
Confidence 9999999999999975
No 18
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=3.7e-49 Score=411.02 Aligned_cols=364 Identities=19% Similarity=0.263 Sum_probs=245.2
Q ss_pred CceeeeeeecccC----CCCCCcHHHHHh--hhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccc
Q 045962 23 PTILFQGFNWESC----NKKGGWYNFLKK--RIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGR 96 (423)
Q Consensus 23 ~~v~~~~F~~d~~----~~~~G~~~~~~~--~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d 96 (423)
+|+++++|+ ... .+..|+|.++++ +|||||+||||+||||||+++..+... . ......+|||+|.|
T Consensus 154 YE~hvr~ft-~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~---~----~~g~~~ywGYd~~~ 225 (658)
T PRK03705 154 YEAHVRGLT-YLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRL---Q----RMGLSNYWGYNPLA 225 (658)
T ss_pred EEEehhhhc-ccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccc---c----ccccccccCccccc
Confidence 577788887 322 234799999997 499999999999999999965322110 0 01124789999999
Q ss_pred cCCCCCCCCCCH-----HHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCC
Q 045962 97 LYDLHASSYGSQ-----NELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTY 171 (423)
Q Consensus 97 ~~~id~~~~Gt~-----~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 171 (423)
||+|+ ++|||. +|||+||++||++||+||||+|+||++... ..+.+..+++-.+ ..|. |
T Consensus 226 yfa~d-~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~--~~~~~~~~~~~d~---~~yy----------~ 289 (658)
T PRK03705 226 MFALD-PAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELD--LDGPTLSLRGIDN---RSYY----------W 289 (658)
T ss_pred ccccc-cccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcC--CCCcchhcccCCC---ccce----------E
Confidence 99999 999984 799999999999999999999999998642 1222222222110 0110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH--HHH------HHHHH-hcCC-Ce
Q 045962 172 SDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP--SIT------RLYMK-NTMP-HF 241 (423)
Q Consensus 172 ~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~--~~~------~~~~~-~~~p-~~ 241 (423)
.+..+.+.. +....++||+++|+|+++|++++++|++++||||||+|+++++.+ +|+ +.+.. .+.+ ++
T Consensus 290 ~~~~g~~~~--~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~ 367 (658)
T PRK03705 290 IREDGDYHN--WTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVK 367 (658)
T ss_pred ECCCCCcCC--CCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceE
Confidence 001111111 112346899999999999999999999999999999999999873 233 33321 2333 77
Q ss_pred EEEeecCCC--cccCC----CccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhCC--CCccCCCCCCceeccCCC
Q 045962 242 TVAEKWDSL--SYRQD----GKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAP--PGFIGLLPQNAVTFIDNH 313 (423)
Q Consensus 242 ~~gE~~~~~--~~~~~----~~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~--~~~~~~~~~~~~~f~~nH 313 (423)
++||.|... .++.+ +...|+ +.+++.++.|+.+...... ++..+ +.... .......|...++|+++|
T Consensus 368 ligE~Wd~~~~~~~~g~~~~~~~~~N-d~fRd~ir~f~~~~~~~~~--~~~~~--l~gs~~~~~~~~~~p~~siNyv~~H 442 (658)
T PRK03705 368 LIAEPWDIGPGGYQVGNFPPPFAEWN-DHFRDAARRFWLHGDLPLG--EFAGR--FAASSDVFKRNGRLPSASINLVTAH 442 (658)
T ss_pred EEEecccCCCChhhhcCCCcceEEEc-hHHHHHHHHHHccCCCcHH--HHHHH--HhcchhhccccCCCCCeEEEEEEeC
Confidence 999999763 23322 123555 7899999988764433222 22211 21110 011223578889999999
Q ss_pred CCCCCCCCC-----------------------------C---------CChhhHHHHHHHHHcCCCceEEecCCCC----
Q 045962 314 DTGSTQRLW-----------------------------P---------FPSAKVMLGYAYILTHPGTPSIFYDHLF---- 351 (423)
Q Consensus 314 D~~r~~~~~-----------------------------~---------~~~~~~~~a~a~~~~~pG~P~iy~G~~~---- 351 (423)
|+.+...+. + ...++.+++++++|+.+|+||||+|||+
T Consensus 443 D~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~grtq 522 (658)
T PRK03705 443 DGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGHSQ 522 (658)
T ss_pred CCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhccCC
Confidence 984321100 0 0123568899999999999999999864
Q ss_pred ----------------Cc-----hhHHHHHHHHHHHHhcCcccccce--------EEEeec------------CCEEEEE
Q 045962 352 ----------------DW-----DLKKEIGKLAAIRTKNGINTTSRV--------NILASQ------------SDLYVAA 390 (423)
Q Consensus 352 ----------------~w-----~~~~~~~~L~~lR~~~~~l~~g~~--------~~~~~~------------~~~~~~~ 390 (423)
+| ++++++|+||+|||++|+|+..++ .++..+ ...+++.
T Consensus 523 ~G~nN~y~~~~~i~~~dW~~~~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~~~~~~ 602 (658)
T PRK03705 523 HGNNNAYCQDNALTWLDWSQADRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPKQLQIL 602 (658)
T ss_pred CCCCCCccCCCCccccccchhhhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcceEEEEE
Confidence 35 399999999999999999975443 343322 2456666
Q ss_pred ECCEEEEEECCC-CCcCccCC-cCeEEee
Q 045962 391 IDDKIITKIGPK-MDLRNLIP-RNFKVAT 417 (423)
Q Consensus 391 r~~~~lv~in~~-~~~~~~~~-~~~~~~~ 417 (423)
..+.++|++|.. .++...+| +.|+.+.
T Consensus 603 ~~~~~~v~~N~~~~~~~~~lp~~~w~~~~ 631 (658)
T PRK03705 603 LSDRWLIAINATLEVTEIVLPEGEWHAIP 631 (658)
T ss_pred ECCCEEEEECCCCCCeEEECCCcceEEEE
Confidence 677899999953 45556677 4898883
No 19
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-47 Score=398.12 Aligned_cols=346 Identities=16% Similarity=0.156 Sum_probs=241.0
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhh-hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKR-IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH 101 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~-L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id 101 (423)
+|+++.+|+. ......+++++++++ |+|||+||||+||||||+++ +. ..+|||++.+||+++
T Consensus 250 YEvHvgsf~~-~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~--------~~--------~~~wGY~~~~~~a~~ 312 (730)
T PRK12568 250 YEVHAASWRR-DGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEH--------PF--------GGSWGYQPLGLYAPT 312 (730)
T ss_pred EEEEhHHhcC-CCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccC--------CC--------CCCCCCCCCcCCccC
Confidence 6888999984 333345799999998 59999999999999999954 33 468999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 045962 102 ASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSG 181 (423)
Q Consensus 102 ~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (423)
++||+.++|++||++||++||+||||+|+||++.+.. .+..|++...+...+. ..+ ..
T Consensus 313 -~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~----~l~~fdg~~~Ye~~d~------------~~g-----~~ 370 (730)
T PRK12568 313 -ARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAH----GLAQFDGAALYEHADP------------REG-----MH 370 (730)
T ss_pred -cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcccc----ccccCCCccccccCCC------------cCC-----cc
Confidence 9999999999999999999999999999999997642 1122322110100000 000 01
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC------------------------HHHHHHH---H
Q 045962 182 EPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA------------------------PSITRLY---M 234 (423)
Q Consensus 182 ~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~------------------------~~~~~~~---~ 234 (423)
..|..+ .+|+.+|+|+++|++++++|++++||||||+|+++++- .+||+++ +
T Consensus 371 ~~W~~~-~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v 449 (730)
T PRK12568 371 RDWNTL-IYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREI 449 (730)
T ss_pred CCCCCe-ecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHH
Confidence 122222 48999999999999999999999999999999987651 3578877 5
Q ss_pred HhcCC-CeEEEeecCCCc-----cc-C--CCccchhhhHHHHHHHHHHHHhCCcc----ccccchhhhHhhhCCCCccCC
Q 045962 235 KNTMP-HFTVAEKWDSLS-----YR-Q--DGKLDARQDAHRRNLKYWVQAAGRAV----TAFDFTTKGILQAAPPGFIGL 301 (423)
Q Consensus 235 ~~~~p-~~~~gE~~~~~~-----~~-~--~~~~~y~~~~~~~~~~~~~~~~~~~~----~~~df~~~~~l~~~~~~~~~~ 301 (423)
++..| +++|||.+..-+ .. . +.+..|+.+ ....+..|+...+... ..+.|.+.+
T Consensus 450 ~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~g-wm~d~l~y~~~dp~~r~~~h~~ltf~~~y------------ 516 (730)
T PRK12568 450 ASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMG-WMHDTLHYMQRDPAERAHHHSQLTFGLVY------------ 516 (730)
T ss_pred HHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCCh-hHHHHHHHHhhCchhhhhhhhhhhhhhhh------------
Confidence 56677 889999865321 11 1 235566633 3445556665432211 111111111
Q ss_pred CCCCceeccCCCCCCC-----CCCCCCC----ChhhHHHHHHHHHcCCCceEEecCCCC------------Cch------
Q 045962 302 LPQNAVTFIDNHDTGS-----TQRLWPF----PSAKVMLGYAYILTHPGTPSIFYDHLF------------DWD------ 354 (423)
Q Consensus 302 ~~~~~~~f~~nHD~~r-----~~~~~~~----~~~~~~~a~a~~~~~pG~P~iy~G~~~------------~w~------ 354 (423)
.-+..+.+..|||+-- ....... ..+.+|..+++|+|.||.||||+|+|+ +|.
T Consensus 517 ~~~e~fvlp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~ 596 (730)
T PRK12568 517 AFSERFVLPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGAR 596 (730)
T ss_pred hhhccEeccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChh
Confidence 0112356789999932 1111111 124678999999999999999999876 352
Q ss_pred ---hHHHHHHHHHHHHhcCcccccc-----eEEEeec---CCEEEEEEC------CEEEEEECCC------CCcCccCCc
Q 045962 355 ---LKKEIGKLAAIRTKNGINTTSR-----VNILASQ---SDLYVAAID------DKIITKIGPK------MDLRNLIPR 411 (423)
Q Consensus 355 ---~~~~~~~L~~lR~~~~~l~~g~-----~~~~~~~---~~~~~~~r~------~~~lv~in~~------~~~~~~~~~ 411 (423)
+.++++.|++||+++|+|..++ ++++..+ +.|++|.|. +.+|||+|-+ +.++.+.++
T Consensus 597 h~~~~~~~~dLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~~G 676 (730)
T PRK12568 597 HRGMQQLVGDLNAALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPRAG 676 (730)
T ss_pred HHHHHHHHHHHHHHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCCCccCeEECCCCCC
Confidence 7889999999999999996543 6677543 479999992 3488999943 223444556
Q ss_pred CeEEeeccCC
Q 045962 412 NFKVATSGKD 421 (423)
Q Consensus 412 ~~~~~~~g~~ 421 (423)
.|+.++|++.
T Consensus 677 ~~~eilNsd~ 686 (730)
T PRK12568 677 GWREILNTDS 686 (730)
T ss_pred eEEEEEcCch
Confidence 9999999874
No 20
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.2e-47 Score=422.82 Aligned_cols=329 Identities=17% Similarity=0.213 Sum_probs=222.2
Q ss_pred CceeeeeeecccC---CCCCCcHHHHH--hhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCccccc
Q 045962 23 PTILFQGFNWESC---NKKGGWYNFLK--KRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRL 97 (423)
Q Consensus 23 ~~v~~~~F~~d~~---~~~~G~~~~~~--~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~ 97 (423)
+++++++|+.... ++..|+++++. ++|+|||+||||+||||||+++..+...- ......||||++.||
T Consensus 162 YE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~-------~~g~~~yWGY~~~~y 234 (1221)
T PRK14510 162 YEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLP-------QLGLSNYWGYNTVAF 234 (1221)
T ss_pred EEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccc-------cccCcCcCCCCCCCC
Confidence 4667788874221 23356666666 55679999999999999999653221100 011257899999999
Q ss_pred CCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCC
Q 045962 98 YDLHASSYG--SQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGR 175 (423)
Q Consensus 98 ~~id~~~~G--t~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (423)
++|| |+|| +.+|||+||++||++||+||||+|+||++.++.. +.-..+.+... ..|.. .. .+..
T Consensus 235 fa~d-p~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~--~p~~~~~~~d~---~~yy~----~~----~~~~ 300 (1221)
T PRK14510 235 LAPD-PRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHY--GPTLSAYGSDN---SPYYR----LE----PGNP 300 (1221)
T ss_pred CCcC-hhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCC--CCcccccCCCC---CCceE----ec----CCCC
Confidence 9999 9999 9999999999999999999999999999976521 11111111000 00100 00 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC---CHHHHHHH---HHhcCC-Ce-----EE
Q 045962 176 GHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY---APSITRLY---MKNTMP-HF-----TV 243 (423)
Q Consensus 176 ~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~---~~~~~~~~---~~~~~p-~~-----~~ 243 (423)
..+.....+..+ +|+++|.|++++++++++|++ +||||||+|+|+++ +.+||+++ +++++| .+ ++
T Consensus 301 ~~y~~~~G~gn~--~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~li 377 (1221)
T PRK14510 301 KEYENWWGCGNL--PNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMI 377 (1221)
T ss_pred CcccCCCCCCCc--cccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEE
Confidence 111111222233 566799999999999999999 99999999999999 88898775 666655 33 49
Q ss_pred EeecCCCc--ccCCC----ccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhCCCCcc--CCCCCCceeccCCCCC
Q 045962 244 AEKWDSLS--YRQDG----KLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFI--GLLPQNAVTFIDNHDT 315 (423)
Q Consensus 244 gE~~~~~~--~~~~~----~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~--~~~~~~~~~f~~nHD~ 315 (423)
||.|...+ ++.+. ...++ +.+++.++.|+.+..+....+ ...+......+. ...+...++|++|||+
T Consensus 378 gE~Wd~~~~~~~~g~f~~~~~~~N-~~frd~vr~f~~g~~~~~~~~----a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~ 452 (1221)
T PRK14510 378 AEVWDDGLGGYQYGKFPQYWGEWN-DPLRDIMRRFWLGDIGMAGEL----ATRLAGSADIFPHRRRNFSRSINFITAHDG 452 (1221)
T ss_pred EecccCCCCccccCCCCcceeeec-cHHHHHHHHHhcCCCchHHHH----HHHHhCcHhhcCccCCCcccceEEEeeCCc
Confidence 99997632 33222 12344 668889988886543322111 111211111111 2345678999999999
Q ss_pred CCCCCCCCC--------------------------------------ChhhHHHHHHHHHcCCCceEEecCCCCC-----
Q 045962 316 GSTQRLWPF--------------------------------------PSAKVMLGYAYILTHPGTPSIFYDHLFD----- 352 (423)
Q Consensus 316 ~r~~~~~~~--------------------------------------~~~~~~~a~a~~~~~pG~P~iy~G~~~~----- 352 (423)
.|...+..+ ..++++++++++||.||+||||||||++
T Consensus 453 ~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE~g~tq~G 532 (1221)
T PRK14510 453 FTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDEAGRSQNG 532 (1221)
T ss_pred hHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchhcccccCC
Confidence 764322110 1235789999999999999999999864
Q ss_pred ---------------c-----hhHHHHHHHHHHHHhcCcccccceEEE
Q 045962 353 ---------------W-----DLKKEIGKLAAIRTKNGINTTSRVNIL 380 (423)
Q Consensus 353 ---------------w-----~~~~~~~~L~~lR~~~~~l~~g~~~~~ 380 (423)
| ++++++|+||+|||++|+|+.|.+...
T Consensus 533 n~n~y~~~~~r~~~~W~~~~~~l~~f~k~Li~lRk~~~~L~~g~~~~~ 580 (1221)
T PRK14510 533 NNNGYAQDNNRGTYPWGNEDEELLSFFRRLIKLRREYGVLRQGEFSSG 580 (1221)
T ss_pred CCCCCCCCCccccCCcccccHHHHHHHHHHHHHHHhChhhccCccccC
Confidence 4 389999999999999999998887643
No 21
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=8.2e-46 Score=401.44 Aligned_cols=341 Identities=17% Similarity=0.147 Sum_probs=234.5
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhh-hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKR-IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH 101 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~-L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id 101 (423)
+|+++.+|. + +|+|++++++ |||||+||||+||||||+++ +. ..+|||++++||+++
T Consensus 751 YEvHvgsf~-~-----~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~--------p~--------~~swGY~~~~y~ap~ 808 (1224)
T PRK14705 751 YEVHLGSWR-L-----GLGYRELAKELVDYVKWLGFTHVEFMPVAEH--------PF--------GGSWGYQVTSYFAPT 808 (1224)
T ss_pred EEEEecccc-c-----CCchHHHHHHHHHHHHHhCCCEEEECccccC--------CC--------CCCCCCCccccCCcC
Confidence 577788886 3 4789999988 59999999999999999965 33 578999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 045962 102 ASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSG 181 (423)
Q Consensus 102 ~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (423)
++|||.+|||+||++||++||+||||+|+||++.+.- ....|++...+... +..... .
T Consensus 809 -~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~----~l~~fdg~~~y~~~---------------d~~~g~--~ 866 (1224)
T PRK14705 809 -SRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW----ALAQFDGQPLYEHA---------------DPALGE--H 866 (1224)
T ss_pred -cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchh----hhhhcCCCcccccC---------------CcccCC--C
Confidence 9999999999999999999999999999999976531 00112221000000 000000 1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---H
Q 045962 182 EPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITRLY---M 234 (423)
Q Consensus 182 ~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~ 234 (423)
..|. ...+|+++++||++|++++++|+++|||||||+|+++++ ..+|++++ +
T Consensus 867 ~~Wg-~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v 945 (1224)
T PRK14705 867 PDWG-TLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATV 945 (1224)
T ss_pred CCCC-CceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHH
Confidence 1121 235999999999999999999999999999999999876 24688887 4
Q ss_pred HhcCC-CeEEEeecCCCc-----ccC---CCccchhhhHHHHHHHHHHHHhCCcc----ccccchhhhHhhhCCCCccCC
Q 045962 235 KNTMP-HFTVAEKWDSLS-----YRQ---DGKLDARQDAHRRNLKYWVQAAGRAV----TAFDFTTKGILQAAPPGFIGL 301 (423)
Q Consensus 235 ~~~~p-~~~~gE~~~~~~-----~~~---~~~~~y~~~~~~~~~~~~~~~~~~~~----~~~df~~~~~l~~~~~~~~~~ 301 (423)
++..| +++|||.+..-+ ... +.+..|+.+. ...+..|+...+... ...-|.+.+.
T Consensus 946 ~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgw-mhd~l~Y~~~dp~~r~~~~~~ltf~~~ya----------- 1013 (1224)
T PRK14705 946 YKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGW-MHDSLKYASEDPINRKWHHGTITFSLVYA----------- 1013 (1224)
T ss_pred HHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchh-hHHHHHHhhhCcchhhcccchHHHHHHHH-----------
Confidence 44566 889999886421 111 3456666443 344445655432110 0011111111
Q ss_pred CCCCceeccCCCCCCCC--CCC-CCC------ChhhHHHHHHHHHcCCCceEEecCCCCC------------ch------
Q 045962 302 LPQNAVTFIDNHDTGST--QRL-WPF------PSAKVMLGYAYILTHPGTPSIFYDHLFD------------WD------ 354 (423)
Q Consensus 302 ~~~~~~~f~~nHD~~r~--~~~-~~~------~~~~~~~a~a~~~~~pG~P~iy~G~~~~------------w~------ 354 (423)
....+.+..|||+... .++ ... ..+.+++++++|++.||+|+||+|+|++ |.
T Consensus 1014 -~~e~fvl~~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~ 1092 (1224)
T PRK14705 1014 -FTENFLLPISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPA 1092 (1224)
T ss_pred -hhcCEecccccccccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChh
Confidence 1112455678998421 111 111 1235788999999999999999999763 42
Q ss_pred ---hHHHHHHHHHHHHhcCcccccc-----eEEEee---cCCEEEEEEC----CEEEEEECCCCC------cCccCCcCe
Q 045962 355 ---LKKEIGKLAAIRTKNGINTTSR-----VNILAS---QSDLYVAAID----DKIITKIGPKMD------LRNLIPRNF 413 (423)
Q Consensus 355 ---~~~~~~~L~~lR~~~~~l~~g~-----~~~~~~---~~~~~~~~r~----~~~lv~in~~~~------~~~~~~~~~ 413 (423)
+.++++.|++||+++|+|..++ ++++.. ++.|++|.|. +.+||++|.+.. ++.+.++.|
T Consensus 1093 h~~~~~~~rdLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~~y~igvp~~G~y 1172 (1224)
T PRK14705 1093 HRGIQLLTKDLNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGGPHKGYTLGVPAAGAW 1172 (1224)
T ss_pred hHHHHHHHHHHHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCCCccCceECCCCCCeE
Confidence 7789999999999999996443 667643 4579999992 468899995321 222334589
Q ss_pred EEeeccCC
Q 045962 414 KVATSGKD 421 (423)
Q Consensus 414 ~~~~~g~~ 421 (423)
+.++|++.
T Consensus 1173 ~eilnsd~ 1180 (1224)
T PRK14705 1173 TEVLNTDH 1180 (1224)
T ss_pred EEEEeCch
Confidence 99998874
No 22
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=4.9e-45 Score=393.28 Aligned_cols=371 Identities=17% Similarity=0.233 Sum_probs=239.6
Q ss_pred CceeeeeeecccCC-----CCCCcHHHHHhhhhHHHHcCCcEEEcCCccccC--CCCc-cccccccccccCCCCCCCCcc
Q 045962 23 PTILFQGFNWESCN-----KKGGWYNFLKKRIPDIASAGITHVWLSSTFSLC--CSPR-LFFHSIIHQAYSHASLAGYMP 94 (423)
Q Consensus 23 ~~v~~~~F~~d~~~-----~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~--~~~~-~~~~~~~~~~~~~~~~~GY~~ 94 (423)
+|+++++|+.+... ...|+|++++++|+|||+||||+||||||+++. .+.. ..... .........+|||+|
T Consensus 455 YElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~-~~~~~~~~ynWGYdp 533 (1111)
T TIGR02102 455 YEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERML-DYASSNTNYNWGYDP 533 (1111)
T ss_pred EEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccc-cccccccccccCCCc
Confidence 67888999854331 136999999999999999999999999999641 1100 00000 000000124599999
Q ss_pred cccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCcccc
Q 045962 95 GRLYDLHASSYGS--------QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICR 166 (423)
Q Consensus 95 ~d~~~id~~~~Gt--------~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 166 (423)
.+||+++ ++||+ .+|||+||++||++||+||||+|+||++..+. |++-.+ .|. +.
T Consensus 534 ~~yfape-~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~--------f~~~~p----~Yy---~~- 596 (1111)
T TIGR02102 534 QNYFALS-GMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI--------FEDLEP----NYY---HF- 596 (1111)
T ss_pred CcCcccc-cccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc--------ccccCC----Cce---Ee-
Confidence 9999999 99997 58999999999999999999999999987642 221111 110 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHH---HhcCC-CeE
Q 045962 167 DDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYM---KNTMP-HFT 242 (423)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~~---~~~~p-~~~ 242 (423)
.+..+...... ...+++.++|.||++|++++++|+++|||||||+|++.+++.++++.+. ++++| +++
T Consensus 597 -----~~~~G~~~~~~---~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~l 668 (1111)
T TIGR02102 597 -----MDADGTPRTSF---GGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIM 668 (1111)
T ss_pred -----eCCCCCccccc---CCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEE
Confidence 00000110010 1235899999999999999999999999999999999999999888874 45677 889
Q ss_pred EEeecCCC----cccCC----Cccchh--hhHHHHHHHHHHHHhCCcc--------ccccc-hhhhHhhhCCCCccCCCC
Q 045962 243 VAEKWDSL----SYRQD----GKLDAR--QDAHRRNLKYWVQAAGRAV--------TAFDF-TTKGILQAAPPGFIGLLP 303 (423)
Q Consensus 243 ~gE~~~~~----~~~~~----~~~~y~--~~~~~~~~~~~~~~~~~~~--------~~~df-~~~~~l~~~~~~~~~~~~ 303 (423)
+||.|... .+... ..+.+. ...+...++.++++..... ...+. .+...+...........|
T Consensus 669 iGE~W~~~~g~~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~~~~~P 748 (1111)
T TIGR02102 669 IGEGWRTYAGDEGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNFEADSP 748 (1111)
T ss_pred EEecccccCCCCcccccccchhhHhcCCcccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccccccCCc
Confidence 99999741 11100 001111 0223334444444211100 00000 011111111111223468
Q ss_pred CCceeccCCCCCCCCCCCCCC--------C------hhhHHHHHHHHHcCCCceEEecCCCC------------------
Q 045962 304 QNAVTFIDNHDTGSTQRLWPF--------P------SAKVMLGYAYILTHPGTPSIFYDHLF------------------ 351 (423)
Q Consensus 304 ~~~~~f~~nHD~~r~~~~~~~--------~------~~~~~~a~a~~~~~pG~P~iy~G~~~------------------ 351 (423)
...++|++|||+.+..-.... . .+|.+++.+++|+.+|+|+|++||||
T Consensus 749 ~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~~~~~~ 828 (1111)
T TIGR02102 749 GDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRTPVSED 828 (1111)
T ss_pred ccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCccccccccccc
Confidence 889999999999775211110 1 13778999999999999999999753
Q ss_pred ------------------------------------Cc-------------hhHHHHHHHHHHHHhcCcccccce-----
Q 045962 352 ------------------------------------DW-------------DLKKEIGKLAAIRTKNGINTTSRV----- 377 (423)
Q Consensus 352 ------------------------------------~w-------------~~~~~~~~L~~lR~~~~~l~~g~~----- 377 (423)
+| +++++++.||+||+++|+|+.+..
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~~~i~~ 908 (1111)
T TIGR02102 829 KVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGSKALVDR 908 (1111)
T ss_pred ccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccccccchhhhcC
Confidence 12 158899999999999999976653
Q ss_pred --EEEeec--------CCEEEEEE----CCEEEEEECCC-CCcCccCCc------CeEEeecc
Q 045962 378 --NILASQ--------SDLYVAAI----DDKIITKIGPK-MDLRNLIPR------NFKVATSG 419 (423)
Q Consensus 378 --~~~~~~--------~~~~~~~r----~~~~lv~in~~-~~~~~~~~~------~~~~~~~g 419 (423)
.++... +.+++|.. ++.++|++|.. ......+|. .|.++..+
T Consensus 909 ~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~~~~~~~lp~~~~~~~~~~v~~~~ 971 (1111)
T TIGR02102 909 KVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADDKARTLTLGEDYAHLTVGEVVVDA 971 (1111)
T ss_pred cEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCCCCEEEECCCCcccccceEEEEcc
Confidence 333332 57888875 35789999954 334455665 47776654
No 23
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=1.2e-45 Score=367.25 Aligned_cols=332 Identities=16% Similarity=0.186 Sum_probs=237.9
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
++|++.+|. |+.+++.|++++++++ ||++ ||++|||+|+| ++ .+++||+|.||+.||
T Consensus 1 n~v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPff----------ps--------~sD~GYdv~DY~~VD- 57 (470)
T TIGR03852 1 NKAMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFF----------PS--------TGDRGFAPMDYTEVD- 57 (470)
T ss_pred CCceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCC----------cC--------CCCCCcCchhhceeC-
Confidence 478999999 9999888999999988 9999 79999999999 77 579999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCC-----------CCccccee-c----cCCCCCCCCCCCCCcccc
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKK-----------DRRGIWCI-F----EGGTPDKRLDWGPSFICR 166 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~-----------~~~~~~~~-f----~~~~~~~~~~~~~~~~~~ 166 (423)
|+|||++||++|+++ |+||+|+|+||+|..|+ ++..+||. + ..+. .+..++...+...
T Consensus 58 P~~Gt~~Df~~L~~~-----~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~-~~~~d~~~v~~~~ 131 (470)
T TIGR03852 58 PAFGDWSDVEALSEK-----YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGR-PTQEDVDLIYKRK 131 (470)
T ss_pred cccCCHHHHHHHHHh-----hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCC-ccccccccccCCC
Confidence 999999999999997 89999999999999883 22334554 2 2110 0011221111111
Q ss_pred C-----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH--------------
Q 045962 167 D-----DTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-------------- 227 (423)
Q Consensus 167 ~-----~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~-------------- 227 (423)
. .+.|.++...+..+.+...|||||+.||.|++++.+++++|++ .||||||+||+.++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~ 210 (470)
T TIGR03852 132 DRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKKLGTNDFFVEPEIW 210 (470)
T ss_pred CCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhcccCCCCcccCChhHH
Confidence 0 1223445556677788899999999999999999999999996 9999999999966643
Q ss_pred HHHHHHHHh-cCC-CeEEEeecCCCcccCCCccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhCC--------CC
Q 045962 228 SITRLYMKN-TMP-HFTVAEKWDSLSYRQDGKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAP--------PG 297 (423)
Q Consensus 228 ~~~~~~~~~-~~p-~~~~gE~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~--------~~ 297 (423)
++++++.+. ..| ..+++|++....++. .........|+|++...+-.+. ..
T Consensus 211 ~~l~~~r~~~~~~~~~ll~E~~~~~~~~~-------------------~~gde~~mvY~F~lppl~l~al~~~~~~~l~~ 271 (470)
T TIGR03852 211 ELLDEVRDILAPTGAEILPEIHEHYTIQF-------------------KIAEHGYYVYDFALPMLVLYSLYSGKTNRLAD 271 (470)
T ss_pred HHHHHHHHHhccCCCEEEeHhhhhccccc-------------------ccccceeEEccCccchhhHHHhhccCHHHHHH
Confidence 234444332 233 889999974322210 0011334456666655443320 01
Q ss_pred ccCCCCCCceeccCCCCC--------------------------CCCC---------CC------------CCCChhhHH
Q 045962 298 FIGLLPQNAVTFIDNHDT--------------------------GSTQ---------RL------------WPFPSAKVM 330 (423)
Q Consensus 298 ~~~~~~~~~~~f~~nHD~--------------------------~r~~---------~~------------~~~~~~~~~ 330 (423)
.....|...++|++|||. ++.. .. .....++..
T Consensus 272 wl~~~p~~~~nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~ 351 (470)
T TIGR03852 272 WLRKSPMKQFTTLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYL 351 (470)
T ss_pred HHHhCcccceEEeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHH
Confidence 122345556899999999 1100 01 011346789
Q ss_pred HHHHHHHcCCCceEEecCCCCCc--------------------------------hhHHHHHHHHHHHHhcCcccc-cce
Q 045962 331 LGYAYILTHPGTPSIFYDHLFDW--------------------------------DLKKEIGKLAAIRTKNGINTT-SRV 377 (423)
Q Consensus 331 ~a~a~~~~~pG~P~iy~G~~~~w--------------------------------~~~~~~~~L~~lR~~~~~l~~-g~~ 377 (423)
+|.+++|++||+|.||||++.+- ...+-+.+|+++|+++|++.. |.+
T Consensus 352 ~a~ai~~~lpGiP~iYy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~ 431 (470)
T TIGR03852 352 LARAIQFFAPGIPQVYYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSI 431 (470)
T ss_pred HHHHHHHcCCCCceEEechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCce
Confidence 99999999999999999986542 156666779999999999965 999
Q ss_pred EEEeecCCEEEEEE-----CCEEEEEECCCC
Q 045962 378 NILASQSDLYVAAI-----DDKIITKIGPKM 403 (423)
Q Consensus 378 ~~~~~~~~~~~~~r-----~~~~lv~in~~~ 403 (423)
+....++.++++.| ++++.+++|.+.
T Consensus 432 ~~~~~~~~~~~~~r~~~~~~~~~~~~~n~~~ 462 (470)
T TIGR03852 432 DIETPSENQIEIVRTNKDGGNKAILTANLKT 462 (470)
T ss_pred EecCCCCcEEEEEEEcCCCCceEEEEEecCC
Confidence 87778889999987 356777778554
No 24
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=8.3e-45 Score=363.36 Aligned_cols=331 Identities=16% Similarity=0.176 Sum_probs=233.5
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhh-HHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIP-DIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH 101 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~-ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id 101 (423)
++|++-+|. |+.++ |||+|++++|| ||++| |++|||+|++ ++ .+.+++||+|.||+.||
T Consensus 3 n~~~litY~-Ds~~~--GdL~gl~~kLd~yL~~l-v~~vhllPff----------~p------sp~sD~GYdv~DY~~VD 62 (495)
T PRK13840 3 NKVQLITYA-DRLGD--GGLKSLTALLDGRLDGL-FGGVHILPFF----------YP------IDGADAGFDPIDHTKVD 62 (495)
T ss_pred CceEEEEec-cCCCC--CCHhHHHHHHHHHHHHH-hCeEEECCCc----------cC------CCCCCCCCCCcChhhcC
Confidence 589999999 98874 89999999999 59999 9999999999 43 12468999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCC-----------CCcccceeccCC-CC--CCCCCCCCCccccC
Q 045962 102 ASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKK-----------DRRGIWCIFEGG-TP--DKRLDWGPSFICRD 167 (423)
Q Consensus 102 ~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~-----------~~~~~~~~f~~~-~~--~~~~~~~~~~~~~~ 167 (423)
|+|||++||++|++ ||+||+|+|+||+|..|+ ++..+||.+.+. .+ ..+.+|...+....
T Consensus 63 -P~fGt~eDf~~L~~-----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~ 136 (495)
T PRK13840 63 -PRLGDWDDVKALGK-----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRP 136 (495)
T ss_pred -cccCCHHHHHHHHh-----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCC
Confidence 99999999999985 999999999999999884 233445554331 11 12334443332111
Q ss_pred C-----CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH-------------HH
Q 045962 168 D-----TTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-------------SI 229 (423)
Q Consensus 168 ~-----~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~-------------~~ 229 (423)
. +.+.++...+..+.+...|||||++||+|+++|.+++++|++ .||||||+||+.++.+ ++
T Consensus 137 g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~ 215 (495)
T PRK13840 137 GLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKAGTSCFMIPETFEF 215 (495)
T ss_pred CCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCCCCCcCCChHHHHH
Confidence 1 123445555556667899999999999999999999999997 8999999999987654 36
Q ss_pred HHHHHHhcC--CCeEEEeecCCCcccCCCccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhC----C----CCcc
Q 045962 230 TRLYMKNTM--PHFTVAEKWDSLSYRQDGKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAA----P----PGFI 299 (423)
Q Consensus 230 ~~~~~~~~~--p~~~~gE~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~----~----~~~~ 299 (423)
++++.+.++ ...+++|++....-+ ..+ .......|+|++...+..+ . ....
T Consensus 216 l~~lr~~~~~~~~~ll~Ei~~y~~~~-------------~~~------~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l 276 (495)
T PRK13840 216 IDRLAKEARARGMEVLVEIHSYYKTQ-------------IEI------AKKVDRVYDFALPPLILHTLFTGDVEALAHWL 276 (495)
T ss_pred HHHHHHHhhhcCCEEEEeCccccCcc-------------ccc------cccccEEecchhhHHHHHHHHhCCchHHHHHH
Confidence 666533222 355889987532100 000 1123445666655543332 0 0011
Q ss_pred CCCCCCceeccCCCCCCCC----------CCCCC--------------------------------------------CC
Q 045962 300 GLLPQNAVTFIDNHDTGST----------QRLWP--------------------------------------------FP 325 (423)
Q Consensus 300 ~~~~~~~~~f~~nHD~~r~----------~~~~~--------------------------------------------~~ 325 (423)
...|..+++|++|||.-.. ..+.. .+
T Consensus 277 ~~~p~~~~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~ 356 (495)
T PRK13840 277 EIRPRNAVTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRN 356 (495)
T ss_pred HhCCCccEEeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCC
Confidence 2247777899999998443 11000 01
Q ss_pred hhhHHHHHHHHHcCCCceEEecCCCCC-----------------------c---------hhHHHHHHHHHHHHhcCccc
Q 045962 326 SAKVMLGYAYILTHPGTPSIFYDHLFD-----------------------W---------DLKKEIGKLAAIRTKNGINT 373 (423)
Q Consensus 326 ~~~~~~a~a~~~~~pG~P~iy~G~~~~-----------------------w---------~~~~~~~~L~~lR~~~~~l~ 373 (423)
.++..+|.++++++||||.||||++.+ | .+++.+++|+++|+++|||
T Consensus 357 d~r~lla~ai~~~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF- 435 (495)
T PRK13840 357 DQDYLAARAIQFFAPGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAF- 435 (495)
T ss_pred cHHHHHHHHHHHcCCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-
Confidence 237889999999999999999998542 2 2788889999999999998
Q ss_pred ccceEEEeecCCEEEEEE---CCEEEEEEC
Q 045962 374 TSRVNILASQSDLYVAAI---DDKIITKIG 400 (423)
Q Consensus 374 ~g~~~~~~~~~~~~~~~r---~~~~lv~in 400 (423)
.|+++....++..+++.+ ..+..+.+|
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (495)
T PRK13840 436 DGAFSYAADGDTSLTLSWTAGDSSASLTLD 465 (495)
T ss_pred CceEEEecCCCCeEEEEEecCCceEEEEEE
Confidence 588888666666666665 234455555
No 25
>PLN02960 alpha-amylase
Probab=100.00 E-value=3.3e-43 Score=365.31 Aligned_cols=350 Identities=16% Similarity=0.187 Sum_probs=225.7
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhh-hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKR-IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH 101 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~-L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id 101 (423)
+|+++.+|.. ..+.|+|++++++ |+|||+||||+||||||+++ +. ..+|||++++||+|+
T Consensus 399 YElHvg~~~~---e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~--------~~--------~~swGY~~~~yfa~~ 459 (897)
T PLN02960 399 YECHVGISGS---EPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEH--------KD--------YSSVGYKVTNFFAVS 459 (897)
T ss_pred EEEecccccC---CCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccC--------CC--------CCCCCCCcccCCCcc
Confidence 4555665541 1235899999976 99999999999999999954 33 678999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 045962 102 ASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSG 181 (423)
Q Consensus 102 ~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (423)
++|||.++|++||++||++||+||||+|+||++.++.. + ...|++. + ..| +..+.... .
T Consensus 460 -~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~--~-L~~FDG~-~---~~Y-----------f~~~~~g~--~ 518 (897)
T PLN02960 460 -SRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMV--G-LSLFDGS-N---DCY-----------FHSGKRGH--H 518 (897)
T ss_pred -cccCCHHHHHHHHHHHHHCCCEEEEEecccccCCcccc--c-hhhcCCC-c---cce-----------eecCCCCc--c
Confidence 99999999999999999999999999999999986421 0 1112221 0 000 00000000 0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-------------------------HHHHHHH---
Q 045962 182 EPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------------------PSITRLY--- 233 (423)
Q Consensus 182 ~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~-------------------------~~~~~~~--- 233 (423)
..| +...||+.+++||++|++.+++|+++|||||||+|+++.|- ..|++++
T Consensus 519 ~~W-G~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~ 597 (897)
T PLN02960 519 KRW-GTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEM 597 (897)
T ss_pred CCC-CCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHH
Confidence 011 22458999999999999999999999999999999997631 1345554
Q ss_pred HHhcCC-CeEEEeecCCCc-----ccCCC-ccchhh-hHHHHHHHHHHHHhCCccccccchhhhHhhhCCCCccCCCCCC
Q 045962 234 MKNTMP-HFTVAEKWDSLS-----YRQDG-KLDARQ-DAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQN 305 (423)
Q Consensus 234 ~~~~~p-~~~~gE~~~~~~-----~~~~~-~~~y~~-~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~ 305 (423)
+++..| +++|||....-+ ..++| ..+|.. -+....+..++..... ...+.. .+...... ....+.+
T Consensus 598 v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~--r~~~~~---~l~~s~~~-~~~~~~~ 671 (897)
T PLN02960 598 LHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPD--QEWSMS---KIVSTLVK-NKENADK 671 (897)
T ss_pred HHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcC--CCCChh---ccEeeecc-CcCCcce
Confidence 445556 889999875421 11122 122221 1223344455544221 111110 11111110 1234567
Q ss_pred ceeccCCCCC--CCCCC----CCC--------CChh--------hHHHHHHHHHcCCCceEEecCCCC------------
Q 045962 306 AVTFIDNHDT--GSTQR----LWP--------FPSA--------KVMLGYAYILTHPGTPSIFYDHLF------------ 351 (423)
Q Consensus 306 ~~~f~~nHD~--~r~~~----~~~--------~~~~--------~~~~a~a~~~~~pG~P~iy~G~~~------------ 351 (423)
.+.|++|||+ ....+ +.. .... .+..+++++++ ||+||+|||+|+
T Consensus 672 ~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~-Pg~pLlFMG~EFGh~e~~~~PdP~ 750 (897)
T PLN02960 672 MLSYAENHNQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLG-GSAYLNFMGNEFGHPERVEFPRAS 750 (897)
T ss_pred EEEEecCcCccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhC-CCCCEeeCccccCChhhhhCcCCC
Confidence 7999999999 11111 000 0100 11123555554 899999999864
Q ss_pred ----------Cch---------hHHHHHHHHHHHHhcCcccccceEEE--eecCCEEEEEECCEEEEEECCCCC-----c
Q 045962 352 ----------DWD---------LKKEIGKLAAIRTKNGINTTSRVNIL--ASQSDLYVAAIDDKIITKIGPKMD-----L 405 (423)
Q Consensus 352 ----------~w~---------~~~~~~~L~~lR~~~~~l~~g~~~~~--~~~~~~~~~~r~~~~lv~in~~~~-----~ 405 (423)
+|+ +.++++.|++||+++|+|..|..... ..++.|++|.|+ .+|||+|.+.. .
T Consensus 751 n~~tf~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~-~llvV~NFsp~~~~~~Y 829 (897)
T PLN02960 751 NNFSFSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRG-PLLFAFNFHPTNSYEEY 829 (897)
T ss_pred CccccccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeC-CeEEEEeCCCCCcCcCc
Confidence 242 78899999999999999987654443 334579999995 68899996532 1
Q ss_pred CccCC--cCeEEeeccCC
Q 045962 406 RNLIP--RNFKVATSGKD 421 (423)
Q Consensus 406 ~~~~~--~~~~~~~~g~~ 421 (423)
++.+| +.|+.+++++.
T Consensus 830 ~vgvP~~G~y~eilNSD~ 847 (897)
T PLN02960 830 EVGVEEAGEYELILNTDE 847 (897)
T ss_pred eECCCCCCcEEEEEeCch
Confidence 12234 58999998764
No 26
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=7.6e-42 Score=355.47 Aligned_cols=336 Identities=17% Similarity=0.213 Sum_probs=224.3
Q ss_pred CCcHHHHHh-hhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHH
Q 045962 39 GGWYNFLKK-RIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQA 117 (423)
Q Consensus 39 ~G~~~~~~~-~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~ 117 (423)
.|+++++++ +|+|||+||||+||||||+++ .. ..+|||++.|||+++ ++|||.++||+||++
T Consensus 246 ~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~--------~~--------~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd~ 308 (758)
T PLN02447 246 VNSYREFADDVLPRIKALGYNAVQLMAIQEH--------AY--------YGSFGYHVTNFFAVS-SRSGTPEDLKYLIDK 308 (758)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCcccc--------CC--------CCCCCcCcccCcccc-cccCCHHHHHHHHHH
Confidence 589999754 599999999999999999954 22 578999999999999 999999999999999
Q ss_pred HHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 045962 118 FNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRV 197 (423)
Q Consensus 118 aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v 197 (423)
||++||+||||+|+||++.++. .+ ...|++. + ..|. ..+.... ...+ +...+|+++++|
T Consensus 309 aH~~GI~VilDvV~nH~~~~~~--~g-l~~fDg~-~---~~Yf-----------~~~~~g~--~~~w-~~~~~N~~~~eV 367 (758)
T PLN02447 309 AHSLGLRVLMDVVHSHASKNTL--DG-LNGFDGT-D---GSYF-----------HSGPRGY--HWLW-DSRLFNYGNWEV 367 (758)
T ss_pred HHHCCCEEEEEecccccccccc--cc-ccccCCC-C---cccc-----------ccCCCCC--cCcC-CCceecCCCHHH
Confidence 9999999999999999997642 11 1122210 0 0111 0000000 0111 223599999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecccCCCC--------------------------HHHHHHH---HHhcCC-CeEEEeec
Q 045962 198 QKELSDWMNWLKTEIGFDGWRFDFVKGYA--------------------------PSITRLY---MKNTMP-HFTVAEKW 247 (423)
Q Consensus 198 ~~~~~~~l~~w~~~~gvDGfR~D~a~~~~--------------------------~~~~~~~---~~~~~p-~~~~gE~~ 247 (423)
+++|++++++|+++|||||||+|+++++- ..|++.+ +++..| +++|||.+
T Consensus 368 r~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~ 447 (758)
T PLN02447 368 LRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDV 447 (758)
T ss_pred HHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999872 1244444 556667 88999987
Q ss_pred CCCc-----ccCC---CccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhCCCCccCCCCCCceeccCCCCCCCC-
Q 045962 248 DSLS-----YRQD---GKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGST- 318 (423)
Q Consensus 248 ~~~~-----~~~~---~~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~~f~~nHD~~r~- 318 (423)
+.-+ ...+ .+..|+. +.......|+..... ...+. ..+..... ...+..+.+.|.+|||+...
T Consensus 448 s~~p~l~~p~~~GGlGFDykw~M-g~~~~~l~~l~~~~d--~~~~~--~~l~~sl~---~r~~~E~~I~y~eSHDevv~G 519 (758)
T PLN02447 448 SGMPTLCRPVQEGGVGFDYRLAM-AIPDKWIELLKEKRD--EDWSM--GDIVHTLT---NRRYTEKCVAYAESHDQALVG 519 (758)
T ss_pred CCCCCccccCCCCcCCcceEECC-ccchHHHHHHhhCCC--cccCH--HHHHHHHh---cccccCceEeccCCcCeeecC
Confidence 6522 1112 2333331 223334455554331 11111 11111110 11234567889999999543
Q ss_pred -CCC----C------CCC---h-----hh----HHHHHHHHHcCCCc-eEEecCCCCC----------------------
Q 045962 319 -QRL----W------PFP---S-----AK----VMLGYAYILTHPGT-PSIFYDHLFD---------------------- 352 (423)
Q Consensus 319 -~~~----~------~~~---~-----~~----~~~a~a~~~~~pG~-P~iy~G~~~~---------------------- 352 (423)
.++ . ... . .| .++..++++++||. +++|+|.|++
T Consensus 520 kksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~ 599 (758)
T PLN02447 520 DKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKCRRR 599 (758)
T ss_pred cchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcccccccCcccccCC
Confidence 111 1 010 0 11 24456789999999 7999998653
Q ss_pred ch-----------hHHHHHHHHHHHHhcCcccccceEEE--eecCCEEEEEECCEEEEEECCCC-----C--cCccCCcC
Q 045962 353 WD-----------LKKEIGKLAAIRTKNGINTTSRVNIL--ASQSDLYVAAIDDKIITKIGPKM-----D--LRNLIPRN 412 (423)
Q Consensus 353 w~-----------~~~~~~~L~~lR~~~~~l~~g~~~~~--~~~~~~~~~~r~~~~lv~in~~~-----~--~~~~~~~~ 412 (423)
|+ +.++.+.|++|++++|+|..|..... ..++.|++|.|+ .+|+|+|-.. + ++.+.++.
T Consensus 600 W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~-~ll~V~NF~p~~s~~~Y~igvp~~G~ 678 (758)
T PLN02447 600 WDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERG-DLVFVFNFHPTNSYSDYRVGCDKPGK 678 (758)
T ss_pred ccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeC-CeEEEEeCCCCCCCCCcEECCCCCCe
Confidence 32 66799999999999999976543222 345689999997 4888888432 2 33345569
Q ss_pred eEEeeccCC
Q 045962 413 FKVATSGKD 421 (423)
Q Consensus 413 ~~~~~~g~~ 421 (423)
|+.+++++.
T Consensus 679 y~~ilnSD~ 687 (758)
T PLN02447 679 YKIVLDSDA 687 (758)
T ss_pred EEEEECCCc
Confidence 999999874
No 27
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-41 Score=345.75 Aligned_cols=359 Identities=21% Similarity=0.321 Sum_probs=229.5
Q ss_pred CceeeeeeecccCC------CCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccc
Q 045962 23 PTILFQGFNWESCN------KKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGR 96 (423)
Q Consensus 23 ~~v~~~~F~~d~~~------~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d 96 (423)
++++..+|. ++++ +++|||+||+++|||||+|||++|||+||+ ++ ...+|||++.|
T Consensus 4 yqi~~~~f~-d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~----------~s-------~~~~~gY~~~D 65 (505)
T COG0366 4 YQIYPDRFA-DSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIF----------ES-------PQADHGYDVSD 65 (505)
T ss_pred EEEechhhc-CCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCC----------CC-------CccCCCccccc
Confidence 456666777 7776 667999999999999999999999999999 66 47999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCC-------C---Cc-ccceeccCCCC--CCCCCCCCCc
Q 045962 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKK-------D---RR-GIWCIFEGGTP--DKRLDWGPSF 163 (423)
Q Consensus 97 ~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~-------~---~~-~~~~~f~~~~~--~~~~~~~~~~ 163 (423)
|+.|| |.|||+++|++||++||++||+||+|+|+||++.+|+ . +. ..|+.|....+ ..+.+|...+
T Consensus 66 y~~id-~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 144 (505)
T COG0366 66 YTKVD-PHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVF 144 (505)
T ss_pred hhhcC-cccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhc
Confidence 99999 9999999999999999999999999999999999984 1 11 24554443211 1223332222
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH-----------HHHHH
Q 045962 164 ICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------SITRL 232 (423)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~-----------~~~~~ 232 (423)
.. ..+.+ .....+....+...+||||+.||+|++++.+.+++|++ .||||||+|+++++++ .++..
T Consensus 145 ~~-~~~~~-~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~ 221 (505)
T COG0366 145 GG-DAWTW-GNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDFGLPPSEENLTFLEE 221 (505)
T ss_pred CC-CCCCc-CCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhccccCCCCcccccccHHH
Confidence 11 11111 23445566677899999999999999999999999998 9999999999999998 44554
Q ss_pred H---HHhcCC-CeEEEeecCCCcccCCCccchhh---hHHHHHHHHHHHHhCCccc-----cccc-hhhhHhhhCCCCcc
Q 045962 233 Y---MKNTMP-HFTVAEKWDSLSYRQDGKLDARQ---DAHRRNLKYWVQAAGRAVT-----AFDF-TTKGILQAAPPGFI 299 (423)
Q Consensus 233 ~---~~~~~p-~~~~gE~~~~~~~~~~~~~~y~~---~~~~~~~~~~~~~~~~~~~-----~~df-~~~~~l~~~~~~~~ 299 (423)
+ +++..+ .+..+|.+............+.. ......+...+........ ..++ .+...+........
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (505)
T COG0366 222 IHEYLREENPDVLIYGEAITDVGEAPGAVKEDFADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVN 301 (505)
T ss_pred HHHHHHHHHHHHHhcCcceeeeeccccccchhhhhccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhc
Confidence 4 233322 22222332211000000000000 0001111111110000000 0000 11111111111111
Q ss_pred CCCCCCceeccCCCCCCCCCCCCCCCh----hhHHHHHHHHHcCCCceEEecCCCC------------------------
Q 045962 300 GLLPQNAVTFIDNHDTGSTQRLWPFPS----AKVMLGYAYILTHPGTPSIFYDHLF------------------------ 351 (423)
Q Consensus 300 ~~~~~~~~~f~~nHD~~r~~~~~~~~~----~~~~~a~a~~~~~pG~P~iy~G~~~------------------------ 351 (423)
........|..|||++|..+...... ...+++.++++++||+|+||||+|.
T Consensus 302 -~~~~~~~~~~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (505)
T COG0366 302 -LNDGWNNLFLSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILL 380 (505)
T ss_pred -cccCchhhhhhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhc
Confidence 01112234899999999877664433 5677888888899999999999731
Q ss_pred ---------Cc--------------------------------------hhHHHHHHHHHHHHhcC-cccccc-eEEEee
Q 045962 352 ---------DW--------------------------------------DLKKEIGKLAAIRTKNG-INTTSR-VNILAS 382 (423)
Q Consensus 352 ---------~w--------------------------------------~~~~~~~~L~~lR~~~~-~l~~g~-~~~~~~ 382 (423)
.| .++.++++|+++|+.+. .+..|. +..+..
T Consensus 381 ~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~~~ 460 (505)
T COG0366 381 SRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLLAD 460 (505)
T ss_pred cccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceecCC
Confidence 12 16788999999999984 446663 333333
Q ss_pred -cCCEEEEEEC---CEEEEEECCCCC
Q 045962 383 -QSDLYVAAID---DKIITKIGPKMD 404 (423)
Q Consensus 383 -~~~~~~~~r~---~~~lv~in~~~~ 404 (423)
+..++++.|. +.++|++|.+..
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~n~~~~ 486 (505)
T COG0366 461 DDPSLLAFLRESGGETLLVVNNLSEE 486 (505)
T ss_pred CCceEEEEecccCCceEEEEEcCCCc
Confidence 3378999983 346777776543
No 28
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=1.3e-40 Score=352.73 Aligned_cols=374 Identities=17% Similarity=0.219 Sum_probs=234.2
Q ss_pred Cceeeeeeecc-cCC--CCCCcHHHHHhh-------hhHHHHcCCcEEEcCCccccCC--CCccccccc-----------
Q 045962 23 PTILFQGFNWE-SCN--KKGGWYNFLKKR-------IPDIASAGITHVWLSSTFSLCC--SPRLFFHSI----------- 79 (423)
Q Consensus 23 ~~v~~~~F~~d-~~~--~~~G~~~~~~~~-------L~ylk~lGi~~I~l~Pi~~~~~--~~~~~~~~~----------- 79 (423)
+|+++++|+.. +.. ...|+|.+++++ |.|||+||||+|+|||++++.. +...-+..+
T Consensus 256 YElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~ 335 (898)
T TIGR02103 256 YELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELN 335 (898)
T ss_pred EEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhccc
Confidence 78999999852 222 357999999886 6677788999999999998842 111000000
Q ss_pred ---------------------------ccc------ccCCCCCCCCcccccCCCCCCCCCC-------HHHHHHHHHHHH
Q 045962 80 ---------------------------IHQ------AYSHASLAGYMPGRLYDLHASSYGS-------QNELKSLIQAFN 119 (423)
Q Consensus 80 ---------------------------~~~------~~~~~~~~GY~~~d~~~id~~~~Gt-------~~~l~~lv~~aH 119 (423)
..+ ......+|||+|..|+.++ ..|++ .+|||+||++||
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPe-gSYatdp~g~~Ri~Efk~mV~alH 414 (898)
T TIGR02103 336 PDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPE-GSYATDPEGPARIKEFREMVQALN 414 (898)
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcC-hhhccCCCCchHHHHHHHHHHHHH
Confidence 000 0012358999999999999 99987 479999999999
Q ss_pred HcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 045962 120 KKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQK 199 (423)
Q Consensus 120 ~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~ 199 (423)
++||+||||+|+||++..++.... .++.-. +.|. +... .++.....+++ .+++.++|+|++
T Consensus 415 ~~Gi~VIlDVVyNHt~~~g~~~~s---~ld~~~----P~YY---~r~~----~~G~~~n~~~~-----~d~a~e~~~Vrk 475 (898)
T TIGR02103 415 KTGLNVVMDVVYNHTNASGPNDRS---VLDKIV----PGYY---HRLN----EDGGVENSTCC-----SNTATEHRMMAK 475 (898)
T ss_pred HCCCEEEEEeecccccccCccCcc---cccccC----cHhh---EeeC----CCCCeecCCCC-----cCCCCCCHHHHH
Confidence 999999999999999976532110 011100 0110 0000 01111111111 357999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CeEEEeecCCCcc------cC-------CCccchhh
Q 045962 200 ELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLY---MKNTMP-HFTVAEKWDSLSY------RQ-------DGKLDARQ 262 (423)
Q Consensus 200 ~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~~gE~~~~~~~------~~-------~~~~~y~~ 262 (423)
+|++++++|+++|||||||+|+++++++++|+++ +++++| ++++||.|+.... .+ +......+
T Consensus 476 ~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~Fn 555 (898)
T TIGR02103 476 LIVDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFS 555 (898)
T ss_pred HHHHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEec
Confidence 9999999999999999999999999999999998 556677 8899999974221 11 00111222
Q ss_pred hHHHHHHHH--HHHH------hCC-ccccccchh----------------hhHhhhCCC-------------------C-
Q 045962 263 DAHRRNLKY--WVQA------AGR-AVTAFDFTT----------------KGILQAAPP-------------------G- 297 (423)
Q Consensus 263 ~~~~~~~~~--~~~~------~~~-~~~~~df~~----------------~~~l~~~~~-------------------~- 297 (423)
+.++++++. -++. ..+ ....+..+. ...++.... .
T Consensus 556 D~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~ 635 (898)
T TIGR02103 556 DRLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEEL 635 (898)
T ss_pred cchhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCcccccccccccccccccccc
Confidence 566666642 0110 000 000000000 000000000 0
Q ss_pred -------ccCCCCCCceeccCCCCCCCCCCC----C--CCC----hhhHHHHHHHHHcCCCceEEecCCCC---------
Q 045962 298 -------FIGLLPQNAVTFIDNHDTGSTQRL----W--PFP----SAKVMLGYAYILTHPGTPSIFYDHLF--------- 351 (423)
Q Consensus 298 -------~~~~~~~~~~~f~~nHD~~r~~~~----~--~~~----~~~~~~a~a~~~~~pG~P~iy~G~~~--------- 351 (423)
-....|...++|+++||+...--. . ... .++.++|.+++++.+|+|+|.+|+|+
T Consensus 636 ~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~n 715 (898)
T TIGR02103 636 DYNGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRD 715 (898)
T ss_pred ccCcCccccccCHHHheeeeeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCC
Confidence 011356778999999999642110 0 111 12346899999999999999999864
Q ss_pred -----------Cc-----------------------------------------hhHHHHHHHHHHHHhcCcccccc---
Q 045962 352 -----------DW-----------------------------------------DLKKEIGKLAAIRTKNGINTTSR--- 376 (423)
Q Consensus 352 -----------~w-----------------------------------------~~~~~~~~L~~lR~~~~~l~~g~--- 376 (423)
+| ...++++.||+||+++|.|+.+.
T Consensus 716 SY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~ 795 (898)
T TIGR02103 716 SYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAE 795 (898)
T ss_pred CCcCchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHH
Confidence 12 16889999999999999997664
Q ss_pred ----eEEEeec----CCEEEEEEC--------------CEEEEEECCCCCcCccCCc----CeEEe
Q 045962 377 ----VNILASQ----SDLYVAAID--------------DKIITKIGPKMDLRNLIPR----NFKVA 416 (423)
Q Consensus 377 ----~~~~~~~----~~~~~~~r~--------------~~~lv~in~~~~~~~~~~~----~~~~~ 416 (423)
++..... ++++++..+ +.++|++|.+......+|. .|++.
T Consensus 796 I~~~v~F~~~g~~~~~g~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~~~~~~~~~~~~~~~~l~ 861 (898)
T TIGR02103 796 VMKRVDFRNTGPDQIPGLIVMSIDDGGIQAGASLDPRYDGIVVIFNARPEEVTLSPDFAGTGLELH 861 (898)
T ss_pred HHhheEEeccCCcCCCCEEEEEEcCCccccccccccccCeEEEEEcCCCccEEEecccCCCcEEEE
Confidence 3333332 689999862 2488999965332221332 46665
No 29
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=330.25 Aligned_cols=343 Identities=17% Similarity=0.201 Sum_probs=219.3
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
+||++=+|++| ..-|+++.++++|+|||+||||+|+||||.|| +. ..+|||+++.||++.
T Consensus 148 YElHvGs~~~~---~~~~~~e~a~~llpYl~elG~T~IELMPv~e~--------p~--------~~sWGYq~~g~yAp~- 207 (628)
T COG0296 148 YELHVGSFTPD---RFLGYFELAIELLPYLKELGITHIELMPVAEH--------PG--------DRSWGYQGTGYYAPT- 207 (628)
T ss_pred EEEEeeeccCC---CCcCHHHHHHHHhHHHHHhCCCEEEEcccccC--------CC--------CCCCCCCcceecccc-
Confidence 68888899863 23489999999999999999999999999976 55 899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGE 182 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (423)
++|||.|+||+||++||++||.||||+|+||.+.+.. ....|++..-+...+..... ...|.
T Consensus 208 sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~~----~L~~fdg~~~~e~~~~~~~~----~~~Wg---------- 269 (628)
T COG0296 208 SRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDGN----YLARFDGTFLYEHEDPRRGE----HTDWG---------- 269 (628)
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCcc----hhhhcCCccccccCCccccc----CCCcc----------
Confidence 9999999999999999999999999999999997541 01123321111111110000 01111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH------------------------HHHHHH---HH
Q 045962 183 PFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP------------------------SITRLY---MK 235 (423)
Q Consensus 183 ~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~------------------------~~~~~~---~~ 235 (423)
.. -.|...++||+++++.+.+|+++|+|||+|+||+..|.- +|.++. +.
T Consensus 270 ---~~-i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~ 345 (628)
T COG0296 270 ---TA-IFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIH 345 (628)
T ss_pred ---cc-hhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhc
Confidence 11 145558999999999999999999999999999998831 233332 22
Q ss_pred hcCC-CeEEEeecCCCcccC-----CC-ccch--hhhHHHHHHHHHHHHhCCccccccchhhhHhhhCCCCccC----CC
Q 045962 236 NTMP-HFTVAEKWDSLSYRQ-----DG-KLDA--RQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIG----LL 302 (423)
Q Consensus 236 ~~~p-~~~~gE~~~~~~~~~-----~~-~~~y--~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~----~~ 302 (423)
...| .+.|+|.|++.+... +| ...| +..... +.-.|+.. ...+ .....+... ..
T Consensus 346 ~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~-D~~~y~~~----~~~~--------r~~~h~~~tf~~~y~ 412 (628)
T COG0296 346 EEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMH-DTLFYFGK----DPVY--------RKYHHGELTFGLLYA 412 (628)
T ss_pred ccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHh-hHHHhccc----Cccc--------cccccCCCccccccc
Confidence 2334 678999997743211 11 1111 111111 11122111 0001 011111111 23
Q ss_pred CCCceeccCCCCCC--CCCCC-------CCCChhhHHHHHHHHHcCCCceEEecCCCCC------------ch-------
Q 045962 303 PQNAVTFIDNHDTG--STQRL-------WPFPSAKVMLGYAYILTHPGTPSIFYDHLFD------------WD------- 354 (423)
Q Consensus 303 ~~~~~~f~~nHD~~--r~~~~-------~~~~~~~~~~a~a~~~~~pG~P~iy~G~~~~------------w~------- 354 (423)
++..+.++.|||+- -..++ .-...+.++.++++|++.||+|++++|+|++ |.
T Consensus 413 ~se~~~l~~sHDevvhGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~ 492 (628)
T COG0296 413 FSENVVLPLSHDEVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVR 492 (628)
T ss_pred cceeEeccccccceeecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhhhhhccc
Confidence 46678999999994 22221 1123457889999999999999999999863 31
Q ss_pred ------hHHHHHHHHHHHHhcCcccc-----cceEEEeec---CCEEEEEE-----CCEEEEEECCCCC-------cCcc
Q 045962 355 ------LKKEIGKLAAIRTKNGINTT-----SRVNILASQ---SDLYVAAI-----DDKIITKIGPKMD-------LRNL 408 (423)
Q Consensus 355 ------~~~~~~~L~~lR~~~~~l~~-----g~~~~~~~~---~~~~~~~r-----~~~~lv~in~~~~-------~~~~ 408 (423)
+.++.+.|.++-+..+.+.. ..++++..+ +.+++|.| +++.+|++|+..+ ++..
T Consensus 493 ~g~~~~~~~~~~~ln~~y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~~~~~~y~~~~~ 572 (628)
T COG0296 493 EGRHKEFRRLVRDLNALYRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTPVPRVDYRVGVP 572 (628)
T ss_pred cchHHHHHHHHHhhHHhhccCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCCCcccccccCCc
Confidence 33334444445556566533 345666543 36888877 4565666665433 2222
Q ss_pred CCcCeEEeeccC
Q 045962 409 IPRNFKVATSGK 420 (423)
Q Consensus 409 ~~~~~~~~~~g~ 420 (423)
+.+.|+.+++++
T Consensus 573 ~~g~~~~~lntd 584 (628)
T COG0296 573 VAGRWREVLNTD 584 (628)
T ss_pred ccccEEEeccch
Confidence 333799988764
No 30
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=4e-39 Score=340.60 Aligned_cols=370 Identities=18% Similarity=0.216 Sum_probs=228.3
Q ss_pred CceeeeeeecccC---CCCCCcHHHHHhh-------hhHHHHcCCcEEEcCCccccCCCC--cccccccc----------
Q 045962 23 PTILFQGFNWESC---NKKGGWYNFLKKR-------IPDIASAGITHVWLSSTFSLCCSP--RLFFHSII---------- 80 (423)
Q Consensus 23 ~~v~~~~F~~d~~---~~~~G~~~~~~~~-------L~ylk~lGi~~I~l~Pi~~~~~~~--~~~~~~~~---------- 80 (423)
+|+++++|+-... .+..|+|.+++++ |+|||+||||+|+|||+++|...+ ...+....
T Consensus 343 YElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~ 422 (970)
T PLN02877 343 YELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPD 422 (970)
T ss_pred EEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhcccccc
Confidence 6889999995222 1357999998876 667777799999999999873211 10000000
Q ss_pred ---cc------ccCCCCCCCCcccccCCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCccc
Q 045962 81 ---HQ------AYSHASLAGYMPGRLYDLHASSYGS-------QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGI 144 (423)
Q Consensus 81 ---~~------~~~~~~~~GY~~~d~~~id~~~~Gt-------~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~ 144 (423)
.+ ......+|||+|..|+.++ .+|++ ..|||+||++||++||+||||+|+||++..++.. .
T Consensus 423 s~~~q~~v~~~~~~d~yNWGYDP~~YfaPE-gSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~--~ 499 (970)
T PLN02877 423 SEEQQAAITAIQDDDGYNWGYNPVLWGVPK-GSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFD--E 499 (970)
T ss_pred chhhhhcccccccCCCCCCCCCccccCCCC-cccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcc--h
Confidence 00 0012478999999999999 99998 4689999999999999999999999998643210 0
Q ss_pred ceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 045962 145 WCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 224 (423)
Q Consensus 145 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~ 224 (423)
-..+++-.| .|. ...+ .+|......++ -+.+.+++.||++|++.+++|+++|||||||+|.+.+
T Consensus 500 ~s~ld~~vP----~YY---~r~~----~~G~~~ns~c~-----n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~ 563 (970)
T PLN02877 500 NSVLDKIVP----GYY---LRRN----SDGFIENSTCV-----NNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGH 563 (970)
T ss_pred hhcccCCCC----Cce---EEEC----CCCCcccCCcc-----CCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEcccc
Confidence 001111000 110 0000 01111111111 1357899999999999999999999999999999999
Q ss_pred CCHHHHHHH---HHhcC--------C-CeEEEeecCCCcccC-------------CCccchhhhHHHHHHHH---HHH-H
Q 045962 225 YAPSITRLY---MKNTM--------P-HFTVAEKWDSLSYRQ-------------DGKLDARQDAHRRNLKY---WVQ-A 275 (423)
Q Consensus 225 ~~~~~~~~~---~~~~~--------p-~~~~gE~~~~~~~~~-------------~~~~~y~~~~~~~~~~~---~~~-~ 275 (423)
++++.|.++ ++++. | ++++||.|+...... +......++.++++++. |-. .
T Consensus 564 i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~ 643 (970)
T PLN02877 564 LMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPL 643 (970)
T ss_pred ccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcC
Confidence 999976665 55552 4 789999997532100 00112223666666642 100 0
Q ss_pred hCCc-ccccc------c----h----h---hhHhhhC----C---------------------CC---ccCCCCCCceec
Q 045962 276 AGRA-VTAFD------F----T----T---KGILQAA----P---------------------PG---FIGLLPQNAVTF 309 (423)
Q Consensus 276 ~~~~-~~~~d------f----~----~---~~~l~~~----~---------------------~~---~~~~~~~~~~~f 309 (423)
..+- ...+. . . + ...++.. . .+ -....|...++|
T Consensus 644 ~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InY 723 (970)
T PLN02877 644 QQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINY 723 (970)
T ss_pred CCceecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheee
Confidence 0000 00000 0 0 0 0000000 0 00 011346778999
Q ss_pred cCCCCCCCCCCC----CC--C----ChhhHHHHHHHHHcCCCceEEecCCCC--------------------Cch-----
Q 045962 310 IDNHDTGSTQRL----WP--F----PSAKVMLGYAYILTHPGTPSIFYDHLF--------------------DWD----- 354 (423)
Q Consensus 310 ~~nHD~~r~~~~----~~--~----~~~~~~~a~a~~~~~pG~P~iy~G~~~--------------------~w~----- 354 (423)
+++||+...--. .. . ..++.++|.+++++.+|||+|..|+|+ +|.
T Consensus 724 vs~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn 803 (970)
T PLN02877 724 VSAHDNETLFDIISLKTPMEISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNN 803 (970)
T ss_pred eeccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCc
Confidence 999999642110 00 0 113456899999999999999999864 221
Q ss_pred ------------------------------------hHHHHHHHHHHHHhcCcccccc-------eEEEee----cCCEE
Q 045962 355 ------------------------------------LKKEIGKLAAIRTKNGINTTSR-------VNILAS----QSDLY 387 (423)
Q Consensus 355 ------------------------------------~~~~~~~L~~lR~~~~~l~~g~-------~~~~~~----~~~~~ 387 (423)
..++++.||+||+++|+|+.+. ++.+.. .++++
T Consensus 804 ~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~~~~~gvi 883 (970)
T PLN02877 804 WGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGPSSIPGVI 883 (970)
T ss_pred cccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCCCcCCCEE
Confidence 3778899999999999998664 333333 24899
Q ss_pred EEEEC----------------CEEEEEECCC-CCcCccCCc
Q 045962 388 VAAID----------------DKIITKIGPK-MDLRNLIPR 411 (423)
Q Consensus 388 ~~~r~----------------~~~lv~in~~-~~~~~~~~~ 411 (423)
++..+ +.++|++|.+ ..+...+|.
T Consensus 884 ~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~~~~~~~~~ 924 (970)
T PLN02877 884 VMSIEDGHEGVPGLSQLDPIYSRIVVIFNARPTEVSFESPA 924 (970)
T ss_pred EEEEcCCCCccccccccccccCcEEEEEcCCCccEEEeccc
Confidence 99852 2488999954 334444554
No 31
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-39 Score=330.26 Aligned_cols=356 Identities=26% Similarity=0.381 Sum_probs=245.9
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
++++.++|. ++++++.|+++|+++||||||++||++|||+||+ ++ ...++||++.||+.|+
T Consensus 21 YQI~~~sF~-~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~----------~s-------~~~~~GY~~~d~~~l~- 81 (545)
T KOG0471|consen 21 YQIYPDSFA-DSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFT----------KS-------SKPDFGYDASDLEQLR- 81 (545)
T ss_pred eEEeccccc-cccCCCccccccchhhhhHHHhcCCceEEeCCCc----------CC-------CHHHhccCccchhhhc-
Confidence 789999999 7788888999999999999999999999999999 66 4668999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCC------CC-c--ccceeccCCC------CCCCCCCCCCccccC
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKK------DR-R--GIWCIFEGGT------PDKRLDWGPSFICRD 167 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~------~~-~--~~~~~f~~~~------~~~~~~~~~~~~~~~ 167 (423)
|+|||+|+|++||+++|++||++|+|+|+||++..|+ .. . ..++.+.++. ..+|.+|.+.+. ..
T Consensus 82 p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~-~s 160 (545)
T KOG0471|consen 82 PRFGTEEDFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFG-GS 160 (545)
T ss_pred ccccHHHHHHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhc-cc
Confidence 9999999999999999999999999999999996653 11 1 1244444322 233567766543 23
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEEee
Q 045962 168 DTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEK 246 (423)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~-~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~~gE~ 246 (423)
.+.|.+++.++..+.+...+||+|++||+|++.+.++++ +|.+ +||||||+|+++++..+++. ..-.-.|.+-.||.
T Consensus 161 ~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~ 238 (545)
T KOG0471|consen 161 AWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEK 238 (545)
T ss_pred cCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEccccccccccc-ccccCCCcccceeE
Confidence 455566778888888889999999999999999999999 6765 99999999999999999888 44445568889998
Q ss_pred cCCCcccCCCccchhhh--HHHHHHHHHHHHhCCccccccchhhhHhh---------------hCC--------------
Q 045962 247 WDSLSYRQDGKLDARQD--AHRRNLKYWVQAAGRAVTAFDFTTKGILQ---------------AAP-------------- 295 (423)
Q Consensus 247 ~~~~~~~~~~~~~y~~~--~~~~~~~~~~~~~~~~~~~~df~~~~~l~---------------~~~-------------- 295 (423)
+.+.++.......|..+ .....+..+..........+.+.....+. ...
T Consensus 239 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~l 318 (545)
T KOG0471|consen 239 LQDDNYVAYQYNDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTL 318 (545)
T ss_pred ecCcchhhcccccccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhh
Confidence 86644321111111100 00000000000000000111110000000 000
Q ss_pred ---------------CCccCCCC---CCceeccCCCCCCCCCCCCCCChhhHHHHHHHHHcCCCceEEecCCCC------
Q 045962 296 ---------------PGFIGLLP---QNAVTFIDNHDTGSTQRLWPFPSAKVMLGYAYILTHPGTPSIFYDHLF------ 351 (423)
Q Consensus 296 ---------------~~~~~~~~---~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~~~~pG~P~iy~G~~~------ 351 (423)
..+....+ ..+...+.|||..|..++.+ ....++..++++++||+|.+|+|+|+
T Consensus 319 t~~~~~~~~~~~~~~~~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~--~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~ 396 (545)
T KOG0471|consen 319 SDLGLTVASIYKEVEVDWLSNHDTENRWAHWVLGNHDQARLASRFG--SDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVA 396 (545)
T ss_pred hhhhccchHHHHHHHHHHHhcCCccCCceeeeecCccchhhHHHhc--chhHHHHhHHhcccCCCceEEEeEEeecccee
Confidence 00000000 11234555666666555433 33466777999999999999999742
Q ss_pred ------------------Cc-----------------------------------hhHHHHHHHHHHHHhcCcccccceE
Q 045962 352 ------------------DW-----------------------------------DLKKEIGKLAAIRTKNGINTTSRVN 378 (423)
Q Consensus 352 ------------------~w-----------------------------------~~~~~~~~L~~lR~~~~~l~~g~~~ 378 (423)
.| .+...++++..+|+....+..|...
T Consensus 397 ~~~~~~~~~~~~~~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~ 476 (545)
T KOG0471|consen 397 ISGEDGEDPKLMQSRTPMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFV 476 (545)
T ss_pred eccCCCcCcHHhccCCccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhccccccccee
Confidence 23 1788999999999998777888888
Q ss_pred EEeecCCEEEEEE----CCEEEEEECCC
Q 045962 379 ILASQSDLYVAAI----DDKIITKIGPK 402 (423)
Q Consensus 379 ~~~~~~~~~~~~r----~~~~lv~in~~ 402 (423)
....++.++++.| ....++++|..
T Consensus 477 ~~~~~~~if~~~r~~~~~~~~~~~~~~~ 504 (545)
T KOG0471|consen 477 LFAATPGLFSFSRNWDGNERFIAVLNFG 504 (545)
T ss_pred eecCCCceEEEEeccCCCceEEEEEecC
Confidence 8888899999998 24455555543
No 32
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=335.58 Aligned_cols=364 Identities=21% Similarity=0.280 Sum_probs=239.9
Q ss_pred CceeeeeeecccCC---CCCCcHHHHHhh--hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCccccc
Q 045962 23 PTILFQGFNWESCN---KKGGWYNFLKKR--IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRL 97 (423)
Q Consensus 23 ~~v~~~~F~~d~~~---~~~G~~~~~~~~--L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~ 97 (423)
+|+++++|+--+.+ ...|||.++++. |+|||+|||++|+||||+.+..++.....+ -..+|||+|..|
T Consensus 175 YE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~g-------l~n~WGYdP~~f 247 (697)
T COG1523 175 YEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSG-------LNNNWGYDPLNF 247 (697)
T ss_pred EEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccc-------cccccCCCcccc
Confidence 68889999832222 348999999999 999999999999999999875544432122 368999999999
Q ss_pred CCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccC-CC
Q 045962 98 YDLHASSYGS-------QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRD-DT 169 (423)
Q Consensus 98 ~~id~~~~Gt-------~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~ 169 (423)
|+++ ++|-+ ..|||.||+++|++||+||||||+||++... ..+.-..|++=.+. .++..+ +.
T Consensus 248 FAp~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~--~~g~t~~f~~id~~-------~Yyr~~~dg 317 (697)
T COG1523 248 FAPE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGN--ELGPTLSFRGIDPN-------YYYRLDPDG 317 (697)
T ss_pred cCCC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCccccc--CcCcccccccCCcC-------ceEEECCCC
Confidence 9999 98864 4699999999999999999999999998532 12222223331110 001110 01
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHH-HH----HHHh--cCC-
Q 045962 170 TYS--DGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT-RL----YMKN--TMP- 239 (423)
Q Consensus 170 ~~~--~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~-~~----~~~~--~~p- 239 (423)
.|. .||+|. +|.++|.||+.|+|.|++|+++++|||||+|.+..+.++-+ .. ++.. ..|
T Consensus 318 ~~~N~TGcGNt-----------ln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~ 386 (697)
T COG1523 318 YYSNGTGCGNT-----------LNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPV 386 (697)
T ss_pred CeecCCccCcc-----------cccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCcc
Confidence 222 256665 99999999999999999999999999999999999987654 11 1111 122
Q ss_pred ---CeEEEeecCCC--cccCCC------ccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhC-CCCccCCCCCCce
Q 045962 240 ---HFTVAEKWDSL--SYRQDG------KLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAA-PPGFIGLLPQNAV 307 (423)
Q Consensus 240 ---~~~~gE~~~~~--~~~~~~------~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~-~~~~~~~~~~~~~ 307 (423)
..++||-|+-. .|+-+. ...++ +.+++.++.|+.+..+....+- ..++... ........|..++
T Consensus 387 l~~~kliAepwD~g~~gyqvG~Fpd~~~~aewn-g~~rD~vr~F~~G~~~~~~~~a---~rl~gS~d~~~~~~~~p~~sI 462 (697)
T COG1523 387 LSGVKLIAEPWDIGPGGYQVGNFPDSPRWAEWN-GRFRDDVRRFWRGDAGLVGEFA---KRLAGSSDLYKRNGRRPSQSI 462 (697)
T ss_pred ccCceeeecchhhcCCCcccccCCCccchhhhC-CcccccccceeeCCCccHHHHH---HHhhcCcchhhccCCCcccee
Confidence 33889998543 343322 23344 6677777778776655443331 1111111 1122345688899
Q ss_pred eccCCCCCCCCCC------------------------C-----CC--C------Chh-hHHHHHHHHHcCCCceEEecCC
Q 045962 308 TFIDNHDTGSTQR------------------------L-----WP--F------PSA-KVMLGYAYILTHPGTPSIFYDH 349 (423)
Q Consensus 308 ~f~~nHD~~r~~~------------------------~-----~~--~------~~~-~~~~a~a~~~~~pG~P~iy~G~ 349 (423)
+|+.+||.....- . .. . ..+ ..+...+.+++..|+||+-.||
T Consensus 463 Nyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml~~gD 542 (697)
T COG1523 463 NYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPMLLAGD 542 (697)
T ss_pred eEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCccccccc
Confidence 9999999921100 0 00 0 012 2344456666778999999999
Q ss_pred CC--------------------Cch------hHHHHHHHHHHHHhcCcccccce----------EEEe-----------e
Q 045962 350 LF--------------------DWD------LKKEIGKLAAIRTKNGINTTSRV----------NILA-----------S 382 (423)
Q Consensus 350 ~~--------------------~w~------~~~~~~~L~~lR~~~~~l~~g~~----------~~~~-----------~ 382 (423)
|+ +|+ ++++++.||+||+++|+|+...+ .++. .
T Consensus 543 e~~rtq~gnnNsYcqdn~inwlDW~~~~~~~l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~~~g~~~~~~~w~ 622 (697)
T COG1523 543 EFGRTQYGNNNAYCQDNEINWLDWSTEANNDLVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLNWNGIPLTQDDWN 622 (697)
T ss_pred ccccccccccccccCCcccceeccCccccHHHHHHHHHHHHHhhhcchhcccchhhccCCCcccceeccCCeeechhccc
Confidence 74 354 79999999999999999976322 2111 0
Q ss_pred c--CCEEEEEE---CCEEEEEEC-CCCCcCccCCc---CeEEeec
Q 045962 383 Q--SDLYVAAI---DDKIITKIG-PKMDLRNLIPR---NFKVATS 418 (423)
Q Consensus 383 ~--~~~~~~~r---~~~~lv~in-~~~~~~~~~~~---~~~~~~~ 418 (423)
+ ...+++.. +++++|++| ...+....+|. .|..+.+
T Consensus 623 ~~~~~~l~~~l~~~~~~~lv~~N~~~~~~~~~lp~~~~~~~~~~~ 667 (697)
T COG1523 623 NGFTGALAVVLDGDKERLLVLINATAEPVEFELPEDEGKWAGLVD 667 (697)
T ss_pred CCCCceEEEEecCCCccEEEEecCCccccceecccccCcceeeec
Confidence 1 23444444 348999999 44555555665 3666554
No 33
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=3.2e-38 Score=329.72 Aligned_cols=193 Identities=19% Similarity=0.207 Sum_probs=147.3
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
++||++++++|+||++|||++|||+||+ ++ ...++|||++.||+.|| |+|||.++|++||++|
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~----------~a------~~gs~hGYdv~D~~~id-p~lGt~edf~~Lv~aa 74 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPIL----------TA------VPGSTHGYDVVDHSEIN-PELGGEEGLRRLSEAA 74 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCc----------cC------CCCCCCCCCCCCCCCcC-CCCCCHHHHHHHHHHH
Confidence 6899999999999999999999999999 54 12578999999999999 9999999999999999
Q ss_pred HHcCCEEEEEEecccCCCCC---C-----------CCccccee--ccCCC------------CC-------------C--
Q 045962 119 NKKGIKCLADIVINHRTAEK---K-----------DRRGIWCI--FEGGT------------PD-------------K-- 155 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~---~-----------~~~~~~~~--f~~~~------------~~-------------~-- 155 (423)
|++||+||+|+|+|||+.+. + ++...||. |.... ++ .
T Consensus 75 h~~Gm~vIlDiVpNH~a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~ 154 (825)
T TIGR02401 75 RARGLGLIVDIVPNHMAVHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGD 154 (825)
T ss_pred HHCCCEEEEEecccccccccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCC
Confidence 99999999999999999872 1 11222331 11000 00 0
Q ss_pred ---CC-CCCCCccccCC-----------------------------CCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 045962 156 ---RL-DWGPSFICRDD-----------------------------TTYS--DGRGHPDSGEPFGPAPDIDHLNPRVQKE 200 (423)
Q Consensus 156 ---~~-~~~~~~~~~~~-----------------------------~~~~--~~~~~~~~~~~~~~~~dln~~~p~v~~~ 200 (423)
.. .++..++.... ..|. +...||..+.....+++++.++|+|.+.
T Consensus 155 ~~~~l~y~~~~~Pi~p~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~ 234 (825)
T TIGR02401 155 GTLALRYYDHRLPLAPGTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDA 234 (825)
T ss_pred CceeEEecCccCCcCccchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHH
Confidence 00 00000000000 0122 3445677777889999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHHhcCC-CeEEEe-ecC
Q 045962 201 LSDWMNWLKTEIGFDGWRFDFVKGY--APSITRLYMKNTMP-HFTVAE-KWD 248 (423)
Q Consensus 201 ~~~~l~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~~~~p-~~~~gE-~~~ 248 (423)
..+++..|+++.-|||+|||+++++ |+++|+++.+..+| .+++.| ++.
T Consensus 235 ~h~~i~~lv~~g~vdGlRIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~ 286 (825)
T TIGR02401 235 THRLVLELVAEGLVDGLRIDHIDGLADPEGYLRRLRELVGPARYLVVEKILA 286 (825)
T ss_pred HHHHHHHHHHcCCCceEEeccccccCChHHHHHHHHHhcCCCceEEEEEecc
Confidence 9999999998555999999999999 88899999888886 788888 443
No 34
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=1.1e-36 Score=305.88 Aligned_cols=324 Identities=16% Similarity=0.157 Sum_probs=222.4
Q ss_pred hhhHHHHcCCcEEEcCCccccCCCCcccccc--ccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 045962 48 RIPDIASAGITHVWLSSTFSLCCSPRLFFHS--IIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKC 125 (423)
Q Consensus 48 ~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~--~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~V 125 (423)
..+||++|||++|||+|++ ++ +.+....+..+.||++.| +.|| |+|||++||++|+++||++||+|
T Consensus 79 ~wdyL~~LGV~~iwl~P~~----------~SGgi~g~~~tP~~D~gyDi~d-~~Id-p~~GT~eDf~~L~~~Ah~~G~~v 146 (688)
T TIGR02455 79 LWKALSEIGVQGIHNGPIK----------LSGGIRGREFTPSIDGNFDRIS-FDID-PLLGSEEELIQLSRMAAAHNAIT 146 (688)
T ss_pred HHHHHHHhCCCEEEeCcce----------ecccccccCCCCCCCCCCCccc-CccC-cccCCHHHHHHHHHHHHHCCCEE
Confidence 3799999999999999999 43 222233346688999999 5999 99999999999999999999999
Q ss_pred EEEEecccCCCCCC--------CCcccce-----------eccCCCCCC--------------CC----CCC--CCcccc
Q 045962 126 LADIVINHRTAEKK--------DRRGIWC-----------IFEGGTPDK--------------RL----DWG--PSFICR 166 (423)
Q Consensus 126 ilD~V~nh~~~~~~--------~~~~~~~-----------~f~~~~~~~--------------~~----~~~--~~~~~~ 166 (423)
|+|+|+||+|..|+ ++.+.+| .+.+..+.. .. ... ..|..+
T Consensus 147 i~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~p 226 (688)
T TIGR02455 147 IDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEP 226 (688)
T ss_pred EEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCC
Confidence 99999999999884 2333333 333211110 00 000 001001
Q ss_pred C----CCCCC--------CCCCCCCCCCCCCCCCCCCCCCHH--HHHHHH-HHHHHHHHhcCCCeEEecccCCCC-----
Q 045962 167 D----DTTYS--------DGRGHPDSGEPFGPAPDIDHLNPR--VQKELS-DWMNWLKTEIGFDGWRFDFVKGYA----- 226 (423)
Q Consensus 167 ~----~~~~~--------~~~~~~~~~~~~~~~~dln~~~p~--v~~~~~-~~l~~w~~~~gvDGfR~D~a~~~~----- 226 (423)
+ .+.|. ..+..+....++..+|||||.||. ||+.|+ +++.+|++ .|+||||+||+.++-
T Consensus 227 g~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG~~GfRLDAvpfLg~e~~~ 305 (688)
T TIGR02455 227 GIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LGARGLRLDANGFLGVERRA 305 (688)
T ss_pred CcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hccccceeccccceeeecCC
Confidence 1 12222 122333455678999999999999 999999 89999997 999999999987762
Q ss_pred --------HHHHH---HHHH--hcCC-CeEEEeecCCCcccCCCccchhhhHHHHHHHHHHHHhCCccccccchhhhHhh
Q 045962 227 --------PSITR---LYMK--NTMP-HFTVAEKWDSLSYRQDGKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQ 292 (423)
Q Consensus 227 --------~~~~~---~~~~--~~~p-~~~~gE~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~ 292 (423)
.++.+ .++. .-++ .++++|.-- ..+.+..|+. ++....|||.++..+.
T Consensus 306 ~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl----------------~~~d~~~~~g--~~~dl~~dF~t~p~~~ 367 (688)
T TIGR02455 306 EGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNL----------------TIDDIAAMSH--GGADLSYDFITRPAYH 367 (688)
T ss_pred CCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccC----------------CHHHHHHHhC--CCcceeecccccHHHH
Confidence 23433 3333 2234 888999743 2446666666 3677778888776555
Q ss_pred hC--------------CCCccCCCCCCceeccCCCCCC--------------------------------------CCCC
Q 045962 293 AA--------------PPGFIGLLPQNAVTFIDNHDTG--------------------------------------STQR 320 (423)
Q Consensus 293 ~~--------------~~~~~~~~~~~~~~f~~nHD~~--------------------------------------r~~~ 320 (423)
.+ ......-.+...+.|+.|||+- +...
T Consensus 368 ~AL~tgda~pLr~~L~~~~~~gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~ 447 (688)
T TIGR02455 368 HALLTGDTEFLRLMLKEMHAFGIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSG 447 (688)
T ss_pred HHHHcCCHHHHHHHHHhhhcCCCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHHHHHhcC
Confidence 44 0000111234457899999980 0000
Q ss_pred ---------------------------------CCCCChhhHHHHHHHHHc----CCCceEEecC--------------C
Q 045962 321 ---------------------------------LWPFPSAKVMLGYAYILT----HPGTPSIFYD--------------H 349 (423)
Q Consensus 321 ---------------------------------~~~~~~~~~~~a~a~~~~----~pG~P~iy~G--------------~ 349 (423)
......++++++++++++ +||+|+|||| +
T Consensus 448 d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~d 527 (688)
T TIGR02455 448 EHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAE 527 (688)
T ss_pred CCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhh
Confidence 001123468899999999 9999999999 4
Q ss_pred CCC-----c----------------------------------------hhHHHHHHHHHHHHhcCcccccceEEEee-c
Q 045962 350 LFD-----W----------------------------------------DLKKEIGKLAAIRTKNGINTTSRVNILAS-Q 383 (423)
Q Consensus 350 ~~~-----w----------------------------------------~~~~~~~~L~~lR~~~~~l~~g~~~~~~~-~ 383 (423)
|++ | .+...+++++++|+++|++..|.+..+.+ +
T Consensus 528 eigmGD~~wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~ 607 (688)
T TIGR02455 528 LMGDGDTRWIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPDVQA 607 (688)
T ss_pred hhccCccccccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecCCCC
Confidence 332 2 18999999999999999999999988776 4
Q ss_pred CCEEEEEE---C--CEEEEEECCC
Q 045962 384 SDLYVAAI---D--DKIITKIGPK 402 (423)
Q Consensus 384 ~~~~~~~r---~--~~~lv~in~~ 402 (423)
+.++++.+ + +.+|++.|.+
T Consensus 608 ~gvLa~v~~l~~~~~~~L~v~Nfs 631 (688)
T TIGR02455 608 PGLLVMVHELPAGKGIQITALNFG 631 (688)
T ss_pred CcEEEEEEEcCCCCceEEEeeccC
Confidence 58999987 2 4455555643
No 35
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-32 Score=252.15 Aligned_cols=357 Identities=18% Similarity=0.284 Sum_probs=236.0
Q ss_pred CceeeeeeecccCCCCCCcHHHHH-hhhhHHHHcCCcEEEcCCccccCC-CCccccccccccccCCCCCCCCcccccCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLK-KRIPDIASAGITHVWLSSTFSLCC-SPRLFFHSIIHQAYSHASLAGYMPGRLYDL 100 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~-~~L~ylk~lGi~~I~l~Pi~~~~~-~~~~~~~~~~~~~~~~~~~~GY~~~d~~~i 100 (423)
++.|+|.|.|. +.+|. |+-..|.--|+.+|+++|+.|+-. .+ ...++...|+|++ |.+
T Consensus 28 R~tmVHLFEWK--------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~-----------~~rPWWeRYQPvS-YKL 87 (504)
T KOG2212|consen 28 RTTIVHLFEWK--------WVDIALECERFLAPKGFGGVQVSPPNENVAIHN-----------PFRPWWERYQPVS-YKL 87 (504)
T ss_pred cceEEEEEEee--------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcC-----------CCCCceeecccce-EEe
Confidence 68999999996 45554 555688999999999999996522 11 0023444599997 789
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCC-----Ccccce-----eccCCCCCCCCCCCCCccccC---
Q 045962 101 HASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKD-----RRGIWC-----IFEGGTPDKRLDWGPSFICRD--- 167 (423)
Q Consensus 101 d~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~-----~~~~~~-----~f~~~~~~~~~~~~~~~~~~~--- 167 (423)
+ .|-|.+|||+.||..|.+.|+++++|+|+|||+....+ ..|... .|. +.|+.-.++++. .|..
T Consensus 88 ~-tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfP-GVPYs~~DFn~~-kc~~~~~ 164 (504)
T KOG2212|consen 88 C-TRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFP-GVPYSGWDFNDG-KCKTGSG 164 (504)
T ss_pred e-ccCCCHHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCC-CCCcccccCCCc-ccCCCcc
Confidence 9 99999999999999999999999999999999963211 111111 121 334444444431 1111
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhc---C-----
Q 045962 168 -DTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNT---M----- 238 (423)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~---~----- 238 (423)
...|.+. .....|-.-++.|||..+..||..++++|.++++ .||.|||+||+|||+++-+..++..+ +
T Consensus 165 ~i~~~Nda--~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~ 241 (504)
T KOG2212|consen 165 DIENYNDA--TQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFP 241 (504)
T ss_pred ccccccch--hhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hccceeeechhhccChHHHHHHHHHHhhccccccc
Confidence 1122211 1234566789999999999999999999999997 99999999999999998777764432 1
Q ss_pred ---CCeEEEeecCCC-------cccC-CCccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhCCCCccCCCCCCce
Q 045962 239 ---PHFTVAEKWDSL-------SYRQ-DGKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAPPGFIGLLPQNAV 307 (423)
Q Consensus 239 ---p~~~~gE~~~~~-------~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~ 307 (423)
..|++-|+.+.. .|.. +.-.++. +-.++-..+++. .....++....++.......++
T Consensus 242 s~srpfi~qEVID~GgE~v~~~dY~g~G~~TeF~---f~~~ig~~~r~~---------~~~kyL~nwG~~wGf~~s~~~L 309 (504)
T KOG2212|consen 242 SGSKPFIYQEVIDLGGEPIKSSDYFGNGRVTEFK---FGAKLGTVIRKW---------NKMKYLKNWGEGWGFMPSDRAL 309 (504)
T ss_pred CCCCceehhhhhhcCCceeecccccCCceeeeee---chHHHHHHHhcc---------hhHHHHHhcCCccCcCCCcceE
Confidence 155677766432 1111 1111111 111221111110 0112233334443333235789
Q ss_pred eccCCCCCCCCCCCC-----CC-ChhhHHHHHHHHHcCC-CceEEecCCCC----------------------------C
Q 045962 308 TFIDNHDTGSTQRLW-----PF-PSAKVMLGYAYILTHP-GTPSIFYDHLF----------------------------D 352 (423)
Q Consensus 308 ~f~~nHD~~r~~~~~-----~~-~~~~~~~a~a~~~~~p-G~P~iy~G~~~----------------------------~ 352 (423)
+|++|||+.|..+.- .+ .+++.+||.+||++.| |+|-+...-.+ +
T Consensus 310 ~FvDNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~tC~~G 389 (504)
T KOG2212|consen 310 VFVDNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPDTTCGNG 389 (504)
T ss_pred EEeccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCCcceecceeCCCCcccCc
Confidence 999999999865531 11 3567899999999999 99988876311 2
Q ss_pred c---hhHHHHHHHHHHHHhcCcccccceE-EEeecCCEEEEEECCEEEEEECCC-CC----cCccCCc-CeEEeeccC
Q 045962 353 W---DLKKEIGKLAAIRTKNGINTTSRVN-ILASQSDLYVAAIDDKIITKIGPK-MD----LRNLIPR-NFKVATSGK 420 (423)
Q Consensus 353 w---~~~~~~~~L~~lR~~~~~l~~g~~~-~~~~~~~~~~~~r~~~~lv~in~~-~~----~~~~~~~-~~~~~~~g~ 420 (423)
| .--+.|+++.++|..- +.-+++ +.....+.++|.|+++..+++|+. .+ ....+|. .|++++||.
T Consensus 390 WvCEHRWrqI~~Mv~FrnAV---~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~s~~l~T~LPAGtYCDviSG~ 464 (504)
T KOG2212|consen 390 WVCEHRWRQIRNMVNFRNAV---DGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDFSLTLQTGLPAGTYCDVISGD 464 (504)
T ss_pred eeeechHHHHHHHHhhhhhc---CCccccceeeCCCcEEEEecCCccEEEEeCcchhHHHHHhcCCCCCceeeeeccc
Confidence 3 2667889999999873 333444 444457999999999999999964 22 2334665 899999885
No 36
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=100.00 E-value=4e-32 Score=285.19 Aligned_cols=192 Identities=20% Similarity=0.233 Sum_probs=143.3
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
+++|++++++|+||++|||++|||+||+ ++ .+.++|||++.||+.|| |.||+.++|++||++|
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~----------~a------~~gs~hGYdv~D~~~id-p~lGt~e~f~~Lv~aa 78 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPIL----------AA------RPGSTHGYDVVDHTRIN-PELGGEEGLRRLAAAL 78 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCc----------cC------CCCCCCCCCcCCCCCcC-CCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999 54 12578999999999999 9999999999999999
Q ss_pred HHcCCEEEEEEecccCCCCCC--------------CCccccee--ccC----------CCCCCC----------------
Q 045962 119 NKKGIKCLADIVINHRTAEKK--------------DRRGIWCI--FEG----------GTPDKR---------------- 156 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~--------------~~~~~~~~--f~~----------~~~~~~---------------- 156 (423)
|++||+||+|+|+|||+.+++ ++...||. |+. +.++..
T Consensus 79 h~~Gi~VIlDiV~NH~~~~~~~n~ww~dvl~~g~~S~y~~~Fdidw~~~~g~~llP~LG~~y~~~l~~g~l~l~~~~~g~ 158 (879)
T PRK14511 79 RAHGMGLILDIVPNHMAVGGPDNPWWWDVLEWGRSSPYADFFDIDWDSGEGKVLLPVLGDQYGEVLAAGELRLAFDDDGA 158 (879)
T ss_pred HHCCCEEEEEeccccccCcCccCHHHHHHHHhCCCCCccCceeeeecCCCCceecCccCCcccchhhCCceEEeecCCCc
Confidence 999999999999999998762 12233442 211 000000
Q ss_pred ---CCCCCCccccCC-----------------------------------------------------------------
Q 045962 157 ---LDWGPSFICRDD----------------------------------------------------------------- 168 (423)
Q Consensus 157 ---~~~~~~~~~~~~----------------------------------------------------------------- 168 (423)
..|...++-...
T Consensus 159 ~~~~y~d~~fPl~p~t~~~il~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~n~~~~~~~~~L~~l 238 (879)
T PRK14511 159 FVLRYYDHRFPIAPGTYALILRHRLDLEALAAEFPALGELESILTAAQHLASPAVRAFIEQALAAFDGRKGDGRSRLDRL 238 (879)
T ss_pred eEEEEcCccCCCCCCchhhhhhcchhHHHHHHHHhhhhcccchhhHHHhhcChHHHHHHHHHHHHhcCCCCchhhhHHHH
Confidence 001000000000
Q ss_pred --------CCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHHh
Q 045962 169 --------TTYS--DGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITRLYMKN 236 (423)
Q Consensus 169 --------~~~~--~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~~ 236 (423)
..|. +...||..+.+.+++.-++-++|+|.+.....+..|+++--|||+|||.+.++ |..+++.+-+.
T Consensus 239 l~~Q~YRLa~Wr~a~~eiNYRRFFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~DP~~Yl~rLr~~ 318 (879)
T PRK14511 239 LERQHYRLASWRVADDEINYRRFFDVNTLAAVRVEDPEVFEETHALILRLLREGLVDGLRIDHPDGLADPRGYLRRLRRR 318 (879)
T ss_pred HHhcceeccchhccCcccCcceeecchhheeeecCCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHhc
Confidence 0111 23346666666788999999999999999999999999889999999999999 45778887555
Q ss_pred cC-CCeEEEeec
Q 045962 237 TM-PHFTVAEKW 247 (423)
Q Consensus 237 ~~-p~~~~gE~~ 247 (423)
.. |.+++.|-.
T Consensus 319 ~~~~~yivvEKI 330 (879)
T PRK14511 319 TGRGAYIVVEKI 330 (879)
T ss_pred cCCCCeEEEEec
Confidence 44 577888843
No 37
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-33 Score=281.55 Aligned_cols=335 Identities=18% Similarity=0.229 Sum_probs=206.7
Q ss_pred CceeeeeeecccCC---CCCCcHHHHHhh-hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccC
Q 045962 23 PTILFQGFNWESCN---KKGGWYNFLKKR-IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLY 98 (423)
Q Consensus 23 ~~v~~~~F~~d~~~---~~~G~~~~~~~~-L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~ 98 (423)
++.+++.|+- +.. .-|| +++.++| |++||+||+|||+||||+||+ . -...|||.|++||
T Consensus 233 YE~HVrgfS~-~E~~v~~~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~--------~-------~~~s~GY~~~nFF 295 (757)
T KOG0470|consen 233 YELHVRGFSS-HESKVNTRGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFG--------H-------YYASWGYQVTNFF 295 (757)
T ss_pred EEEeeccccC-CCCccccccc-hhhhhhhhhhHHHHhCccceEEeehhhhh--------h-------hhhccCcceeEee
Confidence 4778889983 222 2355 9999999 999999999999999999762 2 1458999999999
Q ss_pred CCCCCCCCCHH------HHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCC
Q 045962 99 DLHASSYGSQN------ELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYS 172 (423)
Q Consensus 99 ~id~~~~Gt~~------~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 172 (423)
++- .+|||.+ |||+||++||..||-|+||||.||++.+. ......|+|-.+..+.--.+.+. .+
T Consensus 296 aps-srYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~---~d~l~~fdGid~~~Yf~~~~r~~-----h~- 365 (757)
T KOG0470|consen 296 APS-SRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNS---KDGLNMFDGIDNSVYFHSGPRGY-----HN- 365 (757)
T ss_pred ccc-ccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCc---CCcchhccCcCCceEEEeCCccc-----cc-
Confidence 999 9999999 99999999999999999999999999843 22333344421111100000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH-------------------------
Q 045962 173 DGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP------------------------- 227 (423)
Q Consensus 173 ~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~------------------------- 227 (423)
-.+.+ -||+++|+|+++|++.|+||+++|+|||||+|.+.+|-.
T Consensus 366 ~~~~r-----------~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d 434 (757)
T KOG0470|consen 366 SWCSR-----------LFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVD 434 (757)
T ss_pred ccccc-----------cccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCccc
Confidence 01122 299999999999999999999999999999999988743
Q ss_pred --HHHHHH-----HHhcCCCeEEEeecCCCccc-------CCCccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhh
Q 045962 228 --SITRLY-----MKNTMPHFTVAEKWDSLSYR-------QDGKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQA 293 (423)
Q Consensus 228 --~~~~~~-----~~~~~p~~~~gE~~~~~~~~-------~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~ 293 (423)
+...-. +-...| .+|++.|+.+.+- +++...++ ..++.+++.+..........- +... ....
T Consensus 435 ~~~l~~lmlAnd~~l~~~~-~~It~~~D~~gm~~~~~~P~~~g~~~~d-~~yr~~~~~~~k~~~~Lk~~~-~~~~-~~gs 510 (757)
T KOG0470|consen 435 VDALVYLMLANDPLLGGTP-GLITDAEDVSGMPGLGCFPVWQGGAGFD-GLYRLAVRLFDKWIQLLKGSS-DAEW-IMGS 510 (757)
T ss_pred ccHHHHHHhhcchhhhcCC-cceEeeeccccCCCcCCccccccccccc-hhhhHHhhhHHHHHHHhccCc-hhhe-eccC
Confidence 111101 111123 3677777654321 13333333 234445544333222111000 0000 0000
Q ss_pred C-CCCccCCCCCCceeccCCCCCCCCCCCC-------------CC-------C----h--hhHHHHHHHHHc-CCCceEE
Q 045962 294 A-PPGFIGLLPQNAVTFIDNHDTGSTQRLW-------------PF-------P----S--AKVMLGYAYILT-HPGTPSI 345 (423)
Q Consensus 294 ~-~~~~~~~~~~~~~~f~~nHD~~r~~~~~-------------~~-------~----~--~~~~~a~a~~~~-~pG~P~i 345 (423)
. ..-.+...|...++|+++||......+. .. . . .+.++...+.++ ..|+|++
T Consensus 511 ~~~~ltN~R~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~ 590 (757)
T KOG0470|consen 511 IDYTLTNRRYPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLN 590 (757)
T ss_pred cceeeeccccccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCcccee
Confidence 0 0112346788899999999995432210 00 0 0 112222233333 4799999
Q ss_pred ecCCCCC----------------------------chhHHHHHHHHHHHHhcCccc--cc----ceEEE---eecCCEEE
Q 045962 346 FYDHLFD----------------------------WDLKKEIGKLAAIRTKNGINT--TS----RVNIL---ASQSDLYV 388 (423)
Q Consensus 346 y~G~~~~----------------------------w~~~~~~~~L~~lR~~~~~l~--~g----~~~~~---~~~~~~~~ 388 (423)
++|+|++ |+++++.+.|+.+++.+-.|. .| ++.++ ...+++++
T Consensus 591 fmGdEfGh~e~~d~~~~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~~~i~ 670 (757)
T KOG0470|consen 591 FMGDEFGHPEWLDFPRYGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEADEVIV 670 (757)
T ss_pred ccccccCCccccCCCcccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhhheee
Confidence 9999874 248888899999999987662 22 22232 22456777
Q ss_pred EEECCEEEEEEC
Q 045962 389 AAIDDKIITKIG 400 (423)
Q Consensus 389 ~~r~~~~lv~in 400 (423)
|+|++ .++++|
T Consensus 671 fer~~-~~~vfn 681 (757)
T KOG0470|consen 671 FERGP-LLFVFN 681 (757)
T ss_pred eccCC-eEEEEE
Confidence 77643 333444
No 38
>PLN03244 alpha-amylase; Provisional
Probab=99.97 E-value=3.5e-30 Score=263.57 Aligned_cols=299 Identities=15% Similarity=0.179 Sum_probs=186.2
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCC
Q 045962 93 MPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYS 172 (423)
Q Consensus 93 ~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 172 (423)
.+++||+++ ++|||.++|++||++||++||+||||+|+||++.+... + ...|++. +. .|. .
T Consensus 426 ~vt~fFAps-sRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~--G-L~~fDGt-~~---~Yf-----------~ 486 (872)
T PLN03244 426 KVTNFFAAS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMV--G-LSLFDGS-ND---CYF-----------H 486 (872)
T ss_pred ccCcccccC-cccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCcccc--c-hhhcCCC-cc---cee-----------c
Confidence 589999999 99999999999999999999999999999999976411 1 1112221 00 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-------------------------H
Q 045962 173 DGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------------------P 227 (423)
Q Consensus 173 ~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~-------------------------~ 227 (423)
.+..... ..| +-..+|+.+++|+++|++.+++|++++||||||+|++..|- .
T Consensus 487 ~~~~g~~--~~W-Gs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv 563 (872)
T PLN03244 487 TGKRGHH--KHW-GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDAL 563 (872)
T ss_pred cCCCCcc--CCC-CCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHH
Confidence 0000000 011 11348999999999999999999999999999999994432 1
Q ss_pred HHHHH---HHHhcCC-CeEEEeecCCCc-----ccCCC---ccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhCC
Q 045962 228 SITRL---YMKNTMP-HFTVAEKWDSLS-----YRQDG---KLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAAP 295 (423)
Q Consensus 228 ~~~~~---~~~~~~p-~~~~gE~~~~~~-----~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~ 295 (423)
.|++. .+.+..| +++|||..+.-+ ...+| +..++. +.......|+...+... . ....+.....
T Consensus 564 ~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnM-gwmdd~lkylk~~pder--w--~~~~ItfsL~ 638 (872)
T PLN03244 564 MYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNL-SAPDMWLDFLDNIPDHE--W--SMSKIVSTLI 638 (872)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecC-cchHHHHHHHHhCCCcc--c--CHHHHhhhhh
Confidence 23333 3566677 789999876421 11122 222221 11223334554432111 1 1111111100
Q ss_pred CCccCCCCCCceeccCCCCCCCCC--C------------CCCC------ChhhHHHHHHHHHcCCCce-EEecCCCCC--
Q 045962 296 PGFIGLLPQNAVTFIDNHDTGSTQ--R------------LWPF------PSAKVMLGYAYILTHPGTP-SIFYDHLFD-- 352 (423)
Q Consensus 296 ~~~~~~~~~~~~~f~~nHD~~r~~--~------------~~~~------~~~~~~~a~a~~~~~pG~P-~iy~G~~~~-- 352 (423)
.........+.|.||||..-.. + .... +.+..+++-++++++||.| ++|+|+|++
T Consensus 639 --~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhp 716 (872)
T PLN03244 639 --ANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHP 716 (872)
T ss_pred --cccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCc
Confidence 1122244678999999992110 0 0000 0012345556788899987 899998642
Q ss_pred --------------------ch---------hHHHHHHHHHHHHhcCcccccceEEE--eecCCEEEEEECCEEEEEECC
Q 045962 353 --------------------WD---------LKKEIGKLAAIRTKNGINTTSRVNIL--ASQSDLYVAAIDDKIITKIGP 401 (423)
Q Consensus 353 --------------------w~---------~~~~~~~L~~lR~~~~~l~~g~~~~~--~~~~~~~~~~r~~~~lv~in~ 401 (423)
|+ +.++++.|++|++++++|..|..... ..++.|++|.|+ .+|+|+|.
T Consensus 717 e~~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~-~LLfVfNF 795 (872)
T PLN03244 717 ERIEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRG-PFLFIFNF 795 (872)
T ss_pred hheeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEec-CEEEEEeC
Confidence 32 67799999999999999976643333 345679999997 68888885
Q ss_pred CC-----C--cCccCCcCeEEeeccCC
Q 045962 402 KM-----D--LRNLIPRNFKVATSGKD 421 (423)
Q Consensus 402 ~~-----~--~~~~~~~~~~~~~~g~~ 421 (423)
.. + ++.+.++.|+.+++++.
T Consensus 796 ~P~~sy~dYrIGVp~~G~Y~eILNSD~ 822 (872)
T PLN03244 796 HPSNSYEGYDVGVEEAGEYQIILNSDE 822 (872)
T ss_pred CCCCCccCCEECCCCCCeEEEEEeCCh
Confidence 32 2 33344569999998875
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.94 E-value=8.4e-27 Score=204.35 Aligned_cols=97 Identities=27% Similarity=0.483 Sum_probs=87.5
Q ss_pred ceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCC
Q 045962 24 TILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHAS 103 (423)
Q Consensus 24 ~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~ 103 (423)
++++++|. +++++++|||++++++|+|||+|||++|||+|++ ++... ..++|||++.||+.++ |
T Consensus 1 qi~~~~F~-~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~----------~~~~~----~~~~~gY~~~d~~~i~-~ 64 (166)
T smart00642 1 QIYPDRFA-DGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIF----------ESPQG----YPSYHGYDISDYKQID-P 64 (166)
T ss_pred Ceeecccc-CCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcce----------eCCCC----CCCCCCcCccccCCCC-c
Confidence 58999999 5677779999999999999999999999999999 55000 1378999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEecccCCC
Q 045962 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRTA 136 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~ 136 (423)
+|||+++|++||++||++||+||+|+|+||++.
T Consensus 65 ~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 65 RFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 999999999999999999999999999999983
No 40
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.87 E-value=2.5e-21 Score=215.49 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=76.6
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
+++|++++++|+||++|||++|||+||+ ++ .+.++|||++.||+.|| |.||+.++|++||++|
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~----------~a------~~gs~hGYdv~D~~~id-p~lG~~edf~~Lv~~a 816 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPIL----------KA------RPGSTHGYDIVDHSQIN-PEIGGEEGFERFCAAL 816 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCc----------CC------CCCCCCCCCCCCCCccC-cccCCHHHHHHHHHHH
Confidence 5899999999999999999999999999 53 12578999999999999 9999999999999999
Q ss_pred HHcCCEEEEEEecccCCCC
Q 045962 119 NKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~ 137 (423)
|++||+||+|+|+|||+.+
T Consensus 817 h~~Gi~vilDiV~NH~~~~ 835 (1693)
T PRK14507 817 KAHGLGQLLDIVPNHMGVG 835 (1693)
T ss_pred HHCCCEEEEEecccccCCC
Confidence 9999999999999999953
No 41
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=2.8e-19 Score=180.60 Aligned_cols=189 Identities=20% Similarity=0.271 Sum_probs=138.9
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+|...++.||||++|||.++|++||+ +. -+.+.|||+|+|+..|+ |.+|+.+.|.+||+++|+
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIf----------tA------~pGStHGYDVvD~t~In-PeLGG~egl~rLvaalk~ 79 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIF----------TA------RPGSTHGYDVVDPTEIN-PELGGEEGLERLVAALKS 79 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchh----------hc------CCCCCCCccCCCccccC-hhhcChHHHHHHHHHHHh
Confidence 59999999999999999999999999 65 24799999999999999 999999999999999999
Q ss_pred cCCEEEEEEecccCCCC-CCC----------Cccccee-ccC--C-----------------------------------
Q 045962 121 KGIKCLADIVINHRTAE-KKD----------RRGIWCI-FEG--G----------------------------------- 151 (423)
Q Consensus 121 ~Gi~VilD~V~nh~~~~-~~~----------~~~~~~~-f~~--~----------------------------------- 151 (423)
+||.+|+|+|+|||+.. +.+ +...|.. |+- .
T Consensus 80 ~GlGlI~DIVPNHMav~g~~N~ww~DVLe~G~~S~ya~yFDI~W~~~~~a~gkillP~LGd~~devl~~G~i~l~~d~~~ 159 (889)
T COG3280 80 RGLGLIVDIVPNHMAVGGHENPWWWDVLENGRDSAYANYFDIDWEEPDGAQGKILLPFLGDDYDEVLEKGEIKLAYDREA 159 (889)
T ss_pred cCCceEEEecccchhcccccChHHHHHHHhCcCccchhhcccccCCCCCcCceeeeccccchhhhHHhcCceeeeecccc
Confidence 99999999999999987 311 0111110 000 0
Q ss_pred -----------CCCCCCCCCCCc--------------------------------cccCC--------------------
Q 045962 152 -----------TPDKRLDWGPSF--------------------------------ICRDD-------------------- 168 (423)
Q Consensus 152 -----------~~~~~~~~~~~~--------------------------------~~~~~-------------------- 168 (423)
-|-.+.+|.... .+.+.
T Consensus 160 g~l~l~Y~d~~~Pl~p~s~~~l~G~l~a~~~~~~~~~~~~~r~~~~~~~~~la~~~~t~~~~a~ld~~~a~~na~~~~l~ 239 (889)
T COG3280 160 GRLALRYYDLRLPLAPGSYAFLLGNLNAILERIAAVPSTRERETQAQFRAALAEILATPNIAACLDECLARFNADPEQLD 239 (889)
T ss_pred chhHHhhhhcccCcCCcchhhhcCchhhHHHHHhhcchhHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcccHHHHH
Confidence 000011111000 00000
Q ss_pred ----------CCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHH
Q 045962 169 ----------TTYSDG--RGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITRLYM 234 (423)
Q Consensus 169 ----------~~~~~~--~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~ 234 (423)
..|..+ ..++......+++.-+..+.+.|.+.-...+..|+++-=|||.|||.+.++ |+.+++.+-
T Consensus 240 ~L~~~Q~yRLa~Wr~aad~inyRRFF~Vn~L~glRvEd~~VF~~tH~li~~L~~eglidGlRIDHiDGLaDP~gYl~rLR 319 (889)
T COG3280 240 ALHERQHYRLASWRVAADEINYRRFFDVNSLAGLRVEDPAVFEATHRLIFELLREGLIDGLRIDHIDGLADPKGYLRRLR 319 (889)
T ss_pred HHHHhhhHhhhhhhccccccCeeeeeeccchheeeeccHHHHHHHHHHHHHHHHhccccceeecccccccCHHHHHHHHH
Confidence 012222 344555555688888999999999999999999999888999999999998 467888887
Q ss_pred HhcCC-CeEEEee
Q 045962 235 KNTMP-HFTVAEK 246 (423)
Q Consensus 235 ~~~~p-~~~~gE~ 246 (423)
++..| .+++-|-
T Consensus 320 ~~~G~~~~I~VEK 332 (889)
T COG3280 320 QLVGPDRYIVVEK 332 (889)
T ss_pred HhcCCCcEEEEeh
Confidence 77775 7777663
No 42
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.77 E-value=1.7e-16 Score=172.31 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=77.7
Q ss_pred CCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCC----CHHHHHH
Q 045962 38 KGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYG----SQNELKS 113 (423)
Q Consensus 38 ~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~G----t~~~l~~ 113 (423)
.-|+|.++.++|++||++|+|.||++||+ +. +.+++.|++.||+.|| |.|| +.++|++
T Consensus 127 ~mG~~~~w~~~L~~ik~lGyN~IhftPI~----------~~-------G~SnS~Ysi~Dyl~id-P~~~~~~~~~~d~~~ 188 (1464)
T TIGR01531 127 LLGPLSEWEPRLRVAKEKGYNMIHFTPLQ----------EL-------GGSNSCYSLYDQLQLN-QHFKSQKDGKNDVQA 188 (1464)
T ss_pred hcCCHHHHHHHHHHHHHcCCCEEEeCCCc----------cC-------CCCCCCccccchhhcC-hhhcccCCcHHHHHH
Confidence 36999999999999999999999999999 44 4688999999999999 9994 8999999
Q ss_pred HHHHHHHc-CCEEEEEEecccCCCCC
Q 045962 114 LIQAFNKK-GIKCLADIVINHRTAEK 138 (423)
Q Consensus 114 lv~~aH~~-Gi~VilD~V~nh~~~~~ 138 (423)
||+++|++ ||+||+|+|+||++.+|
T Consensus 189 lV~~~h~~~Gm~~ilDvV~NHTa~ds 214 (1464)
T TIGR01531 189 LVEKLHRDWNVLSITDIVFNHTANNS 214 (1464)
T ss_pred HHHHHHHhcCCEEEEEeeecccccCC
Confidence 99999997 99999999999999988
No 43
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.17 E-value=1.3e-09 Score=109.54 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=103.6
Q ss_pred CCcHHHHHhhhhHHHH---------------cCCcEEEcCCccccC---CC---Cccccccc------------------
Q 045962 39 GGWYNFLKKRIPDIAS---------------AGITHVWLSSTFSLC---CS---PRLFFHSI------------------ 79 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~---------------lGi~~I~l~Pi~~~~---~~---~~~~~~~~------------------ 79 (423)
.|++.|+++....|.+ .|+++|+|+||=+.. .+ ...+|.-.
T Consensus 192 ~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~~ 271 (811)
T PF14872_consen 192 EGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIRPEDEDELDPETEGVHEDG 271 (811)
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeecccccccccccccccccCc
Confidence 5999999988776653 699999999985321 11 11222210
Q ss_pred ---cccccCCCCCCCCcc--cccCCCCCCCCCC--HHHHHHHHHHHHH---cCCEEEEEEecccCCCCCCCCcccceecc
Q 045962 80 ---IHQAYSHASLAGYMP--GRLYDLHASSYGS--QNELKSLIQAFNK---KGIKCLADIVINHRTAEKKDRRGIWCIFE 149 (423)
Q Consensus 80 ---~~~~~~~~~~~GY~~--~d~~~id~~~~Gt--~~~l~~lv~~aH~---~Gi~VilD~V~nh~~~~~~~~~~~~~~f~ 149 (423)
+........+|||++ ...-+.+|.-++| .+|+-.||+++|. ..|+||.|+|+.|.-..+.+ .-
T Consensus 272 ~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~~~----LL--- 344 (811)
T PF14872_consen 272 DVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQALD----LL--- 344 (811)
T ss_pred eEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchhhH----hh---
Confidence 122344578999997 3455666444454 7999999999997 56999999999998532210 00
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 045962 150 GGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 225 (423)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~ 225 (423)
.. .|-.|.+-| .-|+|+.+|.||+-+.+.-+.=+. +|+||+|+|.+..+
T Consensus 345 ----------n~--------~flkGPnMY--------GQdlnhq~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 345 ----------NR--------RFLKGPNMY--------GQDLNHQNPVVRAILLEMQRRKIN-TGADGIRVDGGQDF 393 (811)
T ss_pred ----------hh--------hhccCCccc--------cccccccChHHHHHHHHHHHhhcc-cCCceeEecccccc
Confidence 00 001111111 124999999999999998888886 99999999999876
No 44
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=99.00 E-value=6.5e-09 Score=105.51 Aligned_cols=189 Identities=23% Similarity=0.354 Sum_probs=110.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHH---------hcCCCeEEecccCCCCHHHHHHH---HHh----------cCCC
Q 045962 183 PFGPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFVKGYAPSITRLY---MKN----------TMPH 240 (423)
Q Consensus 183 ~~~~~~dln~~~p~v~~~~~~~l~~w~~---------~~gvDGfR~D~a~~~~~~~~~~~---~~~----------~~p~ 240 (423)
.+.-.-|.|-+||.||.+...|+.+++. +..+||||+||+.+|..+.++.. .++ .+.+
T Consensus 139 EfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~H 218 (809)
T PF02324_consen 139 EFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANKH 218 (809)
T ss_dssp S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCTC
T ss_pred eeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhhh
Confidence 3444458999999999999999999997 66799999999999998876654 221 1457
Q ss_pred eEEEeecCCCcccCCCccchhhhHHHHHHHHHHHHhCCccccccchhhhHhhhC---------------CCCc-------
Q 045962 241 FTVAEKWDSLSYRQDGKLDARQDAHRRNLKYWVQAAGRAVTAFDFTTKGILQAA---------------PPGF------- 298 (423)
Q Consensus 241 ~~~gE~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~---------------~~~~------- 298 (423)
+-+-|.|+.. ++ .|++..++....+|..++..+..+ ..++
T Consensus 219 lSilE~ws~n------d~------------~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~ 280 (809)
T PF02324_consen 219 LSILEAWSSN------DP------------DYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDS 280 (809)
T ss_dssp --EESSSTTT------HH------------HHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE-
T ss_pred heeeeccccC------Ch------------HHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCC
Confidence 7888999752 11 222333333333444433322211 0000
Q ss_pred cCCCCCCceeccCCCCCCC-----------C-C---C----------------------CCCCChhhHHHHHHHHHcC-C
Q 045962 299 IGLLPQNAVTFIDNHDTGS-----------T-Q---R----------------------LWPFPSAKVMLGYAYILTH-P 340 (423)
Q Consensus 299 ~~~~~~~~~~f~~nHD~~r-----------~-~---~----------------------~~~~~~~~~~~a~a~~~~~-p 340 (423)
....+.....|+.+||.+- . . . ...+....+..+||+||+- .
T Consensus 281 ~en~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtNKD 360 (809)
T PF02324_consen 281 TENEAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTNKD 360 (809)
T ss_dssp -SSESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-SS
T ss_pred cCCcccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhCCC
Confidence 0112345689999999932 0 0 0 0011223477899999996 5
Q ss_pred CceEEecCCCC-------Cc--hhHHHHHHHHHHHHhcCcccccc-eE--EEee-cCCEEEEEE
Q 045962 341 GTPSIFYDHLF-------DW--DLKKEIGKLAAIRTKNGINTTSR-VN--ILAS-QSDLYVAAI 391 (423)
Q Consensus 341 G~P~iy~G~~~-------~w--~~~~~~~~L~~lR~~~~~l~~g~-~~--~~~~-~~~~~~~~r 391 (423)
.+|.|||||.+ .- ..++.|..|++-|.++.+ .|+ +. .+.. .++++.-.|
T Consensus 361 TVPRVYYGDLYtDdGQYMa~KSpYyDaI~tLLKaRikYva--GGQtM~~~~~~~~~~~vLtSVR 422 (809)
T PF02324_consen 361 TVPRVYYGDLYTDDGQYMATKSPYYDAITTLLKARIKYVA--GGQTMAVTYLNGDNSGVLTSVR 422 (809)
T ss_dssp SEEEEEHHHHBESSSSTTTSB-TTHHHHHHHHHHHHHH----S-EEEEE--EEETTTSEEEEEE
T ss_pred CCceEEecccccccchhhhhcCchHHHHHHHHHHHHHhhc--CCceeeeecccCCCCceEEEEe
Confidence 99999999743 22 489999999999999865 232 11 2233 447888877
No 45
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.92 E-value=1.4e-08 Score=98.17 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=91.1
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
++|++....+.. -.+-+.+.+.|+.|+++|+|+|++-=- ..+...++| -+.|...+...
T Consensus 3 RgvWi~~~~~~~----~~~~~~~~~~l~~l~~~~~N~V~~qVr----~~gda~Y~S------------~~~p~s~~~~g- 61 (311)
T PF02638_consen 3 RGVWISTVANID----WPSKEQIDEMLDDLKSAGFNAVFVQVR----PRGDALYPS------------DIEPWSGYLTG- 61 (311)
T ss_pred EEEEEeecCCCC----CCCHHHHHHHHHHHHHcCCCEEEEEEE----eCcEEEecc------------cccccccccCC-
Confidence 456666665321 125678999999999999999975211 122222233 12221111111
Q ss_pred CCCC--CHHHHHHHHHHHHHcCCEEEEEEecccCCCCCC---CCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 045962 103 SSYG--SQNELKSLIQAFNKKGIKCLADIVINHRTAEKK---DRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGH 177 (423)
Q Consensus 103 ~~~G--t~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (423)
...+ +.+-|+.+|++||++||+|..-+.++..+.... ..++.|..- ...+|... +.++
T Consensus 62 ~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~--------~~~~--- 124 (311)
T PF02638_consen 62 KQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAV------NHPGWVRT--------YEDA--- 124 (311)
T ss_pred CCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhhee------cCCCceee--------cccC---
Confidence 1111 367899999999999999999996654433210 011111100 00111100 0000
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 045962 178 PDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 221 (423)
Q Consensus 178 ~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~ 221 (423)
.....-||..+|+||+++++.++..++.|+|||+.+|-
T Consensus 125 ------~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 125 ------NGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDD 162 (311)
T ss_pred ------CCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 01112299999999999999999999999999999994
No 46
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.90 E-value=4.3e-09 Score=103.74 Aligned_cols=83 Identities=16% Similarity=0.253 Sum_probs=74.0
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCC------HHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS------QNELK 112 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt------~~~l~ 112 (423)
-|.+..+.++|..++++|+|.|+++|+. +- |.+...|++.|...+| |.+.. .++++
T Consensus 18 ~G~~~~W~~~l~~~~~~GYNmIHftPlq----------~~-------G~S~S~YSI~Dql~~~-~~~~~~~~~~~~~~v~ 79 (423)
T PF14701_consen 18 MGPFSDWEKHLKVISEKGYNMIHFTPLQ----------ER-------GESNSPYSIYDQLKFD-PDFFPPGKESTFEDVK 79 (423)
T ss_pred cCCHhHHHHHHHHHHHcCCcEEEecccc----------cC-------CCCCCCccccchhhcC-hhhcCCCccccHHHHH
Confidence 4899999999999999999999999999 43 4677789999999999 77653 47999
Q ss_pred HHHHHHH-HcCCEEEEEEecccCCCCCC
Q 045962 113 SLIQAFN-KKGIKCLADIVINHRTAEKK 139 (423)
Q Consensus 113 ~lv~~aH-~~Gi~VilD~V~nh~~~~~~ 139 (423)
++|.+++ +.||.+|.|+|+||++.+++
T Consensus 80 ~~v~~~~~~~~ll~~~DvV~NHtA~nS~ 107 (423)
T PF14701_consen 80 EFVKEAEKKYGLLSMTDVVLNHTANNSP 107 (423)
T ss_pred HHHHHHHHHcCceEEEEEeeccCcCCCh
Confidence 9999995 79999999999999999874
No 47
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=1.2e-06 Score=91.39 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=73.3
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCC------CHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYG------SQNELK 112 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~G------t~~~l~ 112 (423)
.|.|.....+|.-+|+.|.|.|+++|+.| - +.+...|...|...++ +.+- +.||.+
T Consensus 138 LGpl~eWeprL~va~e~gYNmIHfTPlqe----------l-------G~S~S~YSl~dql~~~-~~~~~~~~k~s~eDV~ 199 (1521)
T KOG3625|consen 138 LGPLDEWEPRLRVAKESGYNMIHFTPLQE----------L-------GLSRSCYSLADQLELN-PDFSRPNRKYSFEDVG 199 (1521)
T ss_pred cCChhhhhHHHHHHHHcCCceEeeeeHHH----------h-------ccCCCccchHhhhhcC-hhhhccCCCCCHHHHH
Confidence 68899999999999999999999999994 3 4677789999999999 7775 799999
Q ss_pred HHHHHHHH-cCCEEEEEEecccCCCCC
Q 045962 113 SLIQAFNK-KGIKCLADIVINHRTAEK 138 (423)
Q Consensus 113 ~lv~~aH~-~Gi~VilD~V~nh~~~~~ 138 (423)
+||+.+|+ -||--|-|+|+||++.++
T Consensus 200 ~lV~~l~rewnvlsi~DvV~NHtAnns 226 (1521)
T KOG3625|consen 200 QLVEKLKREWNVLSITDVVYNHTANNS 226 (1521)
T ss_pred HHHHHHHhhcCeeeeehhhhhccccCC
Confidence 99999986 589999999999999977
No 48
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.65 E-value=5.2e-08 Score=99.13 Aligned_cols=103 Identities=23% Similarity=0.360 Sum_probs=62.8
Q ss_pred CceeeeeeecccCC----CCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCcccccccccccc-CCCCCCCCccccc
Q 045962 23 PTILFQGFNWESCN----KKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAY-SHASLAGYMPGRL 97 (423)
Q Consensus 23 ~~v~~~~F~~d~~~----~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~-~~~~~~GY~~~d~ 97 (423)
.+||+.+|+ ..-. +.-=+-..|.+..+-+|++||+..||.|-+ .+.....+ ...-.-||+-+|-
T Consensus 564 SqvIYEgFS-NFQ~~~t~~~eytN~~IA~Na~lFk~wGITsFemAPQY----------~Ss~D~tFLDSiiqNGYAFtDR 632 (809)
T PF02324_consen 564 SQVIYEGFS-NFQDFPTTPSEYTNVVIAKNADLFKSWGITSFEMAPQY----------RSSTDGTFLDSIIQNGYAFTDR 632 (809)
T ss_dssp T-EEEE----TTB---SSGGGSHHHHHHHTHHHHHHTTEEEEE----S-----------B--SSSSHHHHTT-SSSBS-T
T ss_pred cchhhcccc-ccccCCCChHHHHHHHHHHhHHHHHhcCcceeeeCcce----------ecCCCCcchhhHhhcCccccch
Confidence 479998886 3110 001234668888999999999999999988 44000000 0011249999999
Q ss_pred CCCC---CCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCC
Q 045962 98 YDLH---ASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTA 136 (423)
Q Consensus 98 ~~id---~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~ 136 (423)
|++. |..||+.|+|+..|+++|+.||+||.|+|++.+-.
T Consensus 633 YDLg~s~ptKYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 633 YDLGMSKPTKYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp T-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred hhhcCCCCCCCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 9988 89999999999999999999999999999998853
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.60 E-value=4.5e-07 Score=76.15 Aligned_cols=129 Identities=15% Similarity=0.234 Sum_probs=81.0
Q ss_pred HhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 045962 46 KKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKC 125 (423)
Q Consensus 46 ~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~V 125 (423)
.+-+++||++|+|+|-+.- ++ -+.+-|-|+..-... |.++ .+-|+++|++||++||+|
T Consensus 3 ~~~~~~lk~~~v~si~i~a------------~~--------h~g~ayYPt~~~~~h-p~L~-~Dllge~v~a~h~~Girv 60 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFA------------KC--------HGGYAYYPTKVGPRH-PGLK-RDLLGEQVEACHERGIRV 60 (132)
T ss_pred HHHHHHHHHhCCCEEEEEc------------cc--------ccEEEEccCCCCcCC-CCCC-cCHHHHHHHHHHHCCCEE
Confidence 3457899999999997422 11 112336666666667 8887 788999999999999999
Q ss_pred EEEEecccCCCCCCCCcccceeccC-CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 045962 126 LADIVINHRTAEKKDRRGIWCIFEG-GTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDW 204 (423)
Q Consensus 126 ilD~V~nh~~~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~ 204 (423)
++=+-++ .-..--..+++|..-+. +++.....+ .......+..++| .++++++.
T Consensus 61 ~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~-----------------------~~~~~~~~c~ns~-Y~e~~~~~ 115 (132)
T PF14871_consen 61 PAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERF-----------------------GYPGWYTCCLNSP-YREFLLEQ 115 (132)
T ss_pred EEEEeee-cChHHHHhCCceeeECCCCCCcCCCCc-----------------------CCCCceecCCCcc-HHHHHHHH
Confidence 9877666 32221234455554322 221000000 0000111333345 45899999
Q ss_pred HHHHHHhcCCCeEEecc
Q 045962 205 MNWLKTEIGFDGWRFDF 221 (423)
Q Consensus 205 l~~w~~~~gvDGfR~D~ 221 (423)
++..+++|.+||+=+|.
T Consensus 116 i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 116 IREILDRYDVDGIFFDI 132 (132)
T ss_pred HHHHHHcCCCCEEEecC
Confidence 99999999999998874
No 50
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.54 E-value=1.2e-06 Score=86.34 Aligned_cols=152 Identities=17% Similarity=0.119 Sum_probs=90.2
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
..+=..+.+.|+.|+.||||+|+. .. ...+...+++. .....++.+. ...++ ++-+-|+.+|++|
T Consensus 60 ~~~~~el~~~ld~l~~ln~NTv~~--qV--~~~G~~lypS~------~~p~s~~~~~-~~~~~----~g~DpLa~~I~~A 124 (418)
T COG1649 60 LFQRQELKDILDDLQKLNFNTVYP--QV--WNDGDALYPSA------VLPWSDGLPG-VLGVD----PGYDPLAFVIAEA 124 (418)
T ss_pred cccHHHHHHHHHHHHHcCCceeEE--EE--ecCcccccccc------ccccccCcCc-ccCCC----CCCChHHHHHHHH
Confidence 455678999999999999999983 22 11111111220 0011111111 12233 3457899999999
Q ss_pred HHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 045962 119 NKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQ 198 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~ 198 (423)
|++||+|+.-+-+-.++.+........- +.......+|-... +++.. ...=||-.+|+||
T Consensus 125 Hkr~l~v~aWf~~~~~a~~~s~~~~~~p---~~~~~~~~~~~~~~--------~~~~~---------~~~~ldPg~Pevq 184 (418)
T COG1649 125 HKRGLEVHAWFNPYRMAPPTSPLTKRHP---HWLTTKRPGWVYVR--------HQGWG---------KRVWLDPGIPEVQ 184 (418)
T ss_pred HhcCCeeeechhhcccCCCCChhHhhCC---CCcccCCCCeEEEe--------cCCce---------eeeEeCCCChHHH
Confidence 9999999999999988875421100000 00000001111000 00100 1222899999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEecccCCC
Q 045962 199 KELSDWMNWLKTEIGFDGWRFDFVKGY 225 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~D~a~~~ 225 (423)
++|.+.+...++.|.|||+.+|---..
T Consensus 185 ~~i~~lv~evV~~YdvDGIQfDd~fy~ 211 (418)
T COG1649 185 DFITSLVVEVVRNYDVDGIQFDDYFYY 211 (418)
T ss_pred HHHHHHHHHHHhCCCCCceecceeecc
Confidence 999999999999999999999865444
No 51
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=98.29 E-value=5.5e-05 Score=77.63 Aligned_cols=44 Identities=16% Similarity=-0.056 Sum_probs=37.6
Q ss_pred CceeeeeeecccCCCCCCcHH-HHHhhhhHHHHcCCcEEEcCCccc
Q 045962 23 PTILFQGFNWESCNKKGGWYN-FLKKRIPDIASAGITHVWLSSTFS 67 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~-~~~~~L~ylk~lGi~~I~l~Pi~~ 67 (423)
.+|++|.|+. ...-+.|||- ++.+-++.+++.|++.|+|+|+..
T Consensus 7 ~Gv~~~l~SL-~~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~ 51 (497)
T PRK14508 7 SGILLHITSL-PGSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGP 51 (497)
T ss_pred eEEEeccccC-CCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 4788888886 3334689995 999999999999999999999985
No 52
>PLN02635 disproportionating enzyme
Probab=98.07 E-value=0.00011 Score=75.52 Aligned_cols=45 Identities=13% Similarity=-0.063 Sum_probs=37.0
Q ss_pred CceeeeeeecccCCCCCCcHHHHH-hhhhHHHHcCCcEEEcCCcccc
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLK-KRIPDIASAGITHVWLSSTFSL 68 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~-~~L~ylk~lGi~~I~l~Pi~~~ 68 (423)
.+|++|.|+..++ -+.|||-... +-++.+++.|.+.++|+|+.+.
T Consensus 30 ~Gvll~l~SLps~-~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt 75 (538)
T PLN02635 30 AGILLHPTSLPGP-YGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPP 75 (538)
T ss_pred eEEEEccccCCCC-CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3789999986643 4579998754 7899999999999999999854
No 53
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=97.85 E-value=4.7e-05 Score=59.41 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCcccccceEEEe----ecCCEEEEEE---CCEEEEEECCCCCcCccCC--cCeEEeeccC
Q 045962 358 EIGKLAAIRTKNGINTTSRVNILA----SQSDLYVAAI---DDKIITKIGPKMDLRNLIP--RNFKVATSGK 420 (423)
Q Consensus 358 ~~~~L~~lR~~~~~l~~g~~~~~~----~~~~~~~~~r---~~~~lv~in~~~~~~~~~~--~~~~~~~~g~ 420 (423)
+||+||++|+++|+|..|+...+. .++.++++.| ++.++|++|.+.. +..+| ..++.+.+++
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~-~~~~~~~~~~~~l~~s~ 71 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE-PVTVPEGPWGEVLFSSE 71 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS--EEEETSCCEEEEEECS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC-cEEccCCCCCeEEEcCC
Confidence 689999999999999999877665 3567777777 4688888887653 34444 3566666544
No 54
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=97.76 E-value=0.00014 Score=74.97 Aligned_cols=29 Identities=24% Similarity=-0.024 Sum_probs=20.0
Q ss_pred CCCcH-HHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 38 KGGWY-NFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 38 ~~G~~-~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
+.||| .++.+-++.+++.|+..++|.|+.
T Consensus 13 GIGDfg~dl~~~~d~~~~~G~~i~qllpl~ 42 (496)
T PF02446_consen 13 GIGDFGDDLYQFIDWAAEAGQSIWQLLPLN 42 (496)
T ss_dssp SS--SSHHHHHHHHHHHHCT--EEE----S
T ss_pred ceecHHHHHHHHHHHHHHcCCCeecccccc
Confidence 58999 999999999999999999999999
No 55
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.74 E-value=0.00033 Score=67.94 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=87.1
Q ss_pred CcHHHHHhhhhHHHHcC--CcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAG--ITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQA 117 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lG--i~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~ 117 (423)
.+-+.+.+.++.+++.| ++.|+|-.=+ .. +|.-.| +..|+.+|-+ .++|+++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w----------~~------------~~~~~~-f~~d~~~FPd---~~~~i~~ 74 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFW----------MK------------EFQWCD-FEFDPDRFPD---PEGMLSR 74 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccc----------cc------------CCccee-eEECcccCCC---HHHHHHH
Confidence 35678888999999999 5567665433 11 122122 5555357754 6899999
Q ss_pred HHHcCCEEEEEEecccCCCCCCC----CcccceeccC-CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045962 118 FNKKGIKCLADIVINHRTAEKKD----RRGIWCIFEG-GTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDH 192 (423)
Q Consensus 118 aH~~Gi~VilD~V~nh~~~~~~~----~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 192 (423)
+|++|++|++-+.+ +++.+++. ....++.... +++.....| .....-+|+
T Consensus 75 l~~~G~~~~~~~~P-~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w------------------------~g~~~~~Df 129 (308)
T cd06593 75 LKEKGFKVCLWINP-YIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLW------------------------QPGMGIIDF 129 (308)
T ss_pred HHHCCCeEEEEecC-CCCCCchhHHHHHHCCeEEECCCCCeeeeccc------------------------CCCcccccC
Confidence 99999999999987 56554421 0111211110 000000001 011123899
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH
Q 045962 193 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 227 (423)
Q Consensus 193 ~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~ 227 (423)
.||++++.+.+.++.+++ .|||||-+|....+|.
T Consensus 130 tnp~a~~w~~~~~~~~~~-~Gid~~~~D~~e~~p~ 163 (308)
T cd06593 130 TNPDACKWYKDKLKPLLD-MGVDCFKTDFGERIPT 163 (308)
T ss_pred CCHHHHHHHHHHHHHHHH-hCCcEEecCCCCCCCc
Confidence 999999999999999987 9999999998877654
No 56
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=97.69 E-value=0.00086 Score=76.06 Aligned_cols=44 Identities=16% Similarity=0.066 Sum_probs=38.4
Q ss_pred ceeeeeeecccCC-CCCCcHHHHHhhhhHHHHcCCcEEEcCCccc
Q 045962 24 TILFQGFNWESCN-KKGGWYNFLKKRIPDIASAGITHVWLSSTFS 67 (423)
Q Consensus 24 ~v~~~~F~~d~~~-~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~ 67 (423)
++.+|.|+..+.. -+.|||.++.+-++.+++.|.+.|+|+|+..
T Consensus 726 Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~ 770 (1221)
T PRK14510 726 GILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHP 770 (1221)
T ss_pred EEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 6788999877643 3579999999999999999999999999885
No 57
>smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet.
Probab=97.68 E-value=0.00015 Score=51.59 Aligned_cols=51 Identities=57% Similarity=0.972 Sum_probs=46.8
Q ss_pred cccceEEEeecCCEEEEEECCEEEEEECCCCCcCccCCcCeEEeeccCCCC
Q 045962 373 TTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRNLIPRNFKVATSGKDYA 423 (423)
Q Consensus 373 ~~g~~~~~~~~~~~~~~~r~~~~lv~in~~~~~~~~~~~~~~~~~~g~~~~ 423 (423)
...+.+.+..+.++|+...++++++-|+...+.+.++|++|++..+|++||
T Consensus 7 ~~S~v~I~~Ae~dlY~A~Id~kv~~KiGp~~~~~~~~P~~w~~a~sG~~ya 57 (61)
T smart00810 7 SRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIPSGFHLAASGNDYA 57 (61)
T ss_pred CCCceEEEEecCCcEEEEeCCeEEEEECCCCCcCccCCCCCEEEEECCCEE
Confidence 345678888999999999999999999999999999999999999999997
No 58
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.67 E-value=0.00055 Score=68.23 Aligned_cols=139 Identities=18% Similarity=0.182 Sum_probs=84.4
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+-+.+.+.++.++++|++.+.|== +|+..+ .......|.+. +|+.+|- +.|+.|++.+|+
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDD---------GW~~~r----~~d~~~~GdW~-----~~~~kFP--~Gl~~l~~~i~~ 115 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDD---------GWFGGR----DDDNAGLGDWE-----PDPKKFP--NGLKPLADYIHS 115 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-S---------SSBCTE----STTTSTTSBEC-----BBTTTST--THHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcC---------cccccc----CCCcccCCcee-----EChhhhC--CcHHHHHHHHHH
Confidence 345677888999999999886521 222320 00012223332 3335664 459999999999
Q ss_pred cCCEEEEEEecccCCCCCC--CCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 045962 121 KGIKCLADIVINHRTAEKK--DRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQ 198 (423)
Q Consensus 121 ~Gi~VilD~V~nh~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~ 198 (423)
+||+.=+-+-+--++.+++ ..+++|....++.+ . .....+--||+++|+|+
T Consensus 116 ~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~------------------------~---~~~r~~~vLD~~~pev~ 168 (394)
T PF02065_consen 116 LGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRP------------------------P---TLGRNQYVLDLSNPEVR 168 (394)
T ss_dssp TT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE----------------------------ECBTTBEEB-TTSHHHH
T ss_pred CCCeEEEEeccccccchhHHHHhCccceeecCCCC------------------------C---cCcccceEEcCCCHHHH
Confidence 9999999999887776663 12233332111000 0 00011222899999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEecccCCCC
Q 045962 199 KELSDWMNWLKTEIGFDGWRFDFVKGYA 226 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~D~a~~~~ 226 (423)
+++.+.+..++++.|||.+.+|.-..+.
T Consensus 169 ~~l~~~i~~ll~~~gidYiK~D~n~~~~ 196 (394)
T PF02065_consen 169 DYLFEVIDRLLREWGIDYIKWDFNRDIT 196 (394)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEE-TS-TT
T ss_pred HHHHHHHHHHHHhcCCCEEEeccccCCC
Confidence 9999999999889999999999877664
No 59
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.65 E-value=0.00071 Score=65.46 Aligned_cols=133 Identities=14% Similarity=0.214 Sum_probs=82.8
Q ss_pred cHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
+-+.+.+.++.+++.|| +.|+|---+ .. ..| | +..|+.+|-+ .++|++++
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~iD~~w----------~~----------~~g----~-f~~d~~~FPd---p~~mi~~l 79 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEIDDNW----------ET----------CYG----D-FDFDPTKFPD---PKGMIDQL 79 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEeCCCc----------cc----------cCC----c-cccChhhCCC---HHHHHHHH
Confidence 56788999999999995 466543222 11 111 2 4455246753 78999999
Q ss_pred HHcCCEEEEEEecccCCCCCCC----CcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045962 119 NKKGIKCLADIVINHRTAEKKD----RRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLN 194 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 194 (423)
|++|+++++-+-+ +++.+++. ....++.-.. ++..............-+|+.|
T Consensus 80 ~~~G~k~~l~i~P-~i~~~s~~~~e~~~~g~~vk~~----------------------~g~~~~~~~~w~g~~~~~Dftn 136 (303)
T cd06592 80 HDLGFRVTLWVHP-FINTDSENFREAVEKGYLVSEP----------------------SGDIPALTRWWNGTAAVLDFTN 136 (303)
T ss_pred HHCCCeEEEEECC-eeCCCCHHHHhhhhCCeEEECC----------------------CCCCCcccceecCCcceEeCCC
Confidence 9999999999988 45444320 0111111110 0000000000001112389999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 045962 195 PRVQKELSDWMNWLKTEIGFDGWRFDFVKG 224 (423)
Q Consensus 195 p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~ 224 (423)
|++++.+.+.++.++.+.|||||-+|....
T Consensus 137 p~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 137 PEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 999999999999999679999999998764
No 60
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.46 E-value=0.00096 Score=64.23 Aligned_cols=136 Identities=19% Similarity=0.283 Sum_probs=84.3
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCC---Cccccc--CCCCCCCCCCHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAG---YMPGRL--YDLHASSYGSQNELKSL 114 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~G---Y~~~d~--~~id~~~~Gt~~~l~~l 114 (423)
|+-..+.+.|+.+++.|+|+|- .+. ..++| |....- ..+. ..-....++++|
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavV----IDv------------------Kdd~G~i~y~s~~~~~~~~g-a~~~~i~D~~~l 66 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVV----IDV------------------KDDDGNITYDSQVPLAREIG-AVKPYIKDLKAL 66 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEE----EEE------------------ecCCceEEecCCCchhhhcc-cccccccCHHHH
Confidence 4556677889999999999995 322 22333 221110 1111 111124679999
Q ss_pred HHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045962 115 IQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLN 194 (423)
Q Consensus 115 v~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 194 (423)
+++||++||.+|.=+|.=- |.. -+...++|.- ...++..|.+..+.. =+|..+
T Consensus 67 ~~~l~e~gIY~IARIv~Fk---D~~------------la~~~pe~av--~~~~G~~w~d~~~~~----------WvnP~~ 119 (316)
T PF13200_consen 67 VKKLKEHGIYPIARIVVFK---DPV------------LAEAHPEWAV--KTKDGSVWRDNEGEA----------WVNPYS 119 (316)
T ss_pred HHHHHHCCCEEEEEEEEec---ChH------------HhhhChhhEE--ECCCCCcccCCCCCc----------cCCCCC
Confidence 9999999999999998721 110 0011122321 112223343322211 288889
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 045962 195 PRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 226 (423)
Q Consensus 195 p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~ 226 (423)
++||++.++..+...+ .|+|.+-+|-+..-.
T Consensus 120 ~evw~Y~i~IA~Eaa~-~GFdEIqfDYIRFP~ 150 (316)
T PF13200_consen 120 KEVWDYNIDIAKEAAK-LGFDEIQFDYIRFPD 150 (316)
T ss_pred HHHHHHHHHHHHHHHH-cCCCEEEeeeeecCC
Confidence 9999999999999997 999999999876554
No 61
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=97.18 E-value=0.0045 Score=65.56 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=79.9
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+-+.+.+.|+.||++|+|+|+|-.+-.- +.. +....-|-|.++..+-.+-|.... =. .+|+
T Consensus 332 q~~~L~~lLdrlk~~G~ntV~lqafadp--~gd------------~~~~s~yfP~~~lp~r~d~f~~~a---w~--l~~r 392 (671)
T PRK14582 332 QDRNIDVLIQRVKDMQISTVYLQAFADP--DGD------------GLVKELYFPNRLLPMRADLFNRVA---WQ--LRTR 392 (671)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCC--CCC------------ccccccccCccccccccCCcCHHH---HH--HHHh
Confidence 3577888899999999999999876611 111 122223444443332213333222 12 2999
Q ss_pred cCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 045962 121 KGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKE 200 (423)
Q Consensus 121 ~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~ 200 (423)
+|++|...+.+--.+-+.+.+... .+... .. .......+ ...|+..+|+||+.
T Consensus 393 ~~v~v~AWmp~~~~~~~~~~~~~~-------------~~~~~----------~~--~~~~~~~~--~~rl~P~~pe~r~~ 445 (671)
T PRK14582 393 AGVNVYAWMPVLSFDLDPTLPRVK-------------RLDTG----------EG--KAQIHPEQ--YRRLSPFDDRVRAQ 445 (671)
T ss_pred hCCEEEEeccceeeccCCCcchhh-------------hcccc----------CC--ccccCCCC--CcCCCCCCHHHHHH
Confidence 999999999886554321100000 00000 00 00000001 12388999999999
Q ss_pred HHHHHHHHHHhcCCCeEEecc
Q 045962 201 LSDWMNWLKTEIGFDGWRFDF 221 (423)
Q Consensus 201 ~~~~l~~w~~~~gvDGfR~D~ 221 (423)
|.+....+.+.+.|||+-+|-
T Consensus 446 i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 446 VGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred HHHHHHHHHHhCCCceEEecc
Confidence 999999999988999999954
No 62
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.99 E-value=0.0061 Score=63.23 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=78.8
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCcc-ccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTF-SLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~-~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
+.....+.|+.|+..-||.|+.==.+ .|. .++... . ...+ ..+.++- .|-=..+.+|.+|++||
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~---~Pl~~~---------~-~~~~-~~w~D~~-~r~i~~~~Vk~yI~~ah 180 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHH---KPLPGT---------N-GQPD-QTWTDWA-NRQISTSTVKDYINAAH 180 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTT---B-S-SS---------S--EEE--TT-TTT---EEEHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccC---CcCCCC---------C-Cchh-hhhhhhc-CCEehHHHHHHHHHHHH
Confidence 57788899999999999999853222 000 000000 0 0000 1133333 33334789999999999
Q ss_pred HcCCEEEEEEecccCCCCC--CCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 045962 120 KKGIKCLADIVINHRTAEK--KDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRV 197 (423)
Q Consensus 120 ~~Gi~VilD~V~nh~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v 197 (423)
+.||++|.=.-+.-...+- .+....|..|........ ... .- ...|. ..+-=+|..|+.=
T Consensus 181 ~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~---~~~-~l--~~~w~------------s~lyl~dP~N~~W 242 (559)
T PF13199_consen 181 KYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQ---DTY-DL--PDGWP------------SDLYLMDPGNPEW 242 (559)
T ss_dssp HTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB----EE-EE--TT-E--------------EEEEB-TT-HHH
T ss_pred HcCcceehhHhhhccccCcccccCCchhhhhhccCCCcc---cee-ec--Ccccc------------cceEEecCCCHHH
Confidence 9999999865544333221 124555776665322100 000 00 00000 0011278999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecccCC
Q 045962 198 QKELSDWMNWLKTEIGFDGWRFDFVKG 224 (423)
Q Consensus 198 ~~~~~~~l~~w~~~~gvDGfR~D~a~~ 224 (423)
|++|++-+...++.+|+||+.+|....
T Consensus 243 Q~yI~~q~~~~~~~~gFDG~hlDq~G~ 269 (559)
T PF13199_consen 243 QNYIINQMNKAIQNFGFDGWHLDQLGN 269 (559)
T ss_dssp HHHHHHHHHHHHHHHT--EEEEE-S--
T ss_pred HHHHHHHHHHHHHccCCceEeeeccCC
Confidence 999999999999999999999998774
No 63
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.93 E-value=0.0044 Score=60.93 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 045962 189 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 225 (423)
Q Consensus 189 dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~ 225 (423)
-+|+.||++++...+.++.++++.|||||-+|+...+
T Consensus 153 ~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 153 MLDFTNPEAAQWWMEKRRYLVDELGIDGFKTDGGEHV 189 (340)
T ss_pred eecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCcc
Confidence 3899999999999999999997799999999987643
No 64
>PRK09936 hypothetical protein; Provisional
Probab=96.76 E-value=0.007 Score=56.81 Aligned_cols=187 Identities=17% Similarity=0.225 Sum_probs=107.0
Q ss_pred CcchhhHHHHHHhhCCCCCCCCCceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCcccccccc
Q 045962 1 MSPLCFLCFLLLSVFPPFTSPSPTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSII 80 (423)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~ 80 (423)
|+++..+| +++++.++++|++.++++|.++.|+.= +-....+.+..++.+||+++.+ . |+.
T Consensus 1 m~~~~~~~-l~~l~~~~~~~a~~g~F~Qp~n~d~~~----~~~qWq~~~~~~~~~G~~tLiv---Q---------Wt~-- 61 (296)
T PRK09936 1 MRKFIFVL-LTLLLVSPFSQAMKGIFYQPQNRDSQV----TDTQWQGLWSQLRLQGFDTLVV---Q---------WTR-- 61 (296)
T ss_pred ChhHHHHH-HHHHHcCchhhccccceeccccccCCC----CHHHHHHHHHHHHHcCCcEEEE---E---------eee--
Confidence 78888777 555555666666679999999876443 3677888899999999999962 2 022
Q ss_pred ccccCCCCCCCCcccccCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEEEecccCCCCCC--CCcc--cceec-cCCCCC
Q 045962 81 HQAYSHASLAGYMPGRLYDLHASSYGS-QNELKSLIQAFNKKGIKCLADIVINHRTAEKK--DRRG--IWCIF-EGGTPD 154 (423)
Q Consensus 81 ~~~~~~~~~~GY~~~d~~~id~~~~Gt-~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~--~~~~--~~~~f-~~~~~~ 154 (423)
| -+ +.||+ .-.|.+++++|++.||+|++=+-++---..+. +..+ .|..- -+....
T Consensus 62 -----------y-------G~-~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~q~~~~d~~~~~~yl~~~l~~~~~ 122 (296)
T PRK09936 62 -----------Y-------GD-ADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFFMHQKQDGAALESYLNRQLGASLQ 122 (296)
T ss_pred -----------c-------cC-CCcccchHHHHHHHHHHHHcCCEEEEcccCChHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 1 22 44554 45699999999999999999887762211110 0000 00000 000000
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCC------eEEecccCCCCH
Q 045962 155 KRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPD-IDHLNPRVQKELSDWMNWLKTEIGFD------GWRFDFVKGYAP 227 (423)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-ln~~~p~v~~~~~~~l~~w~~~~gvD------GfR~D~a~~~~~ 227 (423)
....|....+....++.++.-+| .+|..++-|+.+...+...+. .++ .+-.=....+.+
T Consensus 123 ------------qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~--~l~~~~kPv~ISay~~g~~sP 188 (296)
T PRK09936 123 ------------QARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQR--LIDVSAKPVHISAFFAGNMSP 188 (296)
T ss_pred ------------HHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHH--hCCCCCCCeEEEeecccCCCh
Confidence 00001111111122333444444 678888888888888877765 444 222222234456
Q ss_pred HHHHHHHHhcCC
Q 045962 228 SITRLYMKNTMP 239 (423)
Q Consensus 228 ~~~~~~~~~~~p 239 (423)
+.+..+++...+
T Consensus 189 ~~l~~Wl~~l~~ 200 (296)
T PRK09936 189 DGYRQWLEQLKA 200 (296)
T ss_pred HHHHHHHHHHhh
Confidence 666777666544
No 65
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.71 E-value=0.0057 Score=59.52 Aligned_cols=146 Identities=16% Similarity=0.261 Sum_probs=82.5
Q ss_pred cHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcc-cccCCCCCCCCCCHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMP-GRLYDLHASSYGSQNELKSLIQA 117 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~-~d~~~id~~~~Gt~~~l~~lv~~ 117 (423)
+-+.+.+.++.+++.|| ++|||- .. .. .....+|+.. .+ +..|+.+|- +.++||++
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw----------~~------~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~ 79 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DW----------TG------RRETSFGDRLWWN-WEWDPERYP---GLDELIEE 79 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cc----------cC------cccccccceeeee-eEEChhhCC---CHHHHHHH
Confidence 67899999999999876 456653 22 11 0011223321 12 355534664 47899999
Q ss_pred HHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 045962 118 FNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRV 197 (423)
Q Consensus 118 aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v 197 (423)
+|++|++|++-+.+- +..++.. + |+.... .++ +... .++.. +.....-....-+|+.||++
T Consensus 80 Lh~~G~~~~~~i~P~-v~~~~~~----~--y~~~~~---~g~---~vk~-----~~g~~-~~~~~w~g~~~~~Dftnp~a 140 (317)
T cd06594 80 LKARGIRVLTYINPY-LADDGPL----Y--YEEAKD---AGY---LVKD-----ADGSP-YLVDFGEFDCGVLDLTNPAA 140 (317)
T ss_pred HHHCCCEEEEEecCc-eecCCch----h--HHHHHH---CCe---EEEC-----CCCCe-eeeccCCCCceeeecCCHHH
Confidence 999999999966643 4333211 0 111000 000 0000 00000 00000001112389999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 045962 198 QKELSDWMNWLKTEIGFDGWRFDFVKGYA 226 (423)
Q Consensus 198 ~~~~~~~l~~w~~~~gvDGfR~D~a~~~~ 226 (423)
++...+.++..+.+.|||||=+|+-..+|
T Consensus 141 ~~ww~~~~~~~~~~~Gvdg~w~D~~E~~p 169 (317)
T cd06594 141 RDWFKQVIKEMLLDLGLSGWMADFGEYLP 169 (317)
T ss_pred HHHHHHHHHHHhhhcCCcEEEecCCCCCC
Confidence 99999999988556999999999876544
No 66
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.59 E-value=0.026 Score=55.49 Aligned_cols=143 Identities=18% Similarity=0.295 Sum_probs=78.1
Q ss_pred cHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
+-+.+.+.++.+++.|| +.|||-.-+ .. +|. -+..|+.+|-+.. .++||+++
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~----------~~------------~~~---~f~~d~~~FPdp~-~~~mi~~L 75 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDY----------MD------------RRR---DFTLDPVRFPGLK-MPEFVDEL 75 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECccc----------cc------------Ccc---ceecccccCCCcc-HHHHHHHH
Confidence 35778888888888776 455543322 11 111 1334423443221 28999999
Q ss_pred HHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHH
Q 045962 119 NKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPF-GPAPDIDHLNPRV 197 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~p~v 197 (423)
|++|+||++-+.+.-. .+.. ...+..|+.+... ++ + + .+..+....+..+ ....-+|+.||++
T Consensus 76 ~~~G~k~~~~i~P~v~-~~~~--~~~~~~~~e~~~~---g~---~-v------~~~~g~~~~~~~w~g~~~~~Dftnp~a 139 (339)
T cd06602 76 HANGQHYVPILDPAIS-ANEP--TGSYPPYDRGLEM---DV---F-I------KNDDGSPYIGKVWPGYTVFPDFLNPNT 139 (339)
T ss_pred HHCCCEEEEEEeCccc-cCcC--CCCCHHHHHHHHC---Ce---E-E------ECCCCCEEEEEeCCCCCcCcCCCCHHH
Confidence 9999999998765433 2210 0011111110000 00 0 0 0000000000000 0112278999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecccCCC
Q 045962 198 QKELSDWMNWLKTEIGFDGWRFDFVKGY 225 (423)
Q Consensus 198 ~~~~~~~l~~w~~~~gvDGfR~D~a~~~ 225 (423)
++...+.++.++++.|||||=+|.....
T Consensus 140 ~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 140 QEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred HHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 9999999999888789999999987643
No 67
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=96.59 E-value=0.021 Score=56.22 Aligned_cols=129 Identities=16% Similarity=0.250 Sum_probs=77.1
Q ss_pred cHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
+-+.+.+.++.+++.|| ++|||-+-+ .. +|.. +..|+.+|- +.++|++++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~----------~~------------~~~~---f~~d~~~fP---dp~~m~~~l 73 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDY----------MD------------GYRV---FTWDKERFP---DPKELIKEL 73 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchh----------hC------------CCCc---eeeccccCC---CHHHHHHHH
Confidence 45778888999998886 456654333 11 2221 344523664 368999999
Q ss_pred HHcCCEEEEEEecccCCCCCC------CCcccceeccC-CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045962 119 NKKGIKCLADIVINHRTAEKK------DRRGIWCIFEG-GTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDID 191 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~------~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln 191 (423)
|++|++|++-+.+. +..+.. .....++.... +.+..-..|. + ...-+|
T Consensus 74 ~~~g~~~~~~~~P~-v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~-------------g-----------~~~~~D 128 (339)
T cd06604 74 HEQGFKVVTIIDPG-VKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWP-------------G-----------LSAFPD 128 (339)
T ss_pred HHCCCEEEEEEeCc-eeCCCCChHHHHHHHCCeEEECCCCCEEEEEecC-------------C-----------CccccC
Confidence 99999999887653 322210 00011111100 0000000010 0 011278
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 045962 192 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 223 (423)
Q Consensus 192 ~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~ 223 (423)
+.||++++...+.++.+++ .|||||-+|...
T Consensus 129 ftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 129 FTNPKVREWWGSLYKKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred CCChHHHHHHHHHHHHHhh-CCCceEeecCCC
Confidence 9999999999999999886 999999999764
No 68
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=96.56 E-value=0.029 Score=58.07 Aligned_cols=45 Identities=13% Similarity=-0.014 Sum_probs=36.7
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhh-hhHHHHcCCcEEEcCCcccc
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKR-IPDIASAGITHVWLSSTFSL 68 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~-L~ylk~lGi~~I~l~Pi~~~ 68 (423)
-+|++|.++..+. -+.|||..+... ++.+++.|....+|.|+++.
T Consensus 16 ~Gvll~l~SL~s~-~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~ 61 (513)
T TIGR00217 16 SGILLQLYSLPSE-WGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPA 61 (513)
T ss_pred eEEEeccccCCCC-CCccChHHHHHHHHHHHHHcCCcEEEeCCCCCC
Confidence 4789999987766 668999998844 68889999999999988853
No 69
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.52 E-value=0.016 Score=56.43 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=77.2
Q ss_pred HHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 42 YNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 42 ~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
=+.+.+.++.+++.|| ++|||-+=+ .. . .|-.-. -+..|+.+|- +.++||+++|
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~----------~~---------~-~~~~~~-~f~~d~~~FP---dp~~mi~~L~ 83 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGY----------TS---------I-EGGKRY-VFNWNKDRFP---DPAAFVAKFH 83 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccc----------cc---------c-CCCcee-eeecCcccCC---CHHHHHHHHH
Confidence 3578888889998886 566654322 11 0 010001 1344434564 4779999999
Q ss_pred HcCCEEEEEEecccCCCCCCC----CcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q 045962 120 KKGIKCLADIVINHRTAEKKD----RRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGP-APDIDHLN 194 (423)
Q Consensus 120 ~~Gi~VilD~V~nh~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~ 194 (423)
++|++|++-+.+- ++.+++. ....++.-.. ++.. +..+..+.+ ..-+|+.|
T Consensus 84 ~~g~k~~~~i~P~-i~~~~~~y~e~~~~g~~v~~~----------------------~g~~-~~~~~~w~g~~~~~Dftn 139 (317)
T cd06599 84 ERGIRLAPNIKPG-LLQDHPRYKELKEAGAFIKPP----------------------DGRE-PSIGQFWGGVGSFVDFTN 139 (317)
T ss_pred HCCCEEEEEeCCc-ccCCCHHHHHHHHCCcEEEcC----------------------CCCC-cceecccCCCeEeecCCC
Confidence 9999999977654 3333210 0111111000 0000 000111111 11388999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 045962 195 PRVQKELSDWMNWLKTEIGFDGWRFDFVKG 224 (423)
Q Consensus 195 p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~ 224 (423)
|++++...+.++..+.+.|||||=+|....
T Consensus 140 p~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 140 PEGREWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred hHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 999999999996555569999999998653
No 70
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.43 E-value=0.012 Score=57.33 Aligned_cols=133 Identities=13% Similarity=0.126 Sum_probs=76.4
Q ss_pred cHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
+-+.+.+.++.+++.|| +.|+|=--+ ....|+ .-+..|+.+|-. .++||+++
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~--------------------~~~~~~---~~f~~d~~~FPd---p~~mi~~L 75 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFY--------------------WPKQGW---GEWKFDPERFPD---PKAMVREL 75 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechh--------------------hcCCCc---eeEEEChhhCCC---HHHHHHHH
Confidence 56788888888888755 555543111 011111 124555346643 57899999
Q ss_pred HHcCCEEEEEEecccCCCCCCC----CcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045962 119 NKKGIKCLADIVINHRTAEKKD----RRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLN 194 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 194 (423)
|++|++|++-+.+. ++.+++. ....++.-.. ++.... .++-....-+|+.|
T Consensus 76 ~~~G~kv~~~i~P~-v~~~~~~y~e~~~~g~~v~~~----------------------~g~~~~--~~w~g~~~~~Dftn 130 (319)
T cd06591 76 HEMNAELMISIWPT-FGPETENYKEMDEKGYLIKTD----------------------RGPRVT--MQFGGNTRFYDATN 130 (319)
T ss_pred HHCCCEEEEEecCC-cCCCChhHHHHHHCCEEEEcC----------------------CCCeee--eeCCCCccccCCCC
Confidence 99999999966543 4433310 0111111100 000000 00001112389999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 045962 195 PRVQKELSDWMNWLKTEIGFDGWRFDFVKG 224 (423)
Q Consensus 195 p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~ 224 (423)
|++++...+.++..+.+.|||||=+|....
T Consensus 131 p~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 131 PEAREYYWKQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 999999888776544459999999999764
No 71
>PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A ....
Probab=96.38 E-value=0.0086 Score=42.37 Aligned_cols=47 Identities=55% Similarity=0.931 Sum_probs=38.5
Q ss_pred cccceEEEeecCCEEEEEECCEEEEEECCCCCcCccCC--cCeEEeeccCCCC
Q 045962 373 TTSRVNILASQSDLYVAAIDDKIITKIGPKMDLRNLIP--RNFKVATSGKDYA 423 (423)
Q Consensus 373 ~~g~~~~~~~~~~~~~~~r~~~~lv~in~~~~~~~~~~--~~~~~~~~g~~~~ 423 (423)
...+.+.+..+.++|+...+++++|-|++. .+.| ++|+...+|++||
T Consensus 7 ~~S~v~I~~Ae~d~YaA~Id~kv~~KiGp~----~~~P~~~~w~~a~~G~dya 55 (59)
T PF07821_consen 7 CRSKVKILAAEADLYAAIIDDKVIMKIGPR----DWSPSGSGWKLAASGDDYA 55 (59)
T ss_dssp TT--EEEEEEETTEEEEEETTTEEEEESS-----GGS---TTEEEEEEETTEE
T ss_pred CCCceEEEEecCCcEEEEECCeEEEEECCC----ccccCCCCcEEEeECCcEE
Confidence 345678889999999999999999999996 4677 5999999999997
No 72
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=96.22 E-value=0.041 Score=58.92 Aligned_cols=43 Identities=21% Similarity=0.147 Sum_probs=38.1
Q ss_pred ceeeeeeecccCC-CCCCcHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 24 TILFQGFNWESCN-KKGGWYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 24 ~v~~~~F~~d~~~-~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
++++|.|+-.|.. -+.|||..+.+-++.+++.|.+.++|+|+.
T Consensus 145 Gv~~qlySLrs~~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlh 188 (695)
T PRK11052 145 GACVQLYTLRSEHNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIH 188 (695)
T ss_pred EEEeccccCCCCCCCCeecHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 7899999977644 358999999999999999999999999998
No 73
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.11 E-value=0.027 Score=49.38 Aligned_cols=87 Identities=14% Similarity=0.233 Sum_probs=57.9
Q ss_pred ceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCC
Q 045962 24 TILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHAS 103 (423)
Q Consensus 24 ~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~ 103 (423)
++++|.+.||... .=+-+...+.+.++|++||++|.|. . .+ ....-+.|..+..-. -
T Consensus 3 GtF~q~~~~d~~~--~~~~~~W~~~~~~m~~~GidtlIlq--~----------~~--------~~~~~~yps~~~~~~-~ 59 (166)
T PF14488_consen 3 GTFLQPWSWDIHQ--NWTPAQWREEFRAMKAIGIDTLILQ--W----------TG--------YGGFAFYPSKLSPGG-F 59 (166)
T ss_pred eEEEccccchhhc--CCCHHHHHHHHHHHHHcCCcEEEEE--E----------ee--------cCCcccCCccccCcc-c
Confidence 4667777775411 1235789999999999999999865 2 22 112223333331111 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEeccc
Q 045962 104 SYGSQNELKSLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh 133 (423)
..+..+-+..+.++|.+.||+|++-+-++.
T Consensus 60 ~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 60 YMPPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred cCCcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 224578899999999999999999887763
No 74
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=96.09 E-value=0.026 Score=65.38 Aligned_cols=74 Identities=19% Similarity=0.117 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC--HHHHHHHHH------h-----cCC
Q 045962 173 DGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA--PSITRLYMK------N-----TMP 239 (423)
Q Consensus 173 ~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~--~~~~~~~~~------~-----~~p 239 (423)
+...||..+.+.+++.-++-++|+|.+.....+..|+++--|||+|||.+.++. ..+++.+-+ . ..|
T Consensus 1027 ~~eiNYRRFFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~dP~~Yl~rLr~~~~~~~~~~~~~~~~ 1106 (1693)
T PRK14507 1027 ADDINYRRFFDINSLAALRMERPDVFEATHALLFRLIAEGRIDGLRIDHPDGLADPAGYFRRLQAAVGAGPGPAGRPPPG 1106 (1693)
T ss_pred ccccCcceeecchhheeeeccCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHHHhhhhhcccccCCCC
Confidence 456788888889999999999999999999999999999999999999999994 466666522 1 245
Q ss_pred CeEEEee
Q 045962 240 HFTVAEK 246 (423)
Q Consensus 240 ~~~~gE~ 246 (423)
.+++.|-
T Consensus 1107 ~yivvEK 1113 (1693)
T PRK14507 1107 LYIVVEK 1113 (1693)
T ss_pred ceEEEEe
Confidence 7787774
No 75
>PRK10658 putative alpha-glucosidase; Provisional
Probab=96.05 E-value=0.018 Score=61.57 Aligned_cols=91 Identities=18% Similarity=0.209 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCEEEEEEecccCCCCCCC----CcccceeccC-CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 045962 110 ELKSLIQAFNKKGIKCLADIVINHRTAEKKD----RRGIWCIFEG-GTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPF 184 (423)
Q Consensus 110 ~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~----~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (423)
+.++|++++|++|++|++-+.+. ++.+++. ....++.-.. +.+..-..| .
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P~-i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W------------~------------ 380 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINPY-IAQKSPLFKEGKEKGYLLKRPDGSVWQWDKW------------Q------------ 380 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccCC-cCCCchHHHHHHHCCeEEECCCCCEeeeeec------------C------------
Confidence 35789999999999999987763 4433320 0111111000 100000001 1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 045962 185 GPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 226 (423)
Q Consensus 185 ~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~ 226 (423)
....-+|+.||++++...+.++.+++ .|||||-.|....+|
T Consensus 381 g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gvdgfw~D~gE~~p 421 (665)
T PRK10658 381 PGMAIVDFTNPDACKWYADKLKGLLD-MGVDCFKTDFGERIP 421 (665)
T ss_pred CCceeecCCCHHHHHHHHHHHHHHHh-cCCcEEEecCCceee
Confidence 11123889999999999999999987 999999999765544
No 76
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.01 E-value=0.024 Score=55.19 Aligned_cols=137 Identities=18% Similarity=0.250 Sum_probs=78.4
Q ss_pred cHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
+-+.+.+.++.+++.|| +.|||-.=+ . .+|. .+..|+.+|- +.++||+++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~----------~------------~~~~---~f~~d~~~FP---dp~~~i~~l 73 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHY----------M------------DSYR---LFTWDPYRFP---EPKKLIDEL 73 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhh----------h------------CCCC---ceeechhcCC---CHHHHHHHH
Confidence 56788888999988876 445443211 1 1222 2344524553 467999999
Q ss_pred HHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHH
Q 045962 119 NKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGP-APDIDHLNPRV 197 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~p~v 197 (423)
|++|++|++-+.+. ++.++. +..|..... .++ + +.. .++ ....+..+++ -.-+|+.||++
T Consensus 74 ~~~g~k~~~~~~P~-i~~~~~-----~~~~~~~~~---~~~---~-v~~----~~g--~~~~~~~w~G~~~~~Dftnp~a 134 (317)
T cd06600 74 HKRNVKLVTIVDPG-IRVDQN-----YSPFLSGMD---KGK---F-CEI----ESG--ELFVGKMWPGTTVYPDFTNPDT 134 (317)
T ss_pred HHCCCEEEEEeecc-ccCCCC-----ChHHHHHHH---CCE---E-EEC----CCC--CeEEEeecCCCccccCCCChHH
Confidence 99999999977664 332211 101110000 000 0 000 000 0000000111 11279999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecccCC
Q 045962 198 QKELSDWMNWLKTEIGFDGWRFDFVKG 224 (423)
Q Consensus 198 ~~~~~~~l~~w~~~~gvDGfR~D~a~~ 224 (423)
++...+.++..+.+.|||||=+|....
T Consensus 135 ~~ww~~~~~~~~~~~gvdg~w~D~~Ep 161 (317)
T cd06600 135 REWWAGLFSEWLNSQGVDGIWLDMNEP 161 (317)
T ss_pred HHHHHHHHHHHhhcCCCceEEeeCCCC
Confidence 999999999988669999999998764
No 77
>PRK10426 alpha-glucosidase; Provisional
Probab=95.73 E-value=0.12 Score=55.14 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=77.7
Q ss_pred HHHHHhhhhHHHHcC--CcEEEcCCccccCCCCccccccccccccCCCCCCCCccc-ccCCCCCCCCCCHHHHHHHHHHH
Q 045962 42 YNFLKKRIPDIASAG--ITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPG-RLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 42 ~~~~~~~L~ylk~lG--i~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~-d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
-+.+.+.++.+++.| +++|||- -+ .. ....++|.... | +..|+.+|- +.++||+++
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ld-dw----------~~------~~~~~~g~~~~~~-~~~d~~~FP---dp~~mi~~L 278 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQ-DW----------SG------IRMTSFGKRLMWN-WKWDSERYP---QLDSRIKQL 278 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEe-cc----------cc------ccccccccccccc-ceEChhhCC---CHHHHHHHH
Confidence 456778888888887 4677764 22 11 00112222111 2 234434553 478899999
Q ss_pred HHcCCEEEEEEecccCCCCCCC----Ccccceecc-CCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045962 119 NKKGIKCLADIVINHRTAEKKD----RRGIWCIFE-GGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHL 193 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~~----~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 193 (423)
|++|++|++-+-+.-. .+++. ....++.-+ .+.++.-..| .+... -+|+.
T Consensus 279 ~~~G~k~v~~i~P~v~-~~~~~y~e~~~~gy~vk~~~g~~~~~~~~----------------------~~~~~--~~Dft 333 (635)
T PRK10426 279 NEEGIQFLGYINPYLA-SDGDLCEEAAEKGYLAKDADGGDYLVEFG----------------------EFYAG--VVDLT 333 (635)
T ss_pred HHCCCEEEEEEcCccC-CCCHHHHHHHHCCcEEECCCCCEEEeEec----------------------CCCce--eecCC
Confidence 9999999999776432 22210 001111100 0000000000 01111 28899
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 045962 194 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 226 (423)
Q Consensus 194 ~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~ 226 (423)
||++++...+.++..+.+.|||||-.|....+|
T Consensus 334 np~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p 366 (635)
T PRK10426 334 NPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLP 366 (635)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCC
Confidence 999999999998755445999999999866554
No 78
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.48 E-value=0.046 Score=53.26 Aligned_cols=135 Identities=17% Similarity=0.176 Sum_probs=77.9
Q ss_pred cHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
+-+.+.+.++.+++.|| +.|+|-.=+- .. ......|. + +..|+.+|-. .++||+++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~---------~~-------~~~~~~~~--~-f~wd~~~FPd---p~~mi~~L 79 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWF---------GK-------DIDKGHMG--N-LDWDRKAFPD---PAGMIADL 79 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhh---------cC-------cccCCcee--e-eEeccccCCC---HHHHHHHH
Confidence 45678888888888876 5565543220 10 00000111 1 4445467754 57899999
Q ss_pred HHcCCEEEEEEecccCCCCCCC----CcccceeccC--CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045962 119 NKKGIKCLADIVINHRTAEKKD----RRGIWCIFEG--GTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDH 192 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~~----~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 192 (423)
|++|++|++-+.+- +..+++. ....+...+. +.+.....| .+ ...-+|+
T Consensus 80 ~~~G~k~~~~v~P~-v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w-------------~g-----------~~~~~Df 134 (317)
T cd06598 80 AKKGVKTIVITEPF-VLKNSKNWGEAVKAGALLKKDQGGVPTLFDFW-------------FG-----------NTGLIDW 134 (317)
T ss_pred HHcCCcEEEEEcCc-ccCCchhHHHHHhCCCEEEECCCCCEeeeecc-------------CC-----------CccccCC
Confidence 99999999988654 3333220 0011100000 000000001 01 1112788
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 045962 193 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 223 (423)
Q Consensus 193 ~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~ 223 (423)
.||++++...+.++.+.+ .|||||=+|...
T Consensus 135 tnp~a~~w~~~~~~~~~~-~Gvdg~w~D~~E 164 (317)
T cd06598 135 FDPAAQAWFHDNYKKLID-QGVTGWWGDLGE 164 (317)
T ss_pred CCHHHHHHHHHHHHHhhh-CCccEEEecCCC
Confidence 999999999999998865 999999999875
No 79
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=95.33 E-value=0.073 Score=51.87 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=37.6
Q ss_pred HhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 045962 46 KKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKC 125 (423)
Q Consensus 46 ~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~V 125 (423)
.+.++.||+.|+|+|-|=-.. .. .. .-+-+.+...++.++|++.||+|
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv----------~P---------~~-------------~g~~~~~~~~~~akrak~~Gm~v 74 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWV----------NP---------YD-------------GGYNDLEDVIALAKRAKAAGMKV 74 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-S----------S----------TT-------------TTTTSHHHHHHHHHHHHHTT-EE
T ss_pred CCHHHHHHhcCCCeEEEEecc----------CC---------cc-------------cccCCHHHHHHHHHHHHHCCCeE
Confidence 567899999999999765433 11 11 12335788999999999999999
Q ss_pred EEEEecccC
Q 045962 126 LADIVINHR 134 (423)
Q Consensus 126 ilD~V~nh~ 134 (423)
+||+=+..+
T Consensus 75 lldfHYSD~ 83 (332)
T PF07745_consen 75 LLDFHYSDF 83 (332)
T ss_dssp EEEE-SSSS
T ss_pred EEeecccCC
Confidence 999976554
No 80
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=95.18 E-value=0.097 Score=49.19 Aligned_cols=79 Identities=22% Similarity=0.235 Sum_probs=54.7
Q ss_pred CcccccCCCCCCCCC-------CHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCcc
Q 045962 92 YMPGRLYDLHASSYG-------SQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFI 164 (423)
Q Consensus 92 Y~~~d~~~id~~~~G-------t~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 164 (423)
++++..+..+ +.+. +.+..++.+..+|++|+||++=+--+|.+.. +
T Consensus 28 ~D~v~lf~~~-~~~~~~~~~~~~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~---------------------~----- 80 (255)
T cd06542 28 VDMVSLFAAN-INLDAATAVQFLLTNKETYIRPLQAKGTKVLLSILGNHLGAG---------------------F----- 80 (255)
T ss_pred ceEEEEcccc-cCcccccchhhhhHHHHHHHHHHhhCCCEEEEEECCCCCCCC---------------------c-----
Confidence 4555444444 4433 3588999999999999999998765544311 0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 045962 165 CRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 222 (423)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a 222 (423)
....+++-++.+.+.+..+++++|.||+=+|-=
T Consensus 81 -------------------------~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E 113 (255)
T cd06542 81 -------------------------ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDE 113 (255)
T ss_pred -------------------------cccCCHHHHHHHHHHHHHHHHHhCCCceEEeee
Confidence 012345667777888888888899999999853
No 81
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.14 E-value=0.029 Score=57.28 Aligned_cols=139 Identities=19% Similarity=0.381 Sum_probs=75.3
Q ss_pred cHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
+-+.+.+.++.+++.|| ++|+|-.-+ .. +|. + +..|+.+|- +.++|++.+
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~----------~~------------~~~--~-f~~d~~~FP---d~~~~~~~l 92 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDY----------QD------------GYG--D-FTWDPERFP---DPKQMIDEL 92 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGG----------SB------------TTB--T-T-B-TTTTT---THHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccc----------cc------------ccc--c-ccccccccc---chHHHHHhH
Confidence 46788888999988776 344433222 11 122 2 345533553 689999999
Q ss_pred HHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHH
Q 045962 119 NKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPF-GPAPDIDHLNPRV 197 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~p~v 197 (423)
|++|++|++-+.+. +..+++ .+..|..... .++. . .+..+....+..+ ....-+|+.||++
T Consensus 93 ~~~G~~~~~~~~P~-v~~~~~----~~~~~~~~~~---~~~~---v-------~~~~g~~~~~~~w~g~~~~~Dftnp~a 154 (441)
T PF01055_consen 93 HDQGIKVVLWVHPF-VSNDSP----DYENYDEAKE---KGYL---V-------KNPDGSPYIGRVWPGKGGFIDFTNPEA 154 (441)
T ss_dssp HHTT-EEEEEEESE-EETTTT----B-HHHHHHHH---TT-B---E-------BCTTSSB-EEEETTEEEEEB-TTSHHH
T ss_pred hhCCcEEEEEeecc-cCCCCC----cchhhhhHhh---cCce---e-------ecccCCcccccccCCcccccCCCChhH
Confidence 99999999999984 333321 0111110000 0000 0 0000000000001 0122388999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecccCCC
Q 045962 198 QKELSDWMNWLKTEIGFDGWRFDFVKGY 225 (423)
Q Consensus 198 ~~~~~~~l~~w~~~~gvDGfR~D~a~~~ 225 (423)
++.+.+.++.+++.+|||||-+|.....
T Consensus 155 ~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 155 RDWWKEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHHHHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHHHHHHHHhccCCceEEeecCCcc
Confidence 9999999999998779999999995544
No 82
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=95.10 E-value=0.18 Score=49.76 Aligned_cols=130 Identities=12% Similarity=0.164 Sum_probs=75.1
Q ss_pred HHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccC--------CCCCCCCCCHHHHHH
Q 045962 42 YNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLY--------DLHASSYGSQNELKS 113 (423)
Q Consensus 42 ~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~--------~id~~~~Gt~~~l~~ 113 (423)
.+.|.+.++.++..++|.+++-=.= ...|.+.+..|= ..+ ..| |.+|+++
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~HltD--------------------d~~~rle~~~~P~Lt~~ga~~~~-~~Y-T~~di~e 74 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWHITD--------------------SQSFPLESPSYPELSKKGAYSPS-EVY-TPEDVKE 74 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeEEc--------------------CCCceEeeCCCchhhhccCcCCC-ceE-CHHHHHH
Confidence 6778888899999999999863100 111112211111 112 222 7899999
Q ss_pred HHHHHHHcCCEEEEEE-ecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045962 114 LIQAFNKKGIKCLADI-VINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDH 192 (423)
Q Consensus 114 lv~~aH~~Gi~VilD~-V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 192 (423)
||+-|.++||.||..+ +|.|+..-... . | ...+.....|...+.. ...-.||.
T Consensus 75 iv~yA~~rgI~vIPEID~PGH~~a~~~~-------~----p--------~l~~~~~~~~~~~~~~-------~~~~~L~~ 128 (348)
T cd06562 75 IVEYARLRGIRVIPEIDTPGHTGSWGQG-------Y----P--------ELLTGCYAVWRKYCPE-------PPCGQLNP 128 (348)
T ss_pred HHHHHHHcCCEEEEeccCchhhHHHHHh-------C----h--------hhhCCCCccccccccC-------CCCccccC
Confidence 9999999999999998 56777532100 0 0 0000000000000000 01112899
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 045962 193 LNPRVQKELSDWMNWLKTEIGFDGWRF 219 (423)
Q Consensus 193 ~~p~v~~~~~~~l~~w~~~~gvDGfR~ 219 (423)
.+|++.+++.+++..+++-+...=|.+
T Consensus 129 ~~~~t~~fl~~vl~E~~~lF~~~~iHi 155 (348)
T cd06562 129 TNPKTYDFLKTLFKEVSELFPDKYFHL 155 (348)
T ss_pred CChhHHHHHHHHHHHHHHhcCCcceEe
Confidence 999999999999999988555433443
No 83
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=95.06 E-value=0.047 Score=53.80 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=42.4
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
.+++...+.|...++.||+.|+.+=-. +. + ..=...+.|++|++.||
T Consensus 11 ~~~~~~~~yi~~a~~~Gf~~iFTSL~i----------pe----------------------~-~~~~~~~~~~~l~~~a~ 57 (357)
T PF05913_consen 11 SSFEENKAYIEKAAKYGFKRIFTSLHI----------PE----------------------D-DPEDYLERLKELLKLAK 57 (357)
T ss_dssp S-HHHHHHHHHHHHCTTEEEEEEEE------------------------------------------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCc----------CC----------------------C-CHHHHHHHHHHHHHHHH
Confidence 367888888999999999999854211 00 0 11122588999999999
Q ss_pred HcCCEEEEEEecccC
Q 045962 120 KKGIKCLADIVINHR 134 (423)
Q Consensus 120 ~~Gi~VilD~V~nh~ 134 (423)
+.||+||+|+-+.-.
T Consensus 58 ~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 58 ELGMEVIADISPKVL 72 (357)
T ss_dssp HCT-EEEEEE-CCHH
T ss_pred HCCCEEEEECCHHHH
Confidence 999999999987633
No 84
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=94.86 E-value=0.042 Score=51.99 Aligned_cols=80 Identities=15% Similarity=0.249 Sum_probs=51.0
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
.+|-.+.|... .. .+. ...+.++.+|++|+|+|-|.-.. .... ....++ .++
T Consensus 6 ~~v~~~G~n~~-w~---~~~-~~~~~~~~~~~~G~n~VRi~v~~----------~~~~------~~~~~~------~~~- 57 (281)
T PF00150_consen 6 KPVNWRGFNTH-WY---NPS-ITEADFDQLKALGFNTVRIPVGW----------EAYQ------EPNPGY------NYD- 57 (281)
T ss_dssp EBEEEEEEEET-TS---GGG-SHHHHHHHHHHTTESEEEEEEES----------TSTS------TTSTTT------SBT-
T ss_pred CeEEeeeeecc-cC---CCC-CHHHHHHHHHHCCCCEEEeCCCH----------HHhc------CCCCCc------ccc-
Confidence 35667777742 11 122 66777999999999999986544 2200 001111 222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
+ ...+.|+++|++|+++||+||+|+--.
T Consensus 58 ~--~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 58 E--TYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp H--HHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred H--HHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 2 236889999999999999999988664
No 85
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=94.67 E-value=0.51 Score=46.16 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=79.3
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccC---------CCC--CCCCCCHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLY---------DLH--ASSYGSQN 109 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~---------~id--~~~~Gt~~ 109 (423)
+.+.|.+.+|.++..++|.+++.-.=. ..|...+..|= ... +..+=|.+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~--------------------~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~ 75 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDD--------------------QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQE 75 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecC--------------------CcceeeecCcccccccccccccCCCCCCcCCHH
Confidence 467788888999999999999754210 11111111110 111 01122799
Q ss_pred HHHHHHHHHHHcCCEEEEEE-ecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCC-CCCCCCCCCCCCCCCCCCC
Q 045962 110 ELKSLIQAFNKKGIKCLADI-VINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDD-TTYSDGRGHPDSGEPFGPA 187 (423)
Q Consensus 110 ~l~~lv~~aH~~Gi~VilD~-V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 187 (423)
|+++||+-|.++||.||-.+ +|.|+..--. . + +...|... .... .......
T Consensus 76 di~elv~yA~~rgI~vIPEiD~PGH~~a~~~----~---~------------p~l~~~~~~~~~~--------~~~~~~~ 128 (329)
T cd06568 76 DYKDIVAYAAERHITVVPEIDMPGHTNAALA----A---Y------------PELNCDGKAKPLY--------TGIEVGF 128 (329)
T ss_pred HHHHHHHHHHHcCCEEEEecCCcHHHHHHHH----h---C------------hhhccCCCCCccc--------cccCCCC
Confidence 99999999999999999988 4566642110 0 0 00000000 0000 0000011
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe--cccCCCCHH
Q 045962 188 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF--DFVKGYAPS 228 (423)
Q Consensus 188 ~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~--D~a~~~~~~ 228 (423)
..||..+|++.+++.+.+..+++-+...=|.+ |-+.....+
T Consensus 129 ~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHiGgDE~~~~~~~ 171 (329)
T cd06568 129 SSLDVDKPTTYEFVDDVFRELAALTPGPYIHIGGDEAHSTPHD 171 (329)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHhCCCCeEEEecccCCCCchH
Confidence 23899999999999999999987554444444 444444443
No 86
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=94.61 E-value=0.38 Score=49.45 Aligned_cols=45 Identities=11% Similarity=-0.089 Sum_probs=30.8
Q ss_pred ceeeeeeecccCCC-CCCcHHHHHhhhhHHH-HcCCcEEEcCCcccc
Q 045962 24 TILFQGFNWESCNK-KGGWYNFLKKRIPDIA-SAGITHVWLSSTFSL 68 (423)
Q Consensus 24 ~v~~~~F~~d~~~~-~~G~~~~~~~~L~ylk-~lGi~~I~l~Pi~~~ 68 (423)
++.++.+.-.+.+. +.|||-.+.-.+.-.. +-|.+.++|.|+...
T Consensus 15 g~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~ 61 (520)
T COG1640 15 GSGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHAT 61 (520)
T ss_pred cceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCcc
Confidence 44455554222222 4799999998875554 999999999998843
No 87
>smart00632 Aamy_C Aamy_C domain.
Probab=94.41 E-value=0.072 Score=40.63 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=27.4
Q ss_pred cCCEEEEEECCEEEEEECCCCCcCc-----cCC-cCeEEeecc
Q 045962 383 QSDLYVAAIDDKIITKIGPKMDLRN-----LIP-RNFKVATSG 419 (423)
Q Consensus 383 ~~~~~~~~r~~~~lv~in~~~~~~~-----~~~-~~~~~~~~g 419 (423)
++++++|.|+++.+|+||++..... .+| +.|+++++|
T Consensus 7 ~~~~laF~Rg~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~g 49 (81)
T smart00632 7 GDNQIAFERGSKGFVAINRSDSDLTITLQTSLPAGTYCDVISG 49 (81)
T ss_pred CCeEEEEECCCeEEEEEECCCCceEEEEeecCCCcceEEEecC
Confidence 3459999999999999997643111 355 489999884
No 88
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.07 E-value=0.12 Score=49.71 Aligned_cols=135 Identities=11% Similarity=0.132 Sum_probs=73.5
Q ss_pred cHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
+-+.+.+-++.+++.|| ++|||=.=+. .. ........+|. -++.|+.+|- +.++||+++
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~---------~~----~~~~~~~~~~~---~ft~d~~~FP---dp~~mi~~L 83 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWH---------VT----DIPSKYGSGWT---GYSWNRKLFP---DPEKLLQDL 83 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccc---------cc----cccccccCCcc---eeEEChhcCC---CHHHHHHHH
Confidence 56788888898988776 4454421110 00 00000001222 2455534664 468999999
Q ss_pred HHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 045962 119 NKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQ 198 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~ 198 (423)
|++|+|||+-+.+.. +.+.. ...|..+.... .. ....+ ...-+|+.||+.+
T Consensus 84 h~~G~k~v~~v~P~~-~~~~~--~~~y~~~~~~~-----~~----------~~~~~-----------~~~~~D~tnp~a~ 134 (292)
T cd06595 84 HDRGLKVTLNLHPAD-GIRAH--EDQYPEMAKAL-----GV----------DPATE-----------GPILFDLTNPKFM 134 (292)
T ss_pred HHCCCEEEEEeCCCc-ccCCC--cHHHHHHHHhc-----CC----------CcccC-----------CeEEecCCCHHHH
Confidence 999999999887753 21110 00011011000 00 00000 0013789999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEecccC
Q 045962 199 KELSDWMNWLKTEIGFDGWRFDFVK 223 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~D~a~ 223 (423)
+...+.+...+.+.|||||=.|+..
T Consensus 135 ~~w~~~~~~~~~~~Gidg~W~D~~E 159 (292)
T cd06595 135 DAYFDNVHRPLEKQGVDFWWLDWQQ 159 (292)
T ss_pred HHHHHHHHHHHHhcCCcEEEecCCC
Confidence 8776666554445999999999643
No 89
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=93.93 E-value=0.096 Score=55.11 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCCceEEecCCCC-----------------------------Cch--------h-HHHHHHHHHHHHhcCc
Q 045962 330 MLGYAYILTHPGTPSIFYDHLF-----------------------------DWD--------L-KKEIGKLAAIRTKNGI 371 (423)
Q Consensus 330 ~~a~a~~~~~pG~P~iy~G~~~-----------------------------~w~--------~-~~~~~~L~~lR~~~~~ 371 (423)
..+..+-+|.||||=||+|.|. +|+ + ...+.+++++|+++|.
T Consensus 709 L~q~LlkltaPGVPD~YQGtE~wd~SLVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~~~e 788 (889)
T COG3280 709 LAQTLLKLTAPGVPDIYQGTELWDFSLVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRREHPE 788 (889)
T ss_pred HHHHHHHHcCCCCCccccchhhhhccccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHhchH
Confidence 4456677889999999999752 111 1 2255789999999996
Q ss_pred -ccccceEEEeec----CCEEEEEE---CCEEEEEEC
Q 045962 372 -NTTSRVNILASQ----SDLYVAAI---DDKIITKIG 400 (423)
Q Consensus 372 -l~~g~~~~~~~~----~~~~~~~r---~~~~lv~in 400 (423)
+..|++..+... +.+++|.| ++.+|++++
T Consensus 789 lF~~GdY~Pl~~~G~~a~hviAFaR~~~~~~~i~v~P 825 (889)
T COG3280 789 LFAGGDYLPLFAAGPAADHVIAFARGKDDQFAITVAP 825 (889)
T ss_pred hhcCCCeeeecccCchhHHHHHHhhccCCceeEEeeh
Confidence 588999988743 47999998 455666666
No 90
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=0.1 Score=49.97 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=42.0
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
+....-++-|+...+.||+-|..+=.. .. ...+ +-..-|++|++.||
T Consensus 13 ~~~~~~~~Yi~~~~~~Gf~~IFtsl~~----------~~--------~~~~---------------~~~~~~~ell~~An 59 (360)
T COG3589 13 SPKEKDIAYIDRMHKYGFKRIFTSLLI----------PE--------EDAE---------------LYFHRFKELLKEAN 59 (360)
T ss_pred CcchhHHHHHHHHHHcCccceeeeccc----------CC--------chHH---------------HHHHHHHHHHHHHH
Confidence 445666777788888999988754333 11 0000 12356999999999
Q ss_pred HcCCEEEEEEecc
Q 045962 120 KKGIKCLADIVIN 132 (423)
Q Consensus 120 ~~Gi~VilD~V~n 132 (423)
+.||+||+|+-+.
T Consensus 60 klg~~vivDvnPs 72 (360)
T COG3589 60 KLGLRVIVDVNPS 72 (360)
T ss_pred hcCcEEEEEcCHH
Confidence 9999999999775
No 91
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=93.85 E-value=0.54 Score=50.42 Aligned_cols=136 Identities=18% Similarity=0.241 Sum_probs=79.0
Q ss_pred CcHHHHHhhhhHHHHcCCc--EEEcCCccccCCCCccccccccccccCCCCCCCCc--ccccCCCCCCCCCCHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGIT--HVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYM--PGRLYDLHASSYGSQNELKSLI 115 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~--~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~--~~d~~~id~~~~Gt~~~l~~lv 115 (423)
+++..+.+..++.+++||. .+|.-= -|. -.| |.+|+..|++ +++++
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~~Di--------------------------DyMd~ykD-FTvd~~~fp~---~~~fv 357 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIVIDI--------------------------DYMDGYKD-FTVDKVWFPD---LKDFV 357 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceeeeeh--------------------------hhhhcccc-eeeccccCcc---hHHHH
Confidence 5678888888888888884 333111 111 233 4455467776 99999
Q ss_pred HHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 045962 116 QAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNP 195 (423)
Q Consensus 116 ~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p 195 (423)
+.+|++|+|+|+=+-++-..... |..|+.+..... |....+... +.+ ++.+.+ ...=+|+.||
T Consensus 358 ~~Lh~~G~kyvliidP~is~~~~------y~~y~~g~~~~v--~I~~~~g~~-~~l----g~vwP~----~~~fpDftnp 420 (805)
T KOG1065|consen 358 DDLHARGFKYVLIIDPFISTNSS------YGPYDRGVAKDV--LIKNREGSP-KML----GEVWPG----STAFPDFTNP 420 (805)
T ss_pred HHHHhCCCeEEEEeCCccccCcc------chhhhhhhhhce--eeecccCch-hhh----cccCCC----cccccccCCc
Confidence 99999999998876654221111 221221111100 000000000 000 011111 1122778999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEeccc
Q 045962 196 RVQKELSDWMNWLKTEIGFDGWRFDFV 222 (423)
Q Consensus 196 ~v~~~~~~~l~~w~~~~gvDGfR~D~a 222 (423)
.+.....+.++.+-++.++|||=+|+-
T Consensus 421 ~~~~Ww~~~~~~fh~~vp~dg~wiDmn 447 (805)
T KOG1065|consen 421 AVVEWWLDELKRFHDEVPFDGFWIDMN 447 (805)
T ss_pred hHHHHHHHHHHhhcccCCccceEEECC
Confidence 999999999999989999999999983
No 92
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=93.20 E-value=0.31 Score=52.99 Aligned_cols=90 Identities=19% Similarity=0.199 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCEEEEEEecccCCCCCCC----CcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC-C
Q 045962 111 LKSLIQAFNKKGIKCLADIVINHRTAEKKD----RRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPF-G 185 (423)
Q Consensus 111 l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 185 (423)
.++|++..|++|||+|+=+.|.-.. +++. ....|+.-.. .+.......+ .
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~i~~-d~~~~~e~~~~Gy~~k~~------------------------~g~~~~~~~w~~ 377 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPYIKQ-DSPLFKEAIEKGYFVKDP------------------------DGEIYQADFWPG 377 (772)
T ss_pred HHHHHHHHHhcCceEEEEecccccc-CCchHHHHHHCCeEEECC------------------------CCCEeeecccCC
Confidence 4599999999999999998886433 2210 0011111000 0011111111 1
Q ss_pred CCCCCCCCCHHHHHHHHH-HHHHHHHhcCCCeEEecccCCCC
Q 045962 186 PAPDIDHLNPRVQKELSD-WMNWLKTEIGFDGWRFDFVKGYA 226 (423)
Q Consensus 186 ~~~dln~~~p~v~~~~~~-~l~~w~~~~gvDGfR~D~a~~~~ 226 (423)
...-+|+.||++|+...+ ..+.+++ .|||||=.|+....+
T Consensus 378 ~~a~~DFtnp~~r~Ww~~~~~~~l~d-~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 378 NSAFPDFTNPDAREWWASDKKKNLLD-LGVDGFWNDMNEPEP 418 (772)
T ss_pred cccccCCCCHHHHHHHHHHHHhHHHh-cCccEEEccCCCCcc
Confidence 222388999999999995 5566876 999999999876654
No 93
>PLN03059 beta-galactosidase; Provisional
Probab=93.09 E-value=0.22 Score=53.96 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=43.5
Q ss_pred HHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 045962 42 YNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKK 121 (423)
Q Consensus 42 ~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~ 121 (423)
-+-..++|..+|++|+|+|..==++.+. +. .+- . -.|.+..||.++++.|++.
T Consensus 58 p~~W~d~L~k~Ka~GlNtV~tYV~Wn~H-------Ep--------------~~G-----~-~dF~G~~DL~~Fl~la~e~ 110 (840)
T PLN03059 58 PEMWPDLIQKAKDGGLDVIQTYVFWNGH-------EP--------------SPG-----N-YYFEDRYDLVKFIKVVQAA 110 (840)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeccccc-------CC--------------CCC-----e-eeccchHHHHHHHHHHHHc
Confidence 4578889999999999999853222111 01 010 0 1233468899999999999
Q ss_pred CCEEEEEEecc
Q 045962 122 GIKCLADIVIN 132 (423)
Q Consensus 122 Gi~VilD~V~n 132 (423)
||.||+=.=+-
T Consensus 111 GLyvilRpGPY 121 (840)
T PLN03059 111 GLYVHLRIGPY 121 (840)
T ss_pred CCEEEecCCcc
Confidence 99999864443
No 94
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=93.05 E-value=1.2 Score=42.08 Aligned_cols=67 Identities=16% Similarity=-0.045 Sum_probs=43.0
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCC-cccccCCCCCCCCCCHHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGY-MPGRLYDLHASSYGSQNELKSLIQA 117 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY-~~~d~~~id~~~~Gt~~~l~~lv~~ 117 (423)
+-+.+....-+|+.+++|+..|.+ - .. ...++. ...|+.... + ..++++||+-
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv---D----------~G--------W~~~~~~~~~d~~~~~-~----~~dl~elv~Y 81 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV---D----------AG--------WYGWEKDDDFDFTKPI-P----DFDLPELVDY 81 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE---B----------TT--------CCGS--TTT--TT-B--T----T--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe---c----------cc--------cccccccccccccccC-C----ccCHHHHHHH
Confidence 458999999999999999999986 2 22 111222 234444454 3 3679999999
Q ss_pred HHHcCCEEEEEEec
Q 045962 118 FNKKGIKCLADIVI 131 (423)
Q Consensus 118 aH~~Gi~VilD~V~ 131 (423)
|+++|++|+|-..-
T Consensus 82 a~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 82 AKEKGVGIWLWYHS 95 (273)
T ss_dssp HHHTT-EEEEEEEC
T ss_pred HHHcCCCEEEEEeC
Confidence 99999999987643
No 95
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=92.76 E-value=0.16 Score=50.63 Aligned_cols=125 Identities=21% Similarity=0.312 Sum_probs=69.3
Q ss_pred HHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCC--CHHHHHHHHHHHHH
Q 045962 43 NFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYG--SQNELKSLIQAFNK 120 (423)
Q Consensus 43 ~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~G--t~~~l~~lv~~aH~ 120 (423)
+.+.+.+.-+|++|||.|-|..+. -+ .++ |.=| +-+.|.++++.|++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~----------W~--------------------~lE-P~eG~ydF~~lD~~l~~a~~ 58 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFS----------WS--------------------WLE-PEEGQYDFSWLDRVLDLAAK 58 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCE----------HH--------------------HH--SBTTB---HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEec----------hh--------------------hcc-CCCCeeecHHHHHHHHHHHh
Confidence 578888999999999999987765 22 111 1111 24568899999999
Q ss_pred cCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 045962 121 KGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKE 200 (423)
Q Consensus 121 ~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~ 200 (423)
+||+|||-+... .. +.|.. .. .| +... .+..+.. .....-...+..+|.++++
T Consensus 59 ~Gi~viL~~~~~-~~-------P~Wl~-~~-~P----e~~~----------~~~~g~~---~~~g~~~~~~~~~p~yr~~ 111 (374)
T PF02449_consen 59 HGIKVILGTPTA-AP-------PAWLY-DK-YP----EILP----------VDADGRR---RGFGSRQHYCPNSPAYREY 111 (374)
T ss_dssp TT-EEEEEECTT-TS--------HHHH-CC-SG----CCC-----------B-TTTSB---EECCCSTT-HCCHHHHHHH
T ss_pred ccCeEEEEeccc-cc-------ccchh-hh-cc----cccc----------cCCCCCc---CccCCccccchhHHHHHHH
Confidence 999999977621 11 11221 00 00 0000 0000000 0011112256789999999
Q ss_pred HHHHHHHHHHhcC----CCeEEecccCCC
Q 045962 201 LSDWMNWLKTEIG----FDGWRFDFVKGY 225 (423)
Q Consensus 201 ~~~~l~~w~~~~g----vDGfR~D~a~~~ 225 (423)
+.+.+..+.+.++ |-|+-+|.=...
T Consensus 112 ~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 112 ARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp HHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred HHHHHHHHHhhccccceEEEEEeccccCc
Confidence 8888877776554 668888865433
No 96
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=92.58 E-value=0.35 Score=37.84 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=29.8
Q ss_pred EeecCCEEEEEECC----EEEEEECCCCC-----cCccCC--cCeEEeeccCC
Q 045962 380 LASQSDLYVAAIDD----KIITKIGPKMD-----LRNLIP--RNFKVATSGKD 421 (423)
Q Consensus 380 ~~~~~~~~~~~r~~----~~lv~in~~~~-----~~~~~~--~~~~~~~~g~~ 421 (423)
-..++++++|.|.+ .+||++|.+.. ....+| +.|+++++++.
T Consensus 5 ~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~ 57 (95)
T PF02806_consen 5 DDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDD 57 (95)
T ss_dssp EEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTC
T ss_pred ccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCc
Confidence 35678999999932 69999996543 222344 38999998865
No 97
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=92.54 E-value=0.48 Score=44.68 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=37.1
Q ss_pred HHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCC---HHHHHHHHHHHHHc
Q 045962 45 LKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS---QNELKSLIQAFNKK 121 (423)
Q Consensus 45 ~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt---~~~l~~lv~~aH~~ 121 (423)
-.+.+.-||..|||.|-|==.. .. ..+.| . +-.|+ .+...++.++|++.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwn----------dP--------~dsng---------n-~yggGnnD~~k~ieiakRAk~~ 116 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWN----------DP--------YDSNG---------N-GYGGGNNDLKKAIEIAKRAKNL 116 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEec----------CC--------ccCCC---------C-ccCCCcchHHHHHHHHHHHHhc
Confidence 4456888999999998764322 11 01111 1 22223 44455677788999
Q ss_pred CCEEEEEEec
Q 045962 122 GIKCLADIVI 131 (423)
Q Consensus 122 Gi~VilD~V~ 131 (423)
||||++|+-+
T Consensus 117 GmKVl~dFHY 126 (403)
T COG3867 117 GMKVLLDFHY 126 (403)
T ss_pred CcEEEeeccc
Confidence 9999999854
No 98
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=92.53 E-value=0.27 Score=48.74 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 045962 192 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 223 (423)
Q Consensus 192 ~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~ 223 (423)
..+|..|+.+++.+..+++++|.||+-+|-=.
T Consensus 91 l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~ 122 (358)
T cd02875 91 ISNPTYRTQWIQQKVELAKSQFMDGINIDIEQ 122 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEcccC
Confidence 45788999999998888888999999999643
No 99
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=92.46 E-value=0.26 Score=54.44 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 045962 190 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 223 (423)
Q Consensus 190 ln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~ 223 (423)
.|+.||++++...+.++.+++ .|||||=+|+-.
T Consensus 304 pDFTnP~ar~WW~~~~k~l~d-~GVDG~W~DmnE 336 (978)
T PLN02763 304 PDFTNKKTRSWWANLVKDFVS-NGVDGIWNDMNE 336 (978)
T ss_pred cCCCCHHHHHHHHHHHHHHhc-CCCcEEEccCCC
Confidence 588999999999999999987 999999999843
No 100
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=92.42 E-value=0.43 Score=46.73 Aligned_cols=110 Identities=18% Similarity=0.267 Sum_probs=72.4
Q ss_pred cHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
+-+.+.+.++.+++.+| ++|||-.=+ . .+|. .|..|+.+|-+ .++|++++
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy----------~------------~~~~---~Ft~d~~~FPd---p~~mv~~L 73 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDF----------Q------------DNYR---TFTTNGGGFPN---PKEMFDNL 73 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCch----------h------------cCCC---ceeecCCCCCC---HHHHHHHH
Confidence 46778888888888776 455543322 1 1221 35555356754 47899999
Q ss_pred HHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 045962 119 NKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQ 198 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~ 198 (423)
|++|++||+-+.+-=. . + ..|. +. ... .|+.||+++
T Consensus 74 ~~~G~klv~~i~P~i~-~-------------g------~~~~-------------~~---------~~~--pDftnp~ar 109 (332)
T cd06601 74 HNKGLKCSTNITPVIS-Y-------------G------GGLG-------------SP---------GLY--PDLGRPDVR 109 (332)
T ss_pred HHCCCeEEEEecCcee-c-------------C------ccCC-------------CC---------cee--eCCCCHHHH
Confidence 9999999998765311 0 0 0010 00 011 578899999
Q ss_pred HHHHHHHHHHHHhcCCCeEEecccC
Q 045962 199 KELSDWMNWLKTEIGFDGWRFDFVK 223 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~D~a~ 223 (423)
+...+..+.+.+ .|||||=+|+..
T Consensus 110 ~wW~~~~~~l~~-~Gv~~~W~DmnE 133 (332)
T cd06601 110 EWWGNQYKYLFD-IGLEFVWQDMTT 133 (332)
T ss_pred HHHHHHHHHHHh-CCCceeecCCCC
Confidence 999888888886 899999999754
No 101
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=92.40 E-value=0.38 Score=47.34 Aligned_cols=136 Identities=13% Similarity=0.160 Sum_probs=76.5
Q ss_pred cHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
+-+.+.+.++.+++.|| +.|+|-.-+ ..+|. .|..|+.+|- +.++||+++
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~----------------------~~~~~---~f~~d~~~FP---dp~~mi~~L 73 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH----------------------TDGKR---YFTWDKKKFP---DPEKMQEKL 73 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH----------------------hCCCC---ceEeCcccCC---CHHHHHHHH
Confidence 56788888898988776 445443221 11222 2455634664 468899999
Q ss_pred HHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHH
Q 045962 119 NKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPF-GPAPDIDHLNPRV 197 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~p~v 197 (423)
|++|++|++-+.+--.. +.. +..|..... .++. .. +..+....+..+ ....-+|+.||++
T Consensus 74 ~~~G~k~~~~~~P~v~~-~~~-----~~~y~e~~~---~g~~---vk-------~~~g~~~~~~~w~g~~~~~Dftnp~a 134 (339)
T cd06603 74 ASKGRKLVTIVDPHIKR-DDG-----YYVYKEAKD---KGYL---VK-------NSDGGDFEGWCWPGSSSWPDFLNPEV 134 (339)
T ss_pred HHCCCEEEEEecCceec-CCC-----CHHHHHHHH---CCeE---EE-------CCCCCEEEEEECCCCcCCccCCChhH
Confidence 99999999998765332 110 000110000 0000 00 000000000000 0112388999999
Q ss_pred HHHHHHHHHHHHH--hcCCCeEEecccC
Q 045962 198 QKELSDWMNWLKT--EIGFDGWRFDFVK 223 (423)
Q Consensus 198 ~~~~~~~l~~w~~--~~gvDGfR~D~a~ 223 (423)
++...+.++.++. ..|+||+=+|+..
T Consensus 135 ~~ww~~~~~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 135 RDWWASLFSYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred HHHHHHHHHHHhhcccCCCceEEeccCC
Confidence 9999999998875 3689999988753
No 102
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=92.38 E-value=0.55 Score=44.08 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 045962 192 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 223 (423)
Q Consensus 192 ~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~ 223 (423)
..+|..|+.+++.+..+++++|.||+-+|-=.
T Consensus 78 ~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~ 109 (253)
T cd06545 78 LNDPAKRKALVDKIINYVVSYNLDGIDVDLEG 109 (253)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCceeEEeec
Confidence 35788999999998888888999999999643
No 103
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=92.36 E-value=1 Score=44.69 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE-ecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADI-VINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFG 185 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~-V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (423)
|.+|++++|+-|.++||.||-.+ +|.|+..--. .+ +...+..... .+.. ....
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~-------~~------------pel~~~~~~~------~~~~-~~~~ 137 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAALA-------AY------------PELGCTGGPG------SVVS-VQGV 137 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHH-------hC------------ccccCCCCCC------cccc-ccCc
Confidence 79999999999999999999987 4566642110 00 0000000000 0000 0000
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 045962 186 PAPDIDHLNPRVQKELSDWMNWLKTEIG 213 (423)
Q Consensus 186 ~~~dln~~~p~v~~~~~~~l~~w~~~~g 213 (423)
..-.||..+|++.+++.+.+..+++-+.
T Consensus 138 ~~~~L~~~~~~t~~f~~~ll~E~~~lF~ 165 (357)
T cd06563 138 VSNVLCPGKPETYTFLEDVLDEVAELFP 165 (357)
T ss_pred CCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 1112889999999999999999987444
No 104
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=92.26 E-value=1.4 Score=41.68 Aligned_cols=97 Identities=20% Similarity=0.272 Sum_probs=65.9
Q ss_pred CcHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQA 117 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~ 117 (423)
.+-+.+.+.++.+++.|| ++|+|-.-+ .. +|.... +..|+.+|-+ .++||+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~----------~~------------~~~~f~-~~~d~~~Fpd---p~~~i~~ 74 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDY----------TD------------GYGDFT-FDWDAGKFPN---PKSMIDE 74 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECccc----------cc------------CCceee-eecChhhCCC---HHHHHHH
Confidence 467788899999988665 466665544 21 111110 2455346644 6789999
Q ss_pred HHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 045962 118 FNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRV 197 (423)
Q Consensus 118 aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v 197 (423)
+|++|++|++-+.+. +
T Consensus 75 l~~~g~~~~~~~~P~----------------------------------------------------------------v 90 (265)
T cd06589 75 LHDNGVKLVLWIDPY----------------------------------------------------------------I 90 (265)
T ss_pred HHHCCCEEEEEeChh----------------------------------------------------------------H
Confidence 999999999966442 2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 045962 198 QKELSDWMNWLKTEIGFDGWRFDFVKGYA 226 (423)
Q Consensus 198 ~~~~~~~l~~w~~~~gvDGfR~D~a~~~~ 226 (423)
++...+.++..+.+.|||||-+|.....+
T Consensus 91 ~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~ 119 (265)
T cd06589 91 REWWAEVVKKLLVSLGVDGFWTDMGEPSP 119 (265)
T ss_pred HHHHHHHHHHhhccCCCCEEeccCCCCCc
Confidence 66677777766456999999999876543
No 105
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=91.78 E-value=0.76 Score=44.41 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=71.3
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCC---------C-CCCCCCHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDL---------H-ASSYGSQNE 110 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~i---------d-~~~~Gt~~~ 110 (423)
+.+.|.+.++.+...++|.+++-=-= ...|.+....|=.+ . +..+=|.+|
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D--------------------~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d 73 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTD--------------------DQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ 73 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeec--------------------CCCceEeeCccchhhhhcccccCCCCCCeECHHH
Confidence 46778888999999999999864210 01111111111000 1 011227899
Q ss_pred HHHHHHHHHHcCCEEEEEE-ecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 045962 111 LKSLIQAFNKKGIKCLADI-VINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPD 189 (423)
Q Consensus 111 l~~lv~~aH~~Gi~VilD~-V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 189 (423)
+++||+-|.++||.||-.+ +|.|+..--.. +.. .. ..|.....+. ..--.
T Consensus 74 i~elv~yA~~rgI~viPEiD~PGH~~a~~~~-------~p~--------l~--~~~~~~~~~~------------~~~~~ 124 (303)
T cd02742 74 LKDIIEYAAARGIEVIPEIDMPGHSTAFVKS-------FPK--------LL--TECYAGLKLR------------DVFDP 124 (303)
T ss_pred HHHHHHHHHHcCCEEEEeccchHHHHHHHHh-------CHH--------hc--cCccccCCCC------------CCCCc
Confidence 9999999999999999988 56777531100 000 00 0000000000 00113
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhc
Q 045962 190 IDHLNPRVQKELSDWMNWLKTEI 212 (423)
Q Consensus 190 ln~~~p~v~~~~~~~l~~w~~~~ 212 (423)
||..+|++.+++.+.+..+++-+
T Consensus 125 l~~~~~~t~~fl~~l~~e~~~lf 147 (303)
T cd02742 125 LDPTLPKGYDFLDDLFGEIAELF 147 (303)
T ss_pred cCCCCccHHHHHHHHHHHHHHhC
Confidence 88999999999999999998744
No 106
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.54 E-value=1.8 Score=42.34 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE-ecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADI-VINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFG 185 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~-V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (423)
|.+|++++|+-|.++||.||-.+ +|.|+..--. . + +...+... ....
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~-----~--~------------pel~~~~~-------------~~~~ 127 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTK-----A--M------------PELGLKNP-------------FSKY 127 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHH-----h--h------------HHhcCCCc-------------ccCC
Confidence 89999999999999999999887 4667643110 0 0 00000000 0001
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCeEEe
Q 045962 186 PAPDIDHLNPRVQKELSDWMNWLKTEIG--FDGWRF 219 (423)
Q Consensus 186 ~~~dln~~~p~v~~~~~~~l~~w~~~~g--vDGfR~ 219 (423)
..-.||..+|++.+++.+.+..+++-+. -+=|.+
T Consensus 128 ~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~~~~Hi 163 (326)
T cd06564 128 DKDTLDISNPEAVKFVKALFDEYLDGFNPKSDTVHI 163 (326)
T ss_pred CcccccCCCHHHHHHHHHHHHHHHHhcCCCCCEEEe
Confidence 1122889999999999999999998676 555555
No 107
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=91.31 E-value=12 Score=34.61 Aligned_cols=105 Identities=13% Similarity=0.052 Sum_probs=70.1
Q ss_pred hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 045962 49 IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLAD 128 (423)
Q Consensus 49 L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD 128 (423)
++++|++||++|.++-=+ ..+. .++..++|+.++++|++|+-.
T Consensus 77 l~~~k~lGf~~IEiS~G~-------------------------------~~i~------~~~~~rlI~~~~~~g~~v~~E 119 (237)
T TIGR03849 77 LNECDELGFEAVEISDGS-------------------------------MEIS------LEERCNLIERAKDNGFMVLSE 119 (237)
T ss_pred HHHHHHcCCCEEEEcCCc-------------------------------cCCC------HHHHHHHHHHHHhCCCeEecc
Confidence 559999999999976433 3344 588999999999999999865
Q ss_pred EecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 045962 129 IVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSDWMNWL 208 (423)
Q Consensus 129 ~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~l~~w 208 (423)
+=.-... .+. ......+++.++..
T Consensus 120 vG~K~~~------------------------------------------------------~~~--~~~~~~~i~~~~~~ 143 (237)
T TIGR03849 120 VGKKSPE------------------------------------------------------KDS--ELTPDDRIKLINKD 143 (237)
T ss_pred ccccCCc------------------------------------------------------ccc--cCCHHHHHHHHHHH
Confidence 4221100 000 00123456777788
Q ss_pred HHhcCCCeEEecc------------cCCCCHHHHHHHHHhcCCCeEEEeec
Q 045962 209 KTEIGFDGWRFDF------------VKGYAPSITRLYMKNTMPHFTVAEKW 247 (423)
Q Consensus 209 ~~~~gvDGfR~D~------------a~~~~~~~~~~~~~~~~p~~~~gE~~ 247 (423)
++ .|++=.-+++ ...+-.+...+++++..+.-++=|+-
T Consensus 144 Le-AGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp 193 (237)
T TIGR03849 144 LE-AGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENVDINKVIFEAP 193 (237)
T ss_pred HH-CCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhCChhcEEEECC
Confidence 86 8998888777 22334577888888776655666765
No 108
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=90.66 E-value=3.4 Score=39.16 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=73.6
Q ss_pred HHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHH-HHHHHcCC
Q 045962 45 LKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLI-QAFNKKGI 123 (423)
Q Consensus 45 ~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv-~~aH~~Gi 123 (423)
+-.-++.|+++|+|+|+|-++. .. +..|..+.-|-|..+--+- .+-|-+.+ ....+.|+
T Consensus 19 l~~l~~ri~~~~~~tV~Lqaf~----------d~----~gdg~~~~~YFpnr~lpvr------aDlf~rvawql~tr~~v 78 (294)
T PF14883_consen 19 LDKLIQRIKDMGINTVYLQAFA----------DP----DGDGNADAVYFPNRHLPVR------ADLFNRVAWQLRTRAGV 78 (294)
T ss_pred HHHHHHHHHHcCCCEEEEEeee----------CC----CCCCceeeEEcCCCCCchH------HHHHHHHHHHHhhhhCC
Confidence 4445788999999999999887 22 0111222224444433333 34466666 44459999
Q ss_pred EEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 045962 124 KCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSD 203 (423)
Q Consensus 124 ~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~ 203 (423)
+|+..+.. .+-+-+. ...+..... . ...-.....|..-+|++|+.|.+
T Consensus 79 ~VyAWMPv--laf~lp~---------------~~~~~~~~~-------~--------~~~~~~y~RLSPf~p~~r~~I~~ 126 (294)
T PF14883_consen 79 KVYAWMPV--LAFDLPK---------------VKRADEVRT-------D--------RPDPDGYRRLSPFDPEARQIIKE 126 (294)
T ss_pred EEEEeeeh--hhccCCC---------------cchhhhccc-------c--------CCCCCCceecCCCCHHHHHHHHH
Confidence 99999987 3321110 000000000 0 00011223477778999999999
Q ss_pred HHHHHHHhcCCCeEEe
Q 045962 204 WMNWLKTEIGFDGWRF 219 (423)
Q Consensus 204 ~l~~w~~~~gvDGfR~ 219 (423)
.-+.+.....+||+=+
T Consensus 127 IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 127 IYEDLARYSKFDGILF 142 (294)
T ss_pred HHHHHHhhCCCCeEEE
Confidence 9999998569999988
No 109
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=90.40 E-value=1.4 Score=42.79 Aligned_cols=63 Identities=29% Similarity=0.383 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGP 186 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (423)
+.+++++-|++||++|+||++-+ +.. ...
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~----------------------~~~------------------------ 86 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGA----------------------NGH------------------------ 86 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCC----------------------CCc------------------------
Confidence 56789999999999999999864 211 000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 045962 187 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 223 (423)
Q Consensus 187 ~~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~ 223 (423)
....++.-++.+.+.+..+++++|+||+-||-=.
T Consensus 87 ---~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 87 ---VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred ---cccCCHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 1134567888899999988899999999998644
No 110
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.30 E-value=2.1 Score=41.52 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=71.3
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCC-----CCCCCCCHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDL-----HASSYGSQNELKSLI 115 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~i-----d~~~~Gt~~~l~~lv 115 (423)
+.+.|.+.||.++..++|.+++-=.= ...|.+.+..|=.+ . ..+=|.+|+++||
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltD--------------------d~~~rle~~~~P~lt~~g~~-~~~yT~~di~elv 74 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHLTD--------------------DQGFRIESKKYPKLQQKASD-GLYYTQEQIREVV 74 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEEec--------------------CCCceeecCCCccccccCCC-CCccCHHHHHHHH
Confidence 36778888999999999988863110 01111111111111 1 1223789999999
Q ss_pred HHHHHcCCEEEEEE-ecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045962 116 QAFNKKGIKCLADI-VINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLN 194 (423)
Q Consensus 116 ~~aH~~Gi~VilD~-V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 194 (423)
+-|.++||.||-.+ +|.|+..--. . +.+ . ..+....... .... ..-+-||..+
T Consensus 75 ~yA~~rgI~vIPEId~PGH~~a~~~----~---ype--------l---~~~~~~~~~~-------~~~~-~~~~~l~~~~ 128 (311)
T cd06570 75 AYARDRGIRVVPEIDVPGHASAIAV----A---YPE--------L---ASGPGPYVIE-------RGWG-VFEPLLDPTN 128 (311)
T ss_pred HHHHHcCCEEEEeecCccchHHHHH----h---CHH--------h---ccCCCccccc-------cccc-cCCCccCCCC
Confidence 99999999999988 5677753110 0 000 0 0000000000 0000 0112389999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 045962 195 PRVQKELSDWMNWLKTEI 212 (423)
Q Consensus 195 p~v~~~~~~~l~~w~~~~ 212 (423)
|++.+++.+.+..+++-+
T Consensus 129 p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 129 EETYTFLDNLFGEMAELF 146 (311)
T ss_pred hhHHHHHHHHHHHHHHhC
Confidence 999999999999988643
No 111
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=90.07 E-value=0.62 Score=50.13 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=57.7
Q ss_pred CceeeeeeecccCCC-CCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCC
Q 045962 23 PTILFQGFNWESCNK-KGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH 101 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~-~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id 101 (423)
.+|.+|.|+..+..+ |.|||-.+.+-+|.+++.|.+.|+|+|+. .... ......+..|.+.+-+.++
T Consensus 62 aGill~l~SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~----------~t~~--~~~~~dSSPYsp~S~fAlN 129 (745)
T PLN03236 62 SGMALPVFSLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVN----------DTCV--HGTFWDSYPYSSLSVHALH 129 (745)
T ss_pred heeeeccccCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCC----------cCCC--CCCCCCCCCcCcccccccC
Confidence 378899998776643 57999999999999999999999999999 4300 0000122479999999999
Q ss_pred CCCCCCHHHHH
Q 045962 102 ASSYGSQNELK 112 (423)
Q Consensus 102 ~~~~Gt~~~l~ 112 (423)
|-|=+.+.+.
T Consensus 130 -PlyIdle~L~ 139 (745)
T PLN03236 130 -PLYLKLKELV 139 (745)
T ss_pred -hHHcCHHHhh
Confidence 8887766653
No 112
>PLN02950 4-alpha-glucanotransferase
Probab=90.04 E-value=0.67 Score=51.37 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=58.3
Q ss_pred CceeeeeeecccCCC-CCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCC
Q 045962 23 PTILFQGFNWESCNK-KGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH 101 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~-~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id 101 (423)
.++.+|.|+..+..+ +.|||.++.+-+|.+++.|.+.|+|+|+. +.... .....+..|.+.+-+.++
T Consensus 262 ~Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~----------~t~~~--~~~~~SsPYs~~S~falN 329 (909)
T PLN02950 262 AGVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVN----------DTSVH--GMWWDSYPYSSLSVFALH 329 (909)
T ss_pred eEEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCC----------CCCCC--CCCCCCCCcCcccccccC
Confidence 378899998766643 57999999999999999999999999998 43000 000122479999999999
Q ss_pred CCCCCCHHHHH
Q 045962 102 ASSYGSQNELK 112 (423)
Q Consensus 102 ~~~~Gt~~~l~ 112 (423)
|-|=+.+++.
T Consensus 330 -PlyI~l~~l~ 339 (909)
T PLN02950 330 -PLYLRVQALS 339 (909)
T ss_pred -hhhcCHHHHH
Confidence 8888776663
No 113
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=89.97 E-value=2.8 Score=41.32 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecccCCCCH-----HHHHHHHHhcCCCeEEEeec
Q 045962 197 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----SITRLYMKNTMPHFTVAEKW 247 (423)
Q Consensus 197 v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~-----~~~~~~~~~~~p~~~~gE~~ 247 (423)
+.+++..-++.++++|.+|.+=+|....-+. +-+...+++..|..++..-+
T Consensus 190 ~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~qp~~ii~~r~ 245 (346)
T PF01120_consen 190 YNEYWLAQLRELLTRYKPDILWFDGGWPDPDEDWDSAELYNWIRKLQPDVIINNRW 245 (346)
T ss_dssp HHHHHHHHHHHHHHCSTESEEEEESTTSCCCTHHHHHHHHHHHHHHSTTSEEECCC
T ss_pred hhhhhHHHHHHHHhCCCcceEEecCCCCccccccCHHHHHHHHHHhCCeEEEeccc
Confidence 4557778899999999999999999876332 22333466677755554433
No 114
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.59 E-value=3.6 Score=39.74 Aligned_cols=115 Identities=13% Similarity=0.115 Sum_probs=69.9
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC-CCCCCHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA-SSYGSQNELKSLIQAFN 119 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~-~~~Gt~~~l~~lv~~aH 119 (423)
+.+.+.+.++.++.+|+|.++|-=-- + |...++-.+.+ ...=|.+|++++++-|.
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D-----------~-------------f~~~~~p~~~~~~~~yT~~ei~ei~~yA~ 70 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYED-----------T-------------FPYEGEPEVGRMRGAYTKEEIREIDDYAA 70 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEec-----------c-------------eecCCCcccccCCCCcCHHHHHHHHHHHH
Confidence 46778888999999999999863210 0 00001111110 11127899999999999
Q ss_pred HcCCEEEEEE-ecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 045962 120 KKGIKCLADI-VINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQ 198 (423)
Q Consensus 120 ~~Gi~VilD~-V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~ 198 (423)
++||.||-.+ ++.|+..--+ . + .+.. .+ ..... --.||..+|++.
T Consensus 71 ~~gI~vIPeid~pGH~~~~l~--------~----~----~~~~--l~----~~~~~------------~~~l~~~~~~t~ 116 (301)
T cd06565 71 ELGIEVIPLIQTLGHLEFILK--------H----P----EFRH--LR----EVDDP------------PQTLCPGEPKTY 116 (301)
T ss_pred HcCCEEEecCCCHHHHHHHHh--------C----c----cccc--cc----ccCCC------------CCccCCCChhHH
Confidence 9999999865 3566642110 0 0 0000 00 00000 012889999999
Q ss_pred HHHHHHHHHHHHhcC
Q 045962 199 KELSDWMNWLKTEIG 213 (423)
Q Consensus 199 ~~~~~~l~~w~~~~g 213 (423)
+.+.+.+..+++.+.
T Consensus 117 ~fi~~li~ev~~~f~ 131 (301)
T cd06565 117 DFIEEMIRQVLELHP 131 (301)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999988554
No 115
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=89.58 E-value=0.87 Score=48.98 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=20.8
Q ss_pred CCCCCcccccCCCCCCCCCCHHHHHHHH
Q 045962 88 SLAGYMPGRLYDLHASSYGSQNELKSLI 115 (423)
Q Consensus 88 ~~~GY~~~d~~~id~~~~Gt~~~l~~lv 115 (423)
.+..|.+.+-+.++ |-|=+.+.+.++.
T Consensus 197 ~~SPYsp~Sr~alN-PlyI~~e~l~e~~ 223 (695)
T PRK11052 197 SASPYSPSSRRWLN-VIYIDVNAVEDFQ 223 (695)
T ss_pred CCCCcccccccccC-hHHcCHHHHhhhh
Confidence 45569999999999 8888777766653
No 116
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=89.50 E-value=6.9 Score=39.15 Aligned_cols=132 Identities=18% Similarity=0.077 Sum_probs=76.3
Q ss_pred hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 045962 49 IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLAD 128 (423)
Q Consensus 49 L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD 128 (423)
++-+|+.|...|-|+-=+ .+ |..-|.=...+|..++ ... ..+-+++|++||+++||++-+
T Consensus 87 a~~~k~AGakY~vlTaKH--HD---------------GF~lw~S~~t~~n~~~-~~p-krDiv~el~~A~rk~Glk~G~- 146 (384)
T smart00812 87 ADLFKKAGAKYVVLTAKH--HD---------------GFCLWDSKYSNWNAVD-TGP-KRDLVGELADAVRKRGLKFGL- 146 (384)
T ss_pred HHHHHHcCCCeEEeeeee--cC---------------CccccCCCCCCCcccC-CCC-CcchHHHHHHHHHHcCCeEEE-
Confidence 678899999999865433 11 1222222233555556 444 468899999999999999988
Q ss_pred EecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHH
Q 045962 129 IVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKEL---SDWM 205 (423)
Q Consensus 129 ~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~---~~~l 205 (423)
-|... +|+.. .|.+. . .........+...+++ ..-+
T Consensus 147 ---Y~S~~---------------------DW~~p-------~y~~~---~-------~~~~~~~~~~~~~~y~~~~~~Ql 185 (384)
T smart00812 147 ---YHSLF---------------------DWFNP-------LYAGP---T-------SSDEDPDNWPRFQEFVDDWLPQL 185 (384)
T ss_pred ---EcCHH---------------------HhCCC-------ccccc---c-------ccccccccchhHHHHHHHHHHHH
Confidence 12221 12110 00000 0 0000112234456666 7778
Q ss_pred HHHHHhcCCCeEEecccCCCCHH-----HHHHHHHhcCCCe
Q 045962 206 NWLKTEIGFDGWRFDFVKGYAPS-----ITRLYMKNTMPHF 241 (423)
Q Consensus 206 ~~w~~~~gvDGfR~D~a~~~~~~-----~~~~~~~~~~p~~ 241 (423)
+.+++.||-|.+=+|.+-.-+.+ -+.+.+++..|..
T Consensus 186 ~ELit~Ygpd~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 186 RELVTRYKPDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVK 226 (384)
T ss_pred HHHHhcCCCceEEEeCCCCCccchhcHHHHHHHHHHhCCCC
Confidence 89999999999999987533332 2333466666743
No 117
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=88.26 E-value=1.4 Score=42.74 Aligned_cols=35 Identities=17% Similarity=0.453 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 045962 190 IDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 225 (423)
Q Consensus 190 ln~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~ 225 (423)
+|..+|+.++.|.+.+...++ .|+|||-+|.+...
T Consensus 138 vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDsy 172 (315)
T TIGR01370 138 VKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDAF 172 (315)
T ss_pred EecccHHHHHHHHHHHHHHHH-cCCCeEeeccchhh
Confidence 788999999999999888776 99999999977664
No 118
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=88.20 E-value=0.81 Score=45.91 Aligned_cols=51 Identities=14% Similarity=0.323 Sum_probs=42.3
Q ss_pred CCCCCCCCC-----CCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHh
Q 045962 184 FGPAPDIDH-----LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKN 236 (423)
Q Consensus 184 ~~~~~dln~-----~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~ 236 (423)
|.+-++|++ .+|.++++|.++.+...+ -++|||+|.++.-|...-+.++++
T Consensus 360 WGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHSTPlhVaeylLd~ 415 (423)
T PF14701_consen 360 WGDCVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHSTPLHVAEYLLDA 415 (423)
T ss_pred cCceeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCCcHHHHHHHHHH
Confidence 456666776 568999999999999886 789999999999998877777554
No 119
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=87.71 E-value=2.3 Score=41.45 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=38.0
Q ss_pred HHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 045962 43 NFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKG 122 (423)
Q Consensus 43 ~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~G 122 (423)
+-+.+.|..+|++|+|+|..-=++.+. +. .- ...|| . +..+|+++++.|+++|
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~h-------e~----------~~--g~~df---~-----g~~dl~~f~~~a~~~g 76 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLH-------EP----------EE--GQFDF---T-----GNRDLDRFLDLAQENG 76 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHH-------SS----------BT--TB------S-----GGG-HHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhCCcceEEEecccccc-------CC----------CC--Ccccc---c-----chhhHHHHHHHHHHcC
Confidence 456788999999999999864333211 11 00 11222 1 2367999999999999
Q ss_pred CEEEEEEecccC
Q 045962 123 IKCLADIVINHR 134 (423)
Q Consensus 123 i~VilD~V~nh~ 134 (423)
|.||+-.=+-=+
T Consensus 77 l~vilrpGpyi~ 88 (319)
T PF01301_consen 77 LYVILRPGPYIC 88 (319)
T ss_dssp -EEEEEEES---
T ss_pred cEEEecccceec
Confidence 999988655433
No 120
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=87.44 E-value=0.57 Score=35.40 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=18.5
Q ss_pred EEEeecCCEEEEEE---CCEEEEEECCCCC
Q 045962 378 NILASQSDLYVAAI---DDKIITKIGPKMD 404 (423)
Q Consensus 378 ~~~~~~~~~~~~~r---~~~~lv~in~~~~ 404 (423)
..+.+.+++|+|.| +++++|++|++..
T Consensus 3 ~hf~P~~gvYvYfR~~~~~tVmVilN~n~~ 32 (78)
T PF10438_consen 3 KHFAPQDGVYVYFRYYDGKTVMVILNKNDK 32 (78)
T ss_dssp EE---BTTEEEEEEEESSEEEEEEEE-SSS
T ss_pred eeECccCCEEEEEEEcCCCEEEEEEcCCCC
Confidence 34567889999999 6788999997543
No 121
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=86.28 E-value=1.9 Score=37.64 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHhcCcccccc-------eEEEee----cCCEEEEEEC-------------CEEEEEECCCCC-cCccC
Q 045962 355 LKKEIGKLAAIRTKNGINTTSR-------VNILAS----QSDLYVAAID-------------DKIITKIGPKMD-LRNLI 409 (423)
Q Consensus 355 ~~~~~~~L~~lR~~~~~l~~g~-------~~~~~~----~~~~~~~~r~-------------~~~lv~in~~~~-~~~~~ 409 (423)
..+.++.|++||+++|.|+-+. ...... .+++++...+ +.+||++|.+.. +...+
T Consensus 43 a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~~~t~~~ 122 (168)
T PF11852_consen 43 ASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPEEQTFTV 122 (168)
T ss_dssp HHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS-EEEET
T ss_pred HHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCCeEEEEc
Confidence 6789999999999999998764 333333 3689998852 359999996543 33344
Q ss_pred Cc
Q 045962 410 PR 411 (423)
Q Consensus 410 ~~ 411 (423)
|.
T Consensus 123 ~~ 124 (168)
T PF11852_consen 123 PG 124 (168)
T ss_dssp GG
T ss_pred CC
Confidence 53
No 122
>PLN02950 4-alpha-glucanotransferase
Probab=85.65 E-value=2.2 Score=47.43 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecccCCCCC
Q 045962 109 NELKSLIQAFNKKGIKCLADIVINHRTAEK 138 (423)
Q Consensus 109 ~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~ 138 (423)
++++++.+.|+++||+++-|+.+. ++.++
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig-V~~dS 489 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG-VDRNS 489 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCc
Confidence 668889999999999999999996 44443
No 123
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=85.17 E-value=1.8 Score=40.26 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=38.8
Q ss_pred CCcHHHH-------HhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHH
Q 045962 39 GGWYNFL-------KKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNEL 111 (423)
Q Consensus 39 ~G~~~~~-------~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l 111 (423)
|||+..+ .+-++++|++||++|.++-=+ ..+. .++.
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGt-------------------------------i~l~------~~~r 115 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGT-------------------------------IDLP------EEER 115 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SS-------------------------------S---------HHHH
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCc-------------------------------eeCC------HHHH
Confidence 6777653 344889999999999965422 3344 5889
Q ss_pred HHHHHHHHHcCCEEEEEEe
Q 045962 112 KSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 112 ~~lv~~aH~~Gi~VilD~V 130 (423)
.++|+.|+++|++|+-.+=
T Consensus 116 ~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 116 LRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHCCCEEeeccc
Confidence 9999999999999998764
No 124
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=84.86 E-value=2.6 Score=43.11 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE-ecccCCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADI-VINHRTA 136 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~-V~nh~~~ 136 (423)
|.+|+++||+-|+++||.||-.+ +|.|+..
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHH
Confidence 79999999999999999999988 5678753
No 125
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=84.66 E-value=1 Score=44.29 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=73.8
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCC-----------CCCCCCCHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDL-----------HASSYGSQN 109 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~i-----------d~~~~Gt~~ 109 (423)
+.+.|.+.++.+...++|.++|---- ...+.+....+-.+ + . +=|.+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D--------------------~~~~~~~~~~~p~l~~~ga~~~~~~~-~-~yT~~ 73 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSD--------------------DQGFRLESKSYPELTEKGAYRPSDAG-G-YYTKE 73 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEES--------------------STCB-BEBSTSTHHHHTTTESTTCTE-S-EBEHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEec--------------------CCCCccccCCCccccccCcccccccc-c-cCCHH
Confidence 47788889999999999999974321 01111111111000 1 1 33689
Q ss_pred HHHHHHHHHHHcCCEEEEEE-ecccCCCCCCCCcccceeccCCC-CCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 045962 110 ELKSLIQAFNKKGIKCLADI-VINHRTAEKKDRRGIWCIFEGGT-PDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPA 187 (423)
Q Consensus 110 ~l~~lv~~aH~~Gi~VilD~-V~nh~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (423)
|+++||+.|+++||+||-.+ +|.|++.--. .+..+.... +. ...+... .+....-
T Consensus 74 di~~lv~yA~~~gI~VIPeid~PGH~~~~l~----~~p~~~~~~~~~-~~~~~~~------------------~~~~~~~ 130 (351)
T PF00728_consen 74 DIRELVAYAKERGIEVIPEIDTPGHAEAWLK----AYPELGCSAWPE-DKSWPNS------------------TCWYPDN 130 (351)
T ss_dssp HHHHHHHHHHHTT-EEEEEEEESSS-HHHHH----HHHHHCCCHTTC-SSSCEEE------------------ETTSEEE
T ss_pred HHHHHHHHHHHcCCceeeeccCchHHHHHHH----hCchhhcccccc-ccccccc------------------cccCCCc
Confidence 99999999999999999998 5677753210 000000000 00 0000000 0000001
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 045962 188 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 219 (423)
Q Consensus 188 ~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~ 219 (423)
..+|..+|++.+.+.+.+..+++-+.-.-|.+
T Consensus 131 ~~l~~~~~~t~~~~~~l~~e~~~~f~~~~iHi 162 (351)
T PF00728_consen 131 GVLDPSNPETYEFLKDLLDEVADLFPSKYIHI 162 (351)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHHHHTSSEEEE
T ss_pred ccCCCCcHHHHHHHHHHHHHHHhhCCCCeEEe
Confidence 12899999999999999999998777666665
No 126
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=84.52 E-value=3.4 Score=39.97 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 045962 192 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 223 (423)
Q Consensus 192 ~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~ 223 (423)
.++|..|+.+++.+..+++++|.||+-+|--.
T Consensus 82 l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~ 113 (313)
T cd02874 82 LSNPEARQRLINNILALAKKYGYDGVNIDFEN 113 (313)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence 45788999999999888888999999999744
No 127
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=83.59 E-value=2.1 Score=46.25 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecccCCCCC
Q 045962 109 NELKSLIQAFNKKGIKCLADIVINHRTAEK 138 (423)
Q Consensus 109 ~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~ 138 (423)
..++++.+.|+++||+++-|+.+. ++.++
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg-Va~dS 302 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG-VDKAS 302 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCc
Confidence 668888999999999999999997 44443
No 128
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=83.12 E-value=3.2 Score=39.83 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=40.5
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcc--------cccCCCCCCCCCCHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMP--------GRLYDLHASSYGSQNELK 112 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~--------~d~~~id~~~~Gt~~~l~ 112 (423)
+...+..-|+.+|+-|||.|++.=+-+. .+... ....|+.+ .|+..++ +.| -+-+.
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~--------~~~~~-----~n~~~~~~~~~~~~~~~d~~~~N-~~Y--F~~~d 91 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQW--------DGYNT-----PNRYGFAPFPDEDPGQFDFTRPN-PAY--FDHLD 91 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSS--------S-B---------TTS-BS-SSTT------TT-----H--HHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCc--------ccccc-----cccCCCcCCCCCCccccCCCCCC-HHH--HHHHH
Confidence 3456666799999999999998654422 11000 01112222 4677777 766 68899
Q ss_pred HHHHHHHHcCCEEEEEEeccc
Q 045962 113 SLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 113 ~lv~~aH~~Gi~VilD~V~nh 133 (423)
+.|+.|.++||.+ ++|+=|
T Consensus 92 ~~i~~a~~~Gi~~--~lv~~w 110 (289)
T PF13204_consen 92 RRIEKANELGIEA--ALVPFW 110 (289)
T ss_dssp HHHHHHHHTT-EE--EEESS-
T ss_pred HHHHHHHHCCCeE--EEEEEE
Confidence 9999999999988 577765
No 129
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=82.65 E-value=2.7 Score=40.33 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=33.4
Q ss_pred HHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 045962 43 NFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKG 122 (423)
Q Consensus 43 ~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~G 122 (423)
+.....+++||+||+|+|-+ |+|| |.. +-.+..+++.+.|
T Consensus 53 ~~C~rDi~~l~~LgiNtIRV-----------------------------------Y~vd-p~~----nHd~CM~~~~~aG 92 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRV-----------------------------------YSVD-PSK----NHDECMSAFADAG 92 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-----------------------------------S----TTS------HHHHHHHHHTT
T ss_pred HHHHHhHHHHHHcCCCEEEE-----------------------------------EEeC-CCC----CHHHHHHHHHhCC
Confidence 34444588999999999963 3444 322 2444555666789
Q ss_pred CEEEEEEecccCCCCCC
Q 045962 123 IKCLADIVINHRTAEKK 139 (423)
Q Consensus 123 i~VilD~V~nh~~~~~~ 139 (423)
|.||+|+-.-+.+.+..
T Consensus 93 IYvi~Dl~~p~~sI~r~ 109 (314)
T PF03198_consen 93 IYVILDLNTPNGSINRS 109 (314)
T ss_dssp -EEEEES-BTTBS--TT
T ss_pred CEEEEecCCCCccccCC
Confidence 99999998887766543
No 130
>TIGR03356 BGL beta-galactosidase.
Probab=82.36 E-value=4.2 Score=41.36 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=45.6
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
..+.-..+.++.+|+||++++-++=-+ .. ..+ .|- -.++ -...+-.+++|++|+
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~W----------sr-i~p-------~g~-----~~~n---~~~~~~y~~~i~~l~ 104 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAW----------PR-IFP-------EGT-----GPVN---PKGLDFYDRLVDELL 104 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccch----------hh-ccc-------CCC-----CCcC---HHHHHHHHHHHHHHH
Confidence 357788899999999999999875433 21 111 010 0122 123567899999999
Q ss_pred HcCCEEEEEEe
Q 045962 120 KKGIKCLADIV 130 (423)
Q Consensus 120 ~~Gi~VilD~V 130 (423)
++||++|+++.
T Consensus 105 ~~gi~pivtL~ 115 (427)
T TIGR03356 105 EAGIEPFVTLY 115 (427)
T ss_pred HcCCeeEEeec
Confidence 99999999986
No 131
>PRK15452 putative protease; Provisional
Probab=81.58 E-value=12 Score=38.21 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~Vil 127 (423)
+.+++++.|+.||++|.+|.+
T Consensus 44 ~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 44 NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred CHHHHHHHHHHHHHcCCEEEE
Confidence 357899999999999999987
No 132
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=81.05 E-value=16 Score=39.29 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=74.9
Q ss_pred HHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH-HcCC
Q 045962 45 LKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN-KKGI 123 (423)
Q Consensus 45 ~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH-~~Gi 123 (423)
+-.-+++++++|+|+|+|-.+- .. +.+|..+.=|-|..+.-+- .+-|-+.+=+++ +.|+
T Consensus 336 l~~l~~ri~~~~~~~VyLqafa----------dp----~gdg~~~~lYFpnr~lPmr------aDlfnrvawql~tR~~v 395 (672)
T PRK14581 336 LDKLVQRISDLRVTHVFLQAFS----------DP----KGDGNIRQVYFPNRWIPMR------QDLFNRVVWQLASRPDV 395 (672)
T ss_pred HHHHHHHHHhcCCCEEEEEeee----------CC----CCCCceeeEEecCCcccHH------HhhhhHHHHHHHhhhCc
Confidence 4445789999999999998877 22 0111222235555544443 345667755555 5599
Q ss_pred EEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 045962 124 KCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKELSD 203 (423)
Q Consensus 124 ~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~ 203 (423)
+|+..+..--..-....+.. ..|... .+.. ...-...+.|..-+|++|+.|.+
T Consensus 396 ~vyAWmpvl~~~l~~~~~~~-------------~~~~~~------------~~~~--~~~~~~y~rlspf~~~~~~~i~~ 448 (672)
T PRK14581 396 EVYAWMPVLAFDMDPSLPRI-------------TRIDPK------------TGKT--SIDPDQYRRLSPFNPEVRQRIID 448 (672)
T ss_pred eEEEeeehhhccCCcccchh-------------hhcccc------------cCcc--ccCCCCccccCCCCHHHHHHHHH
Confidence 99999987533221100000 001000 0000 00001233477778999999999
Q ss_pred HHHHHHHhcCCCeEEe
Q 045962 204 WMNWLKTEIGFDGWRF 219 (423)
Q Consensus 204 ~l~~w~~~~gvDGfR~ 219 (423)
.-..+.....+||+=+
T Consensus 449 iy~DLa~~~~~~Gilf 464 (672)
T PRK14581 449 IYRDMAYSAPIDGIIY 464 (672)
T ss_pred HHHHHHhcCCCCeEEe
Confidence 9999998559999988
No 133
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=78.55 E-value=3.5 Score=40.53 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 045962 195 PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 225 (423)
Q Consensus 195 p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~ 225 (423)
++.+..+++.|...++.+|+||+=||.=...
T Consensus 85 ~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~ 115 (339)
T cd06547 85 EDGSFPVADKLVEVAKYYGFDGWLINIETEL 115 (339)
T ss_pred cccchHHHHHHHHHHHHhCCCceEeeeeccC
Confidence 4556677888888888899999999987766
No 134
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=78.44 E-value=11 Score=33.66 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 045962 193 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 224 (423)
Q Consensus 193 ~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~ 224 (423)
.++..|+.+++.+..+++++|.||+-+|--..
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~ 115 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEYP 115 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeCC
Confidence 56788888999988899899999999996543
No 135
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=78.23 E-value=6.8 Score=35.77 Aligned_cols=79 Identities=10% Similarity=0.094 Sum_probs=46.4
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCC
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHA 102 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~ 102 (423)
+.+++..|+ | +-+.+.+-.+.|+++|+..|.|+|.++++.... .. =...|...+.-.
T Consensus 133 R~~vIPg~n-d-------~~e~i~~ia~~l~~l~~~~~~llpyh~~g~~Ky---~~---------lg~~y~~~~~~~--- 189 (213)
T PRK10076 133 RLPLIPGFT-L-------SRENMQQALDVLIPLGIKQIHLLPFHQYGEPKY---RL---------LGKTWSMKEVPA--- 189 (213)
T ss_pred EEEEECCCC-C-------CHHHHHHHHHHHHHcCCceEEEecCCccchhHH---HH---------cCCcCccCCCCC---
Confidence 344555665 3 345566666777788888888888883211000 00 000122222111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
=+.+.++++.+.+.++|+.|++
T Consensus 190 ---~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 190 ---PSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred ---cCHHHHHHHHHHHHHcCCeEEe
Confidence 2578999999999999999964
No 136
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=76.75 E-value=5.4 Score=40.26 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=39.8
Q ss_pred HHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCC---CHHHHHHHHHHHHHc
Q 045962 45 LKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYG---SQNELKSLIQAFNKK 121 (423)
Q Consensus 45 ~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~G---t~~~l~~lv~~aH~~ 121 (423)
.++-+.++|+.|+|+|-|+=-+ .. + .+.+- .+ |.+= ...-+.+.|+.|.+.
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~----------~~-----------~--~~~~~--~~-p~~~~~~~~~~ld~~I~~a~~~ 128 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGY----------WA-----------L--QATDG--DN-PYLIGLTQLKILDEAINWAKKL 128 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccch----------hh-----------h--hccCC--CC-CCeecchHHHHHHHHHHHHHhc
Confidence 3677899999999999874332 12 0 11100 33 3222 233578889999999
Q ss_pred CCEEEEEEe
Q 045962 122 GIKCLADIV 130 (423)
Q Consensus 122 Gi~VilD~V 130 (423)
||+|++|+.
T Consensus 129 gi~V~iD~H 137 (407)
T COG2730 129 GIYVLIDLH 137 (407)
T ss_pred CeeEEEEec
Confidence 999999974
No 137
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=76.21 E-value=7.7 Score=40.05 Aligned_cols=78 Identities=12% Similarity=0.088 Sum_probs=53.5
Q ss_pred HHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 045962 42 YNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKK 121 (423)
Q Consensus 42 ~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~ 121 (423)
-+.+.+.++..|+.||....|== +|+.+ ..+.-=+.-|++.-. +.|++ .+..||++.|++
T Consensus 308 ~e~ile~vk~akk~gvE~FvlDD---------Gwfg~--------rndd~~slGDWlv~s-eKfPs--giE~li~~I~e~ 367 (687)
T COG3345 308 EEEILENVKEAKKFGVELFVLDD---------GWFGG--------RNDDLKSLGDWLVNS-EKFPS--GIEELIEAIAEN 367 (687)
T ss_pred HHHHHHHHHHHhhcCeEEEEEcc---------ccccc--------cCcchhhhhceecch-hhccc--cHHHHHHHHHHc
Confidence 56899999999999976665422 22233 222223444555555 77763 466788889999
Q ss_pred CCEEEEEEecccCCCCCC
Q 045962 122 GIKCLADIVINHRTAEKK 139 (423)
Q Consensus 122 Gi~VilD~V~nh~~~~~~ 139 (423)
|+..=+.+-+--++.++.
T Consensus 368 Gl~fGIWlePemvs~dSd 385 (687)
T COG3345 368 GLIFGIWLEPEMVSEDSD 385 (687)
T ss_pred CCccceeecchhcccchH
Confidence 999999999887777764
No 138
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=75.80 E-value=26 Score=32.96 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH
Q 045962 193 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP 227 (423)
Q Consensus 193 ~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~ 227 (423)
++++-|+.+.+.+..+++++|+||+-+|-=.....
T Consensus 92 ~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~ 126 (256)
T cd06546 92 DDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSL 126 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCH
Confidence 34566666777777788889999999987554433
No 139
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=75.46 E-value=16 Score=37.20 Aligned_cols=30 Identities=13% Similarity=0.408 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE-ecccCCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADI-VINHRTA 136 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~-V~nh~~~ 136 (423)
|.+|.+++|+-|.-|||+|+..+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 68999999999999999999988 5778764
No 140
>PRK15447 putative protease; Provisional
Probab=74.92 E-value=10 Score=36.53 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=40.2
Q ss_pred eeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCH
Q 045962 29 GFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQ 108 (423)
Q Consensus 29 ~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~ 108 (423)
-|.|. .|++..+ ...|++.|+++||+.-.. -+ ... .| +.
T Consensus 9 ~~~~p-----~~~~~~~---~~~~~~~gaDaVY~g~~~----------~~-------~R~---------------~f-~~ 47 (301)
T PRK15447 9 LYYWP-----KETVRDF---YQRAADSPVDIVYLGETV----------CS-------KRR---------------EL-KV 47 (301)
T ss_pred ccCCC-----CCCHHHH---HHHHHcCCCCEEEECCcc----------CC-------Ccc---------------CC-CH
Confidence 36675 3555444 456788999999997322 12 011 11 46
Q ss_pred HHHHHHHHHHHHcCCEEEE
Q 045962 109 NELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 109 ~~l~~lv~~aH~~Gi~Vil 127 (423)
+++++.|+.||++|.+|++
T Consensus 48 ~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 48 GDWLELAERLAAAGKEVVL 66 (301)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 8899999999999999998
No 141
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=73.87 E-value=6.8 Score=38.06 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=27.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccc
Q 045962 100 LHASSYGSQNELKSLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 100 id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh 133 (423)
++ -.+ +.+++.+.++.+|++||+|.+++.++.
T Consensus 148 in-Kg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 148 IN-KGS-TFEDFIRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred hC-CCC-CHHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 44 444 789999999999999999999999973
No 142
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=73.48 E-value=22 Score=34.92 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEK 138 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~ 138 (423)
.+.++++++++|++|-++++-+ +|.+...
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~ 107 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQL--WHAGRQA 107 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEE--E--GGGS
T ss_pred HHHHHHHHHHHHhcCccceeec--ccccccc
Confidence 6789999999999999999886 6776543
No 143
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=71.49 E-value=15 Score=29.62 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=30.0
Q ss_pred ceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 24 TILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 24 ~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
++-+-+|. ...| =.-+.+..++..|++-|+++|+|+.-.
T Consensus 37 ~~elvgf~-~CgG---Cpg~~~~~~~~~l~~~~~d~IHlssC~ 75 (107)
T PF08821_consen 37 DVELVGFF-TCGG---CPGRKLVRRIKKLKKNGADVIHLSSCM 75 (107)
T ss_pred CeEEEEEe-eCCC---CChhHHHHHHHHHHHCCCCEEEEcCCE
Confidence 47777885 4332 124678889999999999999999987
No 144
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=71.46 E-value=56 Score=32.53 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
.+.+++|++++|++|-++++-+. |.+..
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~ 109 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAH 109 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCC
Confidence 68899999999999999998875 88754
No 145
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=71.18 E-value=30 Score=33.43 Aligned_cols=98 Identities=13% Similarity=0.034 Sum_probs=60.0
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+.+.=.+.+..+++.|.|+=.--| +. ..+|.-.-...|.-+ ..++|++|+++|++
T Consensus 13 s~e~R~~l~~f~~~~kmN~YiYAP------------Kd--------Dpyhr~~Wre~Yp~~-----el~~l~~L~~~a~~ 67 (306)
T PF07555_consen 13 SHEDRLDLIRFLGRYKMNTYIYAP------------KD--------DPYHRSKWREPYPEE-----ELAELKELADAAKA 67 (306)
T ss_dssp -HHHHHHHHHHHHHTT--EEEE--------------TT---------TTTTTTTTS---HH-----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceEEECC------------CC--------ChHHHhhhcccCCHH-----HHHHHHHHHHHHHH
Confidence 356667778888999999776555 22 223322222222222 36889999999999
Q ss_pred cCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 045962 121 KGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKE 200 (423)
Q Consensus 121 ~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~ 200 (423)
.|++++.=+-|... ++++.++..+.
T Consensus 68 ~~V~Fv~aisPg~~-------------------------------------------------------~~~s~~~d~~~ 92 (306)
T PF07555_consen 68 NGVDFVYAISPGLD-------------------------------------------------------ICYSSEEDFEA 92 (306)
T ss_dssp TT-EEEEEEBGTTT---------------------------------------------------------TSHHHHHHH
T ss_pred cCCEEEEEECcccc-------------------------------------------------------cccCcHHHHHH
Confidence 99998876655311 33446778888
Q ss_pred HHHHHHHHHHhcCCCeEEe
Q 045962 201 LSDWMNWLKTEIGFDGWRF 219 (423)
Q Consensus 201 ~~~~l~~w~~~~gvDGfR~ 219 (423)
|++-+..+.+ .||+-|-+
T Consensus 93 L~~K~~ql~~-lGvr~Fai 110 (306)
T PF07555_consen 93 LKAKFDQLYD-LGVRSFAI 110 (306)
T ss_dssp HHHHHHHHHC-TT--EEEE
T ss_pred HHHHHHHHHh-cCCCEEEE
Confidence 9999999987 99999988
No 146
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=70.88 E-value=8.3 Score=38.02 Aligned_cols=84 Identities=26% Similarity=0.403 Sum_probs=56.0
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCC-----------------
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH----------------- 101 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id----------------- 101 (423)
.|=-++|.=.++-|+.-|-|.+.--|=|++ +.. ...++|-.+. +|++-
T Consensus 133 sGC~qAIe~~i~~LA~p~aNILlPrPGfp~-------Y~~-------~a~~~~lEVR-~ydlLPe~~weIDL~~veal~D 197 (447)
T KOG0259|consen 133 SGCSQAIELAISSLANPGANILLPRPGFPL-------YDT-------RAIYSGLEVR-YYDLLPEKDWEIDLDGVEALAD 197 (447)
T ss_pred ccchHHHHHHHHHhcCCCCceecCCCCCch-------HHH-------hhhhcCceeE-eecccCcccceechHHHHHhhc
Confidence 455667777788899999998887776632 111 1223332222 11111
Q ss_pred -----------CCCCC---CHHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 102 -----------ASSYG---SQNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 102 -----------~~~~G---t~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
...=| |.+-|+++.+.||+.||-||.|-|+.|+--.
T Consensus 198 ENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 198 ENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred cCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 01123 5899999999999999999999999999643
No 147
>PRK07094 biotin synthase; Provisional
Probab=70.72 E-value=8.7 Score=37.33 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=31.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 97 ~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
+-.+. + -.+.++..+.++.+|+.||.|..++++++-+..
T Consensus 155 ~~~i~-~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget 193 (323)
T PRK07094 155 YAKLH-P-GMSFENRIACLKDLKELGYEVGSGFMVGLPGQT 193 (323)
T ss_pred HHHhC-C-CCCHHHHHHHHHHHHHcCCeecceEEEECCCCC
Confidence 33455 5 367899999999999999999999999976543
No 148
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=70.53 E-value=58 Score=30.59 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=37.1
Q ss_pred HHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 045962 44 FLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGI 123 (423)
Q Consensus 44 ~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi 123 (423)
.+.+.++.++++|+++|.|.+.. .. . ...+.+ + +.++++++.+.+.++||
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~----------~~----------~-~~~~~~--------~-~~~~~~~l~~~l~~~Gl 66 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDE----------SD----------E-RLARLD--------W-SKEERLSLVKAIYETGV 66 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCC----------cc----------c-cccccc--------C-CHHHHHHHHHHHHHcCC
Confidence 46778999999999999986432 10 0 001111 1 24678999999999999
Q ss_pred EEEE
Q 045962 124 KCLA 127 (423)
Q Consensus 124 ~Vil 127 (423)
+|..
T Consensus 67 ~i~~ 70 (284)
T PRK13210 67 RIPS 70 (284)
T ss_pred CceE
Confidence 9874
No 149
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.23 E-value=56 Score=31.97 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
.+.+++|++++|++|-++++-+ +|.+..
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~ 108 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL--NHPGRQ 108 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCcC
Confidence 6789999999999999998775 587654
No 150
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=69.00 E-value=4.7 Score=38.73 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
++++++++.+.||++||+|.+|-.
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 489999999999999999999964
No 151
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=68.70 E-value=56 Score=32.26 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
.+.++++++++|++|-++++ =++|.+..
T Consensus 77 i~~~~~l~~~vh~~G~~i~~--QL~h~G~~ 104 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAIL--QIFHAGRM 104 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEE--EecCCCCC
Confidence 68899999999999999884 46787754
No 152
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=68.41 E-value=11 Score=37.55 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEEecccCCCC
Q 045962 104 SYGSQNELKSLIQAFNKKGIK-CLADIVINHRTAE 137 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~-VilD~V~nh~~~~ 137 (423)
+-.+.++..+.++.+++.|+. |.+|++++..+..
T Consensus 139 R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt 173 (375)
T PRK05628 139 RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGES 173 (375)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCC
Confidence 335788999999999999999 9999999876543
No 153
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=67.24 E-value=1e+02 Score=30.82 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccC-CC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHR-TA 136 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~-~~ 136 (423)
.+.++++++++|++|-++++-+ +|. +.
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr 109 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGR 109 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCC
Confidence 4779999999999999999766 575 54
No 154
>PTZ00445 p36-lilke protein; Provisional
Probab=66.82 E-value=15 Score=33.45 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=38.8
Q ss_pred HHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCC--HHHHHHHHHHHHH
Q 045962 43 NFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS--QNELKSLIQAFNK 120 (423)
Q Consensus 43 ~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt--~~~l~~lv~~aH~ 120 (423)
+.+..-.+.|++.||.+|-. .+ .+ +--...+.||.--+ +-+ ..+++ ..+|+.+++++++
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~----D~--------Dn----TlI~~HsgG~~~~~--~~~-~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIAS----DF--------DL----TMITKHSGGYIDPD--NDD-IRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEe----cc--------hh----hhhhhhcccccCCC--cch-hhhhccCCHHHHHHHHHHHH
Confidence 34444467899999999964 11 10 00012233443332 122 33332 3669999999999
Q ss_pred cCCEEEE
Q 045962 121 KGIKCLA 127 (423)
Q Consensus 121 ~Gi~Vil 127 (423)
.||+|++
T Consensus 90 ~~I~v~V 96 (219)
T PTZ00445 90 SNIKISV 96 (219)
T ss_pred CCCeEEE
Confidence 9999974
No 155
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=66.54 E-value=14 Score=38.17 Aligned_cols=32 Identities=9% Similarity=0.130 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHcCC-EEEEEEecccCCC
Q 045962 105 YGSQNELKSLIQAFNKKGI-KCLADIVINHRTA 136 (423)
Q Consensus 105 ~Gt~~~l~~lv~~aH~~Gi-~VilD~V~nh~~~ 136 (423)
-.+.++..+.++.|++.|+ .|-+|+.++-.+.
T Consensus 301 ~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgE 333 (488)
T PRK08207 301 HHTVEDIIEKFHLAREMGFDNINMDLIIGLPGE 333 (488)
T ss_pred CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCC
Confidence 3578999999999999999 7889999986553
No 156
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.20 E-value=86 Score=31.12 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
.+.++++++++|++|-++++-+ +|.+..
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~ 104 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL--WHVGAM 104 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCC
Confidence 6789999999999999988876 777654
No 157
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.14 E-value=33 Score=33.24 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEK 138 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~ 138 (423)
.+.+|++++++|++|-++++-+ +|.+...
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~ 104 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQL--AHAGRQA 104 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHh--hCCCcCC
Confidence 6889999999999999987654 7777543
No 158
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=64.90 E-value=13 Score=37.88 Aligned_cols=31 Identities=10% Similarity=0.235 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHcCCEEE-EEEecccCCCC
Q 045962 107 SQNELKSLIQAFNKKGIKCL-ADIVINHRTAE 137 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~Vi-lD~V~nh~~~~ 137 (423)
+.++..+.++.+++.|+.+| +|+.++.-+..
T Consensus 175 ~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 175 KRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 68899999999999999865 99999866543
No 159
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=64.53 E-value=49 Score=31.22 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
+++.+.++...+ .|+|.+++ |++..+.++-..++++.+
T Consensus 138 ~~~~~~~~~~~~-~g~~~i~l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 138 EELLELLELVNE-IKPDVFYIVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred HHHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 356777777765 89999999 999999887777765544
No 160
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=63.10 E-value=16 Score=36.20 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEEecccCCCC
Q 045962 104 SYGSQNELKSLIQAFNKKGIK-CLADIVINHRTAE 137 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~-VilD~V~nh~~~~ 137 (423)
+-.+.++..+.++.+++.|+. |-+|+.++..+..
T Consensus 131 R~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 165 (360)
T TIGR00539 131 RQHSAKNIAPAIETALKSGIENISLDLMYGLPLQT 165 (360)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCC
Confidence 446789999999999999996 7899999876543
No 161
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=62.41 E-value=18 Score=37.30 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++..+.++.||++||.|..+++++.-+
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlPg 349 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLPG 349 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCCC
Confidence 67889999999999999999999997654
No 162
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=62.21 E-value=23 Score=34.36 Aligned_cols=100 Identities=10% Similarity=0.011 Sum_probs=61.0
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccc-ccccccc--ccCCCCCCCC------c
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLF-FHSIIHQ--AYSHASLAGY------M 93 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~-~~~~~~~--~~~~~~~~GY------~ 93 (423)
+.+-+||.+ +.+. -|.+...+++..|.+.|++.|-+.=+-.-..+.... .+...-+ .+-+.. +.. .
T Consensus 18 ~PI~VQSMt-nt~T---~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd-~~lAl~a~~~ 92 (346)
T TIGR00612 18 APIVVQSMT-NTDT---IDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFD-YRLAALAMAK 92 (346)
T ss_pred CcEEEEecC-CCCc---hhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCC-cHHHHHHHHh
Confidence 578899998 6555 378999999999999999999986433100000000 0000000 000000 111 1
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 94 PGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 94 ~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
-.|=..|+|.++|+.+-++++|++|+++|+-+=+
T Consensus 93 g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRI 126 (346)
T TIGR00612 93 GVAKVRINPGNIGFRERVRDVVEKARDHGKAMRI 126 (346)
T ss_pred ccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 1233456688999999999999999999976643
No 163
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=62.08 E-value=12 Score=39.02 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCCeEEecccCCC------C----------------HHHHHHHHHhcCC-CeEEEeecCCCcccCCC
Q 045962 200 ELSDWMNWLKTEIGFDGWRFDFVKGY------A----------------PSITRLYMKNTMP-HFTVAEKWDSLSYRQDG 256 (423)
Q Consensus 200 ~~~~~l~~w~~~~gvDGfR~D~a~~~------~----------------~~~~~~~~~~~~p-~~~~gE~~~~~~~~~~~ 256 (423)
..++.+++-++ .+|++|||.+..+ | .++++.+..+... ..+|||-.+.-
T Consensus 293 ww~~rlr~~~~--~~d~lRIDHf~Gf~r~w~IP~g~~ta~~G~wv~~Pg~~l~~~l~~e~~~~~~vIaEDLG~v------ 364 (513)
T TIGR00217 293 WWIKRLGANMQ--YADILRIDHFRGFVSLWWVPAGESTAFNGAWVHYPGDDFFNILANESKDNLKIIGEDLGTV------ 364 (513)
T ss_pred HHHHHHHHHHH--hCCeEEecchhhhceeeeecCCCCCCCCCeeEeCCHHHHHHHHHHHcCCCCcEEeeeCCCC------
Confidence 45556666665 7888999998875 2 2466666666555 67899987431
Q ss_pred ccchhhhHHHHHHHHHHHHhCCc---cccccchhhhHhhhCCCCccCCCCCCceeccCCCCCCC
Q 045962 257 KLDARQDAHRRNLKYWVQAAGRA---VTAFDFTTKGILQAAPPGFIGLLPQNAVTFIDNHDTGS 317 (423)
Q Consensus 257 ~~~y~~~~~~~~~~~~~~~~~~~---~~~~df~~~~~l~~~~~~~~~~~~~~~~~f~~nHD~~r 317 (423)
...+...+...+-. +..|.|.... ....+...++.++|.++.+||+..
T Consensus 365 ---------~~~Vr~ll~~~gipGmkVl~Fe~~~~~----~~~~~P~~y~~~~v~ytgTHD~dt 415 (513)
T TIGR00217 365 ---------PEEVSRLRDEFNFPGMKVLYFAFDFDS----SNRNLPHNYPKNAIVYTGTHDNDL 415 (513)
T ss_pred ---------CHHHHHHHHHcCCCCceEeEecccCCC----CCCCCcccCCcCcEEEecCCcchh
Confidence 22333333332211 1112211000 011113456778999999999954
No 164
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=61.46 E-value=13 Score=38.75 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=46.8
Q ss_pred HhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 045962 46 KKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKC 125 (423)
Q Consensus 46 ~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~V 125 (423)
.++|+.|+++|++.|.|.. .+ .++ .+ ...++ +--+.++..+.++.+++.|++|
T Consensus 206 ~e~L~~L~~~G~~rVslGV------------QS--------~~d---~V--L~~in--Rght~~~v~~Ai~~lr~~G~~v 258 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGV------------QT--------IYN---DI--LERTK--RGHTVRDVVEATRLLRDAGLKV 258 (522)
T ss_pred HHHHHHHHHcCCCEEEEEC------------cc--------CCH---HH--HHHhC--CCCCHHHHHHHHHHHHHcCCeE
Confidence 4779999999999999765 22 000 11 12232 3346888999999999999999
Q ss_pred EEEEecccCCC
Q 045962 126 LADIVINHRTA 136 (423)
Q Consensus 126 ilD~V~nh~~~ 136 (423)
.+|+.++--+.
T Consensus 259 ~~~LM~GLPgq 269 (522)
T TIGR01211 259 VYHIMPGLPGS 269 (522)
T ss_pred EEEeecCCCCC
Confidence 99999986553
No 165
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=61.25 E-value=16 Score=36.13 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHcCCE-EEEEEecccCCC
Q 045962 105 YGSQNELKSLIQAFNKKGIK-CLADIVINHRTA 136 (423)
Q Consensus 105 ~Gt~~~l~~lv~~aH~~Gi~-VilD~V~nh~~~ 136 (423)
-.+.++..+.++.+++.|+. |-+|+.++..+.
T Consensus 135 ~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgq 167 (353)
T PRK05904 135 THTIQDSKEAINLLHKNGIYNISCDFLYCLPIL 167 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCC
Confidence 45789999999999999997 999999987653
No 166
>PRK05660 HemN family oxidoreductase; Provisional
Probab=61.12 E-value=19 Score=35.99 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=43.0
Q ss_pred hhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEE-
Q 045962 47 KRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKC- 125 (423)
Q Consensus 47 ~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~V- 125 (423)
++|..|+++|||.|.|.. .+ .++.-+..+. +..+.++..+-++.|++.|++.
T Consensus 108 e~l~~Lk~~Gv~risiGv------------qS-------------~~~~~L~~l~--r~~~~~~~~~ai~~~~~~G~~~v 160 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV------------QS-------------FSEEKLKRLG--RIHGPDEAKRAAKLAQGLGLRSF 160 (378)
T ss_pred HHHHHHHHcCCCEEEecc------------Cc-------------CCHHHHHHhC--CCCCHHHHHHHHHHHHHcCCCeE
Confidence 667777777777776654 22 1111122333 3467889999999999999975
Q ss_pred EEEEecccCCC
Q 045962 126 LADIVINHRTA 136 (423)
Q Consensus 126 ilD~V~nh~~~ 136 (423)
-+|+.++..+.
T Consensus 161 ~~dli~Glpgq 171 (378)
T PRK05660 161 NLDLMHGLPDQ 171 (378)
T ss_pred EEEeecCCCCC
Confidence 59999987664
No 167
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=60.42 E-value=26 Score=34.02 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=62.5
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccc--------cCCCCccccccccccccCCCCCCCC--
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFS--------LCCSPRLFFHSIIHQAYSHASLAGY-- 92 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~--------~~~~~~~~~~~~~~~~~~~~~~~GY-- 92 (423)
..+-+||.+ +++. -|.++..+++..|.+.|++.|-++=.-. ++++... +- ..+-+.. +.+
T Consensus 20 aPI~VQSMT-nT~T---~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~v--PL---VaDiHf~-~rla~ 89 (361)
T COG0821 20 APIVVQSMT-NTDT---ADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNV--PL---VADIHFD-YRLAL 89 (361)
T ss_pred CceEEEecc-CCCc---ccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCC--CE---EEEeecc-HHHHH
Confidence 468899997 6665 3799999999999999999999863321 0000000 00 0000011 111
Q ss_pred ----cccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 93 ----MPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 93 ----~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
...|=+.|+|...|..+-++++|++|.++|+-+=+
T Consensus 90 ~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRI 128 (361)
T COG0821 90 EAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRI 128 (361)
T ss_pred HhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEE
Confidence 01455778888999999999999999999987654
No 168
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=60.24 E-value=1.1e+02 Score=29.09 Aligned_cols=123 Identities=19% Similarity=0.340 Sum_probs=73.8
Q ss_pred HHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 045962 42 YNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKK 121 (423)
Q Consensus 42 ~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~ 121 (423)
++-.-.++..|.+-+++.+-+=|-. .+ .+ .+=.+.++++.+. +.
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps~----------~g---------------------~~-~~~~~~eelr~~~----~g 72 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPSY----------CG---------------------PF-NTPWTIEELRTKA----DG 72 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEeccc----------cC---------------------CC-CCcCcHHHHHHHh----cC
Confidence 4445566777888888877665532 11 11 2224678888664 56
Q ss_pred CCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 045962 122 GIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKEL 201 (423)
Q Consensus 122 Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~ 201 (423)
|.++|.=+-+....... ++++..-....++|-. ..++.|. ++ -...+-.|+=++-+
T Consensus 73 g~~pIAYlsIg~ae~yR-------~Ywd~~w~~~~p~wLg----~edP~W~---Gn----------y~VkYW~~eWkdii 128 (300)
T COG2342 73 GVKPIAYLSIGEAESYR-------FYWDKYWLTGRPDWLG----EEDPEWP---GN----------YAVKYWEPEWKDII 128 (300)
T ss_pred CeeEEEEEechhhhhhh-------hHhhhhhhcCCccccc----CCCCCCC---CC----------ceeeccCHHHHHHH
Confidence 78888888887554321 1122211112223321 1111221 11 12567789999999
Q ss_pred HHHHHHHHHhcCCCeEEecccCCC
Q 045962 202 SDWMNWLKTEIGFDGWRFDFVKGY 225 (423)
Q Consensus 202 ~~~l~~w~~~~gvDGfR~D~a~~~ 225 (423)
.+.+..+++ .|+||.-+|.+...
T Consensus 129 ~~~l~rL~d-~GfdGvyLD~VD~y 151 (300)
T COG2342 129 RSYLDRLID-QGFDGVYLDVVDAY 151 (300)
T ss_pred HHHHHHHHH-ccCceEEEeeechH
Confidence 999999997 99999999998876
No 169
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=60.06 E-value=1.2e+02 Score=29.85 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
.+.+++|++++|++|-++++- ++|.+..
T Consensus 76 i~~~~~l~~~vh~~g~~~~~Q--l~H~G~~ 103 (343)
T cd04734 76 IPGFRRLAEAVHAHGAVIMIQ--LTHLGRR 103 (343)
T ss_pred HHHHHHHHHHHHhcCCeEEEe--ccCCCcC
Confidence 578999999999999999884 5777654
No 170
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=59.74 E-value=24 Score=33.69 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEeccc
Q 045962 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 106 Gt~~~l~~lv~~aH~~Gi~VilD~V~nh 133 (423)
.+.++..+.++.+|+.||+|...+++.+
T Consensus 155 ~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 155 HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 4789999999999999999999998876
No 171
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=59.63 E-value=25 Score=28.59 Aligned_cols=61 Identities=25% Similarity=0.386 Sum_probs=37.8
Q ss_pred hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 49 IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 49 L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
...+..+|.+.+.+.+.... . .........|..-+= +.=|...++.+.++.||++|++||.
T Consensus 19 ~~~l~~~g~~~~~~~~~~~~---------~--------~~~~~~~~~d~vi~i-S~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 19 AATLSSTGTPAFFLHPTEAL---------H--------GDLGMVTPGDVVIAI-SNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHhhcCCCceEEcccchhh---------c--------cccCcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 34567789999887554311 0 000011222222222 5557889999999999999999875
No 172
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=59.62 E-value=48 Score=31.95 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
+.+++.+.++.++++|++|..|+.++
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~G 186 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILG 186 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEEC
Confidence 67899999999999999999999886
No 173
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=58.99 E-value=1.9e+02 Score=28.66 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
.+.++++++++|++|-++++-+ +|.+..
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL--~H~Gr~ 109 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQL--WHAGRK 109 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEe--ccCccc
Confidence 5789999999999999999875 788854
No 174
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=58.79 E-value=67 Score=30.25 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
+++.+.++.+.+ .|+|.+++ |++....++-..++++.+
T Consensus 143 ~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 143 DFLIEVVEAAIE-AGATTINIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred HHHHHHHHHHHH-cCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 467777777776 99999999 999998887777765544
No 175
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=58.74 E-value=34 Score=32.44 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
+.+++.+-|..|+++||+|+.=+.++
T Consensus 166 d~~~y~dav~r~rkrgIkvc~HiI~G 191 (312)
T COG1242 166 DFACYVDAVKRLRKRGIKVCTHLING 191 (312)
T ss_pred chHHHHHHHHHHHHcCCeEEEEEeeC
Confidence 56889999999999999999776664
No 176
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=58.73 E-value=65 Score=31.63 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHh
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKN 236 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~ 236 (423)
+++.+.++...+ +|+|.+++ |++..+.++-..++++.
T Consensus 144 e~l~~~a~~~~~-~Ga~~i~i~DT~G~~~P~~v~~~v~~ 181 (337)
T PRK08195 144 EKLAEQAKLMES-YGAQCVYVVDSAGALLPEDVRDRVRA 181 (337)
T ss_pred HHHHHHHHHHHh-CCCCEEEeCCCCCCCCHHHHHHHHHH
Confidence 567777777765 99999998 99999988777666443
No 177
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=58.55 E-value=22 Score=36.42 Aligned_cols=33 Identities=6% Similarity=0.139 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEEecccCCC
Q 045962 104 SYGSQNELKSLIQAFNKKGIK-CLADIVINHRTA 136 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~-VilD~V~nh~~~ 136 (423)
+-.+.++..+.++.+++.|+. |-+|+.++..+.
T Consensus 183 R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgq 216 (453)
T PRK13347 183 RIQPEEMVARAVELLRAAGFESINFDLIYGLPHQ 216 (453)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCC
Confidence 346789999999999999997 889999986654
No 178
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=58.54 E-value=24 Score=28.70 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=17.7
Q ss_pred HHHHHhhhhHHHHcCCcEEEcCC
Q 045962 42 YNFLKKRIPDIASAGITHVWLSS 64 (423)
Q Consensus 42 ~~~~~~~L~ylk~lGi~~I~l~P 64 (423)
-+.+.+.++.++++|+..||+.|
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-T
T ss_pred HHHHHHHHHHHHHcCCCEEEEEc
Confidence 45678889999999999999765
No 179
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=58.37 E-value=21 Score=33.79 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=37.6
Q ss_pred HHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 045962 44 FLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGI 123 (423)
Q Consensus 44 ~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi 123 (423)
.+.+.|+.++++|+++|.|.+-. .. ..++ +.--+.++.+++.+.+.++||
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~----------~~-------------------~~~~-~~~~~~~~~~~~~~~l~~~gl 66 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDE----------TD-------------------DRLS-RLDWSREQRLALVNAIIETGV 66 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCC----------cc-------------------chhh-ccCCCHHHHHHHHHHHHHcCC
Confidence 57888999999999999995422 11 0111 111135789999999999999
Q ss_pred EEE
Q 045962 124 KCL 126 (423)
Q Consensus 124 ~Vi 126 (423)
+|.
T Consensus 67 ~i~ 69 (279)
T TIGR00542 67 RIP 69 (279)
T ss_pred Cce
Confidence 986
No 180
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=58.33 E-value=1.6e+02 Score=27.55 Aligned_cols=53 Identities=8% Similarity=0.039 Sum_probs=36.2
Q ss_pred HHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHc-C
Q 045962 44 FLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKK-G 122 (423)
Q Consensus 44 ~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~-G 122 (423)
.+.+.++.++++|++.|+|..-. .. ++. . +.. +.++++++.+.+.++ |
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~----------~~------------~~~-------~-~~~-~~~~~~~l~~~~~~~~~ 59 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGN----------PR------------SWL-------S-RPL-KKERAEKFKAIAEEGPS 59 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCC----------CC------------ccC-------C-CCC-CHHHHHHHHHHHHHcCC
Confidence 56788999999999999986422 10 111 1 222 457888888888888 7
Q ss_pred CEEEE
Q 045962 123 IKCLA 127 (423)
Q Consensus 123 i~Vil 127 (423)
+.+.+
T Consensus 60 ~~i~~ 64 (279)
T cd00019 60 ICLSV 64 (279)
T ss_pred CcEEE
Confidence 77664
No 181
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=58.32 E-value=21 Score=37.73 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=45.1
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+=+-..+.|..+|++|+|+|+.-=++. . ++ +.... -.|.+.-||-++|++||+
T Consensus 47 ~pe~W~~~i~k~k~~Gln~IqtYVfWn----------~-He-----p~~g~-----------y~FsG~~DlvkFikl~~~ 99 (649)
T KOG0496|consen 47 TPEMWPDLIKKAKAGGLNVIQTYVFWN----------L-HE-----PSPGK-----------YDFSGRYDLVKFIKLIHK 99 (649)
T ss_pred ChhhhHHHHHHHHhcCCceeeeeeecc----------c-cc-----CCCCc-----------ccccchhHHHHHHHHHHH
Confidence 445567778889999999998543331 1 00 11111 224456779999999999
Q ss_pred cCCEEEEEEecccCC
Q 045962 121 KGIKCLADIVINHRT 135 (423)
Q Consensus 121 ~Gi~VilD~V~nh~~ 135 (423)
.|+.|+|=+=+--++
T Consensus 100 ~GLyv~LRiGPyIca 114 (649)
T KOG0496|consen 100 AGLYVILRIGPYICA 114 (649)
T ss_pred CCeEEEecCCCeEEe
Confidence 999999976554443
No 182
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=58.27 E-value=18 Score=36.15 Aligned_cols=70 Identities=16% Similarity=0.296 Sum_probs=48.6
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
.++++++...|..||++||+.|-+ +|+ -++++.. .. .+| .+...++|.+-+
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmv-dvW----------WGiVE~~----~p-------------~~y-dWs~Y~~l~~~v 62 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMV-DVW----------WGIVEGE----GP-------------QQY-DWSGYRELFEMV 62 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEE-EEE----------HHHHTGS----ST-------------TB----HHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEE-EeE----------eeeeccC----CC-------------Ccc-CcHHHHHHHHHH
Confidence 367899999999999999999964 333 3322210 10 111 267799999999
Q ss_pred HHcCCEEEEEEecccCCCC
Q 045962 119 NKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~~~ 137 (423)
++.|+||.+=+-+..++.+
T Consensus 63 r~~GLk~~~vmsfH~cGgN 81 (402)
T PF01373_consen 63 RDAGLKLQVVMSFHQCGGN 81 (402)
T ss_dssp HHTT-EEEEEEE-S-BSSS
T ss_pred HHcCCeEEEEEeeecCCCC
Confidence 9999999999999988765
No 183
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=58.20 E-value=35 Score=32.61 Aligned_cols=140 Identities=16% Similarity=0.208 Sum_probs=75.3
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCC---HHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS---QNELKSLIQA 117 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt---~~~l~~lv~~ 117 (423)
+-+.+.++..-+|+-|+|++-+ .++++ .+...|.-.| .+. ...++ .-|..-+|++
T Consensus 75 ~kk~~de~fk~ikdn~~Na~Vi----D~Kdd---------------~G~lty~s~d--~~~-~~~~sv~~f~Di~~~iKk 132 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVI----DVKDD---------------YGELTYPSSD--EIN-KYTKSVNKFKDIEPVIKK 132 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEE----EecCC---------------CccEeccccc--hhh-hhhhccccccccHHHHHH
Confidence 3455667778899999999843 22111 1111233222 111 11121 3557789999
Q ss_pred HHHcCCEEEEEEecccCCCCCCCCcccceeccCCCC---CCCCCCCCCccccCCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q 045962 118 FNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTP---DKRLDWGPSFICRDDTTYSDGRGH-PDSGEPFGPAPDIDHL 193 (423)
Q Consensus 118 aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dln~~ 193 (423)
|+++||.+|.-+|.=--.. ++.+++-.. ..-..|.. +.+|... +..+.-| .+--
T Consensus 133 aKe~giY~IARiVvFKD~~--------l~~~n~fk~av~~~gKpw~~---------~~ngaLrKe~~~ehW-----Vd~y 190 (400)
T COG1306 133 AKENGIYAIARIVVFKDTI--------LAKENPFKIAVYKDGKPWKA---------FTNGALRKESDGEHW-----VDAY 190 (400)
T ss_pred HHhcCeEEEEEEEEeeeee--------EEeecCceEEEEcCCCcchh---------hhcccccccccceee-----eccc
Confidence 9999999999988732111 111111000 00011211 1111100 0001111 4455
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 045962 194 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 225 (423)
Q Consensus 194 ~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~ 225 (423)
++.++++=+...+.-++ +|+|-+.+|-....
T Consensus 191 ~~~~WeYNvtIAKEa~~-fGfdEiQFDYIRFP 221 (400)
T COG1306 191 DKNLWEYNVTIAKEAAK-FGFDEIQFDYIRFP 221 (400)
T ss_pred chhhhhhhHHHHHHHHH-cCccceeeeEEEcc
Confidence 78999999999999997 99999999866543
No 184
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=58.16 E-value=59 Score=31.12 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
+++.+.++.+.+ .|+|.+++ |++....+.-..++++.+
T Consensus 155 ~~~~~~~~~~~~-~G~d~i~l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 155 EAVADVAERLFA-LGCYEISLGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred HHHHHHHHHHHH-cCCcEEEeccccCccCHHHHHHHHHHH
Confidence 567888888886 99999999 999988887666665543
No 185
>PLN02803 beta-amylase
Probab=57.85 E-value=37 Score=35.13 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=49.3
Q ss_pred HHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 045962 43 NFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKG 122 (423)
Q Consensus 43 ~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~G 122 (423)
+++.+.|..||.+||+.|-+ +++ -++++.. +. .+| .+...++|++-+++.|
T Consensus 107 ~~l~~~L~~LK~~GVdGVmv-DVW----------WGiVE~~----~p-------------~~Y-dWsgY~~l~~mvr~~G 157 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMV-DAW----------WGLVEKD----GP-------------MKY-NWEGYAELVQMVQKHG 157 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEE-Eee----------eeeeccC----CC-------------CcC-CcHHHHHHHHHHHHcC
Confidence 78999999999999999954 444 3322210 01 111 3677999999999999
Q ss_pred CEEEEEEecccCCCC
Q 045962 123 IKCLADIVINHRTAE 137 (423)
Q Consensus 123 i~VilD~V~nh~~~~ 137 (423)
+||..=+-+..++.+
T Consensus 158 LKlq~vmSFHqCGGN 172 (548)
T PLN02803 158 LKLQVVMSFHQCGGN 172 (548)
T ss_pred CeEEEEEEecccCCC
Confidence 999999999988875
No 186
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=57.66 E-value=1.5e+02 Score=26.97 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHH
Q 045962 199 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMK 235 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~ 235 (423)
-.+.+.+..+++ .||+.||+|.-..- .+...++++
T Consensus 156 l~l~~~l~~L~~-~Gv~~~rI~~r~~~-~~~~~~iv~ 190 (233)
T PF01136_consen 156 LCLLDELPELKD-AGVDSFRIDGRTES-PEYIEEIVK 190 (233)
T ss_pred hhHHHHHHHHHH-cCCCEEEEcCccCC-HHHHHHHHH
Confidence 357778888887 99999999986555 555555443
No 187
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=57.60 E-value=21 Score=36.57 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHcCCE-EEEEEecccCCC
Q 045962 105 YGSQNELKSLIQAFNKKGIK-CLADIVINHRTA 136 (423)
Q Consensus 105 ~Gt~~~l~~lv~~aH~~Gi~-VilD~V~nh~~~ 136 (423)
-.+.++..+.++.+++.|++ |-+|+.++..+.
T Consensus 183 ~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 183 IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 36788999999999999997 779999887654
No 188
>PRK01060 endonuclease IV; Provisional
Probab=57.39 E-value=19 Score=34.04 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=37.8
Q ss_pred HHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 045962 42 YNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKK 121 (423)
Q Consensus 42 ~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~ 121 (423)
+.++.+.++.++++|+++|+|.+-- +. .+. . +. -+.++++++.+.+.+.
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~----------p~------------~~~-------~-~~-~~~~~~~~lk~~~~~~ 59 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGN----------PQ------------QWK-------R-KP-LEELNIEAFKAACEKY 59 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCC----------CC------------CCc-------C-CC-CCHHHHHHHHHHHHHc
Confidence 3447788999999999999985432 11 111 1 22 2567899999999999
Q ss_pred CCEE
Q 045962 122 GIKC 125 (423)
Q Consensus 122 Gi~V 125 (423)
|+++
T Consensus 60 gl~~ 63 (281)
T PRK01060 60 GISP 63 (281)
T ss_pred CCCC
Confidence 9985
No 189
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=56.86 E-value=41 Score=32.99 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=60.0
Q ss_pred CceeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCcccc-c-c-ccccccCCCCCCCCcc-----
Q 045962 23 PTILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFF-H-S-IIHQAYSHASLAGYMP----- 94 (423)
Q Consensus 23 ~~v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~-~-~-~~~~~~~~~~~~GY~~----- 94 (423)
+.+.+||.+ +.+. -|.+...+++..|.+.|++.|-+.=+-.-..+....- + + +.--.+-+..+ ..+.
T Consensus 26 ~Pi~VQSMt-~t~T---~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHFd~-~lAl~a~~~ 100 (360)
T PRK00366 26 APIVVQSMT-NTDT---ADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHFDY-RLALAAAEA 100 (360)
T ss_pred CcEEEEecC-CCCc---hhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCCCH-HHHHHHHHh
Confidence 478899998 6554 4789999999999999999999863321000000000 0 0 00000000011 0110
Q ss_pred -cccCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEE
Q 045962 95 -GRLYDLHASSYGS-QNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 95 -~d~~~id~~~~Gt-~~~l~~lv~~aH~~Gi~Vil 127 (423)
.|=-.|+|.++|+ .+.++++|++|+++|+-+=+
T Consensus 101 G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRI 135 (360)
T PRK00366 101 GADALRINPGNIGKRDERVREVVEAAKDYGIPIRI 135 (360)
T ss_pred CCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEE
Confidence 2223566889999 89999999999999976643
No 190
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=56.21 E-value=21 Score=35.60 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEEecccCCCC
Q 045962 104 SYGSQNELKSLIQAFNKKGIK-CLADIVINHRTAE 137 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~-VilD~V~nh~~~~ 137 (423)
+-.+.++..+.++.+++.|+. |-+|+.++..+..
T Consensus 131 r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt 165 (377)
T PRK08599 131 RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQT 165 (377)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCC
Confidence 345789999999999999998 6799999876643
No 191
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=56.16 E-value=1e+02 Score=29.66 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 045962 195 PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 225 (423)
Q Consensus 195 p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~ 225 (423)
..-++.+.+.+..+++.||+||+-||-=...
T Consensus 86 ~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~ 116 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYGLTHLDFDIEGGA 116 (294)
T ss_pred cccHHHHHHHHHHHHHHhCCCeEEEeccCCc
Confidence 3455667777777788899999999865543
No 192
>PRK06256 biotin synthase; Validated
Probab=55.17 E-value=20 Score=34.94 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=28.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccc
Q 045962 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 98 ~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh 133 (423)
-.+. +. .+.++..+.++.||+.||+|...+++.+
T Consensus 178 ~~i~-~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 178 PNVV-TT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred hhcC-CC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 3444 43 3789999999999999999999999986
No 193
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=54.88 E-value=1.5e+02 Score=29.17 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
-.+.+++|++++|++|-++++-+ +|.+..
T Consensus 75 ~i~~~~~l~~~vh~~g~~~~~QL--~h~G~~ 103 (353)
T cd02930 75 QAAGHRLITDAVHAEGGKIALQI--LHAGRY 103 (353)
T ss_pred HHHHHHHHHHHHHHcCCEEEeec--cCCCCC
Confidence 37889999999999999999876 477754
No 194
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=54.06 E-value=80 Score=29.95 Aligned_cols=73 Identities=10% Similarity=0.167 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 045962 109 NELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAP 188 (423)
Q Consensus 109 ~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (423)
+...+.|+.|+++|++|.+-+.......+.
T Consensus 114 ~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~-------------------------------------------------- 143 (274)
T cd07938 114 ERFEPVAELAKAAGLRVRGYVSTAFGCPYE-------------------------------------------------- 143 (274)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeEecCCCC--------------------------------------------------
Confidence 567788999999999988877765433111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 189 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 189 dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
.+.-.+++.+.++...+ .|+|.+++ |++....+....++++.+
T Consensus 144 -----~~~~~~~~~~~~~~~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l 187 (274)
T cd07938 144 -----GEVPPERVAEVAERLLD-LGCDEISLGDTIGVATPAQVRRLLEAV 187 (274)
T ss_pred -----CCCCHHHHHHHHHHHHH-cCCCEEEECCCCCccCHHHHHHHHHHH
Confidence 00013467777888776 99999999 999888887777765544
No 195
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=53.99 E-value=1.8e+02 Score=27.25 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=36.9
Q ss_pred HHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 045962 44 FLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGI 123 (423)
Q Consensus 44 ~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi 123 (423)
.+.+.++-++++|+++|.|.+-- .. .+ +. +.--+.++++++.+.+.++||
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~----------~~------------~~-------~~-~~~~~~~~~~~l~~~l~~~gl 71 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDE----------SD------------ER-------LA-RLDWSREQRLALVNALVETGF 71 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCc----------cc------------cc-------hh-ccCCCHHHHHHHHHHHHHcCC
Confidence 46678888999999999985322 00 00 11 111245779999999999999
Q ss_pred EEEE
Q 045962 124 KCLA 127 (423)
Q Consensus 124 ~Vil 127 (423)
+|..
T Consensus 72 ~i~~ 75 (283)
T PRK13209 72 RVNS 75 (283)
T ss_pred ceeE
Confidence 9864
No 196
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=53.92 E-value=82 Score=30.85 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHh
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKN 236 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~ 236 (423)
+++.+.++...+ +|+|.+++ |++..+.++-..+.++.
T Consensus 143 e~l~~~a~~~~~-~Ga~~i~i~DT~G~~~P~~v~~~v~~ 180 (333)
T TIGR03217 143 EKLAEQAKLMES-YGADCVYIVDSAGAMLPDDVRDRVRA 180 (333)
T ss_pred HHHHHHHHHHHh-cCCCEEEEccCCCCCCHHHHHHHHHH
Confidence 567777877765 99999999 99999988766666443
No 197
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=53.89 E-value=12 Score=37.81 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=32.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEe--cccCCC
Q 045962 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIV--INHRTA 136 (423)
Q Consensus 97 ~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V--~nh~~~ 136 (423)
+..+- ...|+..+++++++.||++|..|++|-+ .-|.-.
T Consensus 168 is~vS-n~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~i 208 (405)
T COG0520 168 LSHVS-NVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPI 208 (405)
T ss_pred EECcc-ccccccchHHHHHHHHHHcCCEEEEECccccCccCC
Confidence 44555 8899999999999999999999999987 444443
No 198
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=53.76 E-value=34 Score=33.73 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEEecccCCC
Q 045962 104 SYGSQNELKSLIQAFNKKGIK-CLADIVINHRTA 136 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~-VilD~V~nh~~~ 136 (423)
+-.+.++..+.++.+++.|+. |-+|+.++-.+.
T Consensus 129 R~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgq 162 (350)
T PRK08446 129 RIHSQKQIIKAIENAKKAGFENISIDLIYDTPLD 162 (350)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC
Confidence 344688999999999999997 669999986653
No 199
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=53.57 E-value=33 Score=34.04 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
.+.+++|.+.|+++|+-+|+|-|....+
T Consensus 195 ~~~l~~l~~l~~~~g~~lI~DEv~~g~g 222 (389)
T PRK01278 195 DEFLKGLRQLCDENGLLLIFDEVQCGMG 222 (389)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 5889999999999999999999987554
No 200
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=53.46 E-value=14 Score=36.59 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCEEEEEEe
Q 045962 110 ELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 110 ~l~~lv~~aH~~Gi~VilD~V 130 (423)
...++|++||++|++|+.--|
T Consensus 279 ~~~~~v~~Ah~~GL~V~~WTv 299 (356)
T cd08560 279 VPSEYAKAAKAAGLDIITWTL 299 (356)
T ss_pred CCHHHHHHHHHcCCEEEEEEe
Confidence 356899999999999998776
No 201
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=53.43 E-value=31 Score=35.29 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHcCC-EEEEEEecccCCCC
Q 045962 105 YGSQNELKSLIQAFNKKGI-KCLADIVINHRTAE 137 (423)
Q Consensus 105 ~Gt~~~l~~lv~~aH~~Gi-~VilD~V~nh~~~~ 137 (423)
-.+.++..+.++.+++.|+ .|-+|+.++..+..
T Consensus 183 ~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 183 IQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 4578899999999999999 89999999876643
No 202
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=53.40 E-value=94 Score=29.08 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
+++.+.++...+ .|+|.+++ |++....++-..++++.+
T Consensus 139 ~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 139 DFLIEFAEVAQE-AGADRLRFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred HHHHHHHHHHHH-CCCCEEEeCCCCCCCCHHHHHHHHHHH
Confidence 467777777776 99999999 999988887777765544
No 203
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=53.38 E-value=1.1e+02 Score=29.05 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcC
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNTM 238 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~ 238 (423)
+++.+.++...+ .|+|.+++ |++....++...++++.++
T Consensus 149 ~~~~~~~~~~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l~ 188 (275)
T cd07937 149 EYYVKLAKELED-MGADSICIKDMAGLLTPYAAYELVKALK 188 (275)
T ss_pred HHHHHHHHHHHH-cCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 457777777776 99999999 9999999888887766554
No 204
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=53.28 E-value=1.1e+02 Score=30.12 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=42.7
Q ss_pred HHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 045962 43 NFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKG 122 (423)
Q Consensus 43 ~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~G 122 (423)
+..++.....++=|+..|..-... .+ ....++ +.. ..+..+. -.+.+++|++++|++|
T Consensus 37 ~~~~~~y~~rA~gG~GlIi~~~~~----------v~--------~~~~~~-~~~-~~~~~d~--~i~~~r~l~d~vh~~G 94 (337)
T PRK13523 37 NFHLIHYGTRAAGQVGLVIVEATA----------VL--------PEGRIS-DKD-LGIWDDE--HIEGLHKLVTFIHDHG 94 (337)
T ss_pred HHHHHHHHHHHcCCCeEEEECCeE----------EC--------ccccCC-CCc-eecCCHH--HHHHHHHHHHHHHhcC
Confidence 455666666677789888776555 22 111111 000 0111011 2688999999999999
Q ss_pred CEEEEEEecccCCCC
Q 045962 123 IKCLADIVINHRTAE 137 (423)
Q Consensus 123 i~VilD~V~nh~~~~ 137 (423)
-++++-+ +|.+..
T Consensus 95 ~~i~~QL--~H~G~~ 107 (337)
T PRK13523 95 AKAAIQL--AHAGRK 107 (337)
T ss_pred CEEEEEc--cCCCCC
Confidence 9998876 677653
No 205
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=53.02 E-value=11 Score=19.75 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=7.9
Q ss_pred cchhhHHHHHHhhCCC
Q 045962 2 SPLCFLCFLLLSVFPP 17 (423)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (423)
+-+.+++.++++++++
T Consensus 3 k~vIIlvvLLliSf~a 18 (19)
T PF13956_consen 3 KLVIILVVLLLISFPA 18 (19)
T ss_pred eehHHHHHHHhccccC
Confidence 3334445455555554
No 206
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=52.68 E-value=46 Score=29.15 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=22.9
Q ss_pred HHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 42 YNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 42 ~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
.+..++...+.+++|+++|-+.|++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccH
Confidence 7889999999999999999998766
No 207
>PF09196 DUF1953: Domain of unknown function (DUF1953); InterPro: IPR015279 This domain is found in the Archaeal protein maltooligosyl trehalose synthase produced by Sulfolobus spp. Its function has not, as yet, been defined. ; PDB: 3HJE_A 1IV8_A.
Probab=52.63 E-value=16 Score=25.32 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=29.0
Q ss_pred eEEEeecCCEEEEEECCEEEEEECCC----CCcCccCCcCeEEeeccCC
Q 045962 377 VNILASQSDLYVAAIDDKIITKIGPK----MDLRNLIPRNFKVATSGKD 421 (423)
Q Consensus 377 ~~~~~~~~~~~~~~r~~~~lv~in~~----~~~~~~~~~~~~~~~~g~~ 421 (423)
+..+....++-.|.|.++++|++-.. .+....+-+.|++++.|++
T Consensus 2 yk~l~l~~glcgf~r~~kilviiktkgs~n~~~~~e~~~~ytdv~t~e~ 50 (66)
T PF09196_consen 2 YKGLDLEEGLCGFIRFNKILVIIKTKGSVNYKYKIEEGAIYTDVITGEE 50 (66)
T ss_dssp EEEE---TTEEEEEETTTEEEEEES-TTSSCEEEEECCEEEEETTTTEE
T ss_pred CcccchhhcceeEEecCEEEEEEecccccceeeeeccCcEEEeeecChh
Confidence 44566677899999999999998752 2233334457888887763
No 208
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=52.38 E-value=27 Score=35.13 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEEecccCCC
Q 045962 104 SYGSQNELKSLIQAFNKKGIK-CLADIVINHRTA 136 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~-VilD~V~nh~~~ 136 (423)
+--+.++..+.++.+++.|+. |-+|+.++.-+.
T Consensus 146 R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgq 179 (400)
T PRK07379 146 RSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQ 179 (400)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 334788999999999999999 889999987664
No 209
>PLN02801 beta-amylase
Probab=51.67 E-value=52 Score=33.88 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=50.6
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
-+-+++.+.|..||.+||+.|-+ +++ -++++.. +. .+| .+...++|++-++
T Consensus 34 ~~~~~l~~~L~~LK~~GVdGVmv-DVW----------WGiVE~~----~P-------------~~Y-dWsgY~~l~~mvr 84 (517)
T PLN02801 34 EDEEGLEKQLKRLKEAGVDGVMV-DVW----------WGIVESK----GP-------------KQY-DWSAYRSLFELVQ 84 (517)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-eee----------eeeeccC----CC-------------Ccc-CcHHHHHHHHHHH
Confidence 34678999999999999999964 333 2322210 00 111 3677999999999
Q ss_pred HcCCEEEEEEecccCCCC
Q 045962 120 KKGIKCLADIVINHRTAE 137 (423)
Q Consensus 120 ~~Gi~VilD~V~nh~~~~ 137 (423)
+.|+||.+=+-+..++.+
T Consensus 85 ~~GLKlq~vmSFHqCGGN 102 (517)
T PLN02801 85 SFGLKIQAIMSFHQCGGN 102 (517)
T ss_pred HcCCeEEEEEEecccCCC
Confidence 999999999999988875
No 210
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=51.27 E-value=2.4e+02 Score=27.44 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
.+.+++|++++|++|-++++-+ +|.+..
T Consensus 76 ~~~~~~l~~~vh~~G~~~~~QL--~H~G~~ 103 (336)
T cd02932 76 IEALKRIVDFIHSQGAKIGIQL--AHAGRK 103 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEc--cCCCcC
Confidence 6789999999999999998876 577654
No 211
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=51.03 E-value=12 Score=35.66 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 104 SYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
..|...+++++++.||++|+.|++|-+.
T Consensus 165 ~~G~~~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 165 YYGICYNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred CCCEecCHHHHHHHHHhcCCeEEEECcc
Confidence 3688888999999999999999999873
No 212
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=50.77 E-value=61 Score=30.92 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCLAD 128 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD 128 (423)
.-.++.+-|++|+++|+||+|=
T Consensus 57 ~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 57 NCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred cchhHHHHHHHHHHCCCEEEEE
Confidence 3468999999999999999984
No 213
>PLN02389 biotin synthase
Probab=49.14 E-value=53 Score=32.86 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccc
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh 133 (423)
+.++-.+.++.||+.||+|..=+++.|
T Consensus 211 s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 211 SYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred CHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 789999999999999999999999998
No 214
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=49.09 E-value=26 Score=33.95 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEeccc
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh 133 (423)
...|..++++++++.||++|+.|++|-+...
T Consensus 159 ~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 159 TDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 5578888899999999999999999998653
No 215
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=48.62 E-value=1.5e+02 Score=29.42 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEK 138 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~ 138 (423)
.+.++++++++|++|-++++- ++|.+...
T Consensus 78 i~~~~~lad~vH~~Ga~i~~Q--L~H~Gr~~ 106 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQ--LWHTGRIS 106 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEe--ccCCCCCC
Confidence 678999999999999999985 46887653
No 216
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=48.59 E-value=87 Score=30.26 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=44.8
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+.+.+.+.+..+.++||++|-|-|+-++ +. ..+...|++- .-+++-|+++++
T Consensus 59 sid~l~~~~~~~~~~Gi~~v~lFgv~~~--------Kd-------~~gs~A~~~~-------------g~v~~air~iK~ 110 (322)
T PRK13384 59 PESALADEIERLYALGIRYVMPFGISHH--------KD-------AKGSDTWDDN-------------GLLARMVRTIKA 110 (322)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCC--------CC-------CCcccccCCC-------------ChHHHHHHHHHH
Confidence 3778999999999999999999998632 11 1222223221 124444555555
Q ss_pred c--CCEEEEEEecccCC
Q 045962 121 K--GIKCLADIVINHRT 135 (423)
Q Consensus 121 ~--Gi~VilD~V~nh~~ 135 (423)
. .|-||.|+.+....
T Consensus 111 ~~pdl~vi~DVcLc~YT 127 (322)
T PRK13384 111 AVPEMMVIPDICFCEYT 127 (322)
T ss_pred HCCCeEEEeeeecccCC
Confidence 4 89999999997554
No 217
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=48.38 E-value=37 Score=33.76 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCCE-EEEEEecccCCC
Q 045962 107 SQNELKSLIQAFNKKGIK-CLADIVINHRTA 136 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~-VilD~V~nh~~~ 136 (423)
+.++..+-++.|++.|+. |-+|+.++.-+.
T Consensus 137 ~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgq 167 (370)
T PRK06294 137 SSSKAIDAVQECSEHGFSNLSIDLIYGLPTQ 167 (370)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 678899999999999996 899999987664
No 218
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=48.23 E-value=32 Score=34.47 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
..+.+.-|+.++++-||++|+-||+|=.+.
T Consensus 173 NPll~v~DI~~l~~la~~~g~~vvVDnTf~ 202 (409)
T KOG0053|consen 173 NPLLKVPDIEKLARLAHKYGFLVVVDNTFG 202 (409)
T ss_pred CCccccccHHHHHHHHhhCCCEEEEeCCcC
Confidence 455566679999999999999999995553
No 219
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=48.13 E-value=95 Score=28.41 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHh
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKN 236 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~ 236 (423)
+++.+.++...+ .|+|.+++ |++..+.++...++++.
T Consensus 137 ~~~~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~v~~lv~~ 174 (237)
T PF00682_consen 137 EELLELAEALAE-AGADIIYLADTVGIMTPEDVAELVRA 174 (237)
T ss_dssp HHHHHHHHHHHH-HT-SEEEEEETTS-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCeEEEeeCccCCcCHHHHHHHHHH
Confidence 467777787776 89999999 89999988777776443
No 220
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=47.54 E-value=43 Score=33.61 Aligned_cols=35 Identities=11% Similarity=-0.029 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
.+.-+.++..+.++.|++.+..|-+|++++.-+..
T Consensus 141 gR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 141 GRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred CCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCC
Confidence 34456888888999999999999999999977653
No 221
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=47.49 E-value=52 Score=29.60 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=29.2
Q ss_pred HHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 045962 45 LKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIK 124 (423)
Q Consensus 45 ~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~ 124 (423)
+...+..||+||++.|=..|+- -+-..|||+++.++|-++|+.
T Consensus 137 vetAiaml~dmG~~SiKffPm~-------------------------------------Gl~~leE~~avAkA~a~~g~~ 179 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMG-------------------------------------GLKHLEELKAVAKACARNGFT 179 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---T-------------------------------------TTTTHHHHHHHHHHHHHCT-E
T ss_pred HHHHHHHHHHcCCCeeeEeecC-------------------------------------CcccHHHHHHHHHHHHHcCce
Confidence 4555789999999999766654 112368899999999999887
Q ss_pred E
Q 045962 125 C 125 (423)
Q Consensus 125 V 125 (423)
+
T Consensus 180 l 180 (218)
T PF07071_consen 180 L 180 (218)
T ss_dssp E
T ss_pred e
Confidence 6
No 222
>TIGR03586 PseI pseudaminic acid synthase.
Probab=47.45 E-value=59 Score=31.77 Aligned_cols=128 Identities=12% Similarity=0.105 Sum_probs=73.3
Q ss_pred CCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCC-CCCCCCCCHHHHHHHH
Q 045962 37 KKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYD-LHASSYGSQNELKSLI 115 (423)
Q Consensus 37 ~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~-id~~~~Gt~~~l~~lv 115 (423)
.|.|+++-+.+.++..++.|.++|=+-=.. .+.... ++. ...+. .....|.....+. .. ..-=+.+++++|.
T Consensus 11 NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~---~~~l~~-~~~-~~~~~-~~~~~~~~~~~~~~~~-~~el~~e~~~~L~ 83 (327)
T TIGR03586 11 NHNGSLERALAMIEAAKAAGADAIKLQTYT---PDTITL-DSD-RPEFI-IKGGLWDGRTLYDLYQ-EAHTPWEWHKELF 83 (327)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEeeecc---HHHhhc-ccc-ccccc-cccCCcCCccHHHHHH-HhhCCHHHHHHHH
Confidence 367999999999999999999987543211 000000 000 00000 0000111111111 11 1111468899999
Q ss_pred HHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 045962 116 QAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNP 195 (423)
Q Consensus 116 ~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p 195 (423)
+.|++.||.++-.. |+
T Consensus 84 ~~~~~~Gi~~~stp-----------------------------fd----------------------------------- 99 (327)
T TIGR03586 84 ERAKELGLTIFSSP-----------------------------FD----------------------------------- 99 (327)
T ss_pred HHHHHhCCcEEEcc-----------------------------CC-----------------------------------
Confidence 99999999987532 00
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeE
Q 045962 196 RVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFT 242 (423)
Q Consensus 196 ~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~ 242 (423)
.+.+.+ ++++||+.+-+=+..-...++++.+.+..+|+++
T Consensus 100 ------~~svd~-l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvil 139 (327)
T TIGR03586 100 ------ETAVDF-LESLDVPAYKIASFEITDLPLIRYVAKTGKPIIM 139 (327)
T ss_pred ------HHHHHH-HHHcCCCEEEECCccccCHHHHHHHHhcCCcEEE
Confidence 011233 3458999999877777777888888777777653
No 223
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=47.43 E-value=31 Score=37.06 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=42.4
Q ss_pred HHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 045962 43 NFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKG 122 (423)
Q Consensus 43 ~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~G 122 (423)
..+.+.|.-.|++|+|+|-+..+. -+.+++ ..| ..||...| .. +++.|++.|
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~fa----------W~~~eP------~eG--~fdf~~~D---------~~-~l~~a~~~G 81 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFA----------WNLHEP------EEG--KFDFTWLD---------EI-FLERAYKAG 81 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEE----------eeccCc------ccc--ccCcccch---------HH-HHHHHHhcC
Confidence 578889999999999999998877 442211 111 11222333 44 899999999
Q ss_pred CEEEEEEec
Q 045962 123 IKCLADIVI 131 (423)
Q Consensus 123 i~VilD~V~ 131 (423)
+.||+==.+
T Consensus 82 l~vil~t~P 90 (673)
T COG1874 82 LYVILRTGP 90 (673)
T ss_pred ceEEEecCC
Confidence 999986654
No 224
>PLN02905 beta-amylase
Probab=47.31 E-value=66 Score=34.02 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=51.1
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
-+.+++.+.|..||.+||+.|-+ +++ -++++.. +. .+| .+...++|++-++
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmv-DVW----------WGiVE~~----gP-------------~~Y-dWsgY~~L~~mvr 333 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKV-DCW----------WGIVEAH----AP-------------QEY-NWNGYKRLFQMVR 333 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEE-eee----------eeeeecC----CC-------------CcC-CcHHHHHHHHHHH
Confidence 45778999999999999999954 444 3322210 00 111 3677999999999
Q ss_pred HcCCEEEEEEecccCCCC
Q 045962 120 KKGIKCLADIVINHRTAE 137 (423)
Q Consensus 120 ~~Gi~VilD~V~nh~~~~ 137 (423)
+.|+||.+=+-+..++.+
T Consensus 334 ~~GLKlqvVMSFHqCGGN 351 (702)
T PLN02905 334 ELKLKLQVVMSFHECGGN 351 (702)
T ss_pred HcCCeEEEEEEecccCCC
Confidence 999999999999988875
No 225
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=47.19 E-value=1.1e+02 Score=28.56 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
+++.+.++...+ .|+|.+++ |++..+.++...++++.+
T Consensus 141 ~~~~~~~~~~~~-~G~d~i~l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 141 EELAEQAKLMES-YGADCVYVTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred HHHHHHHHHHHH-cCCCEEEEcCCCCCcCHHHHHHHHHHH
Confidence 567777777775 99999999 999999888877776554
No 226
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.72 E-value=68 Score=31.59 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=37.1
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+-+.+.+-.+.|+++++ .|.|.|.. +. +..+| ..+ +.++++++.+.+++
T Consensus 269 s~e~a~~La~~l~~l~~-~VnLIPyn----------p~---------~~~~~-----~~p------s~e~i~~f~~~L~~ 317 (345)
T PRK14457 269 LPEHAEELANLLRGFQS-HVNLIPYN----------PI---------DEVEF-----QRP------SPKRIQAFQRVLEQ 317 (345)
T ss_pred CHHHHHHHHHHHhcCCC-eEEEecCC----------CC---------CCCCC-----CCC------CHHHHHHHHHHHHH
Confidence 44555666667777765 68888877 32 11122 222 36889999999999
Q ss_pred cCCEEE
Q 045962 121 KGIKCL 126 (423)
Q Consensus 121 ~Gi~Vi 126 (423)
+|+.|.
T Consensus 318 ~Gi~vt 323 (345)
T PRK14457 318 RGVAVS 323 (345)
T ss_pred CCCeEE
Confidence 999985
No 227
>PLN00197 beta-amylase; Provisional
Probab=46.26 E-value=69 Score=33.36 Aligned_cols=68 Identities=15% Similarity=0.312 Sum_probs=49.9
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+-+++.+.|..||.+||+.|-+ +++ -++++.. +. .+| .+...++|++-+++
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmv-DvW----------WGiVE~~----~p-------------~~Y-dWsgY~~L~~mvr~ 175 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMM-DVW----------WGLVERE----SP-------------GVY-NWGGYNELLEMAKR 175 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE-eee----------eeeeccC----CC-------------CcC-CcHHHHHHHHHHHH
Confidence 4567999999999999999964 344 2322210 11 111 36779999999999
Q ss_pred cCCEEEEEEecccCCCC
Q 045962 121 KGIKCLADIVINHRTAE 137 (423)
Q Consensus 121 ~Gi~VilD~V~nh~~~~ 137 (423)
.|+||.+=+-+..++.+
T Consensus 176 ~GLKlq~VmSFHqCGGN 192 (573)
T PLN00197 176 HGLKVQAVMSFHQCGGN 192 (573)
T ss_pred cCCeEEEEEEecccCCC
Confidence 99999999999988875
No 228
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=46.22 E-value=1.3e+02 Score=31.03 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcC
Q 045962 197 VQKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNTM 238 (423)
Q Consensus 197 v~~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~ 238 (423)
..+++.+.++...+ .|+|.+++ |++..+.+....++++.++
T Consensus 161 t~~y~~~~a~~l~~-~Gad~I~IkDtaG~l~P~~v~~Lv~alk 202 (468)
T PRK12581 161 TLNYYLSLVKELVE-MGADSICIKDMAGILTPKAAKELVSGIK 202 (468)
T ss_pred cHHHHHHHHHHHHH-cCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 45678888888876 99999999 9999999888877766554
No 229
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=46.21 E-value=40 Score=32.72 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCEEEEEEec
Q 045962 112 KSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 112 ~~lv~~aH~~Gi~VilD~V~ 131 (423)
...|++||++|++|+--+.+
T Consensus 45 ~~widaAHrnGV~vLGTiif 64 (311)
T PF03644_consen 45 AGWIDAAHRNGVKVLGTIIF 64 (311)
T ss_dssp HHHHHHHHHTT--EEEEEEE
T ss_pred chhHHHHHhcCceEEEEEEe
Confidence 35789999999999887777
No 230
>PRK05939 hypothetical protein; Provisional
Probab=45.97 E-value=28 Score=35.00 Aligned_cols=33 Identities=9% Similarity=0.143 Sum_probs=28.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 98 ~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
..+. ...|...+++++++.||++|+.||+|-+.
T Consensus 138 esp~-NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 138 ETIA-NPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred ECCC-CCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 3555 67899999999999999999999999765
No 231
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=45.84 E-value=50 Score=30.93 Aligned_cols=51 Identities=6% Similarity=0.067 Sum_probs=35.6
Q ss_pred HHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 045962 44 FLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGI 123 (423)
Q Consensus 44 ~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi 123 (423)
.+.+.|+.++++|+++|.|.+-. .+-|. +.+ +.++.++|.+++.+.||
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~----------------------~~~~~---------~~~-~~~~~~~l~~~~~~~gl 61 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR----------------------PHAFA---------PDL-KAGGIKQIKALAQTYQM 61 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC----------------------ccccc---------ccc-CchHHHHHHHHHHHcCC
Confidence 47888999999999999984321 01111 111 23568888999999999
Q ss_pred EEE
Q 045962 124 KCL 126 (423)
Q Consensus 124 ~Vi 126 (423)
+|.
T Consensus 62 ~v~ 64 (275)
T PRK09856 62 PII 64 (275)
T ss_pred eEE
Confidence 984
No 232
>PRK12928 lipoyl synthase; Provisional
Probab=45.82 E-value=68 Score=30.77 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=48.1
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
=|.+.+.+.|+.|+++|++.|.+.+.. .. +.. +..| .+|=+.++|.++-+.|.
T Consensus 216 ET~ed~~etl~~Lrel~~d~v~i~~Yl----------~p---------~~~------~~~v--~~~~~~~~f~~~~~~~~ 268 (290)
T PRK12928 216 ETEDEVIETLRDLRAVGCDRLTIGQYL----------RP---------SLA------HLPV--QRYWTPEEFEALGQIAR 268 (290)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEcCC----------CC---------Ccc------CCce--eeccCHHHHHHHHHHHH
Confidence 478899999999999999999887766 22 111 2222 46667899999999999
Q ss_pred HcCCEEEEEEe
Q 045962 120 KKGIKCLADIV 130 (423)
Q Consensus 120 ~~Gi~VilD~V 130 (423)
+.|.+-|.--.
T Consensus 269 ~~g~~~~~~~p 279 (290)
T PRK12928 269 ELGFSHVRSGP 279 (290)
T ss_pred HcCCceeEecC
Confidence 99987665433
No 233
>PRK09028 cystathionine beta-lyase; Provisional
Probab=45.76 E-value=29 Score=34.93 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=28.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 98 ~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
..+. ...|...+++++++.||++|+.||+|-+..
T Consensus 153 esps-NPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 153 ESPG-SITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred ECCC-CCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 3444 556889999999999999999999998874
No 234
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=45.28 E-value=56 Score=32.68 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRTA 136 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~~ 136 (423)
+.+.++++++-|+++|+-+|+|-|..+++.
T Consensus 203 ~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 232 (403)
T PRK05093 203 TPEFLQGLRELCDQHNALLIFDEVQTGMGR 232 (403)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 468899999999999999999999876654
No 235
>PLN02161 beta-amylase
Probab=45.03 E-value=79 Score=32.61 Aligned_cols=69 Identities=12% Similarity=0.195 Sum_probs=50.4
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
-+.+.+...|..||.+||+.|-+ +++ -++++.. +. .+| .+...++|++-++
T Consensus 114 ~~~~al~~~L~~LK~~GVdGVmv-DVW----------WGiVE~~----~p-------------~~Y-dWsgY~~l~~mvr 164 (531)
T PLN02161 114 KRLKALTVSLKALKLAGVHGIAV-EVW----------WGIVERF----SP-------------LEF-KWSLYEELFRLIS 164 (531)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-Eee----------eeeeecC----CC-------------CcC-CcHHHHHHHHHHH
Confidence 45778999999999999999964 343 2322110 01 111 3677999999999
Q ss_pred HcCCEEEEEEecccCCCC
Q 045962 120 KKGIKCLADIVINHRTAE 137 (423)
Q Consensus 120 ~~Gi~VilD~V~nh~~~~ 137 (423)
+.|+||.+=+-+..++.+
T Consensus 165 ~~GLKlq~vmSFHqCGGN 182 (531)
T PLN02161 165 EAGLKLHVALCFHSNMHL 182 (531)
T ss_pred HcCCeEEEEEEecccCCC
Confidence 999999999999987764
No 236
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=44.89 E-value=44 Score=34.48 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=45.0
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
.+....+.++.+|+||+++.-++=-+ .. +.+ .|.. -.++ -...+-.+++|++|++
T Consensus 69 ~Yhry~eDi~l~~~lG~~~yR~si~W----------sR-i~P-------~g~~----~~~n---~~~~~~Y~~~i~~l~~ 123 (474)
T PRK09852 69 FYHRYKEDIALMAEMGFKVFRTSIAW----------SR-LFP-------QGDE----LTPN---QQGIAFYRSVFEECKK 123 (474)
T ss_pred hhhhhHHHHHHHHHcCCCeEEeecee----------ee-eee-------CCCC----CCCC---HHHHHHHHHHHHHHHH
Confidence 47778889999999999999876554 22 111 0100 0112 1235668999999999
Q ss_pred cCCEEEEEEe
Q 045962 121 KGIKCLADIV 130 (423)
Q Consensus 121 ~Gi~VilD~V 130 (423)
+||++|+.+.
T Consensus 124 ~gi~p~VtL~ 133 (474)
T PRK09852 124 YGIEPLVTLC 133 (474)
T ss_pred cCCEEEEEee
Confidence 9999998875
No 237
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=44.88 E-value=21 Score=24.93 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=15.8
Q ss_pred CCEEEEEECCC-CCcCccCCcCeEEeeccCCC
Q 045962 392 DDKIITKIGPK-MDLRNLIPRNFKVATSGKDY 422 (423)
Q Consensus 392 ~~~~lv~in~~-~~~~~~~~~~~~~~~~g~~~ 422 (423)
+++.+.++|.+ .++...+|..++++++|...
T Consensus 11 ~~~y~F~~N~s~~~~~v~l~~~~~dll~g~~~ 42 (58)
T PF08533_consen 11 GGRYLFLLNFSDEPQTVTLPESYTDLLTGETV 42 (58)
T ss_dssp ETTEEEEEE-SSS-EE----TT-EEEES----
T ss_pred CCEEEEEEECCCCCEEEEcCCCceecccCcce
Confidence 56788999965 44445568899999998653
No 238
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=44.84 E-value=1.3e+02 Score=29.68 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 198 QKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 198 ~~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
.+++.+.++.+++ .|+|-+++ |++....+.-..++++.+
T Consensus 196 ~~~l~~~~~~~~~-~Gad~I~l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 196 PSKVAYVAKELYD-MGCYEISLGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred HHHHHHHHHHHHH-cCCCEEEecCCcCCcCHHHHHHHHHHH
Confidence 3468888888886 99999999 999888887776665544
No 239
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=44.62 E-value=51 Score=34.24 Aligned_cols=31 Identities=13% Similarity=0.182 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEecccCCC
Q 045962 106 GSQNELKSLIQAFNKKGIKCLADIVINHRTA 136 (423)
Q Consensus 106 Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~ 136 (423)
.+.++..+.++.++++||.+.++++++.-+.
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~e 350 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENE 350 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCC
Confidence 3788899999999999999999999986553
No 240
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=44.52 E-value=49 Score=30.24 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEE
Q 045962 108 QNELKSLIQAFNKKGIKCLADI 129 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~ 129 (423)
.++.++||+.|-+.|..|.-.+
T Consensus 118 ~eek~~lIe~a~d~Gf~vlsEv 139 (258)
T COG1809 118 TEEKCRLIERAVDEGFMVLSEV 139 (258)
T ss_pred hHHHHHHHHHHHhcccEEehhh
Confidence 6889999999999999886543
No 241
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=44.44 E-value=2.4e+02 Score=26.85 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=23.2
Q ss_pred ceeeeeeecccCCCCCC---cHHHHHhhhhHHHHcCCcEEEc
Q 045962 24 TILFQGFNWESCNKKGG---WYNFLKKRIPDIASAGITHVWL 62 (423)
Q Consensus 24 ~v~~~~F~~d~~~~~~G---~~~~~~~~L~ylk~lGi~~I~l 62 (423)
.+.++...|-......| +-+.+...+.-+|++|+|+|-+
T Consensus 14 ~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~ 55 (298)
T PF02836_consen 14 PIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT 55 (298)
T ss_dssp EE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE
T ss_pred EEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc
Confidence 45677766532222222 4566777789999999999975
No 242
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=44.38 E-value=40 Score=33.65 Aligned_cols=31 Identities=13% Similarity=-0.014 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEecccCCC
Q 045962 106 GSQNELKSLIQAFNKKGIKCLADIVINHRTA 136 (423)
Q Consensus 106 Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~~ 136 (423)
-+.++..+.++.+++.++.|-+|+.++--+.
T Consensus 137 ~~~~~~~~ai~~~~~~~~~v~~dli~GlPgq 167 (380)
T PRK09057 137 HSVAEALAAIDLAREIFPRVSFDLIYARPGQ 167 (380)
T ss_pred CCHHHHHHHHHHHHHhCccEEEEeecCCCCC
Confidence 4678899999999999999999999986554
No 243
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=44.36 E-value=19 Score=33.22 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.+++++++++||+.||+||+...+.
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecC
Confidence 5889999999999999999996664
No 244
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=43.90 E-value=57 Score=31.94 Aligned_cols=128 Identities=14% Similarity=0.190 Sum_probs=77.0
Q ss_pred CCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCC-CHHHHHHHH
Q 045962 37 KKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYG-SQNELKSLI 115 (423)
Q Consensus 37 ~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~G-t~~~l~~lv 115 (423)
.|.|+++-..+.++-.++.|+++|=+--.. .+.... ++.....+.....| .-.+++.+- .++. +.++++.|.
T Consensus 10 NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~---~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~-~~~~l~~e~~~~L~ 82 (329)
T TIGR03569 10 NHNGSLELAKKLVDAAAEAGADAVKFQTFK---AEDLVS-KNAPKAEYQKINTG--AEESQLEML-KKLELSEEDHRELK 82 (329)
T ss_pred CccCcHHHHHHHHHHHHHhCCCEEEeeeCC---HHHhhC-cccccccccccCCc--CCCcHHHHH-HHhCCCHHHHHHHH
Confidence 467999999999999999999999654321 000000 00000000000011 111222222 2222 479999999
Q ss_pred HHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q 045962 116 QAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNP 195 (423)
Q Consensus 116 ~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p 195 (423)
+.|++.||.++-.. ++
T Consensus 83 ~~~~~~Gi~~~stp------------------------------------------------------------fd---- 98 (329)
T TIGR03569 83 EYCESKGIEFLSTP------------------------------------------------------------FD---- 98 (329)
T ss_pred HHHHHhCCcEEEEe------------------------------------------------------------CC----
Confidence 99999999886421 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeE
Q 045962 196 RVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFT 242 (423)
Q Consensus 196 ~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~ 242 (423)
.+.+.++. ++|+|.+.+=+..-...++++.+.+..+|+++
T Consensus 99 ------~~svd~l~-~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvil 138 (329)
T TIGR03569 99 ------LESADFLE-DLGVPRFKIPSGEITNAPLLKKIARFGKPVIL 138 (329)
T ss_pred ------HHHHHHHH-hcCCCEEEECcccccCHHHHHHHHhcCCcEEE
Confidence 11233443 48999999988888888999998887777553
No 245
>PLN02705 beta-amylase
Probab=43.79 E-value=75 Score=33.50 Aligned_cols=68 Identities=9% Similarity=0.120 Sum_probs=50.0
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+-+++.+.|..||.+||+.|-+ +++ -++++.. +. .+| .+...++|++-+++
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmv-DVW----------WGiVE~~----~P-------------~~Y-dWsgY~~L~~mvr~ 316 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVV-DCW----------WGIVEGW----NP-------------QKY-VWSGYRELFNIIRE 316 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE-eee----------eeEeecC----CC-------------CcC-CcHHHHHHHHHHHH
Confidence 4578999999999999999954 444 3322210 01 111 36779999999999
Q ss_pred cCCEEEEEEecccCCCC
Q 045962 121 KGIKCLADIVINHRTAE 137 (423)
Q Consensus 121 ~Gi~VilD~V~nh~~~~ 137 (423)
.|+||.+=+-+..++.+
T Consensus 317 ~GLKlqvVmSFHqCGGN 333 (681)
T PLN02705 317 FKLKLQVVMAFHEYGGN 333 (681)
T ss_pred cCCeEEEEEEeeccCCC
Confidence 99999999999988875
No 246
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.72 E-value=57 Score=30.57 Aligned_cols=87 Identities=11% Similarity=-0.028 Sum_probs=50.8
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccc-ccc-ccccCCCCCC------CCcccccCCCCCCCCCCHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFH-SII-HQAYSHASLA------GYMPGRLYDLHASSYGSQNELK 112 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~-~~~-~~~~~~~~~~------GY~~~d~~~id~~~~Gt~~~l~ 112 (423)
+.+..++.+..|+++++..|+ -|+...+-+....-. .+. -.+.+-.+-+ .....|...+++.+.|+..+.+
T Consensus 139 ~~~~A~~~~~~l~~~~i~~iE-qP~~~~d~~~~~~l~~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~ 217 (263)
T cd03320 139 SLEEALAFLEALAAGRIEYIE-QPLPPDDLAELRRLAAGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALL 217 (263)
T ss_pred CHHHHHHHHHhhcccCCceEE-CCCChHHHHHHHHhhcCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHH
Confidence 467788888888888888777 244210000000000 000 0000001111 1235667778855789999999
Q ss_pred HHHHHHHHcCCEEEEE
Q 045962 113 SLIQAFNKKGIKCLAD 128 (423)
Q Consensus 113 ~lv~~aH~~Gi~VilD 128 (423)
++++.|+++|+.+++-
T Consensus 218 ~i~~~a~~~gi~~~~~ 233 (263)
T cd03320 218 ELAEEARARGIPAVVS 233 (263)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999874
No 247
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=43.65 E-value=88 Score=30.85 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=44.8
Q ss_pred eeeeeeecccCCCCCCcHHHHHhhhhHHHHcC----CcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCC
Q 045962 25 ILFQGFNWESCNKKGGWYNFLKKRIPDIASAG----ITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDL 100 (423)
Q Consensus 25 v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lG----i~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~i 100 (423)
+++..++ | +.+.+.+-.+++++++ ...|.|.|.+ +. +. ...+|-.+
T Consensus 254 ~LI~GvN-D-------s~e~a~~L~~~lk~l~~~~~~~~VnLIPyn----------~~-------~~-----~~~~~~~p 303 (347)
T PRK14453 254 IMLEGVN-D-------SKEHAEAVVGLLRNRGSWEHLYHVNLIPYN----------ST-------DK-----TPFKFQSS 303 (347)
T ss_pred EeECCCC-C-------CHHHHHHHHHHHhhccccCCcceEEEecCC----------CC-------CC-----CCccCCCC
Confidence 4555666 4 4566777777888774 5688888988 32 01 01122233
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 101 HASSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 101 d~~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
+.++++++.+.+.++|+.|.+
T Consensus 304 ------s~e~v~~f~~~L~~~Gi~vti 324 (347)
T PRK14453 304 ------SAGQIKQFCSTLKSAGISVTV 324 (347)
T ss_pred ------CHHHHHHHHHHHHHCCCcEEE
Confidence 378999999999999998863
No 248
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=43.63 E-value=47 Score=32.98 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHcCCE-EEEEEecccCCCC
Q 045962 106 GSQNELKSLIQAFNKKGIK-CLADIVINHRTAE 137 (423)
Q Consensus 106 Gt~~~l~~lv~~aH~~Gi~-VilD~V~nh~~~~ 137 (423)
.+.++..+.++.+++.|+. |-+|+.++-.+..
T Consensus 132 ~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt 164 (374)
T PRK05799 132 HTFEEFLENYKLARKLGFNNINVDLMFGLPNQT 164 (374)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Confidence 4788999999999999997 7799999866543
No 249
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=43.31 E-value=55 Score=31.86 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=45.4
Q ss_pred CCcHHHHHhhhhHHHHcCC--cEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGI--THVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQ 116 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi--~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~ 116 (423)
+-++..+.+.++..++-+. ..|++..+. . |+ ...=+.++++++++
T Consensus 129 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~----------n----------------Pt-------G~~~~~~~l~~l~~ 175 (363)
T PF00155_consen 129 HLDPEALEEALDELPSKGPRPKAVLICNPN----------N----------------PT-------GSVLSLEELRELAE 175 (363)
T ss_dssp EETHHHHHHHHHTSHTTTETEEEEEEESSB----------T----------------TT-------TBB--HHHHHHHHH
T ss_pred cccccccccccccccccccccceeeecccc----------c----------------cc-------ccccccccccchhh
Confidence 4567777777777766654 666654433 0 11 11114799999999
Q ss_pred HHHHcCCEEEEEEecccCCCC
Q 045962 117 AFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 117 ~aH~~Gi~VilD~V~nh~~~~ 137 (423)
.|.++|+-||+|-+..-....
T Consensus 176 ~~~~~~~~ii~De~y~~~~~~ 196 (363)
T PF00155_consen 176 LAREYNIIIIVDEAYSDLIFG 196 (363)
T ss_dssp HHHHTTSEEEEEETTTTGBSS
T ss_pred hhcccccceeeeeceeccccC
Confidence 999999999999999866544
No 250
>PRK05967 cystathionine beta-lyase; Provisional
Probab=43.17 E-value=31 Score=34.67 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=29.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 97 ~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
...+. ...++..+++++++.||++|+.||+|-++.
T Consensus 155 lesPs-NP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 155 TEAPG-SNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred EECCC-CCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 34455 557899999999999999999999999885
No 251
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=42.92 E-value=65 Score=28.05 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=37.0
Q ss_pred hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 49 IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 49 L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
...|..+|+++..+.... .. .-...|..-+= +.-|...++.++++.||++|++||+
T Consensus 49 ~~~l~~~g~~~~~~~~~~----------~~------------~~~~~Dv~I~i-S~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 49 AMRLMHLGFNVYVVGETT----------TP------------SIKKGDLLIAI-SGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHHhCCCeEEEeCCcc----------cC------------CCCCCCEEEEE-eCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 346788899888765433 11 01122222222 5557889999999999999999975
No 252
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=42.78 E-value=27 Score=34.53 Aligned_cols=85 Identities=14% Similarity=0.217 Sum_probs=53.0
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccc-c----CCCCccccccccccccCCCCCCCCccccc----------------
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFS-L----CCSPRLFFHSIIHQAYSHASLAGYMPGRL---------------- 97 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~-~----~~~~~~~~~~~~~~~~~~~~~~GY~~~d~---------------- 97 (423)
.|=..++...+.-|.+-|=..|..+|++. | +..+|..-++ + =...+++|. .||
T Consensus 90 p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~---p--L~~~~~~y~-iD~~~LE~~~~~~~vkl~i 163 (388)
T COG1168 90 PGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIEN---P--LVEDDGRYE-IDFDALEKAFVDERVKLFI 163 (388)
T ss_pred CcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEec---c--ccccCCcEE-ecHHHHHHHHhcCCccEEE
Confidence 35577888888888888888888899882 1 1111100000 0 012444451 122
Q ss_pred -CCCCCCCCC---CHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 98 -YDLHASSYG---SQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 98 -~~id~~~~G---t~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
..++ ..-| |.|+|.++.+-|.++|+.||-|-+
T Consensus 164 LCnPH-NP~Grvwt~eeL~~i~elc~kh~v~VISDEI 199 (388)
T COG1168 164 LCNPH-NPTGRVWTKEELRKIAELCLRHGVRVISDEI 199 (388)
T ss_pred EeCCC-CCCCccccHHHHHHHHHHHHHcCCEEEeecc
Confidence 2334 4456 589999999999999999998743
No 253
>PLN02849 beta-glucosidase
Probab=41.85 E-value=50 Score=34.37 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=44.4
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
.+.-..+.++-+|+||+++--++=-+ .. +.+ .|-. .++ + .+.+=.++||++|++
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSIsW----------sR-I~P-------~G~g-----~vN-~--~gl~fY~~lid~l~~ 130 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSISW----------SR-LIP-------NGRG-----SVN-P--KGLQFYKNFIQELVK 130 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEeccH----------Hh-cCc-------CCCC-----CCC-H--HHHHHHHHHHHHHHH
Confidence 46678888999999999998765433 11 111 0111 133 2 235568999999999
Q ss_pred cCCEEEEEEecccC
Q 045962 121 KGIKCLADIVINHR 134 (423)
Q Consensus 121 ~Gi~VilD~V~nh~ 134 (423)
+||+.|+-+- |-
T Consensus 131 ~GI~P~VTL~--H~ 142 (503)
T PLN02849 131 HGIEPHVTLF--HY 142 (503)
T ss_pred cCCeEEEeec--CC
Confidence 9999998664 55
No 254
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=41.80 E-value=11 Score=30.06 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=27.5
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 94 PGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 94 ~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
..|+..+|+.+.|+..+.+++++.|+++||.++.
T Consensus 18 a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 18 AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMP 51 (111)
T ss_dssp SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEe
Confidence 3466677767779999999999999999999764
No 255
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.73 E-value=15 Score=32.14 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCLAD 128 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD 128 (423)
+++++.+|++.||++|+++-+-
T Consensus 165 ~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 165 DEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred cHHHHHHHHHHHHHcchHHHhc
Confidence 5799999999999999998664
No 256
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=41.52 E-value=1.3e+02 Score=27.79 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
+++.+.++.+.+ .|+|.+++ |++..+.++-+.++++.+
T Consensus 146 ~~l~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~v~~li~~l 184 (265)
T cd03174 146 EYVLEVAKALEE-AGADEISLKDTVGLATPEEVAELVKAL 184 (265)
T ss_pred HHHHHHHHHHHH-cCCCEEEechhcCCcCHHHHHHHHHHH
Confidence 357777888876 99999999 888888887777765544
No 257
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=41.48 E-value=46 Score=31.14 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=46.1
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCC--------CCHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSY--------GSQNEL 111 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~--------Gt~~~l 111 (423)
.+...+...+..|+++||..-. =.|+ .+ ++...+.---+.|+-.|| ..| ....-+
T Consensus 133 ~~~~~~~~~l~~L~~~G~~ial----DDFG-------tG-----~ssl~~L~~l~~d~iKID-~~fi~~i~~~~~~~~iv 195 (256)
T COG2200 133 DDLDTALALLRQLRELGVRIAL----DDFG-------TG-----YSSLSYLKRLPPDILKID-RSFVRDLETDARDQAIV 195 (256)
T ss_pred cCHHHHHHHHHHHHHCCCeEEE----ECCC-------CC-----HHHHHHHhhCCCCeEEEC-HHHHhhcccCcchHHHH
Confidence 4566788889999999985431 1110 00 000111111244555555 333 234569
Q ss_pred HHHHHHHHHcCCEEEEEEecc
Q 045962 112 KSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 112 ~~lv~~aH~~Gi~VilD~V~n 132 (423)
+.+|+.||+.|++||..-|=+
T Consensus 196 ~~iv~la~~l~~~vvaEGVEt 216 (256)
T COG2200 196 RAIVALAHKLGLTVVAEGVET 216 (256)
T ss_pred HHHHHHHHHCCCEEEEeecCC
Confidence 999999999999999988754
No 258
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=41.36 E-value=33 Score=33.30 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 045962 193 LNPRVQKELSDWMNWLKTEIGFDGWRFDF 221 (423)
Q Consensus 193 ~~p~v~~~~~~~l~~w~~~~gvDGfR~D~ 221 (423)
.+++.|+.+++.+..+++++|.||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 56889999999999999999999999994
No 259
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=41.33 E-value=2.2e+02 Score=27.09 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
+++.+.++...+ .|+|.+++ |++....+.-..++++.+
T Consensus 147 ~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 147 DYVFQLVDFLSD-LPIKRIMLPDTLGILSPFETYTYISDM 185 (280)
T ss_pred HHHHHHHHHHHH-cCCCEEEecCCCCCCCHHHHHHHHHHH
Confidence 478888888876 99999999 998888887777765544
No 260
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=41.21 E-value=37 Score=33.88 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=29.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 98 ~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
..+. ...|...+++++++.||++|+.||+|-+.-
T Consensus 142 esp~-Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 142 EAPS-SITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred ECCC-CCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 3455 667889999999999999999999998864
No 261
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=40.96 E-value=32 Score=33.29 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 045962 192 HLNPRVQKELSDWMNWLKTEIGFDGWRFDF 221 (423)
Q Consensus 192 ~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~ 221 (423)
.++|..|+.+++.+..+++++|.||+-+|.
T Consensus 87 ~~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 87 LNDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred HcCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 357889999999999888899999999993
No 262
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=40.94 E-value=73 Score=29.69 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPA 187 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (423)
.+-+++.|+.||++||.|..--.+=|.+
T Consensus 53 ~~~l~eki~l~~~~gV~v~~GGtl~E~a---------------------------------------------------- 80 (244)
T PF02679_consen 53 EEILKEKIDLAHSHGVYVYPGGTLFEVA---------------------------------------------------- 80 (244)
T ss_dssp CHHHHHHHHHHHCTT-EEEE-HHHHHHH----------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCeEeCCcHHHHHH----------------------------------------------------
Confidence 4779999999999999987644333222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcCC--CeEEEeec
Q 045962 188 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNTMP--HFTVAEKW 247 (423)
Q Consensus 188 ~dln~~~p~v~~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~p--~~~~gE~~ 247 (423)
..+..+.+++.+.. ++|+|.+-+ |..-.++.+-+.++++.... +.++.|+-
T Consensus 81 --------~~q~~~~~yl~~~k-~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 81 --------YQQGKFDEYLEECK-ELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp --------HHTT-HHHHHHHHH-HCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred --------HhcChHHHHHHHHH-HcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 12334555555554 599999999 66678899999888887665 55888875
No 263
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=40.86 E-value=32 Score=32.99 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 045962 192 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 223 (423)
Q Consensus 192 ~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~ 223 (423)
.++|..|+.+++.+..+++++|.||+-||-=.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~ 114 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFEE 114 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecCC
Confidence 46788999999999888888999999999743
No 264
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=40.36 E-value=30 Score=33.31 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
+.++++++++.||++|+.||+|-.
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDea 167 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDGA 167 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeechH
Confidence 579999999999999999999964
No 265
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=40.26 E-value=4e+02 Score=29.37 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHc-CCEEEEEEecccCCCCC
Q 045962 108 QNELKSLIQAFNKK-GIKCLADIVINHRTAEK 138 (423)
Q Consensus 108 ~~~l~~lv~~aH~~-Gi~VilD~V~nh~~~~~ 138 (423)
.+.++++++++|++ |-++++-+ +|.+...
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~ 503 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRKG 503 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCcccc
Confidence 57899999999999 68888776 8887653
No 266
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=40.13 E-value=43 Score=28.85 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
.-++.++..+.++.++++|+.|.+.+++..-.
T Consensus 120 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~ 151 (204)
T cd01335 120 SGESFKERLEALKELREAGLGLSTTLLVGLGD 151 (204)
T ss_pred CCcCHHHHHHHHHHHHHcCCCceEEEEEecCC
Confidence 45578999999999999999999999997543
No 267
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=39.78 E-value=66 Score=25.95 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
+.-|...+..+.++.|+++|.+||.
T Consensus 54 S~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 54 SQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred eCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 5567888899999999999999875
No 268
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=39.72 E-value=37 Score=29.10 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=38.9
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
.||..+.+..+-|+++||.+-- =|. +.--|.|.+.+++++|+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~--~Vv------------------------------------SAHRTPe~m~~ya~~a~ 54 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEV--RVV------------------------------------SAHRTPEKMFEYAEEAE 54 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEE--EEE------------------------------------eccCCHHHHHHHHHHHH
Confidence 4688888888899999985431 011 22236788999999999
Q ss_pred HcCCEEEEEE
Q 045962 120 KKGIKCLADI 129 (423)
Q Consensus 120 ~~Gi~VilD~ 129 (423)
++|++||+=.
T Consensus 55 ~~g~~viIAg 64 (162)
T COG0041 55 ERGVKVIIAG 64 (162)
T ss_pred HCCCeEEEec
Confidence 9999999753
No 269
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=39.70 E-value=34 Score=32.89 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 045962 193 LNPRVQKELSDWMNWLKTEIGFDGWRFDFV 222 (423)
Q Consensus 193 ~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a 222 (423)
.++..|+.+++.+..+++++|.||+-||==
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE 117 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWE 117 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeeccc
Confidence 578889999999998888899999999943
No 270
>PRK11059 regulatory protein CsrD; Provisional
Probab=39.43 E-value=42 Score=35.99 Aligned_cols=76 Identities=17% Similarity=0.066 Sum_probs=48.7
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCC--------CCHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSY--------GSQNEL 111 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~--------Gt~~~l 111 (423)
.+...+.+.+..|+++||.... -.++ .+ +....+-..-+.||-.+| +.| .+..-+
T Consensus 530 ~~~~~~~~~l~~L~~~G~~iai----ddfG-------~g-----~~s~~~L~~l~~d~iKid-~s~v~~i~~~~~~~~~v 592 (640)
T PRK11059 530 QHISRLRPVLRMLRGLGCRLAV----DQAG-------LT-----VVSTSYIKELNVELIKLH-PSLVRNIHKRTENQLFV 592 (640)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE----ECCC-------CC-----cccHHHHHhCCCCEEEEC-HHHHhhhhcCchhHHHH
Confidence 3577889999999999997653 1110 00 000111122356666666 433 233448
Q ss_pred HHHHHHHHHcCCEEEEEEecc
Q 045962 112 KSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 112 ~~lv~~aH~~Gi~VilD~V~n 132 (423)
+.+++.||..|++||+.-|=+
T Consensus 593 ~sli~~a~~~~i~viAegVEt 613 (640)
T PRK11059 593 RSLVGACAGTETQVFATGVES 613 (640)
T ss_pred HHHHHHHHHCCCeEEEEEeCC
Confidence 999999999999999998865
No 271
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=39.37 E-value=67 Score=32.86 Aligned_cols=31 Identities=6% Similarity=0.227 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHcC-CEEEEEEecccCCC
Q 045962 106 GSQNELKSLIQAFNKKG-IKCLADIVINHRTA 136 (423)
Q Consensus 106 Gt~~~l~~lv~~aH~~G-i~VilD~V~nh~~~ 136 (423)
-+.++..+.++.+++.| +.|.+|++++.-+.
T Consensus 196 ~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 196 DDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred CCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 36788999999999999 89999999987764
No 272
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=39.28 E-value=1.1e+02 Score=23.97 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=37.5
Q ss_pred HHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHc--
Q 045962 44 FLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKK-- 121 (423)
Q Consensus 44 ~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~-- 121 (423)
-+.+....|++-|+++ ++.|.. +.|. |.++++-+++++||+.
T Consensus 20 yVa~~i~~l~~sGl~y-~~~pm~-------------------------------T~IE----Ge~dev~~~i~~~~e~~~ 63 (97)
T TIGR00106 20 YVAAAIEVLKESGLKY-ELHPMG-------------------------------TLIE----GDLDELFEAIKAIHEAVL 63 (97)
T ss_pred HHHHHHHHHHHcCCCe-EecCCc-------------------------------cEEe----cCHHHHHHHHHHHHHHHH
Confidence 4555678888888854 455544 2333 6677777777777664
Q ss_pred --CC-EEEEEEecccC
Q 045962 122 --GI-KCLADIVINHR 134 (423)
Q Consensus 122 --Gi-~VilD~V~nh~ 134 (423)
|. +|+..+-+++-
T Consensus 64 ~~G~~Rv~t~ikid~R 79 (97)
T TIGR00106 64 EKGSDRVYTSIKIDTR 79 (97)
T ss_pred HcCCCeEEEEEEEEec
Confidence 65 99999988865
No 273
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=39.12 E-value=65 Score=29.43 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=38.5
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
++-...++.++.+.+.|+++|.+.|+. .. .+..++++|.
T Consensus 39 ~d~~~q~~~i~~~i~~~~d~Iiv~~~~----------~~-------------------------------~~~~~l~~~~ 77 (257)
T PF13407_consen 39 NDPEEQIEQIEQAISQGVDGIIVSPVD----------PD-------------------------------SLAPFLEKAK 77 (257)
T ss_dssp TTHHHHHHHHHHHHHTTESEEEEESSS----------TT-------------------------------TTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCEEEecCCC----------HH-------------------------------HHHHHHHHHh
Confidence 567888888999999999999888766 22 2567888999
Q ss_pred HcCCEEEE
Q 045962 120 KKGIKCLA 127 (423)
Q Consensus 120 ~~Gi~Vil 127 (423)
++||.||+
T Consensus 78 ~~gIpvv~ 85 (257)
T PF13407_consen 78 AAGIPVVT 85 (257)
T ss_dssp HTTSEEEE
T ss_pred hcCceEEE
Confidence 99999998
No 274
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=38.93 E-value=1.1e+02 Score=29.43 Aligned_cols=103 Identities=21% Similarity=0.269 Sum_probs=58.8
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
++..+.+-.--+++.|||+|-|.-+. .+ . ..+. +.| .+.+++|.+....
T Consensus 55 ~~~R~~~YARllASiGINgvvlNNVN----------a~--------~----------~~Lt-~~~--l~~v~~lAdvfRp 103 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLNNVN----------AN--------P----------KLLT-PEY--LDKVARLADVFRP 103 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S-SS--------------------C----------GGGS-TTT--HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhhcCCceEEecccc----------cC--------h----------hhcC-HHH--HHHHHHHHHHHhh
Confidence 45566666777899999999988877 33 1 2233 333 7899999999999
Q ss_pred cCCEEEEEEecccCCCCCCCCcccceeccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 045962 121 KGIKCLADIVINHRTAEKKDRRGIWCIFEGGTPDKRLDWGPSFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPRVQKE 200 (423)
Q Consensus 121 ~Gi~VilD~V~nh~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~ 200 (423)
-||||.|-+-+. +.. ...+++..|.-+|+|++.
T Consensus 104 YGIkv~LSvnFa--sP~---------------------------------------------~lggL~TaDPld~~V~~W 136 (328)
T PF07488_consen 104 YGIKVYLSVNFA--SPI---------------------------------------------ELGGLPTADPLDPEVRQW 136 (328)
T ss_dssp TT-EEEEEE-TT--HHH---------------------------------------------HTTS-S---TTSHHHHHH
T ss_pred cCCEEEEEeecc--CCc---------------------------------------------ccCCcCcCCCCCHHHHHH
Confidence 999999977553 210 011222355667899888
Q ss_pred HHHHHHHHHHh-cCCCeEEecc
Q 045962 201 LSDWMNWLKTE-IGFDGWRFDF 221 (423)
Q Consensus 201 ~~~~l~~w~~~-~gvDGfR~D~ 221 (423)
..+.+...-+. -++-||=+-|
T Consensus 137 W~~k~~eIY~~IPDfgGflVKA 158 (328)
T PF07488_consen 137 WKDKADEIYSAIPDFGGFLVKA 158 (328)
T ss_dssp HHHHHHHHHHH-TT--EEEE--
T ss_pred HHHHHHHHHHhCCCccceEEEe
Confidence 88877665442 3677777743
No 275
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=38.82 E-value=2e+02 Score=27.23 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
+++.+.++...+ .|+|.+++ |++....++...++++.+
T Consensus 151 ~~~~~~~~~~~~-~g~~~i~l~DT~G~~~P~~v~~lv~~l 189 (273)
T cd07941 151 EYALATLKAAAE-AGADWLVLCDTNGGTLPHEIAEIVKEV 189 (273)
T ss_pred HHHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 456777777775 89999997 999988888777765544
No 276
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.78 E-value=1.1e+02 Score=30.51 Aligned_cols=56 Identities=9% Similarity=-0.009 Sum_probs=38.4
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+.+.+.+-.+.++++++ .|-|.|.+ +. ...+| ... +.+.++++.+.+.+
T Consensus 276 s~e~a~~La~ll~~l~~-~VnLIPYN----------~~---------~~~~~-----~~p------s~e~v~~f~~~L~~ 324 (372)
T PRK11194 276 GTEHAHQLAELLKDTPC-KINLIPWN----------PF---------PGAPY-----GRS------SNSRIDRFSKVLME 324 (372)
T ss_pred CHHHHHHHHHHHhcCCc-eEEEecCC----------CC---------CCCCC-----CCC------CHHHHHHHHHHHHH
Confidence 45566666677788875 88999988 32 11122 222 36889999999999
Q ss_pred cCCEEEE
Q 045962 121 KGIKCLA 127 (423)
Q Consensus 121 ~Gi~Vil 127 (423)
+|+.|.+
T Consensus 325 ~Gi~vti 331 (372)
T PRK11194 325 YGFTVIV 331 (372)
T ss_pred CCCeEEE
Confidence 9999964
No 277
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=38.77 E-value=56 Score=32.76 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=43.9
Q ss_pred hhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 045962 47 KRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCL 126 (423)
Q Consensus 47 ~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~Vi 126 (423)
++|..|+++|||.|.|.- .+ .+..-+..++ +--+.++..+.++.+++.+..|-
T Consensus 123 e~L~~l~~~GvnrisiGv------------QS-------------~~~~~L~~l~--R~~~~~~~~~~i~~~~~~~~~v~ 175 (394)
T PRK08898 123 EKFAQFRASGVNRLSIGI------------QS-------------FNDAHLKALG--RIHDGAEARAAIEIAAKHFDNFN 175 (394)
T ss_pred HHHHHHHHcCCCeEEEec------------cc-------------CCHHHHHHhC--CCCCHHHHHHHHHHHHHhCCceE
Confidence 778888888888887643 22 1111112222 22356788889999999999999
Q ss_pred EEEecccCCCC
Q 045962 127 ADIVINHRTAE 137 (423)
Q Consensus 127 lD~V~nh~~~~ 137 (423)
+|++++--+..
T Consensus 176 ~dlI~GlPgqt 186 (394)
T PRK08898 176 LDLMYALPGQT 186 (394)
T ss_pred EEEEcCCCCCC
Confidence 99999976643
No 278
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=38.76 E-value=67 Score=28.03 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHcC-CEEEEEEecccCC
Q 045962 106 GSQNELKSLIQAFNKKG-IKCLADIVINHRT 135 (423)
Q Consensus 106 Gt~~~l~~lv~~aH~~G-i~VilD~V~nh~~ 135 (423)
++.+.+.+.++.++++| +.|...++++...
T Consensus 133 ~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~ 163 (216)
T smart00729 133 HTVEDVLEAVEKLREAGPIKVSTDLIVGLPG 163 (216)
T ss_pred CCHHHHHHHHHHHHHhCCcceEEeEEecCCC
Confidence 46799999999999999 9999999988653
No 279
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=38.69 E-value=39 Score=31.66 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCLADI 129 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~ 129 (423)
+.+++++|++.||+.||.|++.+
T Consensus 141 ~~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 141 DDEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred CHHHHHHHHHHHHHcCCeeEEEE
Confidence 46789999999999999999986
No 280
>PRK04302 triosephosphate isomerase; Provisional
Probab=38.65 E-value=70 Score=29.18 Aligned_cols=21 Identities=10% Similarity=0.333 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEE
Q 045962 108 QNELKSLIQAFNKKGIKCLAD 128 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD 128 (423)
.++..+++++|++.||.+|++
T Consensus 100 ~~e~~~~v~~a~~~Gl~~I~~ 120 (223)
T PRK04302 100 LADIEAVVERAKKLGLESVVC 120 (223)
T ss_pred HHHHHHHHHHHHHCCCeEEEE
Confidence 466899999999999999974
No 281
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=38.60 E-value=1.4e+02 Score=28.93 Aligned_cols=69 Identities=13% Similarity=0.066 Sum_probs=44.1
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCC-CCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHA-SLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~-~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
+++.+.+.+..+.++||++|-|-|+-+... +. .. +...|++- --+++-|++++
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~------Kd-------~~~gs~a~~~~-------------g~v~~air~iK 102 (320)
T cd04824 49 GVNRLEEFLRPLVAKGLRSVILFGVPLKPG------KD-------DRSGSAADDED-------------GPVIQAIKLIR 102 (320)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCcccc------CC-------cCccccccCCC-------------ChHHHHHHHHH
Confidence 478899999999999999999999862100 11 01 22222222 12444444444
Q ss_pred Hc--CCEEEEEEecccCC
Q 045962 120 KK--GIKCLADIVINHRT 135 (423)
Q Consensus 120 ~~--Gi~VilD~V~nh~~ 135 (423)
+. .|-||.|+.+....
T Consensus 103 ~~~pdl~vi~Dvclc~YT 120 (320)
T cd04824 103 EEFPELLIACDVCLCEYT 120 (320)
T ss_pred HhCCCcEEEEeeeccCCC
Confidence 44 89999999997554
No 282
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=38.38 E-value=39 Score=32.83 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 045962 192 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 222 (423)
Q Consensus 192 ~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~a 222 (423)
..++..|+.+++.+..|++++|.||+-+|--
T Consensus 86 ~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE 116 (334)
T smart00636 86 LSDPASRKKFIDSIVSFLKKYGFDGIDIDWE 116 (334)
T ss_pred HCCHHHHHHHHHHHHHHHHHcCCCeEEECCc
Confidence 3568899999999999999999999999953
No 283
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=38.25 E-value=2.2e+02 Score=27.86 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
.+.+++|++++|++|-++++-+ +|.+..
T Consensus 76 i~~lr~la~~vh~~ga~~~~QL--~H~G~~ 103 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQL--WHVGRV 103 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEEc--ccCccC
Confidence 5789999999999999999854 687754
No 284
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=38.04 E-value=35 Score=28.07 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEE
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLAD 128 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD 128 (423)
.++-+..|++.+-+...++||+|++|
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 67778899999999999999999998
No 285
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=38.03 E-value=35 Score=25.33 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
+.-|...+..++++.|+++|.++|.
T Consensus 55 S~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 55 SYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred ECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 4446678899999999999999874
No 286
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=38.00 E-value=44 Score=33.05 Aligned_cols=29 Identities=10% Similarity=0.266 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
...|+..+++++++.||++|+.||+|-++
T Consensus 147 NP~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 147 NPLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 44788999999999999999999999876
No 287
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=37.98 E-value=82 Score=30.70 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
+.++++++++.|+++|+-||.|-++...
T Consensus 154 ~~~~~~~l~~~a~~~~~~ii~De~y~~~ 181 (350)
T TIGR03537 154 PRSYLKETIAMCREHGIILCSDECYTEI 181 (350)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccccc
Confidence 4788999999999999999999997654
No 288
>PRK09064 5-aminolevulinate synthase; Validated
Probab=37.91 E-value=49 Score=33.08 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
..-|+..+++++++-|+++|+-||+|-+..
T Consensus 189 s~~G~~~~l~~i~~l~~~~~~~livDEa~~ 218 (407)
T PRK09064 189 SMDGDIAPIAEICDLADKYNALTYLDEVHA 218 (407)
T ss_pred CCCccccCHHHHHHHHHHcCCEEEEECCCc
Confidence 444666779999999999999999998864
No 289
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=37.85 E-value=75 Score=31.77 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.+.|++|.+.|+++|+-+|+|-|.-.++
T Consensus 198 ~~~~l~~l~~lc~~~g~llI~DEv~tG~G 226 (397)
T TIGR03246 198 DPAFLKGLRELCDRHNALLIFDEVQTGVG 226 (397)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhcCC
Confidence 36889999999999999999999986554
No 290
>PRK07050 cystathionine beta-lyase; Provisional
Probab=37.76 E-value=43 Score=33.61 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEeccc
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh 133 (423)
...|...+++++++.||++|+.||+|-....
T Consensus 161 Np~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 161 SVTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CCCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 5567899999999999999999999998654
No 291
>PLN02509 cystathionine beta-lyase
Probab=37.60 E-value=45 Score=34.36 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=28.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
.+. ...|...+++++++.||++|+.||+|-..
T Consensus 225 sPs-NPtG~i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 225 SPT-NPRQQISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred CCC-CCCCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 455 66789999999999999999999999884
No 292
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=37.38 E-value=74 Score=32.87 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=43.6
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
.+.-..+.++.+|+||+++--++=-+ .. +.+ .|.. -.++ -...+=.++||++|.+
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSIsW----------sR-I~P-------~G~~----~~~N---~~gl~~Y~~lid~l~~ 121 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSIAW----------TR-IFP-------KGDE----AQPN---EEGLKFYDDMFDELLK 121 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEecccc----------ee-ecc-------CCCC----CCCC---HHHHHHHHHHHHHHHH
Confidence 45567888999999999998765433 11 111 0110 0122 1235668999999999
Q ss_pred cCCEEEEEEe
Q 045962 121 KGIKCLADIV 130 (423)
Q Consensus 121 ~Gi~VilD~V 130 (423)
+||+.|+.+.
T Consensus 122 ~GI~P~vTL~ 131 (477)
T PRK15014 122 YNIEPVITLS 131 (477)
T ss_pred cCCEEEEEee
Confidence 9999999874
No 293
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=36.93 E-value=1.1e+02 Score=29.18 Aligned_cols=27 Identities=7% Similarity=-0.059 Sum_probs=24.7
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
.+.+..++...+.+++|+++|-++|++
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 568999999999999999999998877
No 294
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=36.77 E-value=69 Score=29.19 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=17.9
Q ss_pred HHhhhhHHHHcCCcEEEcCCcc
Q 045962 45 LKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 45 ~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
+...+..||+||.+.|=..|+-
T Consensus 137 vetAiaml~dmG~~SiKffPM~ 158 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMG 158 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecC
Confidence 5556889999999999877765
No 295
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.46 E-value=1.2e+02 Score=30.12 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=43.6
Q ss_pred eeeeeeecccCCCCCCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCC
Q 045962 25 ILFQGFNWESCNKKGGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASS 104 (423)
Q Consensus 25 v~~~~F~~d~~~~~~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~ 104 (423)
+++..++ | +.+.+.+-.+.++++++ .|.|.|..+ . ....| ..++
T Consensus 269 vLI~GvN-D-------s~e~a~~La~llk~l~~-~VnLIPyn~----------~---------~~~~~-----~~ps--- 312 (356)
T PRK14462 269 LVIKDVN-D-------DLKSAKKLVKLLNGIKA-KVNLILFNP----------H---------EGSKF-----ERPS--- 312 (356)
T ss_pred EEECCCC-C-------CHHHHHHHHHHHhhcCc-EEEEEeCCC----------C---------CCCCC-----CCCC---
Confidence 4556666 4 45667777778888875 899999882 2 11122 3333
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEE
Q 045962 105 YGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 105 ~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
.+.++++.+.+.++|+.|.+
T Consensus 313 ---~e~i~~f~~~l~~~gi~vtv 332 (356)
T PRK14462 313 ---LEDMIKFQDYLNSKGLLCTI 332 (356)
T ss_pred ---HHHHHHHHHHHHHCCCcEEE
Confidence 57888888889999998854
No 296
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=36.37 E-value=89 Score=24.26 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=16.7
Q ss_pred EEeecCCEEEEEEC---CEEEEEECCC
Q 045962 379 ILASQSDLYVAAID---DKIITKIGPK 402 (423)
Q Consensus 379 ~~~~~~~~~~~~r~---~~~lv~in~~ 402 (423)
+++.+++.++++|+ .++|++++|.
T Consensus 1 piy~d~~~~a~rKG~~g~qvi~vltN~ 27 (91)
T PF09260_consen 1 PIYSDDSTIAFRKGPDGSQVIVVLTNQ 27 (91)
T ss_dssp EEEEETTEEEEEESSTTT-EEEEEE-S
T ss_pred CeEECCcEEEEEeCCCCCEEEEEEeCC
Confidence 36788999999984 4677777653
No 297
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=36.30 E-value=28 Score=19.86 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.5
Q ss_pred HHHHHhhhhHHHHcCCc
Q 045962 42 YNFLKKRIPDIASAGIT 58 (423)
Q Consensus 42 ~~~~~~~L~ylk~lGi~ 58 (423)
-+.+..+++||+++|++
T Consensus 15 ~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 15 EKKLKPKVEFLKELGFS 31 (31)
T ss_pred HHHhhHHHHHHHHcCCC
Confidence 46788899999999984
No 298
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=36.22 E-value=13 Score=37.56 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 102 ASSYGSQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 102 ~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
|.-+|-.-+++.+++.||++|+.|++|-.
T Consensus 177 PTY~Gv~~di~~I~~~~h~~~~~llvDEA 205 (417)
T PF01276_consen 177 PTYYGVCYDIKEIAEICHKHGIPLLVDEA 205 (417)
T ss_dssp S-TTSEEE-HHHHHHHHCCTECEEEEE-T
T ss_pred CCCCeEEECHHHHHHHhcccCCEEEEEcc
Confidence 45667778899999999999999999953
No 299
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=36.08 E-value=69 Score=25.45 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.4
Q ss_pred HHHhhhhHHHHcCCcEEEcCCcc
Q 045962 44 FLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 44 ~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
.+.+-++.+++.|++.|++.|++
T Consensus 43 ~i~~~l~~l~~~G~~~i~lvPl~ 65 (103)
T cd03413 43 GLDDVLAKLKKAGIKKVTLMPLM 65 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEehh
Confidence 35666677899999999999999
No 300
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.06 E-value=1.1e+02 Score=30.40 Aligned_cols=21 Identities=14% Similarity=0.534 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~Vil 127 (423)
+.+.+.++.+.++++|+.|.+
T Consensus 311 s~e~l~~f~~~L~~~gi~v~i 331 (356)
T PRK14455 311 PKEDIFAFEDTLKKNGVNCTI 331 (356)
T ss_pred CHHHHHHHHHHHHHCCCcEEE
Confidence 368899999999999999854
No 301
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=35.88 E-value=54 Score=32.68 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
..-|...+++++++.||++|+-+|+|-+..
T Consensus 188 ~~~G~~~~l~~i~~l~~~~~~~livDea~~ 217 (402)
T TIGR01821 188 SMDGDIAPIEEICDLADKYGALTYLDEVHA 217 (402)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEeCccc
Confidence 445777779999999999999999999854
No 302
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=35.85 E-value=82 Score=30.81 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=42.5
Q ss_pred HHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 045962 45 LKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIK 124 (423)
Q Consensus 45 ~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~ 124 (423)
+.+.+.....-.|-+|++=|+. -+ .|..+. . + +-+++|.+.|+++|+-
T Consensus 166 ~~~~~~~~~~~~iaavivEPi~----------g~-----------~G~~~~-----~-~-----~~l~~l~~lc~~~gil 213 (339)
T PF00202_consen 166 LEELIAALNADEIAAVIVEPIQ----------GE-----------GGMIPP-----P-P-----EYLRELRELCREHGIL 213 (339)
T ss_dssp HHHHHHHHHGGGEEEEEEESSB----------TT-----------TTSBEE-------T-----THHHHHHHHHHHTT-E
T ss_pred HHHHHHhhcCCcEEEEEEeccc----------cc-----------cCcccc-----c-c-----chhhehcccccccccc
Confidence 4444555555668899999977 22 232222 2 3 4589999999999999
Q ss_pred EEEEEecccCCCCC
Q 045962 125 CLADIVINHRTAEK 138 (423)
Q Consensus 125 VilD~V~nh~~~~~ 138 (423)
+|+|=|.--+++..
T Consensus 214 lI~DEV~tG~gRtG 227 (339)
T PF00202_consen 214 LIADEVQTGFGRTG 227 (339)
T ss_dssp EEEEETTTTTTTTS
T ss_pred eecccccccccccC
Confidence 99999998776543
No 303
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=35.68 E-value=2.8e+02 Score=26.03 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 200 ELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 200 ~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
++.+.++...+ .|+|.+++ |++....++-..++++.+
T Consensus 142 ~l~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 142 DLLRVYRAVDK-LGVNRVGIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred HHHHHHHHHHH-cCCCEEEECCcCCCCCHHHHHHHHHHH
Confidence 45666666665 89999999 888888888777775544
No 304
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=35.60 E-value=38 Score=33.75 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 98 ~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
..++ ...|+..+++++++.||++|+.|++|-+.-
T Consensus 165 ~~~~-~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 165 THVD-GNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred ECCC-CCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 3456 678999999999999999999999999743
No 305
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=35.57 E-value=33 Score=33.95 Aligned_cols=32 Identities=6% Similarity=0.078 Sum_probs=26.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
.+. ...|...+++++++.||++|+.||+|-+.
T Consensus 133 ~~~-np~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 133 SPT-NPTLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CCC-CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 344 55677888999999999999999999874
No 306
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=35.54 E-value=1.1e+02 Score=27.54 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=40.4
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
.++.+.+.+..++++|++.+-+..+. +. ..|| .+-+++|+++|+
T Consensus 70 E~~~M~~dI~~~~~~GadG~VfG~L~----------~d-------------------g~iD------~~~~~~Li~~a~- 113 (201)
T PF03932_consen 70 EIEIMKEDIRMLRELGADGFVFGALT----------ED-------------------GEID------EEALEELIEAAG- 113 (201)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE--BE----------TT-------------------SSB-------HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEeEC----------CC-------------------CCcC------HHHHHHHHHhcC-
Confidence 57888999999999999999887777 33 2478 688999999986
Q ss_pred cCCEEEEEEeccc
Q 045962 121 KGIKCLADIVINH 133 (423)
Q Consensus 121 ~Gi~VilD~V~nh 133 (423)
|+.+.+=-.+++
T Consensus 114 -~~~~tFHRAfD~ 125 (201)
T PF03932_consen 114 -GMPVTFHRAFDE 125 (201)
T ss_dssp -TSEEEE-GGGGG
T ss_pred -CCeEEEeCcHHH
Confidence 888877443333
No 307
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=35.53 E-value=31 Score=33.82 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=28.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.++ ...|+..+++++++.||++|+.||+|-+..
T Consensus 147 ~p~-n~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 147 HVD-GNYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCC-CCCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 445 678999999999999999999999999865
No 308
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=35.46 E-value=46 Score=30.41 Aligned_cols=86 Identities=9% Similarity=0.001 Sum_probs=51.0
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCcc--cccc-cc-ccccCCCCCC------CCcccccCCCCCCCCCCHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRL--FFHS-II-HQAYSHASLA------GYMPGRLYDLHASSYGSQNE 110 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~--~~~~-~~-~~~~~~~~~~------GY~~~d~~~id~~~~Gt~~~ 110 (423)
+.+..++.++.|++.++..|+ -|+..-+-+... .... +. ..+..-...+ --...|...+++.+.|+..+
T Consensus 106 ~~~~a~~~~~~l~~~~i~~iE-eP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~ 184 (229)
T cd00308 106 TPKEAIRLIRALEKYGLAWIE-EPCAPDDLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTE 184 (229)
T ss_pred CHHHHHHHHHHhhhcCCCeEE-CCCCccCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 467788888899898988888 455321000000 0000 00 0000000000 01346677888777899999
Q ss_pred HHHHHHHHHHcCCEEEE
Q 045962 111 LKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 111 l~~lv~~aH~~Gi~Vil 127 (423)
.+++++.|+++|+.++.
T Consensus 185 ~~~i~~~a~~~gi~~~~ 201 (229)
T cd00308 185 SRRAADLAEAFGIRVMV 201 (229)
T ss_pred HHHHHHHHHHcCCEEee
Confidence 99999999999998876
No 309
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=35.35 E-value=33 Score=33.21 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
..-|...+++++++.||++|+.||+|-+-
T Consensus 143 ~~tG~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 143 SMDGDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred cCCCCccCHHHHHHHHHHcCCEEEEEccc
Confidence 44577778999999999999999999994
No 310
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=35.29 E-value=42 Score=33.05 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 045962 192 HLNPRVQKELSDWMNWLKTEIGFDGWRFDF 221 (423)
Q Consensus 192 ~~~p~v~~~~~~~l~~w~~~~gvDGfR~D~ 221 (423)
..++..|+.+++.+..|++++|.||+-||-
T Consensus 91 ~~~~~~r~~fi~~iv~~l~~~~~DGidiDw 120 (362)
T cd02872 91 AASPENRKTFIKSAIAFLRKYGFDGLDLDW 120 (362)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence 356788999999999899999999999994
No 311
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=35.11 E-value=1.8e+02 Score=28.11 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=44.5
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+.+.+.+.+..+.++|+++|-|-|+.+-.. +. ..++..|++-. -+++-|+++++
T Consensus 52 s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~------KD-------~~gs~A~~~~g-------------~v~~air~iK~ 105 (320)
T cd04823 52 SIDELLKEAEEAVDLGIPAVALFPVTPPEL------KS-------EDGSEAYNPDN-------------LVCRAIRAIKE 105 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCccc------CC-------cccccccCCCC-------------hHHHHHHHHHH
Confidence 478899999999999999999999861100 11 12222233221 14444444444
Q ss_pred c--CCEEEEEEecccCC
Q 045962 121 K--GIKCLADIVINHRT 135 (423)
Q Consensus 121 ~--Gi~VilD~V~nh~~ 135 (423)
. .|-||.|+.+....
T Consensus 106 ~~p~l~vi~DVclc~YT 122 (320)
T cd04823 106 AFPELGIITDVALDPYT 122 (320)
T ss_pred hCCCcEEEEeeeccCCC
Confidence 4 89999999997554
No 312
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=35.01 E-value=1.1e+02 Score=30.37 Aligned_cols=86 Identities=7% Similarity=-0.126 Sum_probs=51.7
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCcccccc-ccccccCCCCCC---------CCcccccCCCCCCCCCCHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHS-IIHQAYSHASLA---------GYMPGRLYDLHASSYGSQNE 110 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~-~~~~~~~~~~~~---------GY~~~d~~~id~~~~Gt~~~ 110 (423)
+.+..+..+..|+++|+..|+ =|+-..+-+....-.. ...+=-.+.+-+ .....|...+|+.+.|+..+
T Consensus 175 ~~~~A~~~~~~l~~~~l~~iE-eP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~ 253 (361)
T cd03322 175 TPNQAARFGKDVEPYRLFWME-DPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITP 253 (361)
T ss_pred CHHHHHHHHHHhhhcCCCEEE-CCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 367788888888999988887 3443110000000000 000000001111 14467788899557799999
Q ss_pred HHHHHHHHHHcCCEEEE
Q 045962 111 LKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 111 l~~lv~~aH~~Gi~Vil 127 (423)
.+++++.|+++|++++.
T Consensus 254 ~~~ia~~A~~~gi~~~~ 270 (361)
T cd03322 254 ARKIADLASLYGVRTGW 270 (361)
T ss_pred HHHHHHHHHHcCCeeec
Confidence 99999999999999974
No 313
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=34.76 E-value=40 Score=32.83 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=30.2
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 93 MPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 93 ~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
...|...+|+.+.|+..+.+++++.|+++|++|++
T Consensus 245 ~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~ 279 (324)
T TIGR01928 245 GNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWI 279 (324)
T ss_pred CCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEE
Confidence 34666778867789999999999999999999985
No 314
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=34.56 E-value=36 Score=33.74 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
...|...+++++++.||++|+.||+|-.+
T Consensus 147 NPtg~~~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 147 NPLMVEFDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred CCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 44577778999999999999999999985
No 315
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=34.48 E-value=92 Score=28.71 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHcCCEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCL 126 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~Vi 126 (423)
+.++++++.+.+++.|++|+
T Consensus 226 ~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 226 SKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CHHHHHHHHHHHHHcCCccc
Confidence 58999999999999998874
No 316
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=34.29 E-value=83 Score=31.46 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 104 SYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
..|..-+++++++.||++|+.+|+|-+..
T Consensus 150 ~~G~i~~l~~i~~l~~~~g~~livDe~~~ 178 (392)
T PLN03227 150 NTGTLAPLKELVALKEEFHYRLILDESFS 178 (392)
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEECccc
Confidence 34566668999999999999999999985
No 317
>PRK05942 aspartate aminotransferase; Provisional
Probab=34.26 E-value=93 Score=30.92 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+.||.|-++....
T Consensus 188 s~~~~~~i~~~a~~~~~~iI~De~y~~~~ 216 (394)
T PRK05942 188 PREFFEEIVAFARKYEIMLVHDLCYAELA 216 (394)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccchhhc
Confidence 47899999999999999999999976554
No 318
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=34.07 E-value=1.6e+02 Score=27.34 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcCC--CeEEEeec
Q 045962 197 VQKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNTMP--HFTVAEKW 247 (423)
Q Consensus 197 v~~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~p--~~~~gE~~ 247 (423)
.+..+.+++++-. ++|+|..-+ |..-.+|.+-+.++++.... ...+.|.-
T Consensus 69 ~q~~~~~Yl~~~k-~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 69 SKGKFDEYLNECD-ELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred HhhhHHHHHHHHH-HcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEecccc
Confidence 4455666666655 599999999 66678899988888776653 44666653
No 319
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=33.99 E-value=73 Score=31.86 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=27.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.+. ..-|...+++++.+.||++|+-+|+|-+-.
T Consensus 185 ~v~-~~~G~~~~l~~i~~l~~~~~~~livDea~~ 217 (406)
T PRK13393 185 SVY-SMDGDIAPIAEICDVAEKHGAMTYLDEVHA 217 (406)
T ss_pred CCC-CCCCchhCHHHHHHHHHHcCCEEEEECCcc
Confidence 345 566888889999999999999999997743
No 320
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=33.86 E-value=1.3e+02 Score=26.19 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
+.-|...+..++++.|+++|++||.
T Consensus 83 S~sG~t~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 83 SGSGETSSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred cCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 5557788999999999999999864
No 321
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=33.85 E-value=48 Score=32.10 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 045962 194 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 226 (423)
Q Consensus 194 ~p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~ 226 (423)
++.-|+.+++.+..+++++|+||+-||-=....
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~ 128 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSS 128 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTS
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccc
Confidence 567889999999999999999999998765544
No 322
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=33.80 E-value=1.1e+02 Score=28.56 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=36.0
Q ss_pred HHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 045962 44 FLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGI 123 (423)
Q Consensus 44 ~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi 123 (423)
++.+.++++.++|++.|+|.+.- +. .+. +..-+.++.+++.+.+.+.||
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~----------~~------------~~~---------~~~~~~~~~~~l~~~~~~~gl 59 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGN----------PR------------SWK---------GVRLSEETAEKFKEALKENNI 59 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCC----------CC------------CCC---------CCCCCHHHHHHHHHHHHHcCC
Confidence 46678999999999999985544 11 111 111235668888888888999
Q ss_pred EEEE
Q 045962 124 KCLA 127 (423)
Q Consensus 124 ~Vil 127 (423)
+|.+
T Consensus 60 ~ls~ 63 (273)
T smart00518 60 DVSV 63 (273)
T ss_pred CEEE
Confidence 8654
No 323
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=33.69 E-value=24 Score=31.19 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=33.1
Q ss_pred hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 49 IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 49 L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
|..++++|++.|.+.+.. .. ... +. .++++++.+.+.++||+|..
T Consensus 1 l~~~~~~G~~~vE~~~~~----------~~--------------------~~~-~~---~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDD----------GQ--------------------PWD-EK---DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHH----------HS--------------------HHT-HH---HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCC----------Cc--------------------ccc-cc---hHHHHHHHHHHHHcCCeEEE
Confidence 467899999999988766 22 000 11 47799999999999999654
No 324
>PRK08445 hypothetical protein; Provisional
Probab=33.48 E-value=73 Score=31.41 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
|.--+.++..+-++.||+.||++..=+.+.|.
T Consensus 176 pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~ 207 (348)
T PRK08445 176 PKKLDSDRWLEVHRQAHLIGMKSTATMMFGTV 207 (348)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeeeEEEecCC
Confidence 44556777889999999999999999999986
No 325
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=33.39 E-value=43 Score=32.07 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
+.++++++++.||++|+.||+|-+....
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~~~~ 177 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAYAEL 177 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecchhhc
Confidence 4688999999999999999999987543
No 326
>PRK05968 hypothetical protein; Provisional
Probab=33.35 E-value=57 Score=32.59 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=27.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
.+. ...+...+++++++.||++|+.||+|-..
T Consensus 155 ~pt-~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 155 SPT-SWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred CCC-CCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 344 56678899999999999999999999864
No 327
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=33.06 E-value=43 Score=32.48 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+.||+|-++-...
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 171 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDEAFIDFT 171 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEECcccccC
Confidence 47899999999999999999999985443
No 328
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.04 E-value=2e+02 Score=26.91 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
+.+.|+.|.+.|++.||.++-|+-
T Consensus 64 G~~gl~~L~~~~~~~Gl~~~Tev~ 87 (250)
T PRK13397 64 GLQGIRYLHEVCQEFGLLSVSEIM 87 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeC
Confidence 368999999999999999998763
No 329
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=32.96 E-value=46 Score=33.43 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
+.++|+++++-|.++|+-||.|-++.+...+
T Consensus 181 ~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd 211 (393)
T COG0436 181 SKEELKAIVELAREHDIIIISDEIYEELVYD 211 (393)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhhcccC
Confidence 5899999999999999999999999998754
No 330
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=32.90 E-value=41 Score=33.21 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=29.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 98 ~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
..++ ...|+..+++++++.||++|..||+|-..-
T Consensus 153 ~~p~-~~~G~~~~l~~i~~la~~~~~~livDea~~ 186 (370)
T TIGR02539 153 THVD-GEYGNLPDAGKVAKVCREKGVPLLLNCAYT 186 (370)
T ss_pred ECCC-CCCccccCHHHHHHHHHHcCCeEEEECccc
Confidence 3466 778999999999999999999999998754
No 331
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=32.76 E-value=47 Score=32.46 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEeccc
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh 133 (423)
|.=.+.++..+.++.||+.||+|...+.+.|
T Consensus 175 ~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl 205 (340)
T TIGR03699 175 PKKISSEEWLEVMETAHKLGLPTTATMMFGH 205 (340)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccceeEeeC
Confidence 4445788899999999999999999999997
No 332
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=32.66 E-value=1.6e+02 Score=27.87 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=48.1
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
.+.+-+++-...+|+.|.+.+--.+.. +. . .|.||--.+ .+.|+-|.++++
T Consensus 56 Es~E~i~~~A~~vk~~Ga~~lRGgafK----------PR--------T-----SPYsFQGlg------e~gL~~l~~a~~ 106 (286)
T COG2876 56 ESEEQVRETAESVKAAGAKALRGGAFK----------PR--------T-----SPYSFQGLG------EEGLKLLKRAAD 106 (286)
T ss_pred CCHHHHHHHHHHHHHcchhhccCCcCC----------CC--------C-----CcccccccC------HHHHHHHHHHHH
Confidence 457788888999999999999888776 33 1 233333444 588999999999
Q ss_pred HcCCEEEEEEe
Q 045962 120 KKGIKCLADIV 130 (423)
Q Consensus 120 ~~Gi~VilD~V 130 (423)
+.|+-|+-.++
T Consensus 107 ~~Gl~vvtEvm 117 (286)
T COG2876 107 ETGLPVVTEVM 117 (286)
T ss_pred HcCCeeEEEec
Confidence 99999988764
No 333
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=32.37 E-value=48 Score=26.80 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
+.-|...+..+.++.|+++|++||.
T Consensus 51 S~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 51 SYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred ECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 6678889999999999999999874
No 334
>PRK13561 putative diguanylate cyclase; Provisional
Probab=32.31 E-value=73 Score=34.14 Aligned_cols=73 Identities=8% Similarity=0.047 Sum_probs=48.9
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCC------cccccCCCCCCCC-----CCH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGY------MPGRLYDLHASSY-----GSQ 108 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY------~~~d~~~id~~~~-----Gt~ 108 (423)
.+...+.+.+..|+++||.... =.++ . +.++-.| -+.|+-.|| ..| .+.
T Consensus 531 ~~~~~~~~~~~~l~~~G~~i~l----ddfG-------~--------g~ssl~~L~~l~~l~~d~lKiD-~s~i~~i~~~~ 590 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGVRVAL----DDFG-------M--------GYAGLRQLQHMKSLPIDVLKID-KMFVDGLPEDD 590 (651)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE----ECCC-------C--------CcccHHHHhhcCCCCCcEEEEC-HHHHhcCCCCH
Confidence 4577888889999999997553 1010 0 1111111 256777777 333 245
Q ss_pred HHHHHHHHHHHHcCCEEEEEEecc
Q 045962 109 NELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 109 ~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.-++.+++.||..||+||+.-|=+
T Consensus 591 ~~v~~i~~~a~~l~i~viAegVE~ 614 (651)
T PRK13561 591 SMVAAIIMLAQSLNLQVIAEGVET 614 (651)
T ss_pred HHHHHHHHHHHHCCCcEEEecCCC
Confidence 669999999999999999997755
No 335
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=32.21 E-value=41 Score=33.66 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=27.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.+. ...|+..+++++++.||++|+.||+|-+.-
T Consensus 154 ~p~-NPtg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 154 TPT-NPLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred CCC-CCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 344 556888999999999999999999998754
No 336
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=32.10 E-value=2.8e+02 Score=27.43 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcC
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNTM 238 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~ 238 (423)
+++.+.++...+ .|+|.+++ |++....++-..++++.+.
T Consensus 141 ~~l~~~~~~~~~-~g~~~i~l~DT~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 141 DFLIKVFKRAEE-AGADRINIADTVGVLTPQKMEELIKKLK 180 (363)
T ss_pred HHHHHHHHHHHh-CCCCEEEEeCCCCccCHHHHHHHHHHHh
Confidence 457777777775 99999999 8888888877777766543
No 337
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=31.86 E-value=38 Score=33.91 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=28.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 97 ~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
...+. ..-|...+++++++.||++|+.|++|-+
T Consensus 177 ~~~v~-~~tG~~~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 177 LSGVQ-YYTGQLFDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred Eeccc-cccceecCHHHHHHHHHHcCCEEEEEcc
Confidence 45566 7788999999999999999999999975
No 338
>PRK08960 hypothetical protein; Provisional
Probab=31.82 E-value=53 Score=32.59 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.||++|+.||+|-++.+..
T Consensus 183 ~~~~~~~l~~~~~~~~~~li~De~Y~~~~ 211 (387)
T PRK08960 183 SRDELAALSQALRARGGHLVVDEIYHGLT 211 (387)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 47999999999999999999999987653
No 339
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=31.76 E-value=57 Score=30.67 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
+.+++++|++.||+.||.+++|+-
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh 168 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVH 168 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeC
Confidence 357999999999999999999973
No 340
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=31.71 E-value=39 Score=28.24 Aligned_cols=32 Identities=25% Similarity=0.177 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 104 SYGSQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
.-|...+++++++.||++|+.+|+|-...-..
T Consensus 104 ~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~ 135 (170)
T cd01494 104 SGGVLVPLKEIRKIAKEYGILLLVDAASAGGA 135 (170)
T ss_pred CCCeEcCHHHHHHHHHHcCCEEEEeccccccc
Confidence 33445567999999999999999997766443
No 341
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=31.70 E-value=1.1e+02 Score=30.53 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
.+.+++|++-|+++|+-+|+|=|.-.++
T Consensus 203 ~~~l~~l~~l~~~~~~llI~DEv~tG~g 230 (406)
T PRK12381 203 KAFLQGLRELCDRHNALLIFDEVQTGVG 230 (406)
T ss_pred HHHHHHHHHHHHHcCCEEEEcchhhCCC
Confidence 6789999999999999999999975444
No 342
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=31.66 E-value=74 Score=31.59 Aligned_cols=26 Identities=8% Similarity=-0.006 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHcCCE-EEEEEecc
Q 045962 107 SQNELKSLIQAFNKKGIK-CLADIVIN 132 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~-VilD~V~n 132 (423)
+.++-.+-++.|++.||+ |-.++.++
T Consensus 199 ~~~~rl~~i~~a~~aG~~~v~~g~i~G 225 (366)
T TIGR02351 199 DFRYRLNTPERAAKAGMRKIGIGALLG 225 (366)
T ss_pred CHHHHHHHHHHHHHcCCCeeceeEEEe
Confidence 578888899999999998 88887776
No 343
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=31.55 E-value=1.7e+02 Score=28.19 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=39.0
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+.+.+.+.+..+++.|++.|=+.--. .. ... .+ ... ...=+.+.+++++++||+
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g----------~~--------~~~-----~~--~~~-~~~~~~e~l~~~~~~A~~ 171 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATG----------GV--------LSP-----GD--PPP-DTQFSEEELRAIVDEAHK 171 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccC----------Cc--------CCC-----CC--CCc-ccCcCHHHHHHHHHHHHH
Confidence 46678888988889999998543211 00 000 00 011 112247899999999999
Q ss_pred cCCEEEE
Q 045962 121 KGIKCLA 127 (423)
Q Consensus 121 ~Gi~Vil 127 (423)
+|+.|.+
T Consensus 172 ~g~~v~~ 178 (342)
T cd01299 172 AGLYVAA 178 (342)
T ss_pred cCCEEEE
Confidence 9998764
No 344
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=31.45 E-value=53 Score=32.25 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 045962 194 NPRVQKELSDWMNWLKTEIGFDGWRFDFV 222 (423)
Q Consensus 194 ~p~v~~~~~~~l~~w~~~~gvDGfR~D~a 222 (423)
+++.|+.+++.+..+++++|+||+-||-=
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDwE 116 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDWE 116 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeeccc
Confidence 68899999999988898999999999965
No 345
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=31.37 E-value=52 Score=33.49 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
++++++++.+-|+++||.||.|-.
T Consensus 171 s~~~l~~i~eia~~~gi~li~DaA 194 (431)
T cd00617 171 SMANLREVRELAHKYGIPVVLDAA 194 (431)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEch
Confidence 478999999999999999999998
No 346
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=31.35 E-value=42 Score=33.44 Aligned_cols=32 Identities=3% Similarity=0.089 Sum_probs=27.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
.+. ...|..-+++++++.||++|+.||+|-..
T Consensus 139 ~ps-nptg~v~dl~~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 139 SPT-NPLQKIVDIRKISEMAHAQNALVVVDNTM 170 (378)
T ss_pred CCC-CCCCeeecHHHHHHHHHHcCCEEEEECCC
Confidence 455 66788888999999999999999999874
No 347
>PLN02651 cysteine desulfurase
Probab=31.33 E-value=43 Score=32.90 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=30.9
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 94 PGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 94 ~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
..-...+. ..-|...+++++++.||++|+.+++|-+-
T Consensus 141 lv~v~~~~-n~tG~~~~l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 141 LVSVMAVN-NEIGVIQPVEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred EEEEECCC-CCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 33345566 77899999999999999999999999884
No 348
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=31.27 E-value=51 Score=33.44 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+.||.|-++.|..
T Consensus 208 ~~~~l~~i~~~a~~~~i~ii~De~Y~~~~ 236 (430)
T PLN00145 208 SYEHLAKIAETARKLGILVIADEVYDHLT 236 (430)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchhhc
Confidence 47899999999999999999999998875
No 349
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=31.08 E-value=1.3e+02 Score=28.57 Aligned_cols=27 Identities=7% Similarity=-0.071 Sum_probs=24.7
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
.+.+..++...+.+++|+++|-++|++
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPY 106 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 468899999999999999999998877
No 350
>PRK07324 transaminase; Validated
Probab=30.94 E-value=81 Score=31.15 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
+.++++++++.|+++|+.||.|-++.+.
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 6889999999999999999999997654
No 351
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.93 E-value=1.7e+02 Score=28.85 Aligned_cols=57 Identities=9% Similarity=-0.130 Sum_probs=38.3
Q ss_pred cHHHHHhhhhHHHHcC-CcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAG-ITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lG-i~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
+.+.+.+-.+.|++++ +..|.|.|.. +. .-.+|... +.++++++.+.+.
T Consensus 266 s~e~a~~La~~l~~l~~~~~VnLIPyn----------p~--------------~~~~~~~p------s~e~i~~f~~~L~ 315 (348)
T PRK14467 266 SPEDALRLAQLIGKNKKKFKVNLIPFN----------PD--------------PELPYERP------ELERVYKFQKILW 315 (348)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEecCC----------CC--------------CCCCCCCC------CHHHHHHHHHHHH
Confidence 4556666677778774 5678888877 22 11122222 2678888888999
Q ss_pred HcCCEEEE
Q 045962 120 KKGIKCLA 127 (423)
Q Consensus 120 ~~Gi~Vil 127 (423)
++|+.|.+
T Consensus 316 ~~gi~v~v 323 (348)
T PRK14467 316 DNGISTFV 323 (348)
T ss_pred HCCCcEEE
Confidence 99999854
No 352
>PRK07179 hypothetical protein; Provisional
Probab=30.86 E-value=1e+02 Score=30.76 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
..-|+..+++++++-|+++|+.||+|-+.
T Consensus 192 n~tG~i~pl~~I~~l~~~~~~~livDea~ 220 (407)
T PRK07179 192 STTGTIAPLADIVDIAEEFGCVLVVDESH 220 (407)
T ss_pred CCCCccccHHHHHHHHHHcCCEEEEECcc
Confidence 44466666889999999999999999884
No 353
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.83 E-value=42 Score=34.20 Aligned_cols=34 Identities=9% Similarity=0.139 Sum_probs=28.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 97 ~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
...+. ...|...+++++++.||++|+.||+|-..
T Consensus 161 ie~~s-Np~G~v~Dl~~I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 161 AETIS-NPQIDVLDIPGVAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred EECCC-CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 34555 66799999999999999999999999864
No 354
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.78 E-value=1.5e+02 Score=28.08 Aligned_cols=27 Identities=11% Similarity=-0.129 Sum_probs=24.6
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
.+.+..++...+.+++|+++|-++|++
T Consensus 75 ~~~~~ai~~a~~a~~~Gad~v~v~~P~ 101 (279)
T cd00953 75 LNLEESIELARAAKSFGIYAIASLPPY 101 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 468999999999999999999998876
No 355
>PLN02822 serine palmitoyltransferase
Probab=30.78 E-value=95 Score=32.08 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
+..|..-.++++++-|+++|+.+|+|-+..+-
T Consensus 256 ~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~g 287 (481)
T PLN02822 256 QNSGQIAPLDEIVRLKEKYRFRVLLDESNSFG 287 (481)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCcccc
Confidence 44566666999999999999999999998743
No 356
>PLN00175 aminotransferase family protein; Provisional
Probab=30.66 E-value=57 Score=32.84 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 205 s~~~l~~l~~~a~~~~~~ii~De~Y~~l~ 233 (413)
T PLN00175 205 TREELELIASLCKENDVLAFTDEVYDKLA 233 (413)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccCccc
Confidence 47899999999999999999999998764
No 357
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=30.65 E-value=3e+02 Score=27.24 Aligned_cols=38 Identities=24% Similarity=0.209 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
+++.+.++...+ .|+|.+++ |++....+.-..++++.+
T Consensus 142 ~~l~~~~~~~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 142 DFLVELAEVAAE-AGADRFRFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred HHHHHHHHHHHH-cCcCEEEEcccCCCCCHHHHHHHHHHH
Confidence 467777777765 89999998 888888887776665544
No 358
>PLN02808 alpha-galactosidase
Probab=30.40 E-value=95 Score=31.11 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=35.5
Q ss_pred cCCCceEEecCCCC--CchhHHHHH--HHHHHHHhcCcccccceEEEeecCCEEEEEE----CCEEEEEECCCC
Q 045962 338 THPGTPSIFYDHLF--DWDLKKEIG--KLAAIRTKNGINTTSRVNILASQSDLYVAAI----DDKIITKIGPKM 403 (423)
Q Consensus 338 ~~pG~P~iy~G~~~--~w~~~~~~~--~L~~lR~~~~~l~~g~~~~~~~~~~~~~~~r----~~~~lv~in~~~ 403 (423)
++-+-|+|.-+|.- +=..++.++ .+|+|-+. |.-..| +.+..++++-+|.+ +...|+++|.+.
T Consensus 261 am~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD-~lG~~~--~~v~~~~~~~vW~k~L~~g~~aVal~N~~~ 331 (386)
T PLN02808 261 ALAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQD-KLGVQG--KKVKKDGDLEVWAGPLSKKRVAVVLWNRGS 331 (386)
T ss_pred HHHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCC-ccccCc--EEEEecCCeEEEEEECCCCCEEEEEEECCC
Confidence 34456688777632 223455553 46666554 222333 33445677888876 456777788653
No 359
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=30.39 E-value=87 Score=32.09 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=41.5
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
.+.-..+.++.+|+||+++.-++--+ .- +.+ .| .--.+| --+.+-.++||+++.+
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRfsi~W----------~R-i~P-------~g----~~g~~n---~~~~~~Y~~~i~~l~~ 110 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRFSISW----------SR-IFP-------DG----FEGKVN---EEGLDFYRDLIDELLE 110 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEE--H----------HH-HST-------TS----SSSSS----HHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHhhccceeeeecch----------hh-eee-------cc----cccccC---HhHhhhhHHHHHHHHh
Confidence 46778888999999999998876544 11 010 01 001122 1135568999999999
Q ss_pred cCCEEEEEEecccC
Q 045962 121 KGIKCLADIVINHR 134 (423)
Q Consensus 121 ~Gi~VilD~V~nh~ 134 (423)
+||+.|+.+ .|-
T Consensus 111 ~gi~P~vtL--~H~ 122 (455)
T PF00232_consen 111 NGIEPIVTL--YHF 122 (455)
T ss_dssp TT-EEEEEE--ESS
T ss_pred hccceeeee--eec
Confidence 999999876 454
No 360
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=30.38 E-value=53 Score=30.17 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 102 ASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 102 ~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
|.--|+.+-.++||++||..|+.-++--.+
T Consensus 237 PTL~GSl~r~~eli~qAh~lGl~AVISSSi 266 (321)
T COG1441 237 PTLTGSLQRVRELVQQAHALGLTAVISSSI 266 (321)
T ss_pred ccchhhHHHHHHHHHHHHhcCceeEeechh
Confidence 556689999999999999999988765433
No 361
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=30.37 E-value=1.7e+02 Score=28.24 Aligned_cols=62 Identities=19% Similarity=0.130 Sum_probs=46.0
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
=|.+.+.+.++.|+++|++.|-+.+.+ .. +-..+.+ .+|=+.++|..+-+.|-
T Consensus 219 ETeee~~etl~~Lrelg~d~v~igqYl----------~p---------~~~~~~v--------~~~~~p~~f~~~~~~a~ 271 (302)
T TIGR00510 219 ETNEEIKQTLKDLRDHGVTMVTLGQYL----------RP---------SRRHLPV--------KRYVSPEEFDYYRSVAL 271 (302)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeccc----------CC---------CCCCCcc--------ccCCCHHHHHHHHHHHH
Confidence 478899999999999999999877766 22 2222333 34556788999999999
Q ss_pred HcCCEEEEE
Q 045962 120 KKGIKCLAD 128 (423)
Q Consensus 120 ~~Gi~VilD 128 (423)
+.|.+-|.-
T Consensus 272 ~~gf~~v~~ 280 (302)
T TIGR00510 272 EMGFLHAAC 280 (302)
T ss_pred HcCChheEe
Confidence 999876543
No 362
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=30.31 E-value=1.6e+02 Score=30.03 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
+.+++++|++-|+++|+.||.|-++-..
T Consensus 218 s~e~l~~l~~~~~~~~i~lI~DEiYa~~ 245 (447)
T PLN02607 218 QRSVLEDILDFVVRKNIHLVSDEIYSGS 245 (447)
T ss_pred CHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 3789999999999999999999998654
No 363
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=30.19 E-value=50 Score=30.98 Aligned_cols=88 Identities=7% Similarity=-0.014 Sum_probs=52.3
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCc-ccccc--cc-ccccCCCCCCC------CcccccCCCCCCCCCCHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPR-LFFHS--II-HQAYSHASLAG------YMPGRLYDLHASSYGSQN 109 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~-~~~~~--~~-~~~~~~~~~~G------Y~~~d~~~id~~~~Gt~~ 109 (423)
-+.+..++.+..|++.|+..|.- |+...+-+.. ...+. +. -.+..-.+.+. -...|...+++.+.|+..
T Consensus 140 ~~~~~a~~~~~~l~~~~i~~iEe-P~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 218 (265)
T cd03315 140 WTPKQAIRALRALEDLGLDYVEQ-PLPADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLT 218 (265)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEC-CCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHH
Confidence 46788888899999999999885 3321000000 00000 00 00000000011 224566677777789999
Q ss_pred HHHHHHHHHHHcCCEEEEE
Q 045962 110 ELKSLIQAFNKKGIKCLAD 128 (423)
Q Consensus 110 ~l~~lv~~aH~~Gi~VilD 128 (423)
+.+++++.|+++|+++++=
T Consensus 219 ~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 219 KAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred HHHHHHHHHHHcCCcEEec
Confidence 9999999999999999873
No 364
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=30.17 E-value=58 Score=31.50 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
..+.+.+|++.|+++|.+|++|.-
T Consensus 144 ~~d~y~~li~~~~~~g~~vilD~S 167 (310)
T COG1105 144 PPDAYAELIRILRQQGAKVILDTS 167 (310)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECC
Confidence 478899999999999999999953
No 365
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=29.96 E-value=44 Score=33.25 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=28.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.+. ...|...+++++++.||++|+.||+|-+.-
T Consensus 147 ~p~-np~g~~~dl~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 147 TPS-NPLGELVDIAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred CCC-CCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 344 567888889999999999999999999864
No 366
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=29.78 E-value=47 Score=33.47 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=28.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.+. ...|...+++++++.||++|+.||+|-+.-
T Consensus 153 ~P~-NPtG~v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 153 TPS-NPLLRITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred CCC-CCCCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence 444 557778889999999999999999999874
No 367
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=29.69 E-value=1.5e+02 Score=26.86 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=48.1
Q ss_pred HHHHhh--hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCC-CcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 43 NFLKKR--IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAG-YMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 43 ~~~~~~--L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~G-Y~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
.|++.+ .-.|..+|.++..+.|-= -+ ..+-| ..+.|-.-.= +.-|..+++..++..|+
T Consensus 50 SG~Igkk~Aa~L~s~G~~a~fv~p~e----------a~--------hgdlg~i~~~Dvviai-S~SGeT~el~~~~~~aK 110 (202)
T COG0794 50 SGLIGKKFAARLASTGTPAFFVGPAE----------AL--------HGDLGMITPGDVVIAI-SGSGETKELLNLAPKAK 110 (202)
T ss_pred hHHHHHHHHHHHHccCCceEEecCch----------hc--------cCCccCCCCCCEEEEE-eCCCcHHHHHHHHHHHH
Confidence 344444 568999999999998853 22 12222 4555555555 77788999999999999
Q ss_pred HcCCEEEE
Q 045962 120 KKGIKCLA 127 (423)
Q Consensus 120 ~~Gi~Vil 127 (423)
+.|++||.
T Consensus 111 ~~g~~lia 118 (202)
T COG0794 111 RLGAKLIA 118 (202)
T ss_pred HcCCcEEE
Confidence 99999985
No 368
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=29.68 E-value=80 Score=33.06 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
...|..++++++.+.|+++|+.+.+|-+..
T Consensus 276 t~tGaiDpl~eIa~i~~~~g~~lHVDaA~g 305 (522)
T TIGR03799 276 TETGNIDPLDEMADIAQELGCHFHVDAAWG 305 (522)
T ss_pred cCCCCcCCHHHHHHHHHHcCCeEEEEchhh
Confidence 567888889999999999999999998865
No 369
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=29.46 E-value=1.3e+02 Score=30.25 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
.|+|..|++=|.+++|.||.|-++--+
T Consensus 245 ~e~L~~ll~Fa~~kniHvI~DEIya~s 271 (471)
T KOG0256|consen 245 PEELISLLNFASRKNIHVISDEIYAGS 271 (471)
T ss_pred HHHHHHHHHHHhhcceEEEeehhhccc
Confidence 799999999999999999999998644
No 370
>PRK14012 cysteine desulfurase; Provisional
Probab=29.40 E-value=64 Score=32.21 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=29.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 97 ~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
...+. ...|...+++++.+.||++|+.|++|-+-
T Consensus 150 ~~~~~-n~tG~~~~~~~I~~la~~~g~~vivD~a~ 183 (404)
T PRK14012 150 IMHVN-NEIGVIQDIAAIGEICRERGIIFHVDAAQ 183 (404)
T ss_pred EECcC-CCccchhhHHHHHHHHHHcCCEEEEEcch
Confidence 44555 66899999999999999999999999884
No 371
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=29.40 E-value=80 Score=26.35 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHH----HHHHHHH
Q 045962 42 YNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNE----LKSLIQA 117 (423)
Q Consensus 42 ~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~----l~~lv~~ 117 (423)
+.++.--|+-++++|++.+.++|+. .. .-.||.-++ .+. .+++-+.
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~Pv----------Ng--------------~wydytG~~------~~~r~~~y~kI~~~ 84 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPV----------NG--------------KWYDYTGLS------KEMRQEYYKKIKYQ 84 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--------------H--------------HHHHHTT--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEEecCC----------cH--------------HHHHHhCCC------HHHHHHHHHHHHHH
Q ss_pred HHHcCCEEEEEE
Q 045962 118 FNKKGIKCLADI 129 (423)
Q Consensus 118 aH~~Gi~VilD~ 129 (423)
|.++|+ =|+|+
T Consensus 85 ~~~~gf-~v~D~ 95 (130)
T PF04914_consen 85 LKSQGF-NVADF 95 (130)
T ss_dssp HHTTT---EEE-
T ss_pred HHHCCC-EEEec
No 372
>PRK07671 cystathionine beta-lyase; Provisional
Probab=29.20 E-value=51 Score=32.80 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=27.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 100 LHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 100 id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
+. ...|...+++++++.||++|+.||+|-++.
T Consensus 143 P~-NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 143 PT-NPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred CC-CCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 44 556888889999999999999999998864
No 373
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=29.18 E-value=63 Score=32.30 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=27.7
Q ss_pred CCCCC---HHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 103 SSYGS---QNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 103 ~~~Gt---~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
...|+ .++++++++.|+++|+.||.|-++.+..
T Consensus 180 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (403)
T TIGR01265 180 NPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMV 215 (403)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 44553 5899999999999999999999987664
No 374
>PRK15029 arginine decarboxylase; Provisional
Probab=29.14 E-value=41 Score=36.83 Aligned_cols=29 Identities=14% Similarity=0.011 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 102 ASSYGSQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 102 ~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
|.-+|...+++.+++.||++|+.|++|-.
T Consensus 321 PTY~Gv~~di~~I~~~~h~~~~~llvDEA 349 (755)
T PRK15029 321 CTYDGVCYNAKEAQDLLEKTSDRLHFDEA 349 (755)
T ss_pred CCCcceeeCHHHHHHHHHhcCCeEEEECc
Confidence 56678889999999999999999999943
No 375
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=29.07 E-value=45 Score=23.00 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=20.8
Q ss_pred CcchhhHHHHHHhhCCCCCCC----------------CCceeeeeeecc
Q 045962 1 MSPLCFLCFLLLSVFPPFTSP----------------SPTILFQGFNWE 33 (423)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~~F~~d 33 (423)
||+|.+|..++|+.+-+-|++ ..+-+..||.||
T Consensus 1 MRTL~LLaAlLLlAlqaQAepl~~~~de~~~qeqpg~edQdv~ISf~~~ 49 (52)
T PF00879_consen 1 MRTLALLAALLLLALQAQAEPLQERADEAPAQEQPGAEDQDVSISFAGD 49 (52)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccccccchhhccCccCCcEEEEecCC
Confidence 788887776555555444432 136678888865
No 376
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=29.03 E-value=1.5e+02 Score=28.07 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=24.6
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
.+.+..++...+.+++|+++|.++|++
T Consensus 79 ~~~~~~~~~a~~a~~~G~d~v~~~~P~ 105 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAALVVTPY 105 (284)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 468899999999999999999999877
No 377
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=28.99 E-value=53 Score=31.73 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=30.7
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 045962 93 MPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLAD 128 (423)
Q Consensus 93 ~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD 128 (423)
...|...+++.+.|+..+.+++++.|+++||++++-
T Consensus 228 ~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~ 263 (307)
T TIGR01927 228 GWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFS 263 (307)
T ss_pred CCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 345667788777899999999999999999999874
No 378
>PRK06108 aspartate aminotransferase; Provisional
Probab=28.89 E-value=68 Score=31.53 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+-||+|-++.+..
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~De~y~~~~ 204 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVADEVYERLY 204 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhhhhhc
Confidence 68999999999999999999999887664
No 379
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=28.86 E-value=68 Score=29.57 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.+.++++|++||++|++|.+--+.+
T Consensus 184 ~~~l~~~v~~a~~~Gl~vr~Wtv~~ 208 (228)
T cd08577 184 KEKLKSIIDKAHARGKKVRFWGTPD 208 (228)
T ss_pred HHHHHHHHHHHHHCCCEEEEEccCC
Confidence 5779999999999999999988876
No 380
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.84 E-value=22 Score=28.90 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.0
Q ss_pred CcchhhHHHHHHhhCCCCC
Q 045962 1 MSPLCFLCFLLLSVFPPFT 19 (423)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (423)
||+++++++++|.+++++|
T Consensus 1 MKk~~ll~~~ll~s~~a~A 19 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAFA 19 (114)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 8999999977777777787
No 381
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=28.79 E-value=5.5e+02 Score=24.97 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=43.6
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+.+.+.+.+..+.++|+++|-|-|+-+. +. ..+...|++. | -+.+-|+++++
T Consensus 57 s~d~l~~~v~~~~~~Gi~av~LFgv~~~--------Kd-------~~gs~A~~~~----------g---~v~rair~iK~ 108 (323)
T PRK09283 57 SIDLLVKEAEEAVELGIPAVALFGVPEL--------KD-------EDGSEAYNPD----------G---LVQRAIRAIKK 108 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCcCCC--------CC-------cccccccCCC----------C---HHHHHHHHHHH
Confidence 4788999999999999999999998522 11 1222223322 1 13333334433
Q ss_pred --cCCEEEEEEecccCC
Q 045962 121 --KGIKCLADIVINHRT 135 (423)
Q Consensus 121 --~Gi~VilD~V~nh~~ 135 (423)
-.|-||.|+.+....
T Consensus 109 ~~p~l~vi~DVcLc~YT 125 (323)
T PRK09283 109 AFPELGVITDVCLDEYT 125 (323)
T ss_pred hCCCcEEEEeeeccCCC
Confidence 479999999997554
No 382
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=28.73 E-value=46 Score=32.64 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
...|..++++++++.||++|+.||+|-+.
T Consensus 179 ~~~G~~~~l~~i~~ia~~~~~~li~De~~ 207 (385)
T PRK05958 179 SMDGDLAPLAELVALARRHGAWLLVDEAH 207 (385)
T ss_pred cCCCCcCCHHHHHHHHHHhCCEEEEECcc
Confidence 44567788999999999999999999996
No 383
>PLN02187 rooty/superroot1
Probab=28.70 E-value=62 Score=33.19 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 222 s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~ 250 (462)
T PLN02187 222 SHDHLKKVAETARKLGIMVISDEVYDRTI 250 (462)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 47999999999999999999999998764
No 384
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.63 E-value=89 Score=29.22 Aligned_cols=60 Identities=12% Similarity=0.197 Sum_probs=40.1
Q ss_pred HHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCC-CHHHHHHHHHHHHH
Q 045962 42 YNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYG-SQNELKSLIQAFNK 120 (423)
Q Consensus 42 ~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~G-t~~~l~~lv~~aH~ 120 (423)
++.+...++..+.+|+..|-+.|.. .. |... -+ ..+- ..+.+++|++.|.+
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~----------~~-------------~~~~----~~-~~~~~~~~~l~~l~~~a~~ 140 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAH----------AG-------------YLTP----PN-VIWGRLAENLSELCEYAEN 140 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCC----------CC-------------CCCC----HH-HHHHHHHHHHHHHHHHHHH
Confidence 3455566788999999999887754 22 1110 11 1111 13569999999999
Q ss_pred cCCEEEEEE
Q 045962 121 KGIKCLADI 129 (423)
Q Consensus 121 ~Gi~VilD~ 129 (423)
+||++.+.-
T Consensus 141 ~gv~l~iE~ 149 (275)
T PRK09856 141 IGMDLILEP 149 (275)
T ss_pred cCCEEEEec
Confidence 999999883
No 385
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=28.60 E-value=2.1e+02 Score=28.36 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=40.1
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+.+.+.+....||+.|+..+.=. .+ ++ +.+.++ |..+. .+.++.|.+.|++
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~-~~----------kp-------Rtsp~~-----f~g~~------~e~l~~L~~~~~~ 180 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGG-AF----------KP-------RTSPYD-----FQGLG------VEGLKILKQVADE 180 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEcc-cc----------CC-------CCCCcc-----ccCCC------HHHHHHHHHHHHH
Confidence 35566777788999999766522 22 22 123333 22222 5899999999999
Q ss_pred cCCEEEEEE
Q 045962 121 KGIKCLADI 129 (423)
Q Consensus 121 ~Gi~VilD~ 129 (423)
.||.++-++
T Consensus 181 ~Gl~~~t~v 189 (360)
T PRK12595 181 YGLAVISEI 189 (360)
T ss_pred cCCCEEEee
Confidence 999999865
No 386
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=28.58 E-value=51 Score=32.60 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
+..|...+++++++.||++|+.||+|-+.
T Consensus 181 ~~tG~~~~l~~i~~la~~~~~~li~De~~ 209 (393)
T TIGR01822 181 SMDGVIAPLDEICDLADKYDALVMVDECH 209 (393)
T ss_pred cCCCCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 45577778999999999999999999995
No 387
>PRK07568 aspartate aminotransferase; Provisional
Probab=28.55 E-value=60 Score=32.18 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.||++|+.||+|-++....
T Consensus 180 ~~~~~~~i~~~~~~~~~~ii~De~y~~~~ 208 (397)
T PRK07568 180 TKEELEMLAEIAKKHDLFLISDEVYREFV 208 (397)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccchhcc
Confidence 47899999999999999999999987553
No 388
>KOG2730 consensus Methylase [General function prediction only]
Probab=28.49 E-value=59 Score=29.85 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=24.5
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
.||+.++.+.|.--|+. ++.|.++|++
T Consensus 149 ~GD~ld~~~~lq~~K~~-~~~vf~sppw 175 (263)
T KOG2730|consen 149 CGDFLDLASKLKADKIK-YDCVFLSPPW 175 (263)
T ss_pred echHHHHHHHHhhhhhe-eeeeecCCCC
Confidence 48999999999988888 9999999988
No 389
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=28.48 E-value=1.6e+02 Score=28.66 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCE-EEEEEec
Q 045962 103 SSYGSQNELKSLIQAFNKKGIK-CLADIVI 131 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~-VilD~V~ 131 (423)
..-|+.+...+-+++|.+.|+. |-+-+|+
T Consensus 133 ~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 133 RRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 3346789999999999999997 7777665
No 390
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=28.40 E-value=60 Score=32.01 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEe
Q 045962 108 QNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
.+++++.|+.||++|.++++=+-
T Consensus 48 ~~~l~e~i~~ah~~gkk~~V~~N 70 (347)
T COG0826 48 VEDLAEAVELAHSAGKKVYVAVN 70 (347)
T ss_pred HHHHHHHHHHHHHcCCeEEEEec
Confidence 46799999999999999986443
No 391
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=28.39 E-value=1.6e+02 Score=28.29 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=46.0
Q ss_pred CcHHHHHhhhhHHHHcCCc-EEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGIT-HVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~-~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
-+.++=++.|..|++.|+. +|.+.||. +. .+ .+++.+++++|
T Consensus 166 psp~~Ri~al~~l~eaGi~~~v~v~PIi----------P~--------------------------~~-d~e~e~~l~~~ 208 (297)
T COG1533 166 PSPEERLEALKELSEAGIPVGLFVAPII----------PG--------------------------LN-DEELERILEAA 208 (297)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEEeccc----------CC--------------------------CC-hHHHHHHHHHH
Confidence 3456667778899999996 57788999 33 22 28899999999
Q ss_pred HHcCCEEEEEEecccCC
Q 045962 119 NKKGIKCLADIVINHRT 135 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~~ 135 (423)
.+.|...+.+..+.-..
T Consensus 209 ~~ag~~~v~~~~l~~~~ 225 (297)
T COG1533 209 AEAGARVVVYGTLRLRL 225 (297)
T ss_pred HHcCCCeeEeeeeeccH
Confidence 99999999988876443
No 392
>PTZ00376 aspartate aminotransferase; Provisional
Probab=28.38 E-value=65 Score=32.21 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRTA 136 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~~ 136 (423)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 194 s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred CHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 589999999999999999999999987764
No 393
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=28.35 E-value=99 Score=30.93 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=26.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.+. ..-|+.-+++++++.||++|+.||+|-+..
T Consensus 186 ~~~-n~tG~~~~l~~i~~l~~~~~~~livDea~~ 218 (410)
T PRK13392 186 SVY-SMDGDIAPIEAICDLADRYNALTYVDEVHA 218 (410)
T ss_pred CCC-CCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 444 555777779999999999999999998765
No 394
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=28.12 E-value=91 Score=30.65 Aligned_cols=20 Identities=20% Similarity=0.482 Sum_probs=15.1
Q ss_pred HHHHHHHcCCCceEEec-CCC
Q 045962 331 LGYAYILTHPGTPSIFY-DHL 350 (423)
Q Consensus 331 ~a~a~~~~~pG~P~iy~-G~~ 350 (423)
..|-++...+|||.+|| |+|
T Consensus 75 r~YKlL~g~~GIP~vYYFGqe 95 (449)
T KOG1165|consen 75 RTYKLLGGTEGIPQVYYFGQE 95 (449)
T ss_pred HHHHHHcCCCCCCceeeeccc
Confidence 45666778899999988 553
No 395
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.06 E-value=5.1e+02 Score=24.28 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=39.6
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
.++..+...++||++-|..-|.|.= ....+|....-+.+| ++.+..--+
T Consensus 133 ~t~~e~~~A~e~i~~~Gn~~i~L~e----------------------Rg~~~Y~~~~~n~~d---------l~ai~~lk~ 181 (250)
T PRK13397 133 ATIEEYLGALSYLQDTGKSNIILCE----------------------RGVRGYDVETRNMLD---------IMAVPIIQQ 181 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEc----------------------cccCCCCCccccccC---------HHHHHHHHH
Confidence 5788888889999999886665432 112345432222455 444444444
Q ss_pred HcCCEEEEEEecccCCC
Q 045962 120 KKGIKCLADIVINHRTA 136 (423)
Q Consensus 120 ~~Gi~VilD~V~nh~~~ 136 (423)
+-++-||+|.- |+..
T Consensus 182 ~~~lPVivd~S--Hs~G 196 (250)
T PRK13397 182 KTDLPIIVDVS--HSTG 196 (250)
T ss_pred HhCCCeEECCC--CCCc
Confidence 46788888877 7653
No 396
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=27.78 E-value=3.7e+02 Score=26.76 Aligned_cols=38 Identities=24% Similarity=0.188 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 199 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 199 ~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
+++.+.++...+ .|+|.+++ |++....+.-..++++.+
T Consensus 145 ~~l~~~~~~~~~-~Ga~~I~l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 145 DFLIEFAKAAEE-AGADRVRFCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred HHHHHHHHHHHh-CCCCEEEEeccCCCCCHHHHHHHHHHH
Confidence 467777777775 99999999 888888877666654433
No 397
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=27.77 E-value=67 Score=33.15 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=24.2
Q ss_pred CCCCCH-HHHHHHHHHHHHcCCEEEEEEe
Q 045962 103 SSYGSQ-NELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 103 ~~~Gt~-~~l~~lv~~aH~~Gi~VilD~V 130 (423)
...|.. ++++++++.||++|.-|++|-+
T Consensus 218 n~tG~~~~dl~eI~~~a~~~gal~iVD~a 246 (481)
T PRK04366 218 NTLGLFERNILEIAEIVHEAGGLLYYDGA 246 (481)
T ss_pred CCccccchHHHHHHHHHHHcCCEEEEEec
Confidence 446776 5899999999999999999987
No 398
>PRK07777 aminotransferase; Validated
Probab=27.76 E-value=65 Score=31.89 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.+++++|++.|+++|+.||+|-+..+..
T Consensus 177 ~~~~~~~l~~~~~~~~~~li~De~y~~~~ 205 (387)
T PRK07777 177 TAAELAAIAELAVEHDLLVITDEVYEHLV 205 (387)
T ss_pred CHHHHHHHHHHHHhcCcEEEEeccchhcc
Confidence 46899999999999999999999987664
No 399
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=27.64 E-value=50 Score=32.62 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 104 SYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 104 ~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
..|+..+++++++.||++|+.||+|-+-.
T Consensus 161 ~~g~~~~~~~i~~~a~~~gi~vivD~a~~ 189 (363)
T TIGR01437 161 VQKSMLSVEDAAQVAQEHNLPLIVDAAAE 189 (363)
T ss_pred CcCCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence 35666778899999999999999999753
No 400
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=27.64 E-value=53 Score=32.43 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
+..|..++++++++.|+++|+-||.|-+..
T Consensus 185 ~~~G~~~~~~~l~~la~~~~~~li~De~~~ 214 (397)
T PRK06939 185 SMDGDIAPLPEICDLADKYDALVMVDDSHA 214 (397)
T ss_pred CCCCCcCCHHHHHHHHHHhCCEEEEECccc
Confidence 455777889999999999999999999974
No 401
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.57 E-value=1.5e+02 Score=29.14 Aligned_cols=85 Identities=12% Similarity=-0.035 Sum_probs=50.8
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccc-cCCCCCCC---------CcccccCCCCCCCCCCHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQA-YSHASLAG---------YMPGRLYDLHASSYGSQNE 110 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~-~~~~~~~G---------Y~~~d~~~id~~~~Gt~~~ 110 (423)
+.+..++.+..|.++|+..|+= |+...+.+....-....... -.+.+-++ -...|...+|+.+.|+..+
T Consensus 198 ~~~~A~~~~~~l~~~~i~~iEe-P~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~ 276 (355)
T cd03321 198 TVPEAIERGQALDQEGLTWIEE-PTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTG 276 (355)
T ss_pred CHHHHHHHHHHHHcCCCCEEEC-CCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHH
Confidence 4678888888999999988884 44311100000000000000 00011111 2346677778777899999
Q ss_pred HHHHHHHHHHcCCEEE
Q 045962 111 LKSLIQAFNKKGIKCL 126 (423)
Q Consensus 111 l~~lv~~aH~~Gi~Vi 126 (423)
.+++++.|+++|++++
T Consensus 277 ~~~ia~~A~~~gi~~~ 292 (355)
T cd03321 277 WLRASALAEQAGIPMS 292 (355)
T ss_pred HHHHHHHHHHcCCeec
Confidence 9999999999999975
No 402
>PLN02591 tryptophan synthase
Probab=27.56 E-value=2e+02 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
.|+...++++|+++||..|+=+.++..
T Consensus 117 ~ee~~~~~~~~~~~gl~~I~lv~Ptt~ 143 (250)
T PLN02591 117 LEETEALRAEAAKNGIELVLLTTPTTP 143 (250)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 588999999999999999995556643
No 403
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=27.51 E-value=67 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
+.-|..++..+.++.|+++|++||.
T Consensus 55 S~SG~t~~~~~~~~~a~~~g~~vi~ 79 (120)
T cd05710 55 SHSGNTKETVAAAKFAKEKGATVIG 79 (120)
T ss_pred eCCCCChHHHHHHHHHHHcCCeEEE
Confidence 6668889999999999999999887
No 404
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=27.47 E-value=95 Score=26.98 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=15.9
Q ss_pred HHHhhhhHHHHcCCcEEEcC
Q 045962 44 FLKKRIPDIASAGITHVWLS 63 (423)
Q Consensus 44 ~~~~~L~ylk~lGi~~I~l~ 63 (423)
.+.+.+..|++.||++|.-.
T Consensus 28 ~~~~~l~~L~~~gI~~Iv~l 47 (166)
T PTZ00242 28 NLPLYIKELQRYNVTHLVRV 47 (166)
T ss_pred cHHHHHHHHHhCCCeEEEec
Confidence 34466899999999999843
No 405
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=27.45 E-value=54 Score=32.98 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=28.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 98 ~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
..+. ...|..-+++++++.||++|+.||+|-+.-
T Consensus 162 esp~-Nptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 162 ETPS-NPMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred ECCC-CCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 3455 667888889999999999999999999864
No 406
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.43 E-value=60 Score=31.89 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=28.5
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 95 GRLYDLHASSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 95 ~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
.|...+++.+.|+..+.+++++.|+++|+.+++
T Consensus 252 ~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~ 284 (354)
T cd03317 252 CKIINIKPGRVGGLTEALKIHDLCQEHGIPVWC 284 (354)
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHcCCcEEe
Confidence 466777767789999999999999999999864
No 407
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=27.26 E-value=1.6e+02 Score=27.28 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccc
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh 133 (423)
.|++.++++.|+++||+.++=+.++-
T Consensus 115 ~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 115 PEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 37899999999999999998777663
No 408
>PRK15108 biotin synthase; Provisional
Probab=27.24 E-value=1.9e+02 Score=28.41 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEeccc
Q 045962 106 GSQNELKSLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 106 Gt~~~l~~lv~~aH~~Gi~VilD~V~nh 133 (423)
++.++..+.++.||+.|++|..=+.+.|
T Consensus 168 ~~~~~rl~~i~~a~~~G~~v~sg~i~Gl 195 (345)
T PRK15108 168 RTYQERLDTLEKVRDAGIKVCSGGIVGL 195 (345)
T ss_pred CCHHHHHHHHHHHHHcCCceeeEEEEeC
Confidence 4789999999999999999999999997
No 409
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=27.23 E-value=2.6e+02 Score=27.06 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=43.9
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+.+.+.+.+..+.++|+++|-|-|+-+. +. ..++..|++. | -+++-|.++++
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~--------Kd-------~~gs~A~~~~----------g---~v~~air~iK~ 100 (314)
T cd00384 49 SVDSLVEEAEELADLGIRAVILFGIPEH--------KD-------EIGSEAYDPD----------G---IVQRAIRAIKE 100 (314)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCC--------CC-------CCcccccCCC----------C---hHHHHHHHHHH
Confidence 4788999999999999999999998632 11 1222223322 1 13334444443
Q ss_pred c--CCEEEEEEecccCC
Q 045962 121 K--GIKCLADIVINHRT 135 (423)
Q Consensus 121 ~--Gi~VilD~V~nh~~ 135 (423)
. .|-||.|+.+....
T Consensus 101 ~~p~l~vi~DvcLc~YT 117 (314)
T cd00384 101 AVPELVVITDVCLCEYT 117 (314)
T ss_pred hCCCcEEEEeeeccCCC
Confidence 3 79999999997554
No 410
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=27.21 E-value=67 Score=32.94 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEe
Q 045962 108 QNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
+++++++.+-|+++|++||+|-.
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~DaA 219 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDAT 219 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEECc
Confidence 78999999999999999999964
No 411
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=27.20 E-value=54 Score=32.48 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=29.7
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 95 GRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 95 ~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
.-...++ ...|...+++++++.||++|+.||+|-+
T Consensus 160 v~i~~~~-n~tG~~~~~~~i~~~~~~~~~~~ivD~a 194 (397)
T TIGR01976 160 VAVTAAS-NTLGSIVDLAAITELVHAAGALVVVDAV 194 (397)
T ss_pred EEEeCCC-CCCCccCCHHHHHHHHHHcCCEEEEehh
Confidence 3345566 7788888999999999999999999996
No 412
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=27.14 E-value=71 Score=32.31 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEec
Q 045962 192 HLNPRVQKELSDWMNWLKTEIGFDGWRFD 220 (423)
Q Consensus 192 ~~~p~v~~~~~~~l~~w~~~~gvDGfR~D 220 (423)
..+++.|+.+++.+..+++++|+||+-||
T Consensus 100 ~~~~~~R~~Fi~siv~~l~~~~fDGidiD 128 (413)
T cd02873 100 LESSESRNAFINSAHSLLKTYGFDGLDLA 128 (413)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCCCeEee
Confidence 35688899999998888888999999998
No 413
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=27.10 E-value=55 Score=31.91 Aligned_cols=37 Identities=8% Similarity=0.210 Sum_probs=30.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEe--cccC
Q 045962 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIV--INHR 134 (423)
Q Consensus 97 ~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V--~nh~ 134 (423)
...+. ..-|...+++++++.||++|+.|++|-+ +.+.
T Consensus 144 ~~~~~-n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~ 182 (353)
T TIGR03235 144 IMHVN-NETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKI 182 (353)
T ss_pred EEccc-CCceeccCHHHHHHHHHHcCCEEEEEchhhcCCc
Confidence 34556 6778888999999999999999999998 5544
No 414
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=27.08 E-value=1e+02 Score=30.38 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=27.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccc
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~nh 133 (423)
.+. +.-.+.++..+.++.||+.||++..=+.+.|
T Consensus 179 ~i~-~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl 212 (351)
T TIGR03700 179 QIC-PEKISAERWLEIHRTAHELGLKTNATMLYGH 212 (351)
T ss_pred hcC-CCCCCHHHHHHHHHHHHHcCCCcceEEEeeC
Confidence 444 4334578888999999999999999999997
No 415
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=27.07 E-value=79 Score=26.06 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~Vil 127 (423)
+.+|++++++.|+++|++|.+
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~ 29 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRV 29 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEE
Confidence 689999999999999999875
No 416
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=27.04 E-value=90 Score=30.62 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
+.++..+-++.||+.||+|..=+.+.|-
T Consensus 177 ~~~~~~~~i~~a~~~Gi~v~s~~i~G~~ 204 (343)
T TIGR03551 177 STAEWIEIIKTAHKLGIPTTATIMYGHV 204 (343)
T ss_pred CHHHHHHHHHHHHHcCCcccceEEEecC
Confidence 5678889999999999999999888866
No 417
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=26.98 E-value=56 Score=32.68 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=27.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.+. ...|...+++++++.||++|+.||+|-+..
T Consensus 154 ~p~-NptG~v~dl~~I~~la~~~gi~livD~t~~ 186 (390)
T PRK08133 154 TPS-NPLTELADIAALAEIAHAAGALLVVDNCFC 186 (390)
T ss_pred CCC-CCCCCcCCHHHHHHHHHHcCCEEEEECCCc
Confidence 344 567777889999999999999999999853
No 418
>PRK08064 cystathionine beta-lyase; Provisional
Probab=26.97 E-value=60 Score=32.47 Aligned_cols=33 Identities=6% Similarity=0.088 Sum_probs=28.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 98 ~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
..+. ...|...+++++++.||++|+.||+|-..
T Consensus 145 ~~p~-NptG~~~dl~~I~~la~~~g~~vvvD~a~ 177 (390)
T PRK08064 145 ETPS-NPLLKVTDIRGVVKLAKAIGCLTFVDNTF 177 (390)
T ss_pred ECCC-CCCcEeccHHHHHHHHHHcCCEEEEECCC
Confidence 4455 66888889999999999999999999663
No 419
>TIGR03620 F420_MSMEG_4141 probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria.
Probab=26.87 E-value=79 Score=30.10 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=25.8
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
.||-+.+.++|..++++|++.|.+.|.-
T Consensus 233 ~Gtp~ev~e~l~~~~~aGvd~l~l~~~~ 260 (278)
T TIGR03620 233 WGDADTVAARVREHLDAGADHVAVQVLT 260 (278)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 5899999999999999999999988865
No 420
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=26.81 E-value=73 Score=25.78 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
+.-|...+..++++.|+++|+++|+
T Consensus 68 S~~g~~~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 68 SFSGETKETVEAAEIAKERGAKVIA 92 (139)
T ss_pred eCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 5557778899999999999999854
No 421
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.79 E-value=2e+02 Score=28.37 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=36.6
Q ss_pred HHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 045962 42 YNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKK 121 (423)
Q Consensus 42 ~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~ 121 (423)
-+.+.+-.+.++++++ .|.|.|.. +. . | .+|... +.+.++++.+.+.++
T Consensus 265 ~e~~~~L~~ll~~l~~-~vnlIPyn----------~~---------~--~---~~~~~p------s~e~i~~f~~~L~~~ 313 (349)
T PRK14463 265 LEDAKRLVRLLSDIPS-KVNLIPFN----------EH---------E--G---CDFRSP------TQEAIDRFHKYLLDK 313 (349)
T ss_pred HHHHHHHHHHHhccCc-eEEEEecC----------CC---------C--C---CCCCCC------CHHHHHHHHHHHHHC
Confidence 4555555666677765 67777776 32 1 1 123332 368899999999999
Q ss_pred CCEEEE
Q 045962 122 GIKCLA 127 (423)
Q Consensus 122 Gi~Vil 127 (423)
|+.|.+
T Consensus 314 gi~v~v 319 (349)
T PRK14463 314 HVTVIT 319 (349)
T ss_pred CceEEE
Confidence 999965
No 422
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=26.74 E-value=57 Score=32.58 Aligned_cols=34 Identities=6% Similarity=0.176 Sum_probs=29.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 97 ~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
...+. ...|...+++++++.||++|+.|++|-+-
T Consensus 148 v~~~~-n~tG~~~~~~~I~~l~~~~g~~livD~a~ 181 (402)
T TIGR02006 148 IMHVN-NEIGVIQDIAAIGEICRERKVFFHVDAAQ 181 (402)
T ss_pred EECCC-cCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 45566 77899999999999999999999999984
No 423
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=26.73 E-value=1.5e+02 Score=28.06 Aligned_cols=27 Identities=4% Similarity=-0.097 Sum_probs=24.5
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
-+.+..++...+.+++|+++|-++|++
T Consensus 77 ~s~~~~i~~a~~a~~~Gad~v~v~pP~ 103 (285)
T TIGR00674 77 NATEEAISLTKFAEDVGADGFLVVTPY 103 (285)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 357899999999999999999999987
No 424
>PRK09082 methionine aminotransferase; Validated
Probab=26.71 E-value=75 Score=31.50 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=28.1
Q ss_pred CCCC---CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 103 SSYG---SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 103 ~~~G---t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
...| +.++++++++-|+++|+.||.|-++.+..
T Consensus 174 NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~ 209 (386)
T PRK09082 174 NPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIV 209 (386)
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhc
Confidence 4556 46999999999999999999999987654
No 425
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=26.54 E-value=51 Score=32.80 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=29.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 97 ~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
...++ ...|...+++++++.||++|+.|++|-+-
T Consensus 163 i~~~~-n~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 196 (398)
T TIGR03392 163 LGQMS-NVTGGCPDLARAITLAHQYGAVVVVDGAQ 196 (398)
T ss_pred EECcc-ccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 44566 77899889999999999999999999986
No 426
>PLN02368 alanine transaminase
Probab=26.47 E-value=74 Score=32.09 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 228 s~e~l~~l~~~a~~~~~~II~DE~Y~~l~ 256 (407)
T PLN02368 228 SEANLREILKFCYQERLVLLGDEVYQQNI 256 (407)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 58999999999999999999999998775
No 427
>PRK06348 aspartate aminotransferase; Provisional
Probab=26.37 E-value=72 Score=31.61 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.+++++|++.|+++|+-||.|-++.+..
T Consensus 180 s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 208 (384)
T PRK06348 180 SKETLEEIAKIAIEYDLFIISDEVYDGFS 208 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEEEecccccce
Confidence 57899999999999999999999988764
No 428
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=26.32 E-value=65 Score=31.53 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+.||.|-++.+..
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVASDECYLELG 188 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecchhhhc
Confidence 57899999999999999999999987654
No 429
>PRK07503 methionine gamma-lyase; Provisional
Probab=26.31 E-value=57 Score=32.80 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=27.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 100 LHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 100 id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
+. ...|...+++++++.||++|+.||+|-..-
T Consensus 159 p~-NPtG~~~di~~I~~la~~~gi~lIvD~a~a 190 (403)
T PRK07503 159 PA-NPNMRLVDIAAVAEIAHGAGAKVVVDNTYC 190 (403)
T ss_pred CC-CCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 44 556888889999999999999999998864
No 430
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.29 E-value=1.4e+02 Score=29.84 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=35.1
Q ss_pred HHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 045962 43 NFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKG 122 (423)
Q Consensus 43 ~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~G 122 (423)
....+.+..++++|+++|.+...- ..|.+.- .. . .....+++-+++++.|
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~~~d-------------------------l~P~~~~-~~-e---~~~~~~~lk~~L~~~G 81 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFHDDD-------------------------LIPFGAP-PQ-E---RDQIVRRFKKALDETG 81 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEecccc-------------------------cCCCCCC-hh-H---HHHHHHHHHHHHHHhC
Confidence 467788899999999999864211 0010000 00 0 1244778888899999
Q ss_pred CEEEE
Q 045962 123 IKCLA 127 (423)
Q Consensus 123 i~Vil 127 (423)
|+|..
T Consensus 82 L~v~~ 86 (382)
T TIGR02631 82 LKVPM 86 (382)
T ss_pred CeEEE
Confidence 99876
No 431
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=26.10 E-value=60 Score=31.40 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
..-|...+++++++.||++|+.||+|-+.-
T Consensus 157 ~~~G~~~~~~~i~~l~~~~~~~li~De~~~ 186 (360)
T TIGR00858 157 SMDGDIAPLPQLVALAERYGAWLMVDDAHG 186 (360)
T ss_pred cCCCCCcCHHHHHHHHHHcCcEEEEECccc
Confidence 344667789999999999999999999853
No 432
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=26.09 E-value=81 Score=30.85 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+.||+|-++.+..
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (356)
T PRK08056 160 ERQLLQAIAERCKSLNIALILDEAFIDFI 188 (356)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecchhccC
Confidence 47889999999999999999999986553
No 433
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=26.07 E-value=1.9e+02 Score=27.79 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=23.8
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
+....++...+.+++|+++|-++|++
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILLLPPY 111 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 57889999999999999999999987
No 434
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=26.04 E-value=76 Score=29.06 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCEEEEEEec
Q 045962 109 NELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 109 ~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
++++++++.||+.|+++|+|...
T Consensus 109 ~~i~~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 109 EELARVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEEec
Confidence 48999999999999999997644
No 435
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=25.97 E-value=2.3e+02 Score=27.93 Aligned_cols=84 Identities=8% Similarity=-0.115 Sum_probs=51.3
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCc--ccc-ccccccccCCCCCCC----------CcccccCCCCCCCCCC
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPR--LFF-HSIIHQAYSHASLAG----------YMPGRLYDLHASSYGS 107 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~--~~~-~~~~~~~~~~~~~~G----------Y~~~d~~~id~~~~Gt 107 (423)
+++..++.+..|+++|+..|+ -|+...+-+.. ... .++. - -.+.+-++ -...|...+|+.+.|+
T Consensus 201 ~~~~A~~~~~~l~~~~l~~iE-eP~~~~d~~~~~~l~~~~~ip-I-a~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GG 277 (368)
T cd03329 201 SRADALRLGRALEELGFFWYE-DPLREASISSYRWLAEKLDIP-I-LGTEHSRGALESRADWVLAGATDFLRADVNLVGG 277 (368)
T ss_pred CHHHHHHHHHHhhhcCCCeEe-CCCCchhHHHHHHHHhcCCCC-E-EccCcccCcHHHHHHHHHhCCCCEEecCccccCC
Confidence 467888888899999988877 34431100000 000 0000 0 00111111 2357788888556699
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q 045962 108 QNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~Vil 127 (423)
..+.+++++.|+++|+.++.
T Consensus 278 it~~~~ia~~a~~~gi~~~~ 297 (368)
T cd03329 278 ITGAMKTAHLAEAFGLDVEL 297 (368)
T ss_pred HHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999975
No 436
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=25.89 E-value=55 Score=32.08 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=27.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 98 ~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
-.++ ...|...+++++++.||++|+.|++|-+.
T Consensus 146 ~~~~-~~tG~~~~~~~i~~~~~~~~~~li~D~a~ 178 (373)
T cd06453 146 THVS-NVLGTINPVKEIGEIAHEAGVPVLVDGAQ 178 (373)
T ss_pred eCcc-cccCCcCCHHHHHHHHHHcCCEEEEEhhh
Confidence 3455 66788888999999999999999999763
No 437
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=25.88 E-value=97 Score=31.94 Aligned_cols=68 Identities=13% Similarity=0.277 Sum_probs=47.4
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
...+.-..+.++-+|+||+++--++=-+ .. +.+ .|.. .++ + .+.+=.++||++|
T Consensus 50 ~d~Y~ry~eDi~L~~~lG~~~yRfSIsW----------sR-I~P-------~G~g-----~vN-~--~gl~~Y~~lid~l 103 (469)
T PRK13511 50 SDFYHRYPEDLKLAEEFGVNGIRISIAW----------SR-IFP-------DGYG-----EVN-P--KGVEYYHRLFAEC 103 (469)
T ss_pred cchhhhhHHHHHHHHHhCCCEEEeeccH----------hh-cCc-------CCCC-----CcC-H--HHHHHHHHHHHHH
Confidence 3457778899999999999998876444 21 111 1111 133 2 2466789999999
Q ss_pred HHcCCEEEEEEecccC
Q 045962 119 NKKGIKCLADIVINHR 134 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~ 134 (423)
.++||+.|+.+. |-
T Consensus 104 ~~~GI~P~VTL~--H~ 117 (469)
T PRK13511 104 HKRHVEPFVTLH--HF 117 (469)
T ss_pred HHcCCEEEEEec--CC
Confidence 999999998764 55
No 438
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=25.85 E-value=71 Score=25.39 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEE
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLAD 128 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD 128 (423)
|---+.+++++|++.|+++|..|++.
T Consensus 94 P~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 94 PLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp SSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 33447999999999999999998864
No 439
>PLN02656 tyrosine transaminase
Probab=25.82 E-value=68 Score=32.19 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 187 s~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (409)
T PLN02656 187 SYQHLKKIAETAEKLKILVIADEVYGHLA 215 (409)
T ss_pred CHHHHHHHHHHHHHcCCEEEEehhhhhcc
Confidence 35899999999999999999999998765
No 440
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=25.75 E-value=74 Score=32.67 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCLADI 129 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~ 129 (423)
+.++++++.+-|+++|+.||.|-
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 58999999999999999999997
No 441
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=25.73 E-value=61 Score=32.31 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=27.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.+. ...|...+++++++.||++|+.||+|-+.-
T Consensus 142 sP~-Nptg~~~di~~I~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 142 TPS-NPLLKITDLAQCASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred CCC-CCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 345 567777889999999999999999997754
No 442
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=25.71 E-value=1.3e+02 Score=29.02 Aligned_cols=61 Identities=25% Similarity=0.305 Sum_probs=40.1
Q ss_pred hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 49 IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 49 L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
--.|..+|..++.+.|.... . .........|-.-+= +.-|..+++.+.++.|+++|++||.
T Consensus 61 ~~~l~~~g~~~~~~~~~~~~--------~---------~~~~~~~~~d~~i~i-S~sG~t~~~~~~~~~ak~~g~~vI~ 121 (321)
T PRK11543 61 AATLASTGTPAFFVHPAEAL--------H---------GDLGMIESRDVMLFI-SYSGGAKELDLIIPRLEDKSIALLA 121 (321)
T ss_pred HHHHHcCCCceeecChHHHh--------h---------CCcCccCCCCEEEEE-eCCCCcHHHHHHHHHHHHcCCeEEE
Confidence 45677899999888764311 0 011112333333333 5668889999999999999999985
No 443
>PRK09989 hypothetical protein; Provisional
Probab=25.69 E-value=1.1e+02 Score=28.30 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=38.6
Q ss_pred HHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 045962 44 FLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKGI 123 (423)
Q Consensus 44 ~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi 123 (423)
.+...++..+++|+..|.+.|-. .. .+......+.. ..+.|+++++.|.+.|+
T Consensus 86 ~l~~~i~~A~~lg~~~v~v~~g~----------~~-----------~~~~~~~~~~~------~~~~l~~l~~~a~~~gv 138 (258)
T PRK09989 86 DIDLALEYALALNCEQVHVMAGV----------VP-----------AGEDAERYRAV------FIDNLRYAADRFAPHGK 138 (258)
T ss_pred HHHHHHHHHHHhCcCEEEECccC----------CC-----------CCCCHHHHHHH------HHHHHHHHHHHHHhcCC
Confidence 35555777899999999766543 11 01111110100 24779999999999999
Q ss_pred EEEEEEec
Q 045962 124 KCLADIVI 131 (423)
Q Consensus 124 ~VilD~V~ 131 (423)
.+.+.-+.
T Consensus 139 ~l~lE~l~ 146 (258)
T PRK09989 139 RILVEALS 146 (258)
T ss_pred EEEEEeCC
Confidence 99877543
No 444
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=25.68 E-value=1.2e+02 Score=30.16 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRTA 136 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~~ 136 (423)
.+.++++.+.|+++|+-+|+|-|...++.
T Consensus 198 ~~~l~~l~~l~~~~~~lli~Dev~~g~g~ 226 (400)
T PTZ00125 198 DGYLKQVYELCKKYNVLLIVDEIQTGLGR 226 (400)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 45699999999999999999999865553
No 445
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=25.66 E-value=79 Score=30.50 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
.++ +..|...+++++++.||++|+-+|+|-+
T Consensus 133 ~~~-~~~G~~~~~~~i~~l~~~~~~~livD~~ 163 (355)
T TIGR03301 133 HHE-TTTGILNPLEAIAKVARSHGAVLIVDAM 163 (355)
T ss_pred ecC-CcccchhHHHHHHHHHHHcCCEEEEEec
Confidence 355 6679999999999999999999999965
No 446
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=25.53 E-value=95 Score=32.01 Aligned_cols=68 Identities=13% Similarity=0.278 Sum_probs=46.0
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
...+....+.+.-+|+||+++--++=-+ .. +.+ .|.. .++ + ...+=.++||++|
T Consensus 49 ~d~yhry~eDi~L~~~lG~~~yRfSIsW----------sR-I~P-------~g~~-----~~N-~--~gl~~Y~~lid~l 102 (467)
T TIGR01233 49 SDFYHKYPVDLELAEEYGVNGIRISIAW----------SR-IFP-------TGYG-----EVN-E--KGVEFYHKLFAEC 102 (467)
T ss_pred CchhhhHHHHHHHHHHcCCCEEEEecch----------hh-ccC-------CCCC-----CcC-H--HHHHHHHHHHHHH
Confidence 3457778889999999999998875433 11 111 1111 133 1 2356689999999
Q ss_pred HHcCCEEEEEEecccC
Q 045962 119 NKKGIKCLADIVINHR 134 (423)
Q Consensus 119 H~~Gi~VilD~V~nh~ 134 (423)
.++||+.|+-+ .|.
T Consensus 103 ~~~GI~P~VTL--~H~ 116 (467)
T TIGR01233 103 HKRHVEPFVTL--HHF 116 (467)
T ss_pred HHcCCEEEEec--cCC
Confidence 99999999765 465
No 447
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=25.52 E-value=7.1e+02 Score=25.10 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=40.6
Q ss_pred hhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEE
Q 045962 49 IPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGS-QNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 49 L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt-~~~l~~lv~~aH~~Gi~Vil 127 (423)
..-+|+.|...|. |+.+|.+. .--.+++|..-+++..|. .+-+.++.+++.++||+.
T Consensus 60 ar~fK~aGAKyvi--lvakHHDG------------------FaLw~t~ys~wnsvk~GpKrDlvgela~Avr~qGL~F-- 117 (430)
T COG3669 60 ARLFKEAGAKYVI--LVAKHHDG------------------FALWPTDYSVWNSVKRGPKRDLVGELAKAVREQGLRF-- 117 (430)
T ss_pred HHHHHHcCCcEEE--EeeeecCC------------------eeecccccccccccccCCcccHHHHHHHHHHHcCCee--
Confidence 4578999999776 66654221 111223444444466775 466889999999999976
Q ss_pred EEecccCC
Q 045962 128 DIVINHRT 135 (423)
Q Consensus 128 D~V~nh~~ 135 (423)
-|.+|-+
T Consensus 118 -Gvy~s~a 124 (430)
T COG3669 118 -GVYLSGA 124 (430)
T ss_pred -eEeeccC
Confidence 3456655
No 448
>PRK07582 cystathionine gamma-lyase; Validated
Probab=25.50 E-value=67 Score=31.79 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
..-|...+++++++.||++|+.||+|-+.
T Consensus 143 NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 143 NPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 44566778999999999999999999975
No 449
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=25.49 E-value=65 Score=32.26 Aligned_cols=32 Identities=9% Similarity=0.167 Sum_probs=26.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 100 LHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 100 id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
+. ...|...+++++++.||++|+.||+|-..-
T Consensus 153 p~-Np~G~v~dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 153 PA-NPTMKLIDMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred CC-CCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence 44 556777889999999999999999998854
No 450
>PLN02721 threonine aldolase
Probab=25.49 E-value=75 Score=30.71 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEec
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
.++++++++.||++|+.||+|-..
T Consensus 157 ~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 157 VEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEEEchh
Confidence 577999999999999999999753
No 451
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=25.31 E-value=1.9e+02 Score=27.25 Aligned_cols=27 Identities=11% Similarity=0.018 Sum_probs=24.5
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
.+.+..++...+.+++|+++|-++|++
T Consensus 76 ~~~~~~i~~a~~a~~~Gad~v~v~pP~ 102 (281)
T cd00408 76 NSTREAIELARHAEEAGADGVLVVPPY 102 (281)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 467889999999999999999999987
No 452
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=25.27 E-value=40 Score=28.40 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHcC-CCceEEecCCCC---CchhHHHHHHHHHHHHhcCcc
Q 045962 335 YILTH-PGTPSIFYDHLF---DWDLKKEIGKLAAIRTKNGIN 372 (423)
Q Consensus 335 ~~~~~-pG~P~iy~G~~~---~w~~~~~~~~L~~lR~~~~~l 372 (423)
++.-. ||||+|.-|+.. .-.+.++++.|-+.-+..|.+
T Consensus 81 ~i~pYPPGIPll~pGE~it~~~~~~i~yl~~l~~~~~~fpGf 122 (136)
T PF03711_consen 81 FIVPYPPGIPLLVPGERITEETEEIIDYLLALQEFGAHFPGF 122 (136)
T ss_dssp -BEECTTTS-SB-TTEEB-STTHHHHHHHHHHHHHHTCSTTS
T ss_pred eeeecCCCCcEECCccccccchHHHHHHHHHHHHhCCcCcCC
Confidence 33345 499999999877 345777777777777777755
No 453
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=25.26 E-value=1.3e+02 Score=29.30 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccc
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh 133 (423)
.++-.+.++.||+.||++-.++.++|
T Consensus 148 ~~~~l~~i~~a~~~Gi~~~s~~i~G~ 173 (322)
T TIGR03550 148 PAVRLETIEDAGRLKIPFTTGILIGI 173 (322)
T ss_pred HHHHHHHHHHHHHcCCCccceeeEeC
Confidence 35678999999999999999999998
No 454
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.24 E-value=63 Score=32.93 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=26.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
.+. ...|...+++++++.||++|+.||+|-..
T Consensus 157 ~~~-np~g~v~Di~~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 157 TLG-NPGLEVLDIPTVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred CCC-cccCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 344 55667788999999999999999999774
No 455
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=25.20 E-value=1.3e+02 Score=29.02 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
+.++..+.++.||+.||++..-+.+.|-
T Consensus 143 t~~~~l~~i~~a~~~Gi~~~s~~iiG~~ 170 (309)
T TIGR00423 143 SSDEWLEVIKTAHRLGIPTTATMMFGHV 170 (309)
T ss_pred CHHHHHHHHHHHHHcCCCceeeEEecCC
Confidence 6788889999999999999999999976
No 456
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=25.19 E-value=50 Score=32.29 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
...|+..+++++.+.||++|+.|++|-+..
T Consensus 162 ~~tG~~~~l~~I~~l~~~~g~~livD~a~~ 191 (371)
T PRK13520 162 TELGQVDPIPELSKIALENGIFLHVDAAFG 191 (371)
T ss_pred cCCcccCCHHHHHHHHHHcCCCEEEEecch
Confidence 567888999999999999999999999643
No 457
>PLN02624 ornithine-delta-aminotransferase
Probab=25.19 E-value=2e+02 Score=29.68 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
.+-|+++.+.|+++|+-+|+|-|...++
T Consensus 244 ~~~L~~l~~lc~~~gillI~DEv~tG~G 271 (474)
T PLN02624 244 DGYLKAVRELCSKHNVLMIADEIQTGLA 271 (474)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCcC
Confidence 3459999999999999999999976544
No 458
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=25.17 E-value=35 Score=33.61 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=32.6
Q ss_pred CcccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 92 YMPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 92 Y~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
....-+..++ ..-|...+++++.+.||++|.-+++|.+=
T Consensus 140 ~~lv~~~~~~-~~tG~~~pi~~I~~~~~~~~~~~~vD~~~ 178 (371)
T PF00266_consen 140 TRLVSISHVE-NSTGVRNPIEEIAKLAHEYGALLVVDAAQ 178 (371)
T ss_dssp ESEEEEESBE-TTTTBBSSHHHHHHHHHHTTSEEEEE-TT
T ss_pred cceEEeeccc-ccccEEeeeceehhhhhccCCceeEechh
Confidence 4555567777 88899999999999999999999999874
No 459
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=25.11 E-value=1.2e+02 Score=24.14 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=37.3
Q ss_pred HHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 045962 43 NFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNKKG 122 (423)
Q Consensus 43 ~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~~G 122 (423)
+-+.+.++.||+.|+..- +.|.. +.|+ |+++++-++|++||+..
T Consensus 21 ~yVa~~i~~lk~~glky~-~~pm~-------------------------------T~iE----g~~del~~~ik~~~Ea~ 64 (100)
T COG0011 21 KYVAEAIEILKESGLKYQ-LGPMG-------------------------------TVIE----GELDELMEAVKEAHEAV 64 (100)
T ss_pred HHHHHHHHHHHHcCCcee-ecCcc-------------------------------eEEE----ecHHHHHHHHHHHHHHH
Confidence 445666889999998663 44433 3444 57899999999999874
Q ss_pred C-----EEEEEEecccC
Q 045962 123 I-----KCLADIVINHR 134 (423)
Q Consensus 123 i-----~VilD~V~nh~ 134 (423)
+ +|+..+=++|-
T Consensus 65 ~~~g~~Rv~t~ikId~R 81 (100)
T COG0011 65 FEKGAPRVSTVIKIDER 81 (100)
T ss_pred HhcCCceEEEEEEeeee
Confidence 3 34555545444
No 460
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=25.07 E-value=51 Score=33.86 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCLADI 129 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~ 129 (423)
..-+++++++.||++|+.||+|.
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEC
Confidence 45679999999999999999995
No 461
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=25.02 E-value=80 Score=29.77 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=24.8
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 103 SSYGS--QNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 103 ~~~Gt--~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.++|. ..+|+++++.++++|..||+|+=++
T Consensus 65 ~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~ 96 (261)
T TIGR02127 65 ERFGSEGFKALEEVIAHARSLGLPVLADVKRG 96 (261)
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 44453 6778889999999999999999776
No 462
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=24.94 E-value=1.7e+02 Score=28.37 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHcCC-EEEEEEec
Q 045962 105 YGSQNELKSLIQAFNKKGI-KCLADIVI 131 (423)
Q Consensus 105 ~Gt~~~l~~lv~~aH~~Gi-~VilD~V~ 131 (423)
-|+.+...+.+++|.+.|+ .|-+..|+
T Consensus 136 ~g~~~~vl~~i~~~~~~Gi~~v~in~v~ 163 (329)
T PRK13361 136 NGRLERVIAGIDAAKAAGFERIKLNAVI 163 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 3678899999999999999 78888776
No 463
>PRK05367 glycine dehydrogenase; Provisional
Probab=24.88 E-value=53 Score=37.09 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEec
Q 045962 102 ASSYGSQNELKSLIQAFNKKGIKCLADIVI 131 (423)
Q Consensus 102 ~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~ 131 (423)
|..+|..++++++++.||++|.-+++|..+
T Consensus 215 p~~~G~i~d~~~i~~~ah~~Gal~~vda~~ 244 (954)
T PRK05367 215 PGTSGEVRDYTALIAAAHARGALVAVAADL 244 (954)
T ss_pred CCCCeeeccHHHHHHHHHHcCCEEEEEehh
Confidence 478899999999999999999999998755
No 464
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=24.86 E-value=91 Score=31.36 Aligned_cols=76 Identities=11% Similarity=0.098 Sum_probs=45.2
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
||++.-+..- ++.+||+..+.-|--.- ..... .......++-...+- ...-..-|++++++.|
T Consensus 113 G~t~~~~~~~---l~~~gi~~~~~d~~~~~---------~~~~~----~~~~~tk~v~lEtPs-NP~l~v~DI~~i~~~A 175 (396)
T COG0626 113 GGTYRLFEKI---LQKFGVEVTFVDPGDDE---------ALEAA----IKEPNTKLVFLETPS-NPLLEVPDIPAIARLA 175 (396)
T ss_pred chHHHHHHHH---HHhcCeEEEEECCCChH---------HHHHH----hcccCceEEEEeCCC-CcccccccHHHHHHHH
Confidence 4666555444 35599999887764410 00000 000123333334444 5555677799999999
Q ss_pred HHcCCEEEEEEec
Q 045962 119 NKKGIKCLADIVI 131 (423)
Q Consensus 119 H~~Gi~VilD~V~ 131 (423)
|++|+.||+|=.+
T Consensus 176 ~~~g~~vvVDNTf 188 (396)
T COG0626 176 KAYGALVVVDNTF 188 (396)
T ss_pred HhcCCEEEEECCc
Confidence 9999999999444
No 465
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=24.78 E-value=2.3e+02 Score=24.59 Aligned_cols=68 Identities=24% Similarity=0.251 Sum_probs=31.3
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFN 119 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH 119 (423)
||+..+..++..=+ . ++.|.++|++ -+ ++|.+ .+-|++. ..+.. -.+.+|++.+.
T Consensus 55 gD~~~~~~~~~~~~-~-~D~vFlSPPW----------GG--------p~Y~~---~~~fdL~-~~~~p-~~~~~l~~~~~ 109 (163)
T PF09445_consen 55 GDFFELLKRLKSNK-I-FDVVFLSPPW----------GG--------PSYSK---KDVFDLE-KSMQP-FNLEDLLKAAR 109 (163)
T ss_dssp S-HHHHGGGB--------SEEEE---B----------SS--------GGGGG---SSSB-TT-TSSSS---HHHHHHHHH
T ss_pred CCHHHHHhhccccc-c-ccEEEECCCC----------CC--------ccccc---cCccCHH-HccCC-CCHHHHHHHHH
Confidence 67777655543211 2 8999999999 22 33333 3344554 33322 34777777777
Q ss_pred HcCCEEEEEEecc
Q 045962 120 KKGIKCLADIVIN 132 (423)
Q Consensus 120 ~~Gi~VilD~V~n 132 (423)
+.--.|++=+.=|
T Consensus 110 ~~t~nv~l~LPRn 122 (163)
T PF09445_consen 110 KITPNVVLFLPRN 122 (163)
T ss_dssp HH-S-EEEEEETT
T ss_pred hhCCCEEEEeCCC
Confidence 7766777655544
No 466
>PRK08175 aminotransferase; Validated
Probab=24.78 E-value=76 Score=31.57 Aligned_cols=29 Identities=3% Similarity=0.096 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+.||.|-++.+..
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~De~y~~l~ 210 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVHDLAYADIV 210 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecchHhhc
Confidence 58999999999999999999998886543
No 467
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=24.76 E-value=81 Score=32.27 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEe
Q 045962 108 QNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
+++++++.+-|+++|+.|++|-.
T Consensus 190 ~~~l~~I~elA~~~Gl~vi~DaA 212 (450)
T TIGR02618 190 MANMREVRELCEAHGIKVFYDAT 212 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcc
Confidence 58999999999999999999964
No 468
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=24.74 E-value=2.3e+02 Score=27.01 Aligned_cols=27 Identities=7% Similarity=-0.164 Sum_probs=24.5
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
.+.+..++...+.+++|+++|-++|++
T Consensus 80 ~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 80 VNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 467899999999999999999998877
No 469
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=24.74 E-value=76 Score=30.23 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
+++.|+++++++++.|+.||+|+=.+-.
T Consensus 71 G~~~l~~~i~~l~~~g~~VilD~K~~DI 98 (278)
T PRK00125 71 GLAQLERTIAYLREAGVLVIADAKRGDI 98 (278)
T ss_pred hhhHHHHHHHHHHHCCCcEEEEeecCCh
Confidence 3567888999999999999999977633
No 470
>PRK06207 aspartate aminotransferase; Provisional
Probab=24.72 E-value=83 Score=31.51 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+-||.|-++....
T Consensus 196 s~e~l~~l~~~a~~~~~~iI~De~Y~~~~ 224 (405)
T PRK06207 196 SAEEIAQIAALARRYGATVIVDQLYSRLL 224 (405)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence 47899999999999999999999998764
No 471
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=24.66 E-value=1.6e+02 Score=28.60 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~Vil 127 (423)
+.+++.++++-+++.|+.+.+
T Consensus 168 N~~ei~~~~~~~~~~gi~~~~ 188 (329)
T PRK13361 168 NDDEVLDLVEFCRERGLDIAF 188 (329)
T ss_pred CHHHHHHHHHHHHhcCCeEEE
Confidence 468899999999999987753
No 472
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=24.51 E-value=1.1e+02 Score=27.54 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=45.8
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCC--------CHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYG--------SQNELK 112 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~G--------t~~~l~ 112 (423)
+...+.+.+..|+++||.. .|-=+- .+ .........-+.|+-.+| ..+- ...-++
T Consensus 131 ~~~~~~~~i~~l~~~G~~i-alddfg----------~~-----~~~~~~l~~l~~d~iKld-~~~~~~~~~~~~~~~~l~ 193 (241)
T smart00052 131 DDESAVATLQRLRELGVRI-ALDDFG----------TG-----YSSLSYLKRLPVDLLKID-KSFVRDLQTDPEDEAIVQ 193 (241)
T ss_pred ChHHHHHHHHHHHHCCCEE-EEeCCC----------Cc-----HHHHHHHHhCCCCeEEEC-HHHHhhhccChhHHHHHH
Confidence 4455668899999999973 432221 10 000011112234555556 4332 235699
Q ss_pred HHHHHHHHcCCEEEEEEeccc
Q 045962 113 SLIQAFNKKGIKCLADIVINH 133 (423)
Q Consensus 113 ~lv~~aH~~Gi~VilD~V~nh 133 (423)
.+++.||..|++||++-|=+.
T Consensus 194 ~l~~~~~~~~~~via~gVe~~ 214 (241)
T smart00052 194 SIIELAQKLGLQVVAEGVETP 214 (241)
T ss_pred HHHHHHHHCCCeEEEecCCCH
Confidence 999999999999999977653
No 473
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=24.50 E-value=90 Score=29.18 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCLADI 129 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~ 129 (423)
+.+++++|++.|+..||.+++.+
T Consensus 136 ~~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 136 TPSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred CHHHHHHHHHHHHHcCCceEEEE
Confidence 46789999999999999999987
No 474
>PRK05764 aspartate aminotransferase; Provisional
Probab=24.46 E-value=80 Score=31.24 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
+.++++++++.|+++|+.||+|-+....
T Consensus 182 ~~~~~~~l~~~a~~~~~~ii~De~y~~~ 209 (393)
T PRK05764 182 SPEELEAIADVAVEHDIWVLSDEIYEKL 209 (393)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccccce
Confidence 3689999999999999999999877543
No 475
>PRK05957 aspartate aminotransferase; Provisional
Probab=24.44 E-value=80 Score=31.36 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=28.3
Q ss_pred CCCC---CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 103 SSYG---SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 103 ~~~G---t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
...| +.++++++++.||++|+-||.|-++.+..
T Consensus 171 NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~ 206 (389)
T PRK05957 171 NPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFT 206 (389)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence 4456 57899999999999999999999987664
No 476
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=24.43 E-value=62 Score=31.65 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=27.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 98 YDLHASSYGSQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 98 ~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
..++ ..-|...+++++++.||++|+-||+|-+
T Consensus 136 ~~~~-~~tG~~~~i~~I~~l~~~~g~~livD~~ 167 (363)
T TIGR02326 136 VHCE-TTTGILNPIEAVAKLAHRHGKVTIVDAM 167 (363)
T ss_pred Eeec-CCccccCcHHHHHHHHHHcCCEEEEEcc
Confidence 3456 6778888999999999999999999976
No 477
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.34 E-value=69 Score=30.87 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=30.2
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 045962 93 MPGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLAD 128 (423)
Q Consensus 93 ~~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD 128 (423)
...|...+|+.+.|+..+.+++++.|+++|++|++=
T Consensus 250 ~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 250 GAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVG 285 (316)
T ss_pred CCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 345556777778899999999999999999999874
No 478
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=24.32 E-value=70 Score=31.62 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=28.8
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 045962 94 PGRLYDLHASSYGSQNELKSLIQAFNKKGIKCLA 127 (423)
Q Consensus 94 ~~d~~~id~~~~Gt~~~l~~lv~~aH~~Gi~Vil 127 (423)
..|...+|+.+.|+..+++++++.|+++|++|+.
T Consensus 262 ~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~ 295 (365)
T cd03318 262 AADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYG 295 (365)
T ss_pred CCCeEEEeecccCCHHHHHHHHHHHHHcCCceee
Confidence 3566778877779999999999999999999763
No 479
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=24.28 E-value=1.1e+02 Score=28.72 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEE
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADI 129 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~ 129 (423)
.+||+.+++++++ +++||+.|+|-
T Consensus 50 G~lg~~~~l~~~l---~~~~i~~vIDA 73 (249)
T PF02571_consen 50 GRLGDEEGLAEFL---RENGIDAVIDA 73 (249)
T ss_pred CCCCCHHHHHHHH---HhCCCcEEEEC
Confidence 7888888888776 67899999995
No 480
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=24.26 E-value=1.8e+02 Score=27.55 Aligned_cols=54 Identities=9% Similarity=-0.104 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEEeecCCCc
Q 045962 195 PRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFTVAEKWDSLS 251 (423)
Q Consensus 195 p~v~~~~~~~l~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~~gE~~~~~~ 251 (423)
+.+++++.+-+-.|++.||=|--=+=.-..+....++.+++. -.++.|...+++
T Consensus 181 ~gaqqfIlE~vp~~i~kYGkdtaff~TN~a~~epllk~~~~~---g~i~~e~~~psp 234 (275)
T PF12683_consen 181 AGAQQFILEDVPKWIKKYGKDTAFFCTNDAMTEPLLKQALEY---GGIFPEADLPSP 234 (275)
T ss_dssp HHHHHHHHHHHHHHHHHH-S--EEEESSHHHHHHHHHHHHHH-----BB---SS--T
T ss_pred HHHHHHHHHHHHHHHHHhCCceeEEecCccccHHHHHHHHHc---CCEEEeCCCCCh
Confidence 679999999999999999987544433222333455555443 345566655433
No 481
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=24.22 E-value=2e+02 Score=27.81 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHcCC-EEEEEEec
Q 045962 106 GSQNELKSLIQAFNKKGI-KCLADIVI 131 (423)
Q Consensus 106 Gt~~~l~~lv~~aH~~Gi-~VilD~V~ 131 (423)
++.+.+.+-++.|.+.|+ .|.+-+|+
T Consensus 141 ~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 141 DRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 678899999999999998 77777765
No 482
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=24.21 E-value=80 Score=32.31 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCLADI 129 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~ 129 (423)
+++.+++..+.||++||.|++|-
T Consensus 202 slenlr~V~~la~~~GIplhLDg 224 (467)
T TIGR02617 202 SLANLKAVYEIAKKYDIPVVMDS 224 (467)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEh
Confidence 48999999999999999999996
No 483
>PLN02417 dihydrodipicolinate synthase
Probab=24.19 E-value=2.2e+02 Score=27.01 Aligned_cols=26 Identities=4% Similarity=-0.101 Sum_probs=23.9
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
+.+..++...+.+++|+++|.++|++
T Consensus 81 ~t~~~i~~a~~a~~~Gadav~~~~P~ 106 (280)
T PLN02417 81 STREAIHATEQGFAVGMHAALHINPY 106 (280)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 57889999999999999999999987
No 484
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=24.16 E-value=4.3e+02 Score=28.25 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcC
Q 045962 197 VQKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNTM 238 (423)
Q Consensus 197 v~~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~ 238 (423)
.-+++.+.++.+.+ .|+|-+.+ |++..+.+....++++.++
T Consensus 152 t~e~~~~~ak~l~~-~Gad~I~IkDtaG~l~P~~v~~lv~alk 193 (596)
T PRK14042 152 TLDNFLELGKKLAE-MGCDSIAIKDMAGLLTPTVTVELYAGLK 193 (596)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEeCCcccCCCHHHHHHHHHHHH
Confidence 45678888888876 99999999 9999998877777755543
No 485
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.12 E-value=1.6e+02 Score=29.88 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEEEecccCCCC
Q 045962 107 SQNELKSLIQAFNKK--GIKCLADIVINHRTAE 137 (423)
Q Consensus 107 t~~~l~~lv~~aH~~--Gi~VilD~V~nh~~~~ 137 (423)
+.+++.++++.++++ |+.|..|+.+++-+..
T Consensus 273 ~~~~~~~~i~~lr~~~~~i~i~~d~IvGfPgET 305 (434)
T PRK14330 273 TREEYLELIEKIRSKVPDASISSDIIVGFPTET 305 (434)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCC
Confidence 688999999999997 8999999999987643
No 486
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.04 E-value=71 Score=32.49 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=28.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 99 DLHASSYGSQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 99 ~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.+. ...|..-+++++++.||++|+.||+|-+..
T Consensus 157 sp~-NPtG~v~di~~I~~la~~~gi~vIvD~t~a 189 (431)
T PRK08248 157 TIG-NPKGDVLDIEAVAAIAHEHGIPLIVDNTFA 189 (431)
T ss_pred CCC-CCCCcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence 455 667888889999999999999999998853
No 487
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=24.03 E-value=76 Score=30.12 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=29.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 97 LYDLHASSYGSQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 97 ~~~id~~~~Gt~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
...+| ..||+..|-++..+-||+.|+-++|--.
T Consensus 162 lTh~D-g~YGNl~Dakkva~ic~e~gvPlllN~A 194 (382)
T COG1103 162 LTHVD-GEYGNLADAKKVAKICREYGVPLLLNCA 194 (382)
T ss_pred EeccC-CCcCCchhhHHHHHHHHHcCCceEeecc
Confidence 46789 9999999999999999999999988643
No 488
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=24.02 E-value=1.1e+02 Score=30.77 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=58.4
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCcccc--------CCCCccccccccccccCCCCCCCCcccccCCCC---------
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSL--------CCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLH--------- 101 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~--------~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id--------- 101 (423)
.|-.+++...+--+-+-|...|.+=|.|.. +..+. +-. .....+..+..-.+.|...++
T Consensus 100 ~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv--~v~--~~~~~g~~~s~~~~~D~~~le~~~t~kTk~ 175 (420)
T KOG0257|consen 100 AGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPV--FVP--LKPKEGNVSSSDWTLDPEELESKITEKTKA 175 (420)
T ss_pred cCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcce--eec--cccccccccCccccCChHHHHhhccCCccE
Confidence 355677887888888889999999888832 00000 000 000001111222333333322
Q ss_pred ------CCCCC---CHHHHHHHHHHHHHcCCEEEEEEecccCCCC
Q 045962 102 ------ASSYG---SQNELKSLIQAFNKKGIKCLADIVINHRTAE 137 (423)
Q Consensus 102 ------~~~~G---t~~~l~~lv~~aH~~Gi~VilD~V~nh~~~~ 137 (423)
-...| +.++|.++++-|.++|+=||.|=|+.|...+
T Consensus 176 Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d 220 (420)
T KOG0257|consen 176 IILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYD 220 (420)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhC
Confidence 03445 5899999999999999999999999987643
No 489
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=23.98 E-value=4e+02 Score=27.36 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcC
Q 045962 198 QKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNTM 238 (423)
Q Consensus 198 ~~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~ 238 (423)
-+++.+.++...+ .|+|-+++ |++....+....++++.++
T Consensus 153 ~~~~~~~a~~l~~-~Gad~I~i~Dt~G~l~P~~v~~lv~alk 193 (448)
T PRK12331 153 IDYFVKLAKEMQE-MGADSICIKDMAGILTPYVAYELVKRIK 193 (448)
T ss_pred HHHHHHHHHHHHH-cCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 3467777888876 99999999 9999998887777765543
No 490
>PRK07683 aminotransferase A; Validated
Probab=23.96 E-value=80 Score=31.34 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHR 134 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~ 134 (423)
+.++++++++.||++|+-||.|-++-..
T Consensus 179 s~~~~~~l~~~~~~~~~~ii~De~y~~~ 206 (387)
T PRK07683 179 SKEELQDIADVLKDKNIFVLSDEIYSEL 206 (387)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecccccc
Confidence 4799999999999999999999998754
No 491
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.93 E-value=2.3e+02 Score=26.56 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 108 QNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 108 ~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
.++..+++++|+++|++.++=+.++
T Consensus 126 ~ee~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 126 LEESGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred hHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4789999999999999998655554
No 492
>PRK06225 aspartate aminotransferase; Provisional
Probab=23.89 E-value=83 Score=31.05 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecc
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVIN 132 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~n 132 (423)
+.++++++++.|+++|+.+|.|-+..
T Consensus 175 ~~~~~~~i~~~a~~~~~~ii~De~y~ 200 (380)
T PRK06225 175 TEEEIKEFAEIARDNDAFLLHDCTYR 200 (380)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhHH
Confidence 37899999999999999999998874
No 493
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=23.84 E-value=2.5e+02 Score=26.77 Aligned_cols=27 Identities=7% Similarity=-0.093 Sum_probs=24.7
Q ss_pred CcHHHHHhhhhHHHHcCCcEEEcCCcc
Q 045962 40 GWYNFLKKRIPDIASAGITHVWLSSTF 66 (423)
Q Consensus 40 G~~~~~~~~L~ylk~lGi~~I~l~Pi~ 66 (423)
.+.+..++...+.+++|+++|-++|++
T Consensus 83 ~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 83 VNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 468899999999999999999999987
No 494
>PLN02428 lipoic acid synthase
Probab=23.83 E-value=2.5e+02 Score=27.74 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=45.0
Q ss_pred cHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 045962 41 WYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAFNK 120 (423)
Q Consensus 41 ~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~aH~ 120 (423)
+.+.+.+.++.|+++|++.+-+.... .. + ..+..| .+|=++++|.++-+.|-+
T Consensus 260 T~Edv~e~l~~Lrelgvd~vtigqyL----------~P---------s------~~h~~v--~~~v~p~~f~~~~~~~~~ 312 (349)
T PLN02428 260 TDEEVVQTMEDLRAAGVDVVTFGQYL----------RP---------T------KRHLPV--KEYVTPEKFEFWREYGEE 312 (349)
T ss_pred CHHHHHHHHHHHHHcCCCEEeecccc----------CC---------C------cceeee--ecccCHHHHHHHHHHHHH
Confidence 67888888888888888888665554 11 1 112333 356678999999999999
Q ss_pred cCCEEEEEEec
Q 045962 121 KGIKCLADIVI 131 (423)
Q Consensus 121 ~Gi~VilD~V~ 131 (423)
.|.+-|.--.+
T Consensus 313 ~gf~~v~sgp~ 323 (349)
T PLN02428 313 MGFRYVASGPL 323 (349)
T ss_pred cCCceEEecCc
Confidence 99876654333
No 495
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=23.69 E-value=93 Score=29.21 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q 045962 107 SQNELKSLIQAFNKKGIKCLADI 129 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~ 129 (423)
+.+.+++|++.||..||.+++.+
T Consensus 143 ~~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 143 SDDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEEE
Confidence 36789999999999999999987
No 496
>PTZ00413 lipoate synthase; Provisional
Probab=23.65 E-value=2.9e+02 Score=27.71 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=46.1
Q ss_pred CCcHHHHHhhhhHHHHcCCcEEEcCCccccCCCCccccccccccccCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 045962 39 GGWYNFLKKRIPDIASAGITHVWLSSTFSLCCSPRLFFHSIIHQAYSHASLAGYMPGRLYDLHASSYGSQNELKSLIQAF 118 (423)
Q Consensus 39 ~G~~~~~~~~L~ylk~lGi~~I~l~Pi~~~~~~~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~~Gt~~~l~~lv~~a 118 (423)
|=+.+.+++-+..|+++|++.|=|.-... ++ .. +..| .+|=+.++|..+-+.|
T Consensus 306 GET~eEvie~m~dLrelGVDivtIGQYL~---------Ps----------~~------h~~V--~~yv~P~~F~~~~~~a 358 (398)
T PTZ00413 306 GETEEEVRQTLRDLRTAGVSAVTLGQYLQ---------PT----------KT------RLKV--SRYAHPKEFEMWEEEA 358 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccccC---------CC----------cc------cCCc--eeccCHHHHHHHHHHH
Confidence 44788899999999999999885533330 11 11 2233 3566788999999999
Q ss_pred HHcCCEEEEEEec
Q 045962 119 NKKGIKCLADIVI 131 (423)
Q Consensus 119 H~~Gi~VilD~V~ 131 (423)
-+.|.+-|.--.+
T Consensus 359 ~~~Gf~~v~sgPl 371 (398)
T PTZ00413 359 MKMGFLYCASGPL 371 (398)
T ss_pred HHcCCceEEecCc
Confidence 9999877654443
No 497
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=23.61 E-value=87 Score=31.43 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.+++++|++.|+++|+-||.|-++.+..
T Consensus 188 s~~~~~~l~~~a~~~~~~ii~De~Y~~l~ 216 (409)
T PLN00143 188 SYEHLNKIAETARKLGILVIADEVYGHIV 216 (409)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEccccccc
Confidence 47999999999999999999999998764
No 498
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=23.60 E-value=77 Score=31.56 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecccCC
Q 045962 107 SQNELKSLIQAFNKKGIKCLADIVINHRT 135 (423)
Q Consensus 107 t~~~l~~lv~~aH~~Gi~VilD~V~nh~~ 135 (423)
+.++++++++.|+++|+.||.|-++.+..
T Consensus 186 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 214 (401)
T TIGR01264 186 SRQHLEEILAVAERQCLPIIADEIYGDMV 214 (401)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEhhhhhhc
Confidence 46899999999999999999999998765
No 499
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=23.59 E-value=63 Score=32.11 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q 045962 103 SSYGSQNELKSLIQAFNKKGIKCLADIV 130 (423)
Q Consensus 103 ~~~Gt~~~l~~lv~~aH~~Gi~VilD~V 130 (423)
+.+|+..+++++++.||++|+.||+|-+
T Consensus 170 ~~~~~~~~~~~I~~l~~~~~~~li~D~a 197 (402)
T cd00378 170 SAYPRPIDFKRFREIADEVGAYLLVDMA 197 (402)
T ss_pred cccCCCcCHHHHHHHHHhcCCEEEEEcc
Confidence 6778777899999999999999999987
No 500
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=23.56 E-value=4.7e+02 Score=26.96 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 045962 198 QKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITRLYMKNT 237 (423)
Q Consensus 198 ~~~~~~~l~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 237 (423)
.+++.+.++...+ .|+|-+++ |++....+....++++.+
T Consensus 152 ~e~~~~~a~~l~~-~Gad~I~i~Dt~G~l~P~~v~~Lv~~l 191 (467)
T PRK14041 152 LEYYLEFARELVD-MGVDSICIKDMAGLLTPKRAYELVKAL 191 (467)
T ss_pred HHHHHHHHHHHHH-cCCCEEEECCccCCcCHHHHHHHHHHH
Confidence 5678888888876 99999999 999999888777775544
Done!