BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045965
IHGGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVD
NCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVV
IFSASIGVMVQGQANMLTGL

High Scoring Gene Products

Symbol, full name Information P value
QRT3
QUARTET 3 		protein from Arabidopsis thaliana 5.7e-43
AT4G20040 protein from Arabidopsis thaliana 4.6e-34

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045965
        (140 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119832 - symbol:QRT3 "QUARTET 3" species:3702...   454  5.7e-43   1
TAIR|locus:2119817 - symbol:AT4G20040 "AT4G20040" species...   370  4.6e-34   1


>TAIR|locus:2119832 [details] [associations]
            symbol:QRT3 "QUARTET 3" species:3702 "Arabidopsis
            thaliana" [GO:0005576 "extracellular region" evidence=ISM]
            [GO:0010584 "pollen exine formation" evidence=RCA;IMP] [GO:0004650
            "polygalacturonase activity" evidence=IDA] [GO:0009556
            "microsporogenesis" evidence=IMP] [GO:0009827 "plant-type cell wall
            modification" evidence=RCA] [GO:0009860 "pollen tube growth"
            evidence=RCA] GO:GO:0005618 GO:GO:0005576 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0010584 EMBL:AL021637 EMBL:AL161552
            GO:GO:0004650 Gene3D:2.160.20.10 InterPro:IPR006626
            InterPro:IPR012334 InterPro:IPR011050 SMART:SM00710 SUPFAM:SSF51126
            GO:GO:0009556 EMBL:AY268942 EMBL:AY268941 IPI:IPI00548352
            PIR:T04889 RefSeq:NP_001078410.1 RefSeq:NP_193738.1
            UniGene:At.32754 ProteinModelPortal:O49432 SMR:O49432 PaxDb:O49432
            PRIDE:O49432 EnsemblPlants:AT4G20050.1 EnsemblPlants:AT4G20050.2
            GeneID:827750 KEGG:ath:AT4G20050 TAIR:At4g20050 eggNOG:NOG299408
            HOGENOM:HOG000030805 InParanoid:O49432 OMA:NATMTGG PhylomeDB:O49432
            ProtClustDB:CLSN2685725 Genevestigator:O49432 Uniprot:O49432
        Length = 481

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 88/143 (61%), Positives = 111/143 (77%)

Query:     1 IHGGSLRASDDFSGNGHLIELRXXXXXXLY--EYITLKELMLDSNFRGGGIAIINSIRTT 58
             I GG+LRAS+DF  + +LIEL+       Y  EYITL++L++D N+RGG IA+INS+RT+
Sbjct:   148 ISGGTLRASNDFPVDRYLIELKDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTS 207

Query:    59 VDNCYISHF-TTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVT 117
             +DNCYI+ F  T GI ++ GHETYIRNSF+GQHI  GGD  E+ FSG  IN+ GNDNAVT
Sbjct:   208 IDNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVT 267

Query:   118 DVVIFSASIGVMVQGQANMLTGL 140
             D VIFSA IGVMV GQAN+L+G+
Sbjct:   268 DTVIFSARIGVMVSGQANLLSGV 290


>TAIR|locus:2119817 [details] [associations]
            symbol:AT4G20040 "AT4G20040" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002687 Gene3D:2.160.20.10
            InterPro:IPR006626 InterPro:IPR012334 InterPro:IPR011050
            SMART:SM00710 SUPFAM:SSF51126 GO:GO:0016829 HOGENOM:HOG000030805
            ProtClustDB:CLSN2685725 UniGene:At.26265 UniGene:At.71246
            EMBL:AF428273 EMBL:AY133626 IPI:IPI00544910 RefSeq:NP_567595.1
            ProteinModelPortal:Q944M6 PRIDE:Q944M6 EnsemblPlants:AT4G20040.1
            GeneID:827749 KEGG:ath:AT4G20040 TAIR:At4g20040 InParanoid:Q944M6
            OMA:RIRITNC PhylomeDB:Q944M6 Genevestigator:Q944M6 Uniprot:Q944M6
        Length = 483

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 65/111 (58%), Positives = 85/111 (76%)

Query:    30 YEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQ 89
             YE +T ++++ DS FRGGGI +I+S R  + NCY  HFTT GI +Q GHETYI NSF+GQ
Sbjct:   190 YEDVTFQDVLFDSRFRGGGILVIDSARIRITNCYFLHFTTQGIKVQGGHETYISNSFLGQ 249

Query:    90 HINIGGDDREKDFSGIGINITGNDNAVTDVVIFSASIGVMVQGQANMLTGL 140
             H  +GGD  E+ F+G GI+I+ NDNA+TDVVIFSA IG+ + G ANM+TG+
Sbjct:   250 HSTVGGDREERGFTGTGIDISSNDNAITDVVIFSAGIGISLNGGANMVTGV 300


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.140   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       134   0.00091  102 3  11 22  0.41    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  495 (53 KB)
  Total size of DFA:  110 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.52u 0.11s 11.63t   Elapsed:  00:00:00
  Total cpu time:  11.52u 0.11s 11.63t   Elapsed:  00:00:00
  Start:  Fri May 10 12:40:53 2013   End:  Fri May 10 12:40:53 2013

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