BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045966
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 74/116 (63%)
Query: 13 DIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKK 72
D+++WSS + RL DDLGTS +E+ RGDV KS+QCYM + SE AR+H+K L+ ++WKK
Sbjct: 427 DLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKK 486
Query: 73 VNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPI 128
+NA R +KDSP + ++L R + MY +GDGHG Q+ LF P
Sbjct: 487 MNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPF 542
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 13 DIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKK 72
DI+ + I RL DDLGTS EL RGDV K+IQCYM ET SEE A EH+K L+R+ WK
Sbjct: 434 DILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKD 493
Query: 73 VNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRP 127
+N A P N+ R + F+YLHGDG GVQ+ +T + LLF P
Sbjct: 494 MNTAIA-AGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEP 547
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 13 DIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKK 72
DI++ S I RL DD+GTS DE++RGDV KS+QCYM+E SEE AREH++ L+ Q WK
Sbjct: 454 DIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKM 513
Query: 73 VNAYRANKDSPLSQTTADFMLNLVRASHFMYLH-GDGHGVQNQETMDVAFTLLF 125
+N + S S+ + NL R + ++Y H DG G+Q+ + LLF
Sbjct: 514 MN--KEMMTSSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLF 565
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 13 DIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKK 72
DII S IFRL +DL +++ E+ RG+ S+ CYM G+SEELA E + +L+ + WKK
Sbjct: 436 DIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKK 495
Query: 73 VNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPI-PLE 131
+N + S ++ + +NL R SH Y +GD H ++ T +++ PI P E
Sbjct: 496 MNKEKLG-GSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPILPFE 554
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 12 PDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWK 71
P IIQ S+ I R DD+ + +R D +I+CYM E GV+ + A + + WK
Sbjct: 437 PKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWK 496
Query: 72 KVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPIPL 130
+N K + + + LNL R +Y GDG+ + +LL PI L
Sbjct: 497 DLNQ-EFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 1 KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
++ E+L N P I++ S I+R+ DD T E RG + I+C M + G+S + A
Sbjct: 421 QDFEWLSKN--PKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 61 HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHG-DGH 109
+++ WK +N + +P+S +LNL R Y+H DG+
Sbjct: 479 KFQNMAETAWKDINEGLL-RPTPVSTEFLTPILNLARIVEVTYIHNLDGY 527
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 1 KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
++ E+L N P I++ S I+R+ DD T E RG + I+C M + G+S + A
Sbjct: 421 QDFEWLSKN--PKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 61 HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHG-DGH 109
+++ WK +N + +P+S +LNL R Y+H DG+
Sbjct: 479 KFQNMAETAWKDINEGLL-RPTPVSTEFLTPILNLARIVEVTYIHNLDGY 527
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 1 KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
++ E+L N P I++ S I R+ DD T E RG + I+C M + G+S + A
Sbjct: 421 QDFEWLSKN--PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 61 HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHG-DGH 109
+++ WK +N + +P+S +LNL R Y+H DG+
Sbjct: 479 KFQNMAETAWKDINEGLL-RPTPVSTEFLTPILNLARIVEVTYIHNLDGY 527
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 1 KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
++ E+L N P I++ S I R+ DD T E RG + I+C M + G+S + A
Sbjct: 421 QDFEWLSKN--PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 61 HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHG-DGH 109
+++ WK +N + +P+S +LNL R Y+H DG+
Sbjct: 479 KFQNMAETAWKDINEGLL-RPTPVSTEFLTPILNLARIVEVTYIHNLDGY 527
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 1 KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
++ E+L N P I++ S I R+ DD T E RG + I+C M + G+S + A
Sbjct: 421 QDFEWLSKN--PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 61 HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHG-DGH 109
+++ WK +N + +P+S +LNL R Y+H DG+
Sbjct: 479 KFQNMAETAWKDINE-GLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGY 527
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 1 KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
++ E+L N P I++ S I R+ DD T E RG + I+C M + G+S + A
Sbjct: 421 QDFEWLSKN--PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 478
Query: 61 HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHG-DGH 109
+++ WK +N + +P+S +LNL R Y+H DG+
Sbjct: 479 KFQNMAETAWKDINE-GLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGY 527
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 1 KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
++ E+L N P I++ S I R+ DD T E RG + I+C M + G+S + A
Sbjct: 423 QDFEWLSKN--PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 480
Query: 61 HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHG-DGH 109
+++ WK +N + +P+S +LNL R Y+H DG+
Sbjct: 481 KFQNMAETAWKDINEGLL-RPTPVSTEFLTPILNLARIVEVTYIHNLDGY 529
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 1 KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
++ E+L N P I++ S I R+ DD T E RG + I+C M + G+S + A
Sbjct: 408 QDFEWLSKN--PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 465
Query: 61 HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHG-DGH 109
+++ WK +N + +P+S +LNL R Y+H DG+
Sbjct: 466 KFQNMAETAWKDINEGLL-RPTPVSTEFLTPILNLARIVEVTYIHNLDGY 514
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 1 KELEFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELARE 60
++ E+L N P I++ S I R+ DD T E RG + I+C M + G+S + A
Sbjct: 423 QDFEWLSKN--PKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 480
Query: 61 HIKDLMRQMWKKVNAYRANKDSPLSQTTADFMLNLVRASHFMYLHG-DGH 109
+++ WK +N + +P+S +LNL R Y+H DG+
Sbjct: 481 KFQNMAETAWKDINEGLL-RPTPVSTEFLTPILNLARIIEVTYIHNLDGY 529
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Query: 4 EFLESNNIPD---IIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHE-TGVSEELAR 59
E LE + P + + +S I RL DD T E RG++ SI+CYM + +EE A
Sbjct: 688 EALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEAL 747
Query: 60 EHIKDLMRQMWKKVN-AYRANKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMD 118
+HI ++ K++ + D P + + R + ++ GDG GV E D
Sbjct: 748 DHIYSILEPAVKELTREFLKPDDVPFA--CKKMLFEETRVTMVIFKDGDGFGVSKLEVKD 805
Query: 119 VAFTLLFRPIPL 130
L P+PL
Sbjct: 806 HIKECLIEPLPL 817
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 22 FRLQDDLGTSTDELKRGDVWKSIQCYMHET-GVSEELAREHIKDLMRQMWKKVN--AYRA 78
+RL +D T E RG I CYM + G +EE A +HI ++ + K+ + ++
Sbjct: 647 WRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKP 706
Query: 79 NKDSPLSQTTADFMLNLVRASHFMYLHGDGHGVQNQETMDVAFTLLFRPI 128
+ D P+ F+ NL Y DG+G+ N+E D + PI
Sbjct: 707 SNDIPMG--CKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 754
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 23 RLQDDLGTSTDELKRGDVWKSIQCYMHE-TGVSEELAREHIKDLMRQMWKKVNAYRANKD 81
RL +D T E +G+V +IQCYM + +SEE A +H+ +M +++N N
Sbjct: 679 RLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK 738
Query: 82 SPLSQTTADFMLNLVRASHFMYLHGDGHGV-QNQETMDVAFTLLFRPI 128
P + R Y+ GDG + + E + LF+P+
Sbjct: 739 IP--DIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 4 EFLESNNIPDIIQWSSKIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIK 63
+F+E N+ D+ W+S+ L+ + T+ + WK++ + GV EEL E I+
Sbjct: 284 KFVEEQNLKDLRVWTSQ---LKSTIQTAEALRLPYEQWKALN--EIDAGVCEELTYEEIR 338
Query: 64 D 64
D
Sbjct: 339 D 339
>pdb|1V73|A Chain A, Crystal Structure Of Cold-Active Protein-Tyrosine
Phosphatase Of A Psychrophile Shewanella Sp
Length = 342
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 47 YMHETGVSEELAREHIKDLMRQMWKKVNA-YRANKDSPLSQTTADFMLNLV 96
YMH SE ++RE D K NA YRAN D+ AD +LN +
Sbjct: 205 YMHGGISSEWISRELTLD-------KANALYRANVDASKKSLKADDLLNFL 248
>pdb|2ZBM|A Chain A, Crystal Structure Of I115m Mutant Cold-Active Protein
Tyrosine Phosphatase
Length = 336
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 47 YMHETGVSEELAREHIKDLMRQMWKKVNA-YRANKDSPLSQTTADFMLNLV 96
YMH SE ++RE D K NA YRAN D+ AD +LN +
Sbjct: 205 YMHGGISSEWISRELTLD-------KANALYRANVDASKKSLKADDLLNFL 248
>pdb|3FN9|A Chain A, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|B Chain B, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|C Chain C, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|D Chain D, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
Length = 692
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 40 VWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAY 76
+W I C TG E A+ +++L+RQ + + Y
Sbjct: 357 IWAEIPCVNRVTGYETENAQSQLRELIRQSFNHPSIY 393
>pdb|2Z72|A Chain A, New Structure Of Cold-Active Protein Tyrosine Phosphatase
At 1.1 Angstrom
Length = 342
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 47 YMHETGVSEELAREHIKDLMRQMWKKVNA-YRANKDSPLSQTTADFMLNLV 96
YMH SE ++RE D K NA YRAN D+ AD +LN +
Sbjct: 205 YMHGGISSEWISRELTLD-------KANALYRANVDASKKSLKADDLLNFL 248
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 20 KIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYRAN 79
KI L D L S+D +K+ + + Y+H V +L K+ R +W KV +
Sbjct: 316 KIKGLLDKLNKSSDNVKK-KIEALLVEYLHFNNVIGQLKNCSTKEEARLLWAKVQKFYQK 374
Query: 80 KDS 82
D+
Sbjct: 375 NDT 377
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 20 KIFRLQDDLGTSTDELKRGDVWKSIQCYMHETGVSEELAREHIKDLMRQMWKKVNAYRAN 79
KI L D L S+D +K+ + + Y+H V +L K+ R +W KV +
Sbjct: 535 KIKGLLDKLNKSSDNVKK-KIEALLVEYLHFNNVIGQLKNCSTKEEARLLWAKVQKFYQK 593
Query: 80 KDS 82
D+
Sbjct: 594 NDT 596
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,479,036
Number of Sequences: 62578
Number of extensions: 170035
Number of successful extensions: 354
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 27
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)