Query 045965
Match_columns 140
No_of_seqs 35 out of 37
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 07:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13229 Beta_helix: Right han 95.8 0.017 3.8E-07 40.2 4.3 86 32-132 10-97 (158)
2 PF13229 Beta_helix: Right han 94.7 0.14 3E-06 35.7 6.0 87 33-134 34-123 (158)
3 PF07602 DUF1565: Protein of u 92.5 1 2.2E-05 38.0 8.6 81 44-134 112-198 (246)
4 PF05048 NosD: Periplasmic cop 90.0 2 4.3E-05 33.6 7.5 83 50-133 39-131 (236)
5 PF05048 NosD: Periplasmic cop 89.9 3.8 8.2E-05 32.0 9.0 104 31-137 44-160 (236)
6 PF12708 Pectate_lyase_3: Pect 87.2 10 0.00022 28.2 11.6 43 33-75 94-141 (225)
7 TIGR03805 beta_helix_1 paralle 86.6 8 0.00017 32.8 9.5 90 38-132 44-137 (314)
8 TIGR03805 beta_helix_1 paralle 80.7 13 0.00029 31.5 8.5 72 46-130 107-179 (314)
9 PLN02793 Probable polygalactur 79.9 6.9 0.00015 35.2 6.8 37 51-87 205-245 (443)
10 PLN02218 polygalacturonase ADP 77.3 9.3 0.0002 34.4 6.8 59 29-88 222-284 (431)
11 PF01696 Adeno_E1B_55K: Adenov 74.8 7 0.00015 35.3 5.4 57 29-87 119-175 (386)
12 PF00295 Glyco_hydro_28: Glyco 72.7 22 0.00047 30.1 7.6 67 27-94 120-192 (326)
13 PLN02793 Probable polygalactur 69.6 56 0.0012 29.6 9.8 68 27-95 205-278 (443)
14 cd03463 3,4-PCD_alpha Protocat 68.1 29 0.00064 27.9 7.1 92 4-97 41-146 (185)
15 PLN02188 polygalacturonase/gly 57.8 64 0.0014 28.8 7.9 59 29-88 185-247 (404)
16 PF00295 Glyco_hydro_28: Glyco 53.7 66 0.0014 27.2 7.1 58 28-87 98-160 (326)
17 PLN02188 polygalacturonase/gly 51.6 70 0.0015 28.6 7.2 60 28-89 161-225 (404)
18 PLN02218 polygalacturonase ADP 50.9 86 0.0019 28.3 7.7 60 28-89 198-262 (431)
19 COG3866 PelB Pectate lyase [Ca 50.3 88 0.0019 28.3 7.5 78 3-89 82-165 (345)
20 PLN03010 polygalacturonase 49.5 51 0.0011 29.7 6.0 38 51-88 185-226 (409)
21 PLN02155 polygalacturonase 49.4 79 0.0017 28.2 7.2 66 29-95 175-246 (394)
22 TIGR03804 para_beta_helix para 47.5 38 0.00082 20.2 3.5 38 48-86 1-38 (44)
23 PLN03010 polygalacturonase 47.3 1.2E+02 0.0026 27.3 8.0 56 29-85 187-246 (409)
24 PF13915 DUF4210: Domain of un 46.3 19 0.0004 25.4 2.2 33 3-35 11-43 (66)
25 PLN02155 polygalacturonase 44.4 1.9E+02 0.0042 25.8 8.8 59 28-88 151-214 (394)
26 smart00710 PbH1 Parallel beta- 44.0 25 0.00054 17.5 2.0 22 56-77 3-24 (26)
27 TIGR03808 RR_plus_rpt_1 twin-a 40.6 72 0.0016 29.7 5.7 59 29-87 113-176 (455)
28 PF12708 Pectate_lyase_3: Pect 38.1 1.1E+02 0.0025 22.6 5.6 24 105-128 200-224 (225)
29 PLN03003 Probable polygalactur 37.2 1.3E+02 0.0028 27.7 6.7 58 29-87 168-229 (456)
30 PF14592 Chondroitinas_B: Chon 37.0 67 0.0014 29.5 4.9 62 56-122 200-281 (425)
31 cd00421 intradiol_dioxygenase 35.7 1.9E+02 0.0042 21.8 6.9 92 4-98 16-116 (146)
32 smart00303 GPS G-protein-coupl 33.4 55 0.0012 20.5 2.7 33 42-75 13-45 (49)
33 COG5434 PGU1 Endopygalactoruna 33.2 1.3E+02 0.0028 28.4 6.2 64 27-91 266-343 (542)
34 PF13508 Acetyltransf_7: Acety 32.8 19 0.00041 23.1 0.5 24 32-55 26-51 (79)
35 PF03718 Glyco_hydro_49: Glyco 30.6 99 0.0021 29.7 5.0 83 27-127 330-416 (582)
36 PF15589 Imm12: Immunity prote 30.0 28 0.00062 27.9 1.2 29 36-65 114-143 (155)
37 PF07581 Glug: The GLUG motif; 28.8 78 0.0017 18.3 2.7 24 43-66 2-25 (28)
38 cd03459 3,4-PCD Protocatechuat 28.3 2.9E+02 0.0063 21.6 6.7 93 4-97 20-126 (158)
39 TIGR03808 RR_plus_rpt_1 twin-a 25.6 3.5E+02 0.0075 25.3 7.5 78 43-132 236-315 (455)
40 COG2088 SpoVG Uncharacterized 25.0 45 0.00098 25.1 1.4 22 55-80 21-42 (95)
41 PF07157 DNA_circ_N: DNA circu 24.9 25 0.00055 25.8 0.1 20 35-54 1-20 (93)
42 PLN03003 Probable polygalactur 21.9 2.4E+02 0.0052 26.0 5.7 59 28-88 144-207 (456)
43 COG3498 Phage tail tube protei 21.6 21 0.00045 29.3 -0.9 22 29-50 22-44 (169)
No 1
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=95.80 E-value=0.017 Score=40.24 Aligned_cols=86 Identities=24% Similarity=0.424 Sum_probs=47.8
Q ss_pred cceeeeeeeccccccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeeeeeecCCCCcccceeEEEEee-
Q 045965 32 YITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINIT- 110 (140)
Q Consensus 32 ~It~rdlllD~~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~~t~ggd~~e~~fsgtaI~l~- 110 (140)
.+++++..|... .+-|+.+.++-...|.||-|.. ...||.++..-+..|++|.+-+.. .+|.+.
T Consensus 10 ~~~i~~~~i~~~-~~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-------------~~i~~~~ 74 (158)
T PF13229_consen 10 NVTIRNCTISNN-GGDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-------------SGIYVSG 74 (158)
T ss_dssp C-EEESEEEESS-SSECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-------------EEEECCS
T ss_pred CeEEeeeEEEeC-CCeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-------------ceEEEEe
Confidence 355666555544 4556666666666777777777 677777777777777777665443 333333
Q ss_pred CCCceeeEEEEEeeee-eEEEec
Q 045965 111 GNDNAVTDVVIFSASI-GVMVQG 132 (140)
Q Consensus 111 gNDn~vtdvvIfsA~i-Gv~v~g 132 (140)
+++..+.+..|....- ||.+..
T Consensus 75 ~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 75 SSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp -CS-EEES-EEECSSS-SCE-TC
T ss_pred cCCceecCcEEEcCCCccEEEec
Confidence 4466777777766655 777653
No 2
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=94.66 E-value=0.14 Score=35.69 Aligned_cols=87 Identities=23% Similarity=0.365 Sum_probs=44.2
Q ss_pred ceeeeeeeccccccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeeeeeecCCCCcccceeEEEEee--
Q 045965 33 ITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINIT-- 110 (140)
Q Consensus 33 It~rdlllD~~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~~t~ggd~~e~~fsgtaI~l~-- 110 (140)
+++++-.|.. .+-|+.+-+.-...+.+|+|..-. .|+.+..+....|++|-+-+.-.. ||.+.
T Consensus 34 ~~i~n~~i~~--~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~i~~~~i~~~~~~------------gi~~~~~ 98 (158)
T PF13229_consen 34 ITIENCTISN--GGYGIYVSGGSNVTISNNTISDNG-SGIYVSGSSNITIENNRIENNGDY------------GIYISNS 98 (158)
T ss_dssp SEEES-EEES--STTSEEEECCES-EEES-EEES-S-EEEECCS-CS-EEES-EEECSSS-------------SCE-TCE
T ss_pred eEEECeEEEC--CCcEEEEecCCCeEEECeEEEEcc-ceEEEEecCCceecCcEEEcCCCc------------cEEEecc
Confidence 5666555555 666676766667777777777655 677777777777766665444211 34443
Q ss_pred CCCceeeEEEEEeee-eeEEEeccc
Q 045965 111 GNDNAVTDVVIFSAS-IGVMVQGQA 134 (140)
Q Consensus 111 gNDn~vtdvvIfsA~-iGv~v~g~A 134 (140)
+.+..|.+-.+.... -|+.+....
T Consensus 99 ~~~~~i~~n~~~~~~~~gi~~~~~~ 123 (158)
T PF13229_consen 99 SSNVTIENNTIHNNGGSGIYLEGGS 123 (158)
T ss_dssp ECS-EEES-EEECCTTSSCEEEECC
T ss_pred CCCEEEEeEEEEeCcceeEEEECCC
Confidence 335555555555544 555554443
No 3
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=92.53 E-value=1 Score=38.00 Aligned_cols=81 Identities=30% Similarity=0.427 Sum_probs=53.3
Q ss_pred cccceEEEEceeeeeeceeEEeeeecceEEEecCc--eeEEeeeeeeeeeeecCCCCcccceeEEEEeeCC----Cceee
Q 045965 44 FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGH--ETYIRNSFIGQHINIGGDDREKDFSGIGINITGN----DNAVT 117 (140)
Q Consensus 44 ~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GH--Et~I~~sflGq~~t~ggd~~e~~fsgtaI~l~gN----Dn~vt 117 (140)
.||.|+.|-.+ -.+|.||.|.|...+||.|.+-+ ..+-.+.+-|-.++ +..+||.+..+ +|.|.
T Consensus 112 ~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~---------~~~~Gi~i~~~~~~~~n~I~ 181 (246)
T PF07602_consen 112 ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIY---------FNKTGISISDNAAPVENKIE 181 (246)
T ss_pred CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEE---------ecCcCeEEEcccCCccceee
Confidence 69999998666 89999999999999999985543 22212222222222 33334444433 45677
Q ss_pred EEEEEeeeeeEEEeccc
Q 045965 118 DVVIFSASIGVMVQGQA 134 (140)
Q Consensus 118 dvvIfsA~iGv~v~g~A 134 (140)
+=+|.-=.+||.+.++|
T Consensus 182 NN~I~~N~~Gi~~~~~~ 198 (246)
T PF07602_consen 182 NNIIENNNIGIVAIGDA 198 (246)
T ss_pred ccEEEeCCcCeEeeccC
Confidence 77787777899988766
No 4
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=89.98 E-value=2 Score=33.56 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=45.7
Q ss_pred EEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeeee---eecCCCC-c---ccc--eeEEEEeeCC-CceeeEE
Q 045965 50 AIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHI---NIGGDDR-E---KDF--SGIGINITGN-DNAVTDV 119 (140)
Q Consensus 50 ~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~~---t~ggd~~-e---~~f--sgtaI~l~gN-Dn~vtdv 119 (140)
.+.++...+|.+|-+.+- ..||.+...+..-|+++.+-... .+..... . ..+ .+.||.|.+. ++.|++=
T Consensus 39 ~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~s~~~~I~~N 117 (236)
T PF05048_consen 39 YVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNNGYGIYLMGSSNNTISNNTISNNGYGIYLYGSSNNTISNN 117 (236)
T ss_pred EEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEccCCCEEEEcCCCcEEECCEecCCCceEEEeeCCceEEECc
Confidence 555555555555554444 55555555555555555444321 1111110 0 000 1127777755 4689988
Q ss_pred EEEeeeeeEEEecc
Q 045965 120 VIFSASIGVMVQGQ 133 (140)
Q Consensus 120 vIfsA~iGv~v~g~ 133 (140)
.|.....||.+...
T Consensus 118 ~i~~~~~GI~l~~s 131 (236)
T PF05048_consen 118 TISNNGYGIYLSSS 131 (236)
T ss_pred EEeCCCEEEEEEeC
Confidence 88899999998874
No 5
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=89.94 E-value=3.8 Score=31.99 Aligned_cols=104 Identities=23% Similarity=0.364 Sum_probs=59.7
Q ss_pred ecceeeeeeeccccccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeee---eeecCCCC----ccc--
Q 045965 31 EYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQH---INIGGDDR----EKD-- 101 (140)
Q Consensus 31 e~It~rdlllD~~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~---~t~ggd~~----e~~-- 101 (140)
..+++++..+..+ .-|+.+..+-...|.+|.+.+-. .||.+....+.-|+++-+-.. +.+-+... ...
T Consensus 44 ~~~~I~~n~i~~~--~~GI~~~~s~~~~i~~n~i~~n~-~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~s~~~~I~~N~i~ 120 (236)
T PF05048_consen 44 DNNTISNNTISNN--RYGIHLMGSSNNTIENNTISNNG-YGIYLMGSSNNTISNNTISNNGYGIYLYGSSNNTISNNTIS 120 (236)
T ss_pred CCeEEEeeEEECC--CeEEEEEccCCCEEEeEEEEccC-CCEEEEcCCCcEEECCEecCCCceEEEeeCCceEEECcEEe
Confidence 4455555555444 44566666666666666666555 666666655445544433221 11111110 011
Q ss_pred ceeEEEEeeC-CCceeeEEEEEee-eeeEE-Ee-cccccc
Q 045965 102 FSGIGINITG-NDNAVTDVVIFSA-SIGVM-VQ-GQANML 137 (140)
Q Consensus 102 fsgtaI~l~g-NDn~vtdvvIfsA-~iGv~-v~-g~AN~l 137 (140)
-...||.|.+ .++.|++=.|..- ..|+. +. ++.|.+
T Consensus 121 ~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I 160 (236)
T PF05048_consen 121 NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTI 160 (236)
T ss_pred CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEE
Confidence 3567888887 6899999888888 89998 43 334444
No 6
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=87.21 E-value=10 Score=28.20 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=32.2
Q ss_pred ceeeeeeeccccccc-----eEEEEceeeeeeceeEEeeeecceEEEe
Q 045965 33 ITLKELMLDSNFRGG-----GIAIINSIRTTVDNCYISHFTTAGISIQ 75 (140)
Q Consensus 33 It~rdlllD~~~RGG-----Gi~vins~r~~i~ncy~~hF~t~GIlv~ 75 (140)
+++++|.||++.... |+..-.+..+.|+||.+.++...|+.++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEEE
Confidence 559999999976544 4555567789999999998877777777
No 7
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=86.63 E-value=8 Score=32.85 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=56.9
Q ss_pred eeeccccc--cceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeeeeeecCCCCcccceeEEEEeeC-CCc
Q 045965 38 LMLDSNFR--GGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITG-NDN 114 (140)
Q Consensus 38 lllD~~~R--GGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~~t~ggd~~e~~fsgtaI~l~g-NDn 114 (140)
-++|.+.+ ++..+.+.+-++.|.++.+.+-...||.+++.+..-|+++-+.- .+++... -.+-||.+.. +|.
T Consensus 44 tvid~~~~~~~~~~i~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~----~~~~~~~-~~~~GI~~~~s~~v 118 (314)
T TIGR03805 44 TILDFSGQVGGAEGLLVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEW----TGGPKSS-NGAYGIYPVESTNV 118 (314)
T ss_pred cEEecccCCCCCceEEEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEe----ccCcccc-CCcceEEEeccCCE
Confidence 45665443 34455667778888888888887889999988888888885521 1122221 1345566653 466
Q ss_pred eeeEEEEEeee-eeEEEec
Q 045965 115 AVTDVVIFSAS-IGVMVQG 132 (140)
Q Consensus 115 ~vtdvvIfsA~-iGv~v~g 132 (140)
.|.|..|..+. .||.+..
T Consensus 119 ~I~~n~i~g~~d~GIyv~~ 137 (314)
T TIGR03805 119 LVEDSYVRGASDAGIYVGQ 137 (314)
T ss_pred EEECCEEECCCcccEEECC
Confidence 67777776654 3666543
No 8
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=80.71 E-value=13 Score=31.52 Aligned_cols=72 Identities=22% Similarity=0.378 Sum_probs=40.6
Q ss_pred cceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeeeeeecCCCCcccceeEEEEee-CCCceeeEEEEEee
Q 045965 46 GGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINIT-GNDNAVTDVVIFSA 124 (140)
Q Consensus 46 GGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~~t~ggd~~e~~fsgtaI~l~-gNDn~vtdvvIfsA 124 (140)
+=||....|-++.|.+|++.+-...||.+...+..-|+++.+-. ..-||.++ ++|+.|.|=.+.-=
T Consensus 107 ~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v~nN~~~~-------------n~~GI~i~~S~~~~v~~N~~~~N 173 (314)
T TIGR03805 107 AYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEE-------------NVAGIEIENSQNADVYNNIATNN 173 (314)
T ss_pred cceEEEeccCCEEEECCEEECCCcccEEECCCCCeEEECCEEcc-------------CcceEEEEecCCcEEECCEEecc
Confidence 33555555556666666666555556666666666666655411 12355555 44666666666655
Q ss_pred eeeEEE
Q 045965 125 SIGVMV 130 (140)
Q Consensus 125 ~iGv~v 130 (140)
..|+++
T Consensus 174 ~~Gi~v 179 (314)
T TIGR03805 174 TGGILV 179 (314)
T ss_pred ceeEEE
Confidence 567666
No 9
>PLN02793 Probable polygalacturonase
Probab=79.92 E-value=6.9 Score=35.23 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=18.5
Q ss_pred EEceeeeeeceeEEe----eeecceEEEecCceeEEeeeee
Q 045965 51 IINSIRTTVDNCYIS----HFTTAGISIQDGHETYIRNSFI 87 (140)
Q Consensus 51 vins~r~~i~ncy~~----hF~t~GIlv~~GHEt~I~~sfl 87 (140)
+.++..+.|++..|. ..+|+||-+.+-+.+.|++|++
T Consensus 205 ~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I 245 (443)
T PLN02793 205 FTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIV 245 (443)
T ss_pred EEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEE
Confidence 344444455554443 2455555555555555555544
No 10
>PLN02218 polygalacturonase ADPG
Probab=77.31 E-value=9.3 Score=34.38 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=33.9
Q ss_pred eeecceeeeeeeccc---cccceEEEEceeeeeeceeEEeeeecceEEEecCce-eEEeeeeee
Q 045965 29 LYEYITLKELMLDSN---FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHE-TYIRNSFIG 88 (140)
Q Consensus 29 ~ye~It~rdlllD~~---~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHE-t~I~~sflG 88 (140)
..+++++++|..++. ...=||=+.+|-.+.|.||+|.-= -+.|.|++|-| ..|+||+.+
T Consensus 222 ~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I~n~~c~ 284 (431)
T PLN02218 222 KCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQINDITCG 284 (431)
T ss_pred ceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEEEeEEEE
Confidence 445666666666542 345566666666666666666522 34566666553 566666654
No 11
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=74.82 E-value=7 Score=35.32 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=47.2
Q ss_pred eeecceeeeeeeccccccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeee
Q 045965 29 LYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFI 87 (140)
Q Consensus 29 ~ye~It~rdlllD~~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sfl 87 (140)
.-+.+||.|+.|+..=.=.|+...+.-.+.|.+|+|.+|.-.=+..+.|+| +|.|-|
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~~~~--VrGC~F 175 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFHGTCLESWAGGE--VRGCTF 175 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCcceeEEEcCCcE--EeeeEE
Confidence 467899999999987666678888888999999999999988898888877 455533
No 12
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=72.69 E-value=22 Score=30.07 Aligned_cols=67 Identities=24% Similarity=0.410 Sum_probs=50.3
Q ss_pred cceeecceeeeeeeccc---cccceEEEEceeeeeeceeEEeeeecceEEEecCc-eeEEeeeeeeee--eeec
Q 045965 27 SSLYEYITLKELMLDSN---FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGH-ETYIRNSFIGQH--INIG 94 (140)
Q Consensus 27 ~~~ye~It~rdlllD~~---~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GH-Et~I~~sflGq~--~t~g 94 (140)
-...++++++++.+++. +..-||=+..+..+.|.||+|.-- -+.|.++++. ...|+||.+..- +.+|
T Consensus 120 ~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~ghGisiG 192 (326)
T PF00295_consen 120 INDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSGGHGISIG 192 (326)
T ss_dssp EESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEESSSEEEEE
T ss_pred EEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEeccccceee
Confidence 34568889999988764 457799999999999999998633 5788888877 888999988542 3454
No 13
>PLN02793 Probable polygalacturonase
Probab=69.57 E-value=56 Score=29.55 Aligned_cols=68 Identities=24% Similarity=0.244 Sum_probs=52.5
Q ss_pred cceeecceeeeeeecc---ccccceEEEEceeeeeeceeEEeeeecceEEEec-CceeEEeeeeeeee--eeecC
Q 045965 27 SSLYEYITLKELMLDS---NFRGGGIAIINSIRTTVDNCYISHFTTAGISIQD-GHETYIRNSFIGQH--INIGG 95 (140)
Q Consensus 27 ~~~ye~It~rdlllD~---~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~-GHEt~I~~sflGq~--~t~gg 95 (140)
-...+++++++|.+++ +...=||=+.+|-.+.|.||+|.- .-+.|.+++ .+...|+|+..+.- +.+|.
T Consensus 205 ~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-gDDcIaik~~s~nI~I~n~~c~~GhGisIGS 278 (443)
T PLN02793 205 FTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-GDDCISIVGNSSRIKIRNIACGPGHGISIGS 278 (443)
T ss_pred EEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-CCCeEEecCCcCCEEEEEeEEeCCccEEEec
Confidence 3456889999999987 467789999999999999999873 356788874 67788999887432 35553
No 14
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=68.06 E-value=29 Score=27.94 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=59.1
Q ss_pred ceeeecCCCCCCCeEEEeccCCCcceeec--ceeeeeeeccccccceEEEEcee-eee----eceeEEe---eeecceE-
Q 045965 4 GSLRASDDFSGNGHLIELRSSSSSSLYEY--ITLKELMLDSNFRGGGIAIINSI-RTT----VDNCYIS---HFTTAGI- 72 (140)
Q Consensus 4 GTLRAs~~Fp~D~~Liel~~~~s~~~ye~--It~rdlllD~~~RGGGi~vins~-r~~----i~ncy~~---hF~t~GI- 72 (140)
|+++..+-=|--+-+||+|..++.=.|.. -.... .|++||+=|..+-|.- |.+ .+..|-. +.-.-.|
T Consensus 41 G~V~D~~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~--~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH 118 (185)
T cd03463 41 GRVYDGDGAPVPDAMLEIWQADAAGRYAHPADSRRR--LDPGFRGFGRVATDADGRFSFTTVKPGAVPGRDGAGQAPHIN 118 (185)
T ss_pred EEEECCCCCCCCCCEEEEEcCCCCCccCCcCCcccc--cCCCCCcEEEEEECCCCCEEEEEEcCCCcCCCCCCCcCCeEE
Confidence 56666666699999999999997333332 22222 7899999999998875 333 3566641 0122233
Q ss_pred -EEe-cCc-eeEEeeeeeeeeeeecCCC
Q 045965 73 -SIQ-DGH-ETYIRNSFIGQHINIGGDD 97 (140)
Q Consensus 73 -lv~-~GH-Et~I~~sflGq~~t~ggd~ 97 (140)
+|. .|+ +.++.+.||-....--.||
T Consensus 119 ~~V~~~g~~~~L~Tqlyf~~d~~~~~D~ 146 (185)
T cd03463 119 VWVFARGLLKHLFTRIYFPDEEANAADP 146 (185)
T ss_pred EEEECCCcccceEEeEecCCCcccccCc
Confidence 343 488 9999999987654333444
No 15
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=57.77 E-value=64 Score=28.85 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=38.8
Q ss_pred eeecceeeeeeeccc---cccceEEEEceeeeeeceeEEeeeecceEEEecC-ceeEEeeeeee
Q 045965 29 LYEYITLKELMLDSN---FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDG-HETYIRNSFIG 88 (140)
Q Consensus 29 ~ye~It~rdlllD~~---~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~G-HEt~I~~sflG 88 (140)
..+++++++|.+++. ...=||-+.+|-.+.|.||+|.-- -+.|.+++| +...|+|++.+
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~G-DDcIaiksg~~nI~I~n~~c~ 247 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTG-DDCISIGQGNSQVTITRIRCG 247 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCC-CcEEEEccCCccEEEEEEEEc
Confidence 456777777777752 355577777777777777777643 347777654 35667776653
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=53.74 E-value=66 Score=27.22 Aligned_cols=58 Identities=28% Similarity=0.400 Sum_probs=44.4
Q ss_pred ceeecceeeeeee-ccccccceEEEEceeeeeeceeEEee----eecceEEEecCceeEEeeeee
Q 045965 28 SLYEYITLKELML-DSNFRGGGIAIINSIRTTVDNCYISH----FTTAGISIQDGHETYIRNSFI 87 (140)
Q Consensus 28 ~~ye~It~rdlll-D~~~RGGGi~vins~r~~i~ncy~~h----F~t~GIlv~~GHEt~I~~sfl 87 (140)
...+.++++++.| ||.+. -+.+.++..+.|++..|.. .+++||-+.+-.-+.|+||++
T Consensus 98 ~~~~~~~i~~i~~~nsp~w--~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i 160 (326)
T PF00295_consen 98 NNCKNVTIEGITIRNSPFW--HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFI 160 (326)
T ss_dssp EEEEEEEEESEEEES-SSE--SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEE
T ss_pred eeecceEEEeeEecCCCee--EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeec
Confidence 5566777777754 55544 3667889999999999975 589999999999999999998
No 17
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=51.55 E-value=70 Score=28.57 Aligned_cols=60 Identities=25% Similarity=0.291 Sum_probs=43.2
Q ss_pred ceeecceeeeeee-ccccccceEEEEceeeeeeceeEEee----eecceEEEecCceeEEeeeeeee
Q 045965 28 SLYEYITLKELML-DSNFRGGGIAIINSIRTTVDNCYISH----FTTAGISIQDGHETYIRNSFIGQ 89 (140)
Q Consensus 28 ~~ye~It~rdlll-D~~~RGGGi~vins~r~~i~ncy~~h----F~t~GIlv~~GHEt~I~~sflGq 89 (140)
+.++++.++++.| +|.+- -+.+..+..+.|++..|.- -+|+||-+.+.....|++|++--
T Consensus 161 ~~~~nv~i~gitl~nSp~w--~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~ 225 (404)
T PLN02188 161 VNMNNTVVRGITSVNSKFF--HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT 225 (404)
T ss_pred EeeeeEEEeCeEEEcCCCe--EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC
Confidence 4555666666643 33332 3556777788888888764 59999999999999999998753
No 18
>PLN02218 polygalacturonase ADPG
Probab=50.87 E-value=86 Score=28.31 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=47.6
Q ss_pred ceeecceeeeeee-ccccccceEEEEceeeeeeceeEEee----eecceEEEecCceeEEeeeeeee
Q 045965 28 SLYEYITLKELML-DSNFRGGGIAIINSIRTTVDNCYISH----FTTAGISIQDGHETYIRNSFIGQ 89 (140)
Q Consensus 28 ~~ye~It~rdlll-D~~~RGGGi~vins~r~~i~ncy~~h----F~t~GIlv~~GHEt~I~~sflGq 89 (140)
+..+++++++|.| |+.+- -+.+.++-.+.|++..|.- .+|+||-+.+-..+.|++|++.-
T Consensus 198 ~~~~nv~I~gitl~nSp~w--~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t 262 (431)
T PLN02218 198 YNSKSLIVKNLRVRNAQQI--QISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT 262 (431)
T ss_pred EccccEEEeCeEEEcCCCE--EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec
Confidence 4556777777765 66554 4667788889999998865 59999999999999999999864
No 19
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=50.30 E-value=88 Score=28.25 Aligned_cols=78 Identities=24% Similarity=0.372 Sum_probs=57.8
Q ss_pred cceeeecCCCCCCCeEEEeccCCCcceeecceeeeeeeccccccceEEEEceeeeeeceeEEeeee-----cceEEE-ec
Q 045965 3 GGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFT-----TAGISI-QD 76 (140)
Q Consensus 3 gGTLRAs~~Fp~D~~Liel~~~~s~~~ye~It~rdlllD~~~RGGGi~vins~r~~i~ncy~~hF~-----t~GIlv-~~ 76 (140)
.||+.+|. |+|- ++++. -..+.||--+==|+.--|||+.+.++-.+=|.|.=|-||- .+.|-+ .+
T Consensus 82 ~Gti~~s~--ps~~-k~~ik------i~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~ 152 (345)
T COG3866 82 KGTITAST--PSDK-KITIK------IGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDD 152 (345)
T ss_pred cceEeccC--CCCc-eEEEe------eccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccC
Confidence 57777775 5554 56652 2334556555567777899999999888888999999996 588999 88
Q ss_pred CceeEEeeeeeee
Q 045965 77 GHETYIRNSFIGQ 89 (140)
Q Consensus 77 GHEt~I~~sflGq 89 (140)
+|--+|+.|=|=-
T Consensus 153 ~~nIWIDH~tf~~ 165 (345)
T COG3866 153 GHNIWIDHNTFSG 165 (345)
T ss_pred CeEEEEEeeEecc
Confidence 9999998776544
No 20
>PLN03010 polygalacturonase
Probab=49.51 E-value=51 Score=29.66 Aligned_cols=38 Identities=24% Similarity=0.159 Sum_probs=23.3
Q ss_pred EEceeeeeeceeEEee----eecceEEEecCceeEEeeeeee
Q 045965 51 IINSIRTTVDNCYISH----FTTAGISIQDGHETYIRNSFIG 88 (140)
Q Consensus 51 vins~r~~i~ncy~~h----F~t~GIlv~~GHEt~I~~sflG 88 (140)
+.++..+.|++..+.- .+|+||-+.+...+.|++|++.
T Consensus 185 i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~ 226 (409)
T PLN03010 185 IKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQ 226 (409)
T ss_pred EeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEe
Confidence 3444455566655543 5677777777677777777654
No 21
>PLN02155 polygalacturonase
Probab=49.42 E-value=79 Score=28.20 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=42.4
Q ss_pred eeecceeeeeeeccc---cccceEEEEceeeeeeceeEEeeeecceEEEecC-ceeEEeeeeeee--eeeecC
Q 045965 29 LYEYITLKELMLDSN---FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDG-HETYIRNSFIGQ--HINIGG 95 (140)
Q Consensus 29 ~ye~It~rdlllD~~---~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~G-HEt~I~~sflGq--~~t~gg 95 (140)
..++++++++.+++. ..-=||=+..|..+.|.||+|..= -+.|.+++| +...|+++-.+. -+.+|.
T Consensus 175 ~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~g-DDcIaik~gs~nI~I~n~~c~~GhGisIGS 246 (394)
T PLN02155 175 GCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTG-DDCVAIGPGTRNFLITKLACGPGHGVSIGS 246 (394)
T ss_pred CeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecC-CceEEcCCCCceEEEEEEEEECCceEEecc
Confidence 457777777777763 344577777777888888877643 357777776 456777755542 244544
No 22
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=47.46 E-value=38 Score=20.18 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=29.2
Q ss_pred eEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeee
Q 045965 48 GIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSF 86 (140)
Q Consensus 48 Gi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sf 86 (140)
||.+-+|.+.+|.++-+.+ ..+||.++.-+...|++.-
T Consensus 1 GI~l~~s~~~~i~~N~i~~-~~~GI~~~~s~~n~i~~N~ 38 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN-NSYGIYLTDSSNNTLSNNT 38 (44)
T ss_pred CEEEEecCCCEEECcEEeC-CCCEEEEEeCCCCEeECCE
Confidence 6788888888898777764 5559999988877776543
No 23
>PLN03010 polygalacturonase
Probab=47.28 E-value=1.2e+02 Score=27.34 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=43.3
Q ss_pred eeecceeeeeeecc---ccccceEEEEceeeeeeceeEEeeeecceEEEecCc-eeEEeee
Q 045965 29 LYEYITLKELMLDS---NFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGH-ETYIRNS 85 (140)
Q Consensus 29 ~ye~It~rdlllD~---~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GH-Et~I~~s 85 (140)
..+++++++|.+++ +...=||=+..|-.+.|.||+|..- -+.|.+++|- ...|++.
T Consensus 187 ~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~ 246 (409)
T PLN03010 187 TCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQI 246 (409)
T ss_pred ccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEE
Confidence 55778888888887 3566788888999999999998865 6889999873 5555543
No 24
>PF13915 DUF4210: Domain of unknown function (DUF4210)
Probab=46.30 E-value=19 Score=25.40 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=26.0
Q ss_pred cceeeecCCCCCCCeEEEeccCCCcceeeccee
Q 045965 3 GGSLRASDDFSGNGHLIELRSSSSSSLYEYITL 35 (140)
Q Consensus 3 gGTLRAs~~Fp~D~~Liel~~~~s~~~ye~It~ 35 (140)
.|.+.+.|.-|-|+|+.|++...+..|-.-+++
T Consensus 11 ~GRms~~ps~~i~GF~a~igvsG~~~cP~h~~l 43 (66)
T PF13915_consen 11 SGRMSTGPSKPIDGFTAEIGVSGSGFCPPHVKL 43 (66)
T ss_pred cCccccCCCcccCCeEEEEEccccccCCCcEEe
Confidence 577888899999999999999887655544443
No 25
>PLN02155 polygalacturonase
Probab=44.45 E-value=1.9e+02 Score=25.83 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=43.5
Q ss_pred ceeecceeeeeee-ccccccceEEEEceeeeeeceeEEee----eecceEEEecCceeEEeeeeee
Q 045965 28 SLYEYITLKELML-DSNFRGGGIAIINSIRTTVDNCYISH----FTTAGISIQDGHETYIRNSFIG 88 (140)
Q Consensus 28 ~~ye~It~rdlll-D~~~RGGGi~vins~r~~i~ncy~~h----F~t~GIlv~~GHEt~I~~sflG 88 (140)
..++.++++++.| +|.+ =-+.+.++..+.|++..|.- .+|+||-+.+...+.|++|++.
T Consensus 151 ~~~~nv~i~gitl~nSp~--w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~ 214 (394)
T PLN02155 151 NSAKDVIISGVKSMNSQV--SHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQ 214 (394)
T ss_pred EEeeeEEEECeEEEcCCC--eEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEe
Confidence 4556677777655 3322 12445677788888888864 6899999999999999999764
No 26
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=44.03 E-value=25 Score=17.47 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=16.8
Q ss_pred eeeeceeEEeeeecceEEEecC
Q 045965 56 RTTVDNCYISHFTTAGISIQDG 77 (140)
Q Consensus 56 r~~i~ncy~~hF~t~GIlv~~G 77 (140)
++.|.+|.|.+-...||.+...
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~~~ 24 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIGGX 24 (26)
T ss_pred CEEEECCEEEeCCCCcEEEecc
Confidence 5677888888887778887653
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=40.64 E-value=72 Score=29.65 Aligned_cols=59 Identities=22% Similarity=0.201 Sum_probs=39.1
Q ss_pred eeecceeeeeeeccc-----cccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeee
Q 045965 29 LYEYITLKELMLDSN-----FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFI 87 (140)
Q Consensus 29 ~ye~It~rdlllD~~-----~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sfl 87 (140)
.-+++|++.+.+|.+ .|=.||.+.++-+++|.+|-+..=--+||.+++..-..++|..-
T Consensus 113 ~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~ 176 (455)
T TIGR03808 113 GADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTIT 176 (455)
T ss_pred cCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEe
Confidence 346777777777764 46667888777788888887765444777777776333333333
No 28
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=38.14 E-value=1.1e+02 Score=22.57 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=12.0
Q ss_pred EEEEeeCCCc-eeeEEEEEeeeeeE
Q 045965 105 IGINITGNDN-AVTDVVIFSASIGV 128 (140)
Q Consensus 105 taI~l~gNDn-~vtdvvIfsA~iGv 128 (140)
+||.+.+..+ -|.++.|--...||
T Consensus 200 ~gi~i~~~~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 200 NGINIEGGSNIIISNNTIENCDDGI 224 (225)
T ss_dssp ESEEEEECSEEEEEEEEEESSSEEE
T ss_pred eeEEEECCeEEEEEeEEEECCccCc
Confidence 5566655443 34455555554443
No 29
>PLN03003 Probable polygalacturonase At3g15720
Probab=37.24 E-value=1.3e+02 Score=27.71 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=32.2
Q ss_pred eeecceeeeeeecc---ccccceEEEEceeeeeeceeEEeeeecceEEEecCc-eeEEeeeee
Q 045965 29 LYEYITLKELMLDS---NFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGH-ETYIRNSFI 87 (140)
Q Consensus 29 ~ye~It~rdlllD~---~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GH-Et~I~~sfl 87 (140)
.++++++++|.+++ +...=||=+..|-.+.|.||+|.- .-+.|.+++|- ...|+|+..
T Consensus 168 ~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-GDDCIaiksgs~NI~I~n~~c 229 (456)
T PLN03003 168 ECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIAT-GDDCIAINSGTSNIHISGIDC 229 (456)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEec-CCCeEEeCCCCccEEEEeeEE
Confidence 34556666666654 344455556566666666665542 23556666653 456666654
No 30
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=37.00 E-value=67 Score=29.50 Aligned_cols=62 Identities=27% Similarity=0.372 Sum_probs=37.0
Q ss_pred eeeeceeEEeee--ecceEEEecCceeEEeeeeeeee----------e------eec-CCCCcccceeE-EEEeeCCCce
Q 045965 56 RTTVDNCYISHF--TTAGISIQDGHETYIRNSFIGQH----------I------NIG-GDDREKDFSGI-GINITGNDNA 115 (140)
Q Consensus 56 r~~i~ncy~~hF--~t~GIlv~~GHEt~I~~sflGq~----------~------t~g-gd~~e~~fsgt-aI~l~gNDn~ 115 (140)
++.|.++||.+- +.+=|.+++++-+|-.|.|+.-. - -.| |++ .+| ||++.+.||.
T Consensus 200 ~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Ntf~es~G~ltlRHGn~n~V~gN~FiGng~~-----~~tGGIRIi~~~H~ 274 (425)
T PF14592_consen 200 NTTVENNLFERCDGEVEIISVKSSDNTIRNNTFRESQGSLTLRHGNRNTVEGNVFIGNGVK-----EGTGGIRIIGEGHT 274 (425)
T ss_dssp --EEES-EEEEE-SSSEEEEEESBT-EEES-EEES-SSEEEEEE-SS-EEES-EEEE-SSS-----S-B--EEE-SBS-E
T ss_pred ceeeecchhhhcCCceeEEEeecCCceEeccEEEeccceEEEecCCCceEeccEEecCCCc-----CCCCceEEecCCcE
Confidence 677888999888 56679999999999999998533 1 112 112 245 8999999998
Q ss_pred eeEEEEE
Q 045965 116 VTDVVIF 122 (140)
Q Consensus 116 vtdvvIf 122 (140)
|++=-+.
T Consensus 275 I~nNY~~ 281 (425)
T PF14592_consen 275 IYNNYFE 281 (425)
T ss_dssp EES-EEE
T ss_pred EEcceee
Confidence 8876553
No 31
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=35.68 E-value=1.9e+02 Score=21.80 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=59.8
Q ss_pred ceeeecCCCCCCCeEEEeccCCCcceeecceeeeeeeccccccceEEEEcee-eeee----ceeEEeeeecceE--EEe-
Q 045965 4 GSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSI-RTTV----DNCYISHFTTAGI--SIQ- 75 (140)
Q Consensus 4 GTLRAs~~Fp~D~~Liel~~~~s~~~ye~It~rdlllD~~~RGGGi~vins~-r~~i----~ncy~~hF~t~GI--lv~- 75 (140)
|+++-.+.=|.-+-+||+|..+..-.|..-.=.. .|++|++-|..+-|.- +.++ +..|-. -..-.| .|.
T Consensus 16 G~V~D~~g~pv~~A~VeiW~~d~~G~Y~~~~~~~--~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~-~R~~HiH~~V~~ 92 (146)
T cd00421 16 GTVLDGDGCPVPDALVEIWQADADGRYSGQDDSG--LDPEFFLRGRQITDADGRYRFRTIKPGPYPI-GRPPHIHFKVFA 92 (146)
T ss_pred EEEECCCCCCCCCcEEEEEecCCCCccCCcCccc--cCCCCCCEEEEEECCCcCEEEEEEcCCCCCC-CCCCEEEEEEEC
Confidence 6777777778888999999999733333222111 7889999999998886 4454 344441 112223 333
Q ss_pred cCc-eeEEeeeeeeeeeeecCCCC
Q 045965 76 DGH-ETYIRNSFIGQHINIGGDDR 98 (140)
Q Consensus 76 ~GH-Et~I~~sflGq~~t~ggd~~ 98 (140)
.|+ ++++.+-||.+....-.|+-
T Consensus 93 ~g~~~~l~Tqlyf~~~~~~~~d~~ 116 (146)
T cd00421 93 PGYNRRLTTQLYFPGDPLNDSDPV 116 (146)
T ss_pred CCccCcEEEEEEeCCCcccccCee
Confidence 388 99999999988543334543
No 32
>smart00303 GPS G-protein-coupled receptor proteolytic site domain. Present in latrophilin/CL-1, sea urchin REJ and polycystin.
Probab=33.42 E-value=55 Score=20.53 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=27.8
Q ss_pred cccccceEEEEceeeeeeceeEEeeeecceEEEe
Q 045965 42 SNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQ 75 (140)
Q Consensus 42 ~~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~ 75 (140)
..|+-.|+.++.... +.-.|--.|+++++++++
T Consensus 13 ~~W~~~GC~~~~~~~-~~~~C~CnHlT~Favl~~ 45 (49)
T smart00303 13 GEWSTRGCELLETNS-THTTCSCNHLTTFAVLMD 45 (49)
T ss_pred CCCccccCEEEeCCC-CEEEEEEEccceEEEeEE
Confidence 568888998886665 777899999999999986
No 33
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=33.25 E-value=1.3e+02 Score=28.43 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=47.7
Q ss_pred cceeecceeeeeeecccccc--ceEEEEceeeeeeceeEEeeeecceEEEecCce------------eEEeeeeeeeee
Q 045965 27 SSLYEYITLKELMLDSNFRG--GGIAIINSIRTTVDNCYISHFTTAGISIQDGHE------------TYIRNSFIGQHI 91 (140)
Q Consensus 27 ~~~ye~It~rdlllD~~~RG--GGi~vins~r~~i~ncy~~hF~t~GIlv~~GHE------------t~I~~sflGq~~ 91 (140)
...+++++|++|.+|.++.= =|+-.-.+-++.|.+|||.- --+.|.+++|-- ..|++|.+...+
T Consensus 266 ~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~gh 343 (542)
T COG5434 266 PVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGH 343 (542)
T ss_pred eecccCceecceEEECCCCCCCCccccccceeEEEeccEEec-CCceEEeecccCCcccccccccccEEEecceecccc
Confidence 67889999999999998772 24444555589999999986 566777777432 468888887553
No 34
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=32.77 E-value=19 Score=23.11 Aligned_cols=24 Identities=29% Similarity=0.684 Sum_probs=18.5
Q ss_pred cceeeeeeeccccccceEE--EEcee
Q 045965 32 YITLKELMLDSNFRGGGIA--IINSI 55 (140)
Q Consensus 32 ~It~rdlllD~~~RGGGi~--vins~ 55 (140)
...++.+..+++|||-|+. +++.+
T Consensus 26 ~~~i~~~~v~~~~rg~Gig~~ll~~~ 51 (79)
T PF13508_consen 26 FAYIGYLAVDPEYRGKGIGSKLLNYL 51 (79)
T ss_dssp EEEEEEEEE-GGGTTSSHHHHHHHHH
T ss_pred EEEEEEEEECHHHcCCCHHHHHHHHH
Confidence 4688999999999999987 45544
No 35
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=30.59 E-value=99 Score=29.73 Aligned_cols=83 Identities=28% Similarity=0.443 Sum_probs=43.2
Q ss_pred cceeecceeeeeeecc-ccccceEEEEceeeeeeceeEEe---eeecceEEEecCceeEEeeeeeeeeeeecCCCCcccc
Q 045965 27 SSLYEYITLKELMLDS-NFRGGGIAIINSIRTTVDNCYIS---HFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDF 102 (140)
Q Consensus 27 ~~~ye~It~rdlllD~-~~RGGGi~vins~r~~i~ncy~~---hF~t~GIlv~~GHEt~I~~sflGq~~t~ggd~~e~~f 102 (140)
...++.||++|==|-+ ..||.== +....+|.|.=.. +|+|+||.+..++ .||+||+ |.- |+
T Consensus 330 ~~~~~GiTI~~pP~~Sm~l~g~~~---~~~~~~i~nyKqVGaW~~qtDGi~ly~nS--~i~dcF~--h~n---DD----- 394 (582)
T PF03718_consen 330 TLTCEGITINDPPFHSMDLYGNEN---DKFSMNISNYKQVGAWYFQTDGIELYPNS--TIRDCFI--HVN---DD----- 394 (582)
T ss_dssp EEEEES-EEE--SS-SEEEESSSG---GGEEEEEEEEEEE---CTT----B--TT---EEEEEEE--EES---S------
T ss_pred eEEEEeeEecCCCcceEEecCCcc---ccccceeeceeeeeeEEeccCCccccCCC--eeeeeEE--Eec---Cc-----
Confidence 5667777777633322 1121100 4456777655444 5899999999876 4699998 332 55
Q ss_pred eeEEEEeeCCCceeeEEEEEeeeee
Q 045965 103 SGIGINITGNDNAVTDVVIFSASIG 127 (140)
Q Consensus 103 sgtaI~l~gNDn~vtdvvIfsA~iG 127 (140)
+|.|--++-.|.|+|||-+.-|
T Consensus 395 ---~iKlYhS~v~v~~~ViWk~~Ng 416 (582)
T PF03718_consen 395 ---AIKLYHSNVSVSNTVIWKNENG 416 (582)
T ss_dssp ---SEE--STTEEEEEEEEEE-SSS
T ss_pred ---hhheeecCcceeeeEEEecCCC
Confidence 5677778999999999986544
No 36
>PF15589 Imm12: Immunity protein 12
Probab=30.02 E-value=28 Score=27.88 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=24.7
Q ss_pred eeeeeccccccceEEEEceeeeeec-eeEEe
Q 045965 36 KELMLDSNFRGGGIAIINSIRTTVD-NCYIS 65 (140)
Q Consensus 36 rdlllD~~~RGGGi~vins~r~~i~-ncy~~ 65 (140)
+=+|||+.|-|+++. -+++++.|+ .+|..
T Consensus 114 p~vLfDSA~pg~~~~-~~~l~V~l~~Gry~V 143 (155)
T PF15589_consen 114 PLVLFDSAYPGGEAP-DDQLEVDLPPGRYRV 143 (155)
T ss_pred CEEEEeccCCCCCCc-CcEEEEecCCceEEE
Confidence 558999999999999 899999995 66654
No 37
>PF07581 Glug: The GLUG motif; InterPro: IPR011493 This domain is found in the IgA1-specific metalloendopeptidases, which attach to the cell wall peptidoglycan by an amide bond []. IgA1 protease selectively cleaves human IgA1 and is likely to be a pathogenicity factor in some pathogens including Giardia spp []. This domain is also found in various other contexts, including with IPR008638 from INTERPRO. It is named GLUG after the mostly conserved G-L-any-G motif. The IgA1-specific metalloendopeptidases belong to MEROPS peptidase family M26, clan MA(E).
Probab=28.81 E-value=78 Score=18.31 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=17.2
Q ss_pred ccccceEEEEceeeeeeceeEEee
Q 045965 43 NFRGGGIAIINSIRTTVDNCYISH 66 (140)
Q Consensus 43 ~~RGGGi~vins~r~~i~ncy~~h 66 (140)
+++.||+.=.+.-..+|.|||.+.
T Consensus 2 ~~~vGGlvG~~~~~~~I~nc~atg 25 (28)
T PF07581_consen 2 NYYVGGLVGYNDNGGSITNCYATG 25 (28)
T ss_pred CccEEeEEEECCCCCEEEEEEEEe
Confidence 456677765555558999999874
No 38
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=28.27 E-value=2.9e+02 Score=21.57 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=59.2
Q ss_pred ceeeecCCCCCCCeEEEeccCCCcceeecc--eeeeeeeccccccceEEEEcee-eeee----ceeEEe---eeecceEE
Q 045965 4 GSLRASDDFSGNGHLIELRSSSSSSLYEYI--TLKELMLDSNFRGGGIAIINSI-RTTV----DNCYIS---HFTTAGIS 73 (140)
Q Consensus 4 GTLRAs~~Fp~D~~Liel~~~~s~~~ye~I--t~rdlllD~~~RGGGi~vins~-r~~i----~ncy~~---hF~t~GIl 73 (140)
|+++...-=|--+-+||+|..++.-.|+.- +... ..|++|||=|...-|.- +.++ +-.|=. ....-.|.
T Consensus 20 g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~-~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH 98 (158)
T cd03459 20 GRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRA-PLDPNFTGFGRVLTDADGRYRFRTIKPGAYPWRNGAWRAPHIH 98 (158)
T ss_pred EEEECCCCCCCCCCEEEEEccCCCCccCCccCCccc-ccCCCCCceeEEEECCCCcEEEEEECCCCcCCCCCCCcCCEEE
Confidence 566666666889999999999974333332 2111 36899999999988876 4443 455541 01222232
Q ss_pred --E-ecCc-eeEEeeeeeeeeeeecCCC
Q 045965 74 --I-QDGH-ETYIRNSFIGQHINIGGDD 97 (140)
Q Consensus 74 --v-~~GH-Et~I~~sflGq~~t~ggd~ 97 (140)
| ..|+ ++++.+-||-+....-.||
T Consensus 99 ~~V~~~g~~~~L~Tqlyf~~d~~~~~D~ 126 (158)
T cd03459 99 VSVFARGLLERLVTRLYFPGDPANAADP 126 (158)
T ss_pred EEEECCCcccceEEeEecCCCcccCcCc
Confidence 3 2488 9999999888755444555
No 39
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=25.59 E-value=3.5e+02 Score=25.31 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=59.8
Q ss_pred ccccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeeeeeecCCCCcccceeEEE-EeeCCC-ceeeEEE
Q 045965 43 NFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGI-NITGND-NAVTDVV 120 (140)
Q Consensus 43 ~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~~t~ggd~~e~~fsgtaI-~l~gND-n~vtdvv 120 (140)
+.||=||-+-++..+.|.+..|.+=..+||..++.+...|++-.+- |-+| ||| .+-++| +.|.+=+
T Consensus 236 ~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~~i~~N~~~-------~~R~-----~alhymfs~~g~~i~~N~ 303 (455)
T TIGR03808 236 GQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNIQITGNSVS-------DVRE-----VALYSEFAFEGAVIANNT 303 (455)
T ss_pred CCccccEEEEccCCeEEECCEEeccccceEEEEcccCcEEECcEee-------eeee-----eEEEEEEeCCCcEEeccE
Confidence 7999999999999999999999877779999999887776643321 1111 233 234667 8888999
Q ss_pred EEeeeeeEEEec
Q 045965 121 IFSASIGVMVQG 132 (140)
Q Consensus 121 IfsA~iGv~v~g 132 (140)
+..++.|+++..
T Consensus 304 ~~g~~~G~av~n 315 (455)
T TIGR03808 304 VDGAAVGVSVCN 315 (455)
T ss_pred EecCcceEEEEe
Confidence 999999998853
No 40
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=25.00 E-value=45 Score=25.12 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=16.9
Q ss_pred eeeeeceeEEeeeecceEEEecCcee
Q 045965 55 IRTTVDNCYISHFTTAGISIQDGHET 80 (140)
Q Consensus 55 ~r~~i~ncy~~hF~t~GIlv~~GHEt 80 (140)
+-+++||||+.| +|.|-.|-+.
T Consensus 21 vsvT~D~efVvh----dirVi~G~~G 42 (95)
T COG2088 21 VSVTLDNEFVVH----DIRVIEGNNG 42 (95)
T ss_pred EEEEecceEEEe----ccEEEeCCcc
Confidence 357899999998 7877776553
No 41
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=24.91 E-value=25 Score=25.75 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=15.2
Q ss_pred eeeeeeccccccceEEEEce
Q 045965 35 LKELMLDSNFRGGGIAIINS 54 (140)
Q Consensus 35 ~rdlllD~~~RGGGi~vins 54 (140)
|+|-|+++||||=-..|++.
T Consensus 1 W~~~l~~ASfRGVpF~v~~~ 20 (93)
T PF07157_consen 1 WRDTLLPASFRGVPFDVEST 20 (93)
T ss_pred CCccccCceECCeeEEEEEc
Confidence 67889999999866655543
No 42
>PLN03003 Probable polygalacturonase At3g15720
Probab=21.93 E-value=2.4e+02 Score=26.02 Aligned_cols=59 Identities=22% Similarity=0.252 Sum_probs=43.6
Q ss_pred ceeecceeeeeee-ccccccceEEEEceeeeeeceeEEee----eecceEEEecCceeEEeeeeee
Q 045965 28 SLYEYITLKELML-DSNFRGGGIAIINSIRTTVDNCYISH----FTTAGISIQDGHETYIRNSFIG 88 (140)
Q Consensus 28 ~~ye~It~rdlll-D~~~RGGGi~vins~r~~i~ncy~~h----F~t~GIlv~~GHEt~I~~sflG 88 (140)
...+++.+++|.| +|.+- -+.+..+..+.|++..|.- .+|+||-+.+-..+.|++|++.
T Consensus 144 ~~~~nv~I~gitl~NSp~w--~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~ 207 (456)
T PLN03003 144 RSCNNLRLSGLTHLDSPMA--HIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIA 207 (456)
T ss_pred EecCCcEEeCeEEecCCcE--EEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEe
Confidence 4455666666653 55442 3556677778888888864 6999999999999999999875
No 43
>COG3498 Phage tail tube protein FII [General function prediction only]
Probab=21.62 E-value=21 Score=29.28 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=17.5
Q ss_pred eeecceeeeeeecc-ccccceEE
Q 045965 29 LYEYITLKELMLDS-NFRGGGIA 50 (140)
Q Consensus 29 ~ye~It~rdlllD~-~~RGGGi~ 50 (140)
-.|.|||++|..-- +||||||.
T Consensus 22 ~v~~i~LPklt~k~eeyR~gGM~ 44 (169)
T COG3498 22 RVESITLPKLTRKTEEYRGGGMV 44 (169)
T ss_pred eeeeccchHHHHHHHHhhcCCcc
Confidence 46788888886654 69999997
Done!