BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045965
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49432|QRT3_ARATH Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1
Length = 481
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 114/143 (79%), Gaps = 3/143 (2%)
Query: 1 IHGGSLRASDDFSGNGHLIELRSSSSS--SLYEYITLKELMLDSNFRGGGIAIINSIRTT 58
I GG+LRAS+DF + +LIEL+ SS ++EYITL++L++D N+RGG IA+INS+RT+
Sbjct: 148 ISGGTLRASNDFPVDRYLIELKDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTS 207
Query: 59 VDNCYISHF-TTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVT 117
+DNCYI+ F T GI ++ GHETYIRNSF+GQHI GGD E+ FSG IN+ GNDNAVT
Sbjct: 208 IDNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVT 267
Query: 118 DVVIFSASIGVMVQGQANMLTGL 140
D VIFSA IGVMV GQAN+L+G+
Sbjct: 268 DTVIFSARIGVMVSGQANLLSGV 290
>sp|Q118R6|GLMU_TRIEI Bifunctional protein GlmU OS=Trichodesmium erythraeum (strain
IMS101) GN=glmU PE=3 SV=1
Length = 471
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 1 IHGGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVD 60
I G S+ S G G LIE ++ Y + + M+ N R G A +
Sbjct: 286 IRGSSIIGSGSRIGPGSLIENSHIGKNTSVLYSVISDSMVADNTRIGPYAHLRGDSQVGS 345
Query: 61 NCYISHFT-----TAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGI 105
+C I +F T G H +Y+ ++ +G+ +NIG ++ G+
Sbjct: 346 HCRIGNFVELKKATVGDRSNAAHLSYLGDATLGEKVNIGAGTITANYDGV 395
>sp|A8GLS2|LPXD_RICAH UDP-3-O-acylglucosamine N-acyltransferase OS=Rickettsia akari
(strain Hartford) GN=lpxD PE=3 SV=1
Length = 346
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 6 LRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYIS 65
+RA + + G LI+ + S + I ++ DS T NCYI
Sbjct: 88 IRAENSYFAYGKLIDFFYAPIKSYHAKIMKSAIVADS-------------ATIGKNCYIG 134
Query: 66 HFTTAGISIQDGHETYIRN-SFIGQHINIGGDDREKDFSGIGINITGND 113
H + G ++ I + SFIG+ +NIG + R + I I G+D
Sbjct: 135 HNVVIEDDVIIGDDSIIESGSFIGRGVNIGKNARIEQHVSINYAIIGDD 183
>sp|Q7U7I0|GLMU_SYNPX Bifunctional protein GlmU OS=Synechococcus sp. (strain WH8102)
GN=glmU PE=3 SV=1
Length = 450
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 4 GSLRASDDFS-GNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVDNC 62
GS R D+ G G L+E S + ++E + + G A + D C
Sbjct: 279 GSCRIGDNCRLGPGSLLENAELGSDVSVLHSVVREATVGNGVAIGPFAHLRPAADIADGC 338
Query: 63 YISHF-----TTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINIT----GND 113
I +F + G + H +YI ++ +G+++N+G ++ G+ + T G+
Sbjct: 339 RIGNFVEVKKSQVGAGSKINHLSYIGDASLGENVNVGAGTITANYDGVRKHRTVIGDGSK 398
Query: 114 NAVTDVVIFSASIGVMV 130
V++ ++G V
Sbjct: 399 TGANSVLVAPVTLGAKV 415
>sp|Q8D3J1|GLMU_WIGBR Bifunctional protein GlmU OS=Wigglesworthia glossinidia brevipalpis
GN=glmU PE=3 SV=1
Length = 461
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 29 LYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHF-----TTAGISIQDGHETYIR 83
++ Y +++ LDSN G A I+S N ++ +F T G + + GH +Y+
Sbjct: 316 IHPYSIIEDACLDSNSVIGPFAHIHSKSKIKKNVHVGNFVEIKNTIFGKNSKVGHLSYLG 375
Query: 84 NSFIGQHINIGGDDREKDFSG 104
+S IG+++NIG +F G
Sbjct: 376 DSDIGKNVNIGAGTITCNFDG 396
>sp|Q9Z179|SHCBP_MOUSE SHC SH2 domain-binding protein 1 OS=Mus musculus GN=Shcbp1 PE=1
SV=1
Length = 668
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 48 GIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNS 85
GI II+ +TT++NC + TT G++++ E +++NS
Sbjct: 446 GILIIHHGKTTLENCVLQCETT-GVTVRTSAELFMKNS 482
>sp|Q31G43|RS2_THICR 30S ribosomal protein S2 OS=Thiomicrospira crunogena (strain XCL-2)
GN=rpsB PE=3 SV=2
Length = 244
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 17 HLIELRSSSSSSLYEYITLKELMLDSNFRGG---GIAIINSIRTTVDNCYISHFTTAGIS 73
+L +L +E IT KE ++ S + + I +R D +I I+
Sbjct: 113 NLKDLEVQEQDGTFEKITKKEALMRSRQKAKLELSLGGIKDMRAMPDAIFIIDTGNEKIA 172
Query: 74 IQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVVIF-SASIGVMVQG 132
IQ+ +G + +G D D +G+ I GND+AV V ++ SA+ + +G
Sbjct: 173 IQEAKN-------LGIPV-VGVVDTNNDPNGVDYVIPGNDDAVRAVSLYLSAAADAINEG 224
Query: 133 QANMLTGL 140
+ ++ T +
Sbjct: 225 KGSITTAV 232
>sp|P00764|TRYP_SQUAC Trypsin OS=Squalus acanthias PE=1 SV=1
Length = 229
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 72 ISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVVIFSASIGVMVQ 131
IS +G ETYI +S + +H N G D + D I ++ N D++ S G
Sbjct: 62 ISANEGDETYIDSSMVIRHPNYSGYDLDNDIMLIKLSKPAALNRNVDLI--SLPTGCAYA 119
Query: 132 GQANMLTGL 140
G+ +++G
Sbjct: 120 GEMCLISGW 128
>sp|B2IU73|GLMU_NOSP7 Bifunctional protein GlmU OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=glmU PE=3 SV=1
Length = 459
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 1 IHGGSLRASDDFSGNGHLIELRSSSSSSLYEYITLK-ELMLDSNFRGGG-IAIINSIRTT 58
+ G ++ + G G LIE +S L E +T++ +++DS + G I +R
Sbjct: 277 LRGNTVIQTGSHIGPGSLIE-----NSQLAENVTVQYSVVIDSTIQAGSRIGPYAHLRGH 331
Query: 59 VD---NCYISHF-----TTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGI 105
V C + +F T G H +YI ++ +G +NIG ++ G+
Sbjct: 332 VQVGAGCRVGNFVELKNTQLGDRTNAAHLSYIGDTVVGNQVNIGAGTITANYDGV 386
>sp|B0JJ82|GLMU_MICAN Bifunctional protein GlmU OS=Microcystis aeruginosa (strain
NIES-843) GN=glmU PE=3 SV=2
Length = 450
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 1 IHGGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVD 60
+ G ++ AS G G LIE S + + + +DS R G A +
Sbjct: 277 LRGETIIASGCRIGPGSLIENSRIGSDVTVLFSVISDSQVDSGCRIGPYAHLRGEAKIGA 336
Query: 61 NCYISHF-----TTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGI 105
NC + +F ++ G H +Y+ ++ +G+ +N+G ++ G+
Sbjct: 337 NCRVGNFVEIKKSSIGNKTNIAHLSYLGDATLGEKVNVGAGTITANYDGV 386
>sp|A9BAV8|GLMU_PROM4 Bifunctional protein GlmU OS=Prochlorococcus marinus (strain MIT
9211) GN=glmU PE=3 SV=1
Length = 453
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 34 TLKELMLDSNFRGGGIAIINSIRTTVDNCYISHF-----TTAGISIQDGHETYIRNSFIG 88
TL + S+ + G A + NC I +F + G + H +YI +S +G
Sbjct: 310 TLNNCQVASHVKIGPFAHLRPETNVSSNCRIGNFVEIKKSELGQGTKVNHLSYIGDSHVG 369
Query: 89 QHINIGGDDREKDFSGIGINIT 110
H+NIG +F G N T
Sbjct: 370 CHVNIGAGTITANFDGFRKNET 391
>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3
Length = 3578
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 109 ITGNDNAVTDVVIFSASIGVMVQGQAN 135
+TG++ AVT VVI SA +G++V G +N
Sbjct: 3408 LTGHEQAVTSVVI-SAELGLVVSGSSN 3433
>sp|B1XLT6|GLMU_SYNP2 Bifunctional protein GlmU OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=glmU PE=3 SV=1
Length = 449
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 1 IHGGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVD 60
+ G SL + G G LIE +++ Y + + + N + G I +
Sbjct: 277 LRGNSLIKTGCRLGPGSLIENSVIEANTTILYSVVSDSQVGENAQIGPYTHIRGQAKVGE 336
Query: 61 NCYISHF-----TTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGI 105
C I +F +T G + H +YI ++ +G +NIG ++ G+
Sbjct: 337 QCRIGNFVEVKKSTIGNNTNMAHLSYIGDATLGAKVNIGAGTITANYDGV 386
>sp|Q92JQ7|LPXD_RICCN UDP-3-O-acylglucosamine N-acyltransferase OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=lpxD PE=3 SV=1
Length = 346
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 18/123 (14%)
Query: 6 LRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYIS 65
L A + + G LI+ + S I ++ DS T NCYI
Sbjct: 88 LHAQNPYFAYGKLIDFFYAPIKSYPAKIMKSAIVADS-------------ATIGKNCYIG 134
Query: 66 HFTTAGISIQDGHETYIR-NSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVVIFSA 124
H + G + I SFIG+ +NIG + R + I I G+D V++ A
Sbjct: 135 HNVVIEDDVIIGDNSIIEAGSFIGRGVNIGRNARIEQHVSINYAIIGDDV----VILAGA 190
Query: 125 SIG 127
IG
Sbjct: 191 KIG 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,175,318
Number of Sequences: 539616
Number of extensions: 2048366
Number of successful extensions: 5018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 4995
Number of HSP's gapped (non-prelim): 98
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)