BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045967
(929 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 159/589 (26%), Positives = 251/589 (42%), Gaps = 78/589 (13%)
Query: 329 QLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVP-----SHEMLIRLNNNSLSG 383
+L L +SGN G++ D+ + F D+S+N + +P S + ++ N LSG
Sbjct: 176 ELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 234
Query: 384 TIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVN-LI 442
+ + L+ + +S NQ G I P KSLQ + L+ N+ G IP + + L
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 443 DLQLDSNNFSGIAEPYMFAKLIKLKYLYISHN---SLSLGTTFK------IDIPFPKFS- 492
L L N+F G P+ + + S+N L + T K +D+ F +FS
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 493 YLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITK 552
L N+SA L LDLS + G I + + K++L L L +N T
Sbjct: 355 ELPESLTNLSA---------SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Query: 553 MKQISWKN---LGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPE 609
+ N L L L N L G +P S+ + L L L N L G IP+
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIP--------SSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 610 CIGNFSPWXXXXXXXXXXXXXGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRV 669
+ G P L NCT L + + NN++ P W+G L L +
Sbjct: 458 EL--MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 670 LVLRSNKLRG----------SLRILDLSINNFSGYLPARFFE---KLNAMRNVGADEGKL 716
L L +N G SL LDL+ N F+G +PA F+ K+ A G +
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 717 RYLG--EEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLN 774
+ G +E + ++ +G E L+ + +S + G S S+ L+
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 775 LTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQ 834
+++N +G IP +G++ L L+L N+++G IP ++ L L++L++S N+LDG IPQ
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 835 -------------------GP-----QFNTIQEDSYIGNLGLCGFSLTK 859
GP QF T ++ N GLCG+ L +
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 193/415 (46%), Gaps = 63/415 (15%)
Query: 239 MTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPA 298
M L+VL L+ E S +P+SL NLS+SL L L + F GP+
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLL---------------TLDLSSNNFSGPILP 383
Query: 299 SXXX--XXXXXXXXXXXXXFSSHIPSSLSNLVQLTCLDLSGNSFVGEIP-DIVNLTQVSF 355
+ F+ IP +LSN +L L LS N G IP + +L+++
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 356 FDLSNNQLAGPVPSHEMLIR------LNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHI 409
L N L G +P M ++ L+ N L+G IPS L + L ++ LS+N+L+G I
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 410 DEFPSK--SLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKL- 466
++ + +L + LSNN G+IP+ + + +LI L L++N F+G MF + K+
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 563
Query: 467 -------KYLYISHNSL-----SLGTTFKID-IPFPKFSYLSLF-ACNISA-------FP 505
+Y+YI ++ + G + I + + LS CNI++ P
Sbjct: 564 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 623
Query: 506 SFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKM---KQISWKNLG 562
+F + +LD+S + + G IP+ I + L LNL HN I+ + + L
Sbjct: 624 TF-DNNGSMMFLDMSYNMLSGYIPKEIGSM--PYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 563 YLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPW 617
LDL SN L G +P ++ + L +DLSNN LSG IPE +G F +
Sbjct: 681 ILDLSSNKLDGRIP--------QAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 726
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 137/504 (27%), Positives = 211/504 (41%), Gaps = 83/504 (16%)
Query: 335 LSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPL 394
LS + G + ++ DLS N L+GPV T + L S
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPV----------------TTLTSLGSCSG 124
Query: 395 LEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGI 454
L+++ +S N L +FP K + L++ + ++DL +S + + +
Sbjct: 125 LKFLNVSSNTL-----DFPGKVSGGLKLNS--------------LEVLDLSANSISGANV 165
Query: 455 AEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIP-FPKFSYLSLFACNISAFPSFLRTQDK 513
+ +LK+L IS N +S +D+ +L + + N S FL
Sbjct: 166 VGWVLSDGCGELKHLAISGNKIS----GDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSA 221
Query: 514 LFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHN-FITKMKQISWKNLGYLDLRSNLLQ 572
L +LD+S +K+ G R IS + L LN+S N F+ + + K+L YL L N
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTE--LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 279
Query: 573 GPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWXXXXXXXXXXXXXGA 632
G +P + + CD L LDLS N G +P G+ S G
Sbjct: 280 GEIP-----DFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCS--LLESLALSSNNFSGE 330
Query: 633 NP-QSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNF 691
P +L+ L+VLD+ N+ + P L N L SL LDLS NNF
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTN-------------LSASLLTLDLSSNNF 377
Query: 692 SG-YLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTID 750
SG LP N ++ + YL + + TL + ++
Sbjct: 378 SGPILPNLCQNPKNTLQEL--------YLQNNGFTGKIPPTLSNC--------SELVSLH 421
Query: 751 FSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPK 810
S N G I +G L LR L L N G+IP L + LE+L L N+L G+IP
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 811 QLASLTSLSVLNISHNRLDGPIPQ 834
L++ T+L+ +++S+NRL G IP+
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPK 505
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 203/472 (43%), Gaps = 82/472 (17%)
Query: 376 LNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS----KSLQNIYLSNNRLQ--G 429
L+N+ ++G++ + S L + LS N LSG + S L+ + +S+N L G
Sbjct: 81 LSNSHINGSVSGFKCSASLTS-LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 430 SIPSSIFELVNLIDLQLDSNNFSG--IAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIP 487
+ S +L +L L L +N+ SG + + +LK+L IS N +S +D+
Sbjct: 140 KV-SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS----GDVDVS 194
Query: 488 -FPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLS 546
+L + + N S FL L +LD+S +K+ G R IS + L LN+S
Sbjct: 195 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE--LKLLNIS 252
Query: 547 HN-FITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSG 605
N F+ + + K+L YL L N G +P + + CD L LDLS N G
Sbjct: 253 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIP-----DFLSGACD--TLTGLDLSGNHFYG 305
Query: 606 TIPECIGNFSPWXXXXXXXXXXXXXGANP-QSLVNCTKLEVLDIGNNKINDVFPYWLGNL 664
+P G+ S G P +L+ L+VLD+ N+ + P L NL
Sbjct: 306 AVPPFFGSCS--LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 665 PELRVLVLRSNKLRGSLRILDLSINNFSG-YLPARFFEKLNAMRNVGADEGKLRYLGEEY 723
SL LDLS NNFSG LP N ++ E Y
Sbjct: 364 -------------SASLLTLDLSSNNFSGPILPNLCQNPKNTLQ-------------ELY 397
Query: 724 YQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGK 783
Q+ NGF G+I + L L+L+ N+ +G
Sbjct: 398 LQN---------------------------NGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 784 IPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQG 835
IPSSLG+L+KL L L N L G+IP++L + +L L + N L G IP G
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 159/589 (26%), Positives = 251/589 (42%), Gaps = 78/589 (13%)
Query: 329 QLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVP-----SHEMLIRLNNNSLSG 383
+L L +SGN G++ D+ + F D+S+N + +P S + ++ N LSG
Sbjct: 179 ELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237
Query: 384 TIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVN-LI 442
+ + L+ + +S NQ G I P KSLQ + L+ N+ G IP + + L
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 443 DLQLDSNNFSGIAEPYMFAKLIKLKYLYISHN---SLSLGTTFK------IDIPFPKFS- 492
L L N+F G P+ + + S+N L + T K +D+ F +FS
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 493 YLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITK 552
L N+SA L LDLS + G I + + K++L L L +N T
Sbjct: 358 ELPESLTNLSA---------SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Query: 553 MKQISWKN---LGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPE 609
+ N L L L N L G +P S+ + L L L N L G IP+
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIP--------SSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 610 CIGNFSPWXXXXXXXXXXXXXGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRV 669
+ G P L NCT L + + NN++ P W+G L L +
Sbjct: 461 EL--MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 670 LVLRSNKLRG----------SLRILDLSINNFSGYLPARFFE---KLNAMRNVGADEGKL 716
L L +N G SL LDL+ N F+G +PA F+ K+ A G +
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 717 RYLG--EEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLN 774
+ G +E + ++ +G E L+ + +S + G S S+ L+
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 775 LTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQ 834
+++N +G IP +G++ L L+L N+++G IP ++ L L++L++S N+LDG IPQ
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 835 -------------------GP-----QFNTIQEDSYIGNLGLCGFSLTK 859
GP QF T ++ N GLCG+ L +
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 193/415 (46%), Gaps = 63/415 (15%)
Query: 239 MTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPA 298
M L+VL L+ E S +P+SL NLS+SL L L + F GP+
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLL---------------TLDLSSNNFSGPILP 386
Query: 299 SXXX--XXXXXXXXXXXXXFSSHIPSSLSNLVQLTCLDLSGNSFVGEIP-DIVNLTQVSF 355
+ F+ IP +LSN +L L LS N G IP + +L+++
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 356 FDLSNNQLAGPVPSHEMLIR------LNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHI 409
L N L G +P M ++ L+ N L+G IPS L + L ++ LS+N+L+G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 410 DEFPSK--SLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKL- 466
++ + +L + LSNN G+IP+ + + +LI L L++N F+G MF + K+
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566
Query: 467 -------KYLYISHNSL-----SLGTTFKID-IPFPKFSYLSLF-ACNISA-------FP 505
+Y+YI ++ + G + I + + LS CNI++ P
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626
Query: 506 SFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKM---KQISWKNLG 562
+F + +LD+S + + G IP+ I + L LNL HN I+ + + L
Sbjct: 627 TF-DNNGSMMFLDMSYNMLSGYIPKEIGSM--PYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 563 YLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPW 617
LDL SN L G +P ++ + L +DLSNN LSG IPE +G F +
Sbjct: 684 ILDLSSNKLDGRIP--------QAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 729
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 203/472 (43%), Gaps = 82/472 (17%)
Query: 376 LNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS----KSLQNIYLSNNRLQ--G 429
L+N+ ++G++ + S L + LS N LSG + S L+ + +S+N L G
Sbjct: 84 LSNSHINGSVSGFKCSASLTS-LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 430 SIPSSIFELVNLIDLQLDSNNFSG--IAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIP 487
+ S +L +L L L +N+ SG + + +LK+L IS N +S +D+
Sbjct: 143 KV-SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS----GDVDVS 197
Query: 488 -FPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLS 546
+L + + N S FL L +LD+S +K+ G R IS + L LN+S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE--LKLLNIS 255
Query: 547 HN-FITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSG 605
N F+ + + K+L YL L N G +P + + CD L LDLS N G
Sbjct: 256 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIP-----DFLSGACD--TLTGLDLSGNHFYG 308
Query: 606 TIPECIGNFSPWXXXXXXXXXXXXXGANP-QSLVNCTKLEVLDIGNNKINDVFPYWLGNL 664
+P G+ S G P +L+ L+VLD+ N+ + P L NL
Sbjct: 309 AVPPFFGSCS--LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 665 PELRVLVLRSNKLRGSLRILDLSINNFSG-YLPARFFEKLNAMRNVGADEGKLRYLGEEY 723
SL LDLS NNFSG LP N ++ E Y
Sbjct: 367 -------------SASLLTLDLSSNNFSGPILPNLCQNPKNTLQ-------------ELY 400
Query: 724 YQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGK 783
Q+ NGF G+I + L L+L+ N+ +G
Sbjct: 401 LQN---------------------------NGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 784 IPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQG 835
IPSSLG+L+KL L L N L G+IP++L + +L L + N L G IP G
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 130/303 (42%), Gaps = 51/303 (16%)
Query: 321 PSSLSNLVQLTCLDLSGNSFVGEIPDIVNLT-QVSFFDLSNNQLAGPVPSHEMLIRL--- 376
P++LS+ + T D +++G + D T +V+ DLS L P P L L
Sbjct: 21 PTTLSSWLPTT--DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78
Query: 377 ------NNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPS--KSLQNIYLSNNRLQ 428
N+L G IP + L L Y+ ++ +SG I +F S K+L + S N L
Sbjct: 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
Query: 429 GSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKL-KYLYISHNSLSLGTTFKIDIP 487
G++P SI L NL+ + D N SG A P + KL + IS N L T KI
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRL----TGKIP-- 191
Query: 488 FPKFSYLSLFACNISAFPSFLRTQDK-LFYLDLSESKIDGQIPRWISKIGKDSLSYLNLS 546
P F+ L+L ++S + L LF D + KI +GK LS
Sbjct: 192 -PTFANLNLAFVDLSR--NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----- 243
Query: 547 HNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGT 606
KNL LDLR+N + G LP + + L L++S N L G
Sbjct: 244 ------------KNLNGLDLRNNRIYGTLP--------QGLTQLKFLHSLNVSFNNLCGE 283
Query: 607 IPE 609
IP+
Sbjct: 284 IPQ 286
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 111/292 (38%), Gaps = 41/292 (14%)
Query: 564 LDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSN-NRLSGTIPECIGNFSPWXXXXX 622
LDL L P P+P S+ ++ L+ L + N L G IP I +
Sbjct: 55 LDLSGLNLPKPYPIP------SSLANLPYLNFLYIGGINNLVGPIPPAIAKLT--QLHYL 106
Query: 623 XXXXXXXXGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLR 682
GA P L L LD N ++ P + +LP L + N++ G++
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 683 ILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKI 742
S +FS + F + RN R G+ + T +
Sbjct: 167 D---SYGSFS-----KLFTSMTISRN--------RLTGK------IPPTFANLNLAF--- 201
Query: 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSN 802
+D S N +G+ S + G + + ++L N + +G L LDL +N
Sbjct: 202 ------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNN 254
Query: 803 NLAGKIPKQLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSYIGNLGLCG 854
+ G +P+ L L L LN+S N L G IPQG +Y N LCG
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 9/177 (5%)
Query: 660 WLGNLPELRVLVLRSNKLRGSLRILDLS----INNFSGYLPARFFEKLNAMRN-VGADEG 714
WLG L + R N L L L+L I + LP F + + N VG
Sbjct: 38 WLGVLCDTDTQTYRVNNL--DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95
Query: 715 KLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLN 774
+ L + +Y + G + + T+DFS N G + I L +L +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 775 LTHNHFTGKIPSSLGNLAKL-ESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDG 830
N +G IP S G+ +KL S+ +S N L GKIP A+L +L+ +++S N L+G
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 106/268 (39%), Gaps = 30/268 (11%)
Query: 205 SWKKDTNYC--SWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKN 262
SW T+ C +W G+ CD T + V N+ LS +L +P SL N
Sbjct: 26 SWLPTTDCCNRTWLGVLCDTDTQTYR-------VNNLD----LSGLNLPKPYPIPSSLAN 74
Query: 263 LS--SSLTFSELANSIG-------NLKLLGRLMLGYSQFVGPVPASXXXXXXXXXXXXXX 313
L + L + N +G L L L + ++ G +P
Sbjct: 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134
Query: 314 XXFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSF--FDLSNNQLAGPVPS-- 369
S +P S+S+L L + GN G IPD F +S N+L G +P
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 370 ---HEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFP-SKSLQNIYLSNN 425
+ + L+ N L G S + + L+ N L+ + + SK+L + L NN
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254
Query: 426 RLQGSIPSSIFELVNLIDLQLDSNNFSG 453
R+ G++P + +L L L + NN G
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 114/312 (36%), Gaps = 92/312 (29%)
Query: 485 DIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLN 544
++P+ F Y+ + P + +L YL ++ + + G IP ++S+I
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--------- 124
Query: 545 LSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLS 604
K L LD N L G LP PS I S+ +++ + NR+S
Sbjct: 125 --------------KTLVTLDFSYNALSGTLP--PS---ISSLPNLVGIT---FDGNRIS 162
Query: 605 GTIPECIGNFSPWXXXXXXXXXXXXXGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNL 664
G IP+ G+FS + I N++ P NL
Sbjct: 163 GAIPDSYGSFSKL-------------------------FTSMTISRNRLTGKIPPTFANL 197
Query: 665 PELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRN-VGADEGKLRYLGEEY 723
L + L N L G +L S N +K++ +N + D GK
Sbjct: 198 -NLAFVDLSRNMLEGDASVLFGSDKN---------TQKIHLAKNSLAFDLGK-------- 239
Query: 724 YQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGK 783
+ L K L +D +N G + Q + +L L LN++ N+ G+
Sbjct: 240 -------------VGLSKNL---NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 784 IPSSLGNLAKLE 795
IP GNL + +
Sbjct: 284 IPQG-GNLQRFD 294
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 68/116 (58%), Gaps = 11/116 (9%)
Query: 367 VPSHEMLIRLNNNSLSGTIPSWLF-SLPLLEYVRLSDNQL----SGHIDEFPSKSLQNIY 421
+P+ + L +N LS ++PS F L L + L+DN+L +G E K+L+ ++
Sbjct: 35 IPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL--KNLETLW 91
Query: 422 LSNNRLQGSIPSSIF-ELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSL 476
+++N+LQ ++P +F +LVNL +L+LD N + P +F L KL YL + +N L
Sbjct: 92 VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNEL 145
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 374 IRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQL----SGHIDEFPSKSLQNIYLSNNRLQG 429
+RL+ N L P SL L Y+ L N+L G D+ S L+ + L NN+L+
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS--LKELRLYNNQLK- 170
Query: 430 SIPSSIFE-LVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHN 474
+P F+ L L L+LD+N + E F L KLK L + N
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEG-AFDSLEKLKMLQLQEN 215
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 25/193 (12%)
Query: 646 LDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNA 705
LD+ +NK++ + L +LR+L L NKL+ LPA F++L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---------------TLPAGIFKELKN 86
Query: 706 MRNVGADEGKLRYLGEEYYQDSV-VVTLKGTEIELQKI-------LTVFTTIDFSSNGFD 757
+ + + KL+ L + V + L+ +L+ + LT T + N
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 758 GEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPK-QLASLT 816
V KL SL+ L L +N + L +L++L L +N L ++P+ SL
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLE 205
Query: 817 SLSVLNISHNRLD 829
L +L + N D
Sbjct: 206 KLKMLQLQENPWD 218
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 21/163 (12%)
Query: 682 RILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQK 741
+ LDL N S LP++ F +L +R + ++ KL+ L ++ EL+
Sbjct: 40 KKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK------------ELKN 86
Query: 742 ILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSS 801
+ T++ T N V +L +L L L N P +L KL L L
Sbjct: 87 LETLWVT----DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 802 NNLAGKIPKQL-ASLTSLSVLNISHNRLDGPIPQGPQFNTIQE 843
N L +PK + LTSL L + +N+L +P+G F+ + E
Sbjct: 143 NELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGA-FDKLTE 182
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 17/203 (8%)
Query: 318 SHIPS-SLSNLVQLTCLDLSGNSFVG-EIPDIVNLTQVSFFDLSNN-QLAGPVPS----- 369
S++P+ S + LT L L N+ G + LT + DLS+N QL P+
Sbjct: 44 SYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGL 103
Query: 370 -HEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNR 426
H + L+ L P L L+Y+ L DN L D +L +++L NR
Sbjct: 104 GHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR 163
Query: 427 LQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI 486
+ S+P F ++ +D L N P+ F L +L LY+ N+LS+ ++ +
Sbjct: 164 IP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM-LPAEVLV 221
Query: 487 PFPKFSYLSL----FACNISAFP 505
P YL L + C+ A P
Sbjct: 222 PLRSLQYLRLNDNPWVCDCRARP 244
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 767 LHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHN 826
LHSL L L NH P + +L +L +L L +NNL+ + L L SL L ++ N
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 416 SLQNIYLSNNRLQGSIPSSIFELV-NLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHN 474
S Q I+L NR+ +P++ F+ NL L L SN +GI + F L L+ L +S N
Sbjct: 32 SSQRIFLHGNRIS-YVPAASFQSCRNLTILWLHSNALAGI-DAAAFTGLTLLEQLDLSDN 89
Query: 475 S---LSLGTTFKIDIPFPKFSYLSLFACNISAF-PSFLRTQDKLFYLDLSESKIDGQIPR 530
+ + TTF+ L L C + P R L YL L ++ +
Sbjct: 90 AQLRVVDPTTFR---GLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDN 146
Query: 531 WISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLD 565
+G +L++L L N I + + +++ L LD
Sbjct: 147 TFRDLG--NLTHLFLHGNRIPSVPEHAFRGLHSLD 179
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 23/155 (14%)
Query: 352 QVSFFDLSNNQLAG-PVPSHEMLIRLNNNSLSG----TIPSWLFS-LPLLEYVRLSDNQL 405
Q ++ DL N L P + L L L G ++P+ +F+ L L Y+ LS NQL
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 406 ----SGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE-LVNLIDLQLDSNNFSGIAEPYMF 460
+G D+ L+ + L+ N+LQ S+P +F+ L L DL+L N + + +F
Sbjct: 89 QSLPNGVFDKL--TQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDG-VF 144
Query: 461 AKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLS 495
+L L+Y+++ N D P YLS
Sbjct: 145 DRLTSLQYIWLHDNPW--------DCTCPGIRYLS 171
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 17/203 (8%)
Query: 318 SHIPS-SLSNLVQLTCLDLSGNSFVG-EIPDIVNLTQVSFFDLSNN-QL--AGPVPSHEM 372
SH+P+ S LT L L N + L + DLS+N QL P H +
Sbjct: 44 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 103
Query: 373 ----LIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNR 426
+ L+ L P L L+Y+ L DN L D+ +L +++L NR
Sbjct: 104 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 163
Query: 427 LQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI 486
+ S+P F ++ +D L N P+ F L +L LY+ N+LS T +
Sbjct: 164 IS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL-A 221
Query: 487 PFPKFSYLSL----FACNISAFP 505
P YL L + C+ A P
Sbjct: 222 PLRALQYLRLNDNPWVCDCRARP 244
Score = 32.7 bits (73), Expect = 0.96, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 767 LHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHN 826
LHSL L L N P + +L +L +L L +NNL+ + LA L +L L ++ N
Sbjct: 175 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 335 LSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSG----TIPSWLF 390
++ NS + + I L V + L N+L + + + L L L+G ++P+ +F
Sbjct: 47 IANNSDIKSVQGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVF 105
Query: 391 S-LPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRLQGSIPSSIFE-LVNLIDLQL 446
L L+ + L +NQL D K +L +YL +N+LQ S+P +F+ L NL L L
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDL 164
Query: 447 DSNNFSGIAEPYMFAKLIKLKYLYISHNSL 476
D+N + E +F KL +LK L ++ N L
Sbjct: 165 DNNQLQSLPEG-VFDKLTQLKQLSLNDNQL 193
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 17/203 (8%)
Query: 318 SHIPS-SLSNLVQLTCLDLSGNSFVG-EIPDIVNLTQVSFFDLSNN-QL--AGPVPSHEM 372
SH+P+ S LT L L N + L + DLS+N QL P H +
Sbjct: 45 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104
Query: 373 ----LIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNR 426
+ L+ L P L L+Y+ L DN L D+ +L +++L NR
Sbjct: 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164
Query: 427 LQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI 486
+ S+P F ++ +D L N P+ F L +L LY+ N+LS T +
Sbjct: 165 IS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL-A 222
Query: 487 PFPKFSYLSL----FACNISAFP 505
P YL L + C+ A P
Sbjct: 223 PLRALQYLRLNDNPWVCDCRARP 245
Score = 32.7 bits (73), Expect = 0.96, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 767 LHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHN 826
LHSL L L N P + +L +L +L L +NNL+ + LA L +L L ++ N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 146/359 (40%), Gaps = 70/359 (19%)
Query: 484 IDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYL 543
I++ +FS LS S F F R Q+ LDL+ + ++G +P I G +SL L
Sbjct: 258 INLQKHRFSDLS-----SSTFRCFTRVQE----LDLTAAHLNG-LPSGIE--GMNSLKKL 305
Query: 544 NLSHNFITKMKQISWK------------NLGYLDLRSNLLQGPLPVPPSREIIHSICDII 591
L+ N ++ QI+ N+ LDL + L+ L ++ HS DI
Sbjct: 306 VLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLE-KLENLQKLDLSHS--DIE 362
Query: 592 ALDVLDLSNNRLSGTIPECIGNFSPWXXXXXXXXXXXXXGANPQSLVNCTKLEVLDIGNN 651
A D +L L + P G Q+ C +LE+LD+
Sbjct: 363 ASDCCNLQLKNLRHLQYLNLSYNEPL-------------GLEDQAFKECPQLELLDVAFT 409
Query: 652 KINDVFPYW-LGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVG 710
++ P+ NL LRVL L S +LD S L +R++
Sbjct: 410 HLHVKAPHSPFQNLHLLRVLNL-------SHCLLDTS--------NQHLLAGLQDLRHLN 454
Query: 711 ADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSL 770
L +QD + ++ L +++ + SS Q L ++
Sbjct: 455 --------LQGNSFQDGSI-----SKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNV 501
Query: 771 RLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLD 829
L+L+HN TG +L +L L L+++SNN+ P L +L+ S++N+SHN LD
Sbjct: 502 NHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLD 559
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFT-GKIPSS--LGNLAKLESLDL 799
L + ++ S D ++ L LR LNL N F G I + L + LE L L
Sbjct: 423 LHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILIL 482
Query: 800 SSNNLAGKIPKQLASLTSLSVLNISHNRLDG 830
SS NL + L +++ L++SHN L G
Sbjct: 483 SSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 367 VPSHEMLIRLNNNSLSGTIPSWLF-SLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLS 423
+PS + L +N L ++P +F L L + LS NQ+ D K L +YL
Sbjct: 26 IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 424 NNRLQGSIPSSIFE-LVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTF 482
N+LQ S+P+ +F+ L L +L LD+N + + +F +L L+ +++ N
Sbjct: 85 ENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPW------ 136
Query: 483 KIDIPFPKFSYLS 495
D P+ YLS
Sbjct: 137 --DCSCPRIDYLS 147
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 141/338 (41%), Gaps = 59/338 (17%)
Query: 502 SAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKN- 560
+ F F + Q+ LDL+ + + G +P + G + L L LS N ++ QIS N
Sbjct: 269 TTFQCFTQLQE----LDLTATHLKG-LPSGMK--GLNLLKKLVLSVNHFDQLCQISAANF 321
Query: 561 --LGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPEC----IGNF 614
L +L +R N+ + L V ++ + L LDLS+N + + +C + N
Sbjct: 322 PSLTHLYIRGNVKKLHLGVGCLEKLGN-------LQTLDLSHNDIEAS--DCCSLQLKNL 372
Query: 615 SPWXXXXXXXXXXXXXGANPQSLVNCTKLEVLDIGNNKINDVFPYW-LGNLPELRVLVLR 673
S G Q+ C +LE+LD+ +++ P NL L+VL L
Sbjct: 373 SHLQTLNLSHNEPL--GLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL- 429
Query: 674 SNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEE--YYQDSVVVT 731
+ LD S + LP LR+L + ++QD +
Sbjct: 430 ------TYCFLDTSNQHLLAGLPV------------------LRHLNLKGNHFQDGTI-- 463
Query: 732 LKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNL 791
T+ L + + + SS G Q L + ++L+HN T SL +L
Sbjct: 464 ---TKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHL 520
Query: 792 AKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLD 829
+ L+L++N++ P+ L L+ S +N+SHN LD
Sbjct: 521 KGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLD 557
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 39/165 (23%)
Query: 637 LVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLP 696
+ N T+L L IGNNKI D+ P L NL +L L + +N++
Sbjct: 217 VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS------------------ 256
Query: 697 ARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGF 756
+NA++ D KL+ L Q S + L L ++ ++F ++N
Sbjct: 257 -----DINAVK----DLTKLKXLNVGSNQISDISVLNN----LSQLNSLF----LNNNQL 299
Query: 757 DGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSS 801
E +VIG L +L L L+ NH T P L +L+K +S D ++
Sbjct: 300 GNEDXEVIGGLTNLTTLFLSQNHITDIRP--LASLSKXDSADFAN 342
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 110/266 (41%), Gaps = 57/266 (21%)
Query: 438 LVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFK-------------- 483
L NL L L+ N + I+ + L+KL LYI N ++ + +
Sbjct: 65 LTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDN 121
Query: 484 IDIPFPKFSYLSLFACNISAFPSF-----LRTQDKLFYLDLSESKIDGQIPRWISKIGKD 538
I P + ++ N+ A + L L YL ++ESK+ P I+ +
Sbjct: 122 ISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANLTD- 178
Query: 539 SLSYLNLSHNFITKMKQI-SWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLD 597
L L+L++N I + + S +L Y N + PV + L+ L
Sbjct: 179 -LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPV----------ANXTRLNSLK 227
Query: 598 LSNNRLSGTIPECIGNFS--PWXXXXXXXXXXXXXGANPQSLVNC----TKLEVLDIGNN 651
+ NN+++ P + N S W G N S +N TKL+ L++G+N
Sbjct: 228 IGNNKITDLSP--LANLSQLTW----------LEIGTNQISDINAVKDLTKLKXLNVGSN 275
Query: 652 KINDVFPYWLGNLPELRVLVLRSNKL 677
+I+D+ L NL +L L L +N+L
Sbjct: 276 QISDI--SVLNNLSQLNSLFLNNNQL 299
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 60/159 (37%), Gaps = 22/159 (13%)
Query: 680 SLRILDLSINNFSGYLPARFFEKLNAMR----------NVGADEGKLRYLGEEYYQDSVV 729
S+ LDLS N F + RFF+ + + N+G+ G ++D
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS------FGHTNFKDPDN 266
Query: 730 VTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLG 789
T KG E K T D S + + V L L L N ++
Sbjct: 267 FTFKGLEASGVK------TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 790 NLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRL 828
L L L+LS N L + +L L VL++S+N +
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 14/165 (8%)
Query: 330 LTCLDLSGNSFVGEIP----DIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTI 385
+T LDLSGN F + D + T++ LSN+ G H +N + G
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 386 PSWLFSLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRLQGSIPSSIFELVNLID 443
S + + LS +++ + S L+ + L+ N + ++ + L +L+
Sbjct: 274 ASGV------KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327
Query: 444 LQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSL-SLGTTFKIDIP 487
L L S NF G + MF L KL+ L +S+N + +LG + +P
Sbjct: 328 LNL-SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 18/210 (8%)
Query: 367 VPSHEMLIRLNNNSLSGTIPSWLF-SLPLLEYVRLSDNQLS----GHIDEFPSKSLQNIY 421
+PS + L +N L ++P +F L L + LS N LS +F + SL+ +
Sbjct: 26 IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84
Query: 422 LSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTT 481
LS N + ++ S+ L L L +N ++E +F L L YL ISH T
Sbjct: 85 LSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH----TR 139
Query: 482 FKIDIPFPKFSYLSLFACNISAF-----PSFLRTQDKLFYLDLSESKIDGQIPRWISKIG 536
+ F S L + ++F P L +LDLS+ +++ P + +
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199
Query: 537 KDSLSYLNLSHNFITKMKQISWKNLGYLDL 566
SL LN+SHN + +K L L +
Sbjct: 200 --SLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 32/195 (16%)
Query: 646 LDIGNNKINDVFPYWLGNLPELRVLVLRSNKL--RG----------SLRILDLSINNFSG 693
L++ +NK+ + L +L L L SN L +G SL+ LDLS F+G
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNG 89
Query: 694 YLP-ARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFS 752
+ + F L + ++ L+ + E SV ++L+ +D S
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEF----SVFLSLRN-----------LIYLDIS 134
Query: 753 SNGFDGEISQVIGKLHSLRLLNLTHNHFTGK-IPSSLGNLAKLESLDLSSNNLAGKIPKQ 811
+ + L SL +L + N F +P L L LDLS L P
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 812 LASLTSLSVLNISHN 826
SL+SL VLN+SHN
Sbjct: 195 FNSLSSLQVLNMSHN 209
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 392 LPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLD 447
LP LE++ LS N LS +F + SL+ + LS N + ++ S+ L L L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQ 404
Query: 448 SNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAF--- 504
+N ++E +F L L YL ISH T + F S L + ++F
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTH----TRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 505 --PSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLG 562
P L +LDLS+ +++ P + + SL LN+SHN + +K L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS--SLQVLNMSHNNFFSLDTFPYKCLN 518
Query: 563 YLDL 566
L +
Sbjct: 519 SLQV 522
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 32/198 (16%)
Query: 631 GANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINN 690
G N S V+ LE LD+ N ++ + +S+ SL+ LDLS
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLS------------FKGCCSQSDFGTTSLKYLDLS--- 381
Query: 691 FSGYLP-ARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTI 749
F+G + + F L + ++ L+ + E SV ++L+ +
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF----SVFLSLRN-----------LIYL 426
Query: 750 DFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGK-IPSSLGNLAKLESLDLSSNNLAGKI 808
D S + + L SL +L + N F +P L L LDLS L
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 809 PKQLASLTSLSVLNISHN 826
P SL+SL VLN+SHN
Sbjct: 487 PTAFNSLSSLQVLNMSHN 504
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 764 IGKLHSLRLLNLTHNHFTG-KIPSSLGNLAKLESLDLSSNNL 804
IG L +L+ LN+ HN K+P NL LE LDLSSN +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 98/250 (39%), Gaps = 65/250 (26%)
Query: 634 PQSLVNCTKLEVLDIGNNKINDVFPYWL-------------------------GNLPELR 668
P+ N T LE LD+ +NKI ++ L G E+R
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Query: 669 V--LVLRSNKLRGSLRILDLSINNFSGYLPARF-------------FEK--LNAMRNVGA 711
+ L LR+N SL ++ I +G R F+K L + N+
Sbjct: 202 LHKLTLRNN--FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259
Query: 712 DEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTI----DFSSNGFDGEISQVIG-- 765
+E +L YL +YY D ++ L + V TI DFS N F + +++
Sbjct: 260 EEFRLAYL--DYYLDD-IIDLFNCLTNVSSFSLVSVTIERVKDFSYN-FGWQHLELVNCK 315
Query: 766 -------KLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLA--GKIPKQLASLT 816
KL SL+ L T N G S +L LE LDLS N L+ G + T
Sbjct: 316 FGQFPTLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 817 SLSVLNISHN 826
SL L++S N
Sbjct: 374 SLKYLDLSFN 383
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 747 TTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAG 806
T +D S + L SL++LN++HN+F L L+ LD S N++
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532
Query: 807 KIPKQLASL-TSLSVLNISHN 826
++L +SL+ LN++ N
Sbjct: 533 SKKQELQHFPSSLAFLNLTQN 553
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 392 LPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLD 447
LP LE++ LS N LS +F + SL+ + LS N + ++ S+ L L L
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 428
Query: 448 SNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAF--- 504
+N ++E +F L L YL ISH T + F S L + ++F
Sbjct: 429 HSNLKQMSEFSVFLSLRNLIYLDISHTH----TRVAFNGIFNGLSSLEVLKMAGNSFQEN 484
Query: 505 --PSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLG 562
P L +LDLS+ +++ P + + SL LN+SHN + +K L
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS--SLQVLNMSHNNFFSLDTFPYKCLN 542
Query: 563 YLDL 566
L +
Sbjct: 543 SLQV 546
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 32/198 (16%)
Query: 631 GANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINN 690
G N S V+ LE LD+ N ++ + +S+ SL+ LDLS
Sbjct: 361 GGNAFSEVDLPSLEFLDLSRNGLS------------FKGCCSQSDFGTISLKYLDLS--- 405
Query: 691 FSGYLP-ARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTI 749
F+G + + F L + ++ L+ + E SV ++L+ +
Sbjct: 406 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF----SVFLSLRN-----------LIYL 450
Query: 750 DFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGK-IPSSLGNLAKLESLDLSSNNLAGKI 808
D S + + L SL +L + N F +P L L LDLS L
Sbjct: 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 510
Query: 809 PKQLASLTSLSVLNISHN 826
P SL+SL VLN+SHN
Sbjct: 511 PTAFNSLSSLQVLNMSHN 528
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 764 IGKLHSLRLLNLTHNHFTG-KIPSSLGNLAKLESLDLSSNNL 804
IG L +L+ LN+ HN K+P NL LE LDLSSN +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 89/229 (38%), Gaps = 63/229 (27%)
Query: 634 PQSLVNCTKLEVLDIGNNKINDVFPYWL-------------------------GNLPELR 668
P+ N T LE LD+ +NKI ++ L G E+R
Sbjct: 166 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 225
Query: 669 V--LVLRSNKLRGSLRILDLSINNFSGYLPARF-------------FEK--LNAMRNVGA 711
+ L LR+N SL ++ I +G R F+K L + N+
Sbjct: 226 LHKLTLRNN--FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283
Query: 712 DEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTI----DFSSNGFDGEISQVIG-- 765
+E +L YL +YY D ++ L + V TI DFS N F + +++
Sbjct: 284 EEFRLAYL--DYYLDG-IIDLFNCLTNVSSFSLVSVTIERVKDFSYN-FGWQHLELVNCK 339
Query: 766 -------KLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGK 807
KL SL+ L T N G S +L LE LDLS N L+ K
Sbjct: 340 FGQFPTLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFK 386
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 747 TTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAG 806
T +D S + L SL++LN++HN+F L L+ LD S N++
Sbjct: 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556
Query: 807 KIPKQLASL-TSLSVLNISHN 826
++L +SL+ LN++ N
Sbjct: 557 SKKQELQHFPSSLAFLNLTQN 577
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 32/164 (19%)
Query: 319 HIPSSLSNLVQLTCLDLSGNSFVGEIPDIV--NLTQVSFFDLSNNQLAGPVPSHEMLIRL 376
H S+L L LT L L+GN +P+ V LT + L NQL
Sbjct: 76 HDISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ------------ 122
Query: 377 NNNSLSGTIPSWLFS-LPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQGSI 431
++P +F L L Y+ L+ NQL G D+ +L + LS N+LQ S+
Sbjct: 123 -------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL--TNLTELDLSYNQLQ-SL 172
Query: 432 PSSIFE-LVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHN 474
P +F+ L L DL+L N + + +F +L L+Y+++ N
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHDN 215
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 763 VIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822
V KL +L LNL HN L L LDLS N L LT L L
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Query: 823 ISHNRLDGPIPQG 835
+ N+L +P G
Sbjct: 188 LYQNQLKS-VPDG 199
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 766 KLHSL----RLLNLTHNHFTGKIPSSLGN-----LAKLESLDLSSNNLAGKIPKQLASLT 816
KLH + L NLT+ TG SL N L L+ L L N L LT
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133
Query: 817 SLSVLNISHNRLDGPIPQG 835
+L+ LN++HN+L +P+G
Sbjct: 134 NLTYLNLAHNQLQS-LPKG 151
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 634 PQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLR-----------GSLR 682
P LV + L+ L + NK ++ N P L L ++ N R +LR
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Query: 683 ILDLSINNFSGYLPARF-FEKLNAMRNVGADEGKLRYLGEEYYQDS---VVVTLKGTEIE 738
LDLS ++ L+ ++++ + L E +++ ++ L T ++
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413
Query: 739 LQKI------LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHF-TGKI--PSSLG 789
++ L + ++ S + D Q+ L +L+ LNL NHF G I +SL
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473
Query: 790 NLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRL 828
L +LE L LS +L+ SL ++ +++SHNRL
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 31/183 (16%)
Query: 643 LEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEK 702
LE L++ N ++ V P NL LR L LRSN+L+ +P F
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK---------------LIPLGVFTG 102
Query: 703 LNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQ 762
L+ + + E K+ L + +QD + LK E+ ++ + S F G
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQD--LYNLKSLEVGDNDLVYI------SHRAFSG---- 150
Query: 763 VIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822
L+SL L L + T +L +L L L L N+ L L VL
Sbjct: 151 ----LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 823 ISH 825
ISH
Sbjct: 207 ISH 209
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 367 VPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYL 422
+P+ L+ L N + S P LE + L++N +S G + +L+ + L
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL--FNLRTLGL 87
Query: 423 SNNRLQGSIPSSIFE-LVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTT 481
+NRL+ IP +F L NL L + N + + YMF L LK L + N L + +
Sbjct: 88 RSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDL-VYIS 144
Query: 482 FKIDIPFPKFSYLSLFACNISAFPS 506
+ L+L CN+++ P+
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPT 169
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 416 SLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISH-- 473
SL+ + L L ++ L LI L+L N + I + Y F +L +LK L ISH
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWP 211
Query: 474 --NSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSF-LRTQDKLFYLDLSE---SKIDGQ 527
++++ + +++ + LS+ CN++A P +R L +L+LS S I+G
Sbjct: 212 YLDTMTPNCLYGLNL-----TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266
Query: 528 IPRWISKI-------------------GKDSLSYLNLSHNFITKMKQISWKNLGYLD 565
+ + ++ G + L LN+S N +T +++ + ++G L+
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 161/389 (41%), Gaps = 83/389 (21%)
Query: 323 SLSNLVQLTCL--DLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEML----IRL 376
S ++L Q+T L D G + + + NLTQ++F SNNQL P + I +
Sbjct: 36 SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILM 92
Query: 377 NNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIF 436
NNN ++ P L +L L + L +NQ++ D P K+L N+ NRL+
Sbjct: 93 NNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNL----NRLE-------- 135
Query: 437 ELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLS-------LGTTFKIDIPFP 489
L SN S I+ + L L+ L S N ++ L T ++DI
Sbjct: 136 ---------LSSNTISDISA---LSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSN 183
Query: 490 KFSYLSLFACNISAFPSFLRTQDKL-------FYLDLSESKIDGQIPRWISKIGK-DSLS 541
K S +S+ A ++ S + T +++ +L E ++G + I + +L+
Sbjct: 184 KVSDISVLAK-LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 242
Query: 542 YLNLSHNFITKMKQIS-WKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSN 600
L+L++N I+ + +S L L L +N + I + + AL L+L+
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISN----------ISPLAGLTALTNLELNE 292
Query: 601 NRLSGTIP--------------ECIGNFSPWXXXXXXXXXXXXXG--ANPQSLVNCTKLE 644
N+L P I + SP ++ SL N T +
Sbjct: 293 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNIN 352
Query: 645 VLDIGNNKINDVFPYWLGNLPELRVLVLR 673
L G+N+I+D+ P L NL + L L
Sbjct: 353 WLSAGHNQISDLTP--LANLTRITQLGLN 379
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 55/225 (24%)
Query: 637 LVNCTKLEVLDIGNNKINDVFPYW--------------------LGNLPELRVLVLRSNK 676
L N T LE LDI +NK++D+ LG L L L L N+
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 677 LRG--------SLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSV 728
L+ +L LDL+ N S P KL ++ +GA+ Q S
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK-LGAN------------QISN 275
Query: 729 VVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSL 788
+ L G LT T ++ + N + +IS I L +L L L N+ + P S
Sbjct: 276 ISPLAG--------LTALTNLELNENQLE-DISP-ISNLKNLTYLTLYFNNISDISPVS- 324
Query: 789 GNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIP 833
+L KL+ L S+N ++ LA+LT+++ L+ HN++ P
Sbjct: 325 -SLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 746 FTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTG--KIPSSLGNLAKLESLDLSSNN 803
FT ++F+ N F + Q L L+ L L N K+ N++ LE+LD+S N+
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 804 L-AGKIPKQLASLTSLSVLNISHNRLDGPI 832
L + + A S+ VLN+S N L G +
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 20/157 (12%)
Query: 641 TKLEVLDIGNNKINDV-FPYWLGNLPELRVLVLRSNKLR-------GSLRILDLSINNFS 692
++L VL + +N+I + F +L N +L L + N+L+ SLR LDLS N+F
Sbjct: 76 SELRVLRLSHNRIRSLDFHVFLFN-QDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFD 134
Query: 693 GYLPARFFEKLNAMRNVGADEGKLRYLG---------EEYYQDSVVVTLKGTEIELQKI- 742
+ F L + +G K R L D V +KG E E +I
Sbjct: 135 VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194
Query: 743 -LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHN 778
TV + ++ F +++ + L L+L N+ N
Sbjct: 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 161/389 (41%), Gaps = 83/389 (21%)
Query: 323 SLSNLVQLTCL--DLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEML----IRL 376
S ++L Q+T L D G + + + NLTQ++F SNNQL P + I +
Sbjct: 36 SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILM 92
Query: 377 NNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIF 436
NNN ++ P L +L L + L +NQ++ D P K+L N+ NRL+
Sbjct: 93 NNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNL----NRLE-------- 135
Query: 437 ELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLS-------LGTTFKIDIPFP 489
L SN S I+ + L L+ L S N ++ L T ++DI
Sbjct: 136 ---------LSSNTISDISA---LSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSN 183
Query: 490 KFSYLSLFACNISAFPSFLRTQDKL-------FYLDLSESKIDGQIPRWISKIGK-DSLS 541
K S +S+ A ++ S + T +++ +L E ++G + I + +L+
Sbjct: 184 KVSDISVLAK-LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 242
Query: 542 YLNLSHNFITKMKQIS-WKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSN 600
L+L++N I+ + +S L L L +N + I + + AL L+L+
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISN----------ISPLAGLTALTNLELNE 292
Query: 601 NRLSGTIP--------------ECIGNFSPWXXXXXXXXXXXXXG--ANPQSLVNCTKLE 644
N+L P I + SP ++ SL N T +
Sbjct: 293 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNIN 352
Query: 645 VLDIGNNKINDVFPYWLGNLPELRVLVLR 673
L G+N+I+D+ P L NL + L L
Sbjct: 353 WLSAGHNQISDLTP--LANLTRITQLGLN 379
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 55/225 (24%)
Query: 637 LVNCTKLEVLDIGNNKINDVFPYW--------------------LGNLPELRVLVLRSNK 676
L N T LE LDI +NK++D+ LG L L L L N+
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 677 LRG--------SLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSV 728
L+ +L LDL+ N S P KL ++ +GA+ Q S
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK-LGAN------------QISN 275
Query: 729 VVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSL 788
+ L G LT T ++ + N + +IS I L +L L L N+ + P S
Sbjct: 276 ISPLAG--------LTALTNLELNENQLE-DISP-ISNLKNLTYLTLYFNNISDISPVS- 324
Query: 789 GNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIP 833
+L KL+ L +N ++ LA+LT+++ L+ HN++ P
Sbjct: 325 -SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 161/389 (41%), Gaps = 83/389 (21%)
Query: 323 SLSNLVQLTCL--DLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEML----IRL 376
S ++L Q+T L D G + + + NLTQ++F SNNQL P + I +
Sbjct: 36 SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILM 92
Query: 377 NNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIF 436
NNN ++ P L +L L + L +NQ++ D P K+L N+ NRL+
Sbjct: 93 NNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNL----NRLE-------- 135
Query: 437 ELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLS-------LGTTFKIDIPFP 489
L SN S I+ + L L+ L S N ++ L T ++DI
Sbjct: 136 ---------LSSNTISDISA---LSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSN 183
Query: 490 KFSYLSLFACNISAFPSFLRTQDKL-------FYLDLSESKIDGQIPRWISKIGK-DSLS 541
K S +S+ A ++ S + T +++ +L E ++G + I + +L+
Sbjct: 184 KVSDISVLAK-LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 242
Query: 542 YLNLSHNFITKMKQIS-WKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSN 600
L+L++N I+ + +S L L L +N + I + + AL L+L+
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISN----------ISPLAGLTALTNLELNE 292
Query: 601 NRLSGTIP--------------ECIGNFSPWXXXXXXXXXXXXXG--ANPQSLVNCTKLE 644
N+L P I + SP ++ SL N T +
Sbjct: 293 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNIN 352
Query: 645 VLDIGNNKINDVFPYWLGNLPELRVLVLR 673
L G+N+I+D+ P L NL + L L
Sbjct: 353 WLSAGHNQISDLTP--LANLTRITQLGLN 379
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 55/225 (24%)
Query: 637 LVNCTKLEVLDIGNNKINDVFPYW--------------------LGNLPELRVLVLRSNK 676
L N T LE LDI +NK++D+ LG L L L L N+
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 677 LRG--------SLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSV 728
L+ +L LDL+ N S P KL ++ +GA+ Q S
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK-LGAN------------QISN 275
Query: 729 VVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSL 788
+ L G LT T ++ + N + +IS I L +L L L N+ + P S
Sbjct: 276 ISPLAG--------LTALTNLELNENQLE-DISP-ISNLKNLTYLTLYFNNISDISPVS- 324
Query: 789 GNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIP 833
+L KL+ L +N ++ LA+LT+++ L+ HN++ P
Sbjct: 325 -SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 22/203 (10%)
Query: 643 LEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLR----------GSLRILDLSINNFS 692
LE+L + N + + LP L L L N+L LR L L NN
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR-NNPI 119
Query: 693 GYLPARFFEKLNAMRNVGADE-GKLRYLGEEYYQDSV--------VVTLKGTEIELQKIL 743
+P+ F ++ ++R + E +L Y+ E ++ V + LK +I L
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK--DIPNLTAL 177
Query: 744 TVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNN 803
++ S N D L SLR L L H ++ +L LE L+LS NN
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN 237
Query: 804 LAGKIPKQLASLTSLSVLNISHN 826
L L L ++++HN
Sbjct: 238 LMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 764 IGKLHSLRLLNLTHNHFTG-KIPSSLGNLAKLESLDLSSNNL 804
IG L +L+ LN+ HN K+P NL LE LDLSSN +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 764 IGKLHSLRLLNLTHNHFTG-KIPSSLGNLAKLESLDLSSNNL 804
IG L +L+ LN+ HN K+P NL LE LDLSSN +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 28/221 (12%)
Query: 634 PQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLR----------GSLRI 683
P + ++L +LD G N I+ + P LP L+VL L+ N+L +L
Sbjct: 42 PTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTE 101
Query: 684 LDLSINNFSGYLPARFFEKLNAMR----NVGADEGKL------RYLGEEYYQDSVVVTLK 733
LDL N+ F + N ++ + G KL L E + ++ L+
Sbjct: 102 LDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALR 161
Query: 734 GTEIELQKILTVFTTIDFSSN---GFDGEISQVIGKLHSLRLLNLTHN-HFTGKIPSSLG 789
E+E + +D SSN F Q IGKL +L L N N H T K+ L
Sbjct: 162 SEELEFLGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELS 220
Query: 790 NLAKLESLDLSSNNLAGKIPKQLASL--TSLSVLNISHNRL 828
N +++L L++N L + L T+L+ L++S+N L
Sbjct: 221 N-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL 260
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 769 SLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRL 828
++ +LNLTHN P++ ++L LD N+++ P+ L L VLN+ HN L
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 764 IGKLHSLRLLNLTHNHFTG-KIPSSLGNLAKLESLDLSSNNL 804
IG L +L+ LN+ HN K+P NL LE LDLSSN +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 764 IGKLHSLRLLNLTHNHFTG-KIPSSLGNLAKLESLDLSSNNL 804
IG L +L+ LN+ HN K+P NL LE LDLSSN +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 764 IGKLHSLRLLNLTHNHFTG-KIPSSLGNLAKLESLDLSSNNL 804
IG L +L+ LN+ HN K+P NL LE LDLSSN +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 22/203 (10%)
Query: 643 LEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLR----------GSLRILDLSINNFS 692
LE+L + N + + LP L L L N+L LR L L NN
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR-NNPI 119
Query: 693 GYLPARFFEKLNAMRNVGADE-GKLRYLGEEYYQDSV--------VVTLKGTEIELQKIL 743
+P+ F ++ ++R + E +L Y+ E ++ V + LK +I L
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK--DIPNLTAL 177
Query: 744 TVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNN 803
++ S N D L SLR L L H ++ +L LE L+LS NN
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN 237
Query: 804 LAGKIPKQLASLTSLSVLNISHN 826
L L L ++++HN
Sbjct: 238 LMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 764 IGKLHSLRLLNLTHNHFTG-KIPSSLGNLAKLESLDLSSNNL 804
IG L +L+ LN+ HN K+P NL LE LDLSSN +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 33/207 (15%)
Query: 631 GANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINN 690
G N S V+ LE LD+ N ++ + +S+ SL+ LDLS
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLS------------FKGCCSQSDFGTTSLKYLDLS--- 381
Query: 691 FSGYLP-ARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTI 749
F+G + + F L + ++ L+ + E SV ++L+ +
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF----SVFLSLRN-----------LIYL 426
Query: 750 DFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGK-IPSSLGNLAKLESLDLSSNNLAGKI 808
D S + + L SL +L + N F +P L L LDLS L
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 809 PKQLASLTSLSVLNISHNRLDGPIPQG 835
P SL+SL VLN++ N+L +P G
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKS-VPDG 512
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 98/250 (39%), Gaps = 65/250 (26%)
Query: 634 PQSLVNCTKLEVLDIGNNKINDVFPYWL-------------------------GNLPELR 668
P+ N T LE LD+ +NKI ++ L G E+R
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Query: 669 V--LVLRSNKLRGSLRILDLSINNFSGYLPARF-------------FEK--LNAMRNVGA 711
+ L LR+N SL ++ I +G R F+K L + N+
Sbjct: 202 LHKLTLRNN--FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259
Query: 712 DEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTI----DFSSNGFDGEISQVIG-- 765
+E +L YL +YY D ++ L + V TI DFS N F + +++
Sbjct: 260 EEFRLAYL--DYYLDD-IIDLFNCLTNVSSFSLVSVTIERVKDFSYN-FGWQHLELVNCK 315
Query: 766 -------KLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLA--GKIPKQLASLT 816
KL SL+ L T N G S +L LE LDLS N L+ G + T
Sbjct: 316 FGQFPTLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 817 SLSVLNISHN 826
SL L++S N
Sbjct: 374 SLKYLDLSFN 383
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 374 IRLNNNSLSGTIPSWLFS-LPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQ 428
+ L+ N L T+ + +F L L + L++NQL+ G D L +YL N+L+
Sbjct: 64 LNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ--LDKLYLGGNQLK 120
Query: 429 GSIPSSIFE-LVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSL 476
S+PS +F+ L L +L+L++N I F KL L+ L +S N L
Sbjct: 121 -SLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQL 167
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 634 PQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLR----------GSLRI 683
P+ L N L ++D+ NN+I+ + N+ +L L+L N+LR SLR+
Sbjct: 47 PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106
Query: 684 LDLSINNFSGYLPARFFEKLNAMRN--VGAD 712
L L N+ S +P F L+A+ + +GA+
Sbjct: 107 LSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 773 LNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRL 828
L L N FT +P L N L +DLS+N ++ + +++T L L +S+NRL
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 73/189 (38%), Gaps = 26/189 (13%)
Query: 664 LPELRVLVLRSNKL------------RGSLRILDLSIN-------NFSGYLPARFFEKLN 704
LP L L L N L SLR LDLS N NF G + + +
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408
Query: 705 AMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKI---LTVFTTIDFSSNGF-DGEI 760
+ + L + Y D ++ T+I+ I LT T+ + N F D +
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLD---ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465
Query: 761 SQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSV 820
S V +L L+L+ L +L+ L++S NNL L SLS
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525
Query: 821 LNISHNRLD 829
L+ S NR++
Sbjct: 526 LDCSFNRIE 534
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 112/272 (41%), Gaps = 55/272 (20%)
Query: 317 SSHIPSSLSNLVQLTCLDLSGN----------SFVGEIPDIVNLT---QVSFFDLSNNQL 363
S +P+ SNL L +DLS N F+ E P VNL+ ++ D +Q
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ-VNLSLDMSLNPIDFIQDQA 200
Query: 364 AGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLS 423
+ HE+ +R N NS S + + L +L L RL + EF + I+
Sbjct: 201 FQGIKLHELTLRGNFNS-SNIMKTCLQNLAGLHVHRLI-------LGEFKDERNLEIF-- 250
Query: 424 NNRLQGSIPSSIFELVNLIDLQLD------SNNFSG-IAEPYMFAKLIKLKYLYISHNSL 476
SI E L D+ +D +N+FS I + + A + + +S L
Sbjct: 251 --------EPSIME--GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300
Query: 477 SLGTTFKIDIP-FPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKI 535
D+P K+ LS+ C + FP T D F L+ + G I K+
Sbjct: 301 E-------DVPKHFKWQSLSIIRCQLKQFP----TLDLPFLKSLTLTMNKGSIS--FKKV 347
Query: 536 GKDSLSYLNLSHNFITKMKQISWKNLGYLDLR 567
SLSYL+LS N ++ S+ +LG LR
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 764 IGKLHSLRLLNLTHNHF-TGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822
IG+L +L+ LN+ HN + K+P+ NL L +DLS N + L L +N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183
Query: 823 ISHNRLDGPIPQGPQFNTIQEDSYIG 848
+S + PI + IQ+ ++ G
Sbjct: 184 LSLDMSLNPI------DFIQDQAFQG 203
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 763 VIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAG------KIPKQLA--S 814
V LH L+LLN++HN+ S L L +LD S N + PK LA +
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551
Query: 815 LTSLSVLNI-SHNRLDGPIPQGPQF 838
LT+ SV I H + + + QF
Sbjct: 552 LTNNSVACICEHQKFLQWVKEQKQF 576
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 374 IRLNNNSLSGTIPSWLFS-LPLLEYVRLSDNQLS----GHIDEFPSKSLQNIYLSNNRLQ 428
+ L+ N L T+ + +F L L + L++NQL+ G D L +YL N+L+
Sbjct: 64 LNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ--LDKLYLGGNQLK 120
Query: 429 GSIPSSIFE-LVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSL 476
S+PS +F+ L L +L+L++N I F KL L+ L +S N L
Sbjct: 121 -SLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQL 167
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 73/189 (38%), Gaps = 26/189 (13%)
Query: 664 LPELRVLVLRSNKL------------RGSLRILDLSIN-------NFSGYLPARFFEKLN 704
LP L L L N L SLR LDLS N NF G + + +
Sbjct: 344 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 403
Query: 705 AMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKI---LTVFTTIDFSSNGF-DGEI 760
+ + L + Y D ++ T+I+ I LT T+ + N F D +
Sbjct: 404 STLKRVTEFSAFLSLEKLLYLD---ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 460
Query: 761 SQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSV 820
S V +L L+L+ L +L+ L++S NNL L SLS
Sbjct: 461 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 520
Query: 821 LNISHNRLD 829
L+ S NR++
Sbjct: 521 LDCSFNRIE 529
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 109/268 (40%), Gaps = 47/268 (17%)
Query: 317 SSHIPSSLSNLVQLTCLDLSGN----------SFVGEIPDIVNLT---QVSFFDLSNNQL 363
S +P+ SNL L +DLS N F+ E P VNL+ ++ D +Q
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ-VNLSLDMSLNPIDFIQDQA 195
Query: 364 AGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLS 423
+ HE+ +R N NS S + + L +L L RL + EF + I+
Sbjct: 196 FQGIKLHELTLRGNFNS-SNIMKTCLQNLAGLHVHRLI-------LGEFKDERNLEIF-E 246
Query: 424 NNRLQGSIPSSI--FELVNLIDLQLDSNNFSGIAE-PYMFAKLIKLKYLYISHNSLSLGT 480
+ ++G +I F L D D F +A M + +KYL
Sbjct: 247 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---------- 296
Query: 481 TFKIDIP-FPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDS 539
D+P K+ LS+ C + FP T D F L+ + G I K+ S
Sbjct: 297 ----DVPKHFKWQSLSIIRCQLKQFP----TLDLPFLKSLTLTMNKGSIS--FKKVALPS 346
Query: 540 LSYLNLSHNFITKMKQISWKNLGYLDLR 567
LSYL+LS N ++ S+ +LG LR
Sbjct: 347 LSYLDLSRNALSFSGCCSYSDLGTNSLR 374
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 764 IGKLHSLRLLNLTHNHF-TGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822
IG+L +L+ LN+ HN + K+P+ NL L +DLS N + L L +N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 178
Query: 823 ISHNRLDGPIPQGPQFNTIQEDSYIG 848
+S + PI + IQ+ ++ G
Sbjct: 179 LSLDMSLNPI------DFIQDQAFQG 198
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 763 VIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAG------KIPKQLA--S 814
V LH L+LLN++HN+ S L L +LD S N + PK LA +
Sbjct: 487 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 546
Query: 815 LTSLSVLNI-SHNRLDGPIPQGPQF 838
LT+ SV I H + + + QF
Sbjct: 547 LTNNSVACICEHQKFLQWVKEQKQF 571
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 156/398 (39%), Gaps = 102/398 (25%)
Query: 323 SLSNLVQLTCL--DLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEML----IRL 376
S ++L Q+T L D G + + + NLTQ++F SNNQL P + I +
Sbjct: 36 SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILM 92
Query: 377 NNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNI---YLSNNRLQ----- 428
NNN ++ P L +L L + L +NQ++ D P K+L N+ LS+N +
Sbjct: 93 NNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTISDISAL 147
Query: 429 -----------GSIPSSIFELVNLIDLQ---LDSNNFSGIAEPYMFAKLIKLKYLYISHN 474
G+ + + L NL L+ + SN S I+ + AKL L+ L ++N
Sbjct: 148 SGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNN 204
Query: 475 SLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIP----- 529
+S T I + S +I S D LDL+ ++I P
Sbjct: 205 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTD----LDLANNQISNLAPLSGLT 260
Query: 530 ---------RWISKI----GKDSLSYLNLSHNFITKMKQIS-WKNLGYLDLRSNLLQGPL 575
IS I G +L+ L L+ N + + IS KNL YL L N +
Sbjct: 261 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 320
Query: 576 PVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWXXXXXXXXXXXXXGANPQ 635
PV + L L SNN++S
Sbjct: 321 PV----------SSLTKLQRLFFSNNKVSDV----------------------------S 342
Query: 636 SLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLR 673
SL N T + L G+N+I+D+ P L NL + L L
Sbjct: 343 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 378
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 55/225 (24%)
Query: 637 LVNCTKLEVLDIGNNKINDVFPYW--------------------LGNLPELRVLVLRSNK 676
L N T LE LDI +NK++D+ LG L L L L N+
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227
Query: 677 LRG--------SLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSV 728
L+ +L LDL+ N S P KL ++ +GA+ Q S
Sbjct: 228 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK-LGAN------------QISN 274
Query: 729 VVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSL 788
+ L G LT T ++ + N + +IS I L +L L L N+ + P S
Sbjct: 275 ISPLAG--------LTALTNLELNENQLE-DISP-ISNLKNLTYLTLYFNNISDISPVS- 323
Query: 789 GNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIP 833
+L KL+ L S+N ++ LA+LT+++ L+ HN++ P
Sbjct: 324 -SLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 24/136 (17%)
Query: 353 VSFFDLSNNQL---AGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHI 409
V D S+N + GPV +++L +N+L+ T +WL + P L V LS N+L +
Sbjct: 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 270
Query: 410 DE--FPSKSLQNIYLSNNRLQG------SIPS-SIFELVNLIDLQLDSNNFSGIAEPYMF 460
+ L+ +Y+SNNRL IP+ + +L + L ++ N +P
Sbjct: 271 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN------QP--- 321
Query: 461 AKLIKLKYLYISHNSL 476
+ +L+ LY+ HNS+
Sbjct: 322 -QFDRLENLYLDHNSI 336
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 26/209 (12%)
Query: 643 LEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKL----RG------SLRILDLSINNFS 692
++ L +G N I + P+ N+P L VLVL N L RG L L +S NN
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160
Query: 693 GYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFS 752
+ F+ +++N+ +L ++ S++ +L + + T+ I
Sbjct: 161 R-IEDDTFQATTSLQNLQLSSNRLTHVDL-----SLIPSLFHANVSYNLLSTLAIPIAVE 214
Query: 753 S-NGFDGEISQVIGKLH-SLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPK 810
+ I+ V G ++ L +L L HN+ T + L N L +DLS N L +
Sbjct: 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272
Query: 811 QLASLTSLSVLNISHNRLDG------PIP 833
+ L L IS+NRL PIP
Sbjct: 273 PFVKMQRLERLYISNNRLVALNLYGQPIP 301
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 21/125 (16%)
Query: 361 NQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFP---SKSL 417
N + GPV +++L +N+L+ T +WL + P L V LS N+L I P + L
Sbjct: 218 NVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRL 274
Query: 418 QNIYLSNNRLQG------SIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYI 471
+ +Y+SNNRL IP+ L L L N+ + + +L+ LY+
Sbjct: 275 ERLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHLLHVERNQ--PQFDRLENLYL 325
Query: 472 SHNSL 476
HNS+
Sbjct: 326 DHNSI 330
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 26/209 (12%)
Query: 643 LEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKL----RG------SLRILDLSINNFS 692
++ L +G N I + P+ N+P L VLVL N L RG L L +S NN
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154
Query: 693 GYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFS 752
+ F+ +++N+ +L ++ S++ +L + + T+ I
Sbjct: 155 R-IEDDTFQATTSLQNLQLSSNRLTHVDL-----SLIPSLFHANVSYNLLSTLAIPIAVE 208
Query: 753 S-NGFDGEISQVIGKLH-SLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPK 810
+ I+ V G ++ L +L L HN+ T + L N L +DLS N L +
Sbjct: 209 ELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266
Query: 811 QLASLTSLSVLNISHNRLDG------PIP 833
+ L L IS+NRL PIP
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPIP 295
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 34/222 (15%)
Query: 393 PLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG--SIPSSIFELVNLIDLQLDSNN 450
PLLEY+ +S+NQL + S L+ I + NN L+ +P S+ E + +N
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL-EFI-----AAGNNQ 184
Query: 451 FSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRT 510
+ E L L +Y +NSL K L L +I A + L
Sbjct: 185 LEELPE---LQNLPFLTAIYADNNSLK------------KLPDLPLSLESIVAGNNILEE 229
Query: 511 QDKLFYLD-LSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSN 569
+L L L+ D + + + + SL LN+ N++T + ++ ++L +LD+ N
Sbjct: 230 LPELQNLPFLTTIYADNNLLKTLPDLPP-SLEALNVRDNYLTDLPELP-QSLTFLDVSEN 287
Query: 570 LLQGPLPVPP-------SREIIHSICDI-IALDVLDLSNNRL 603
+ G +PP S I S+CD+ +L+ L++SNN+L
Sbjct: 288 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 156/398 (39%), Gaps = 102/398 (25%)
Query: 323 SLSNLVQLTCL--DLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEML----IRL 376
S ++L Q+T L D G + + + NLTQ++F SNNQL P + I +
Sbjct: 40 SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILM 96
Query: 377 NNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNI---YLSNNRLQ----- 428
NNN ++ P L +L L + L +NQ++ D P K+L N+ LS+N +
Sbjct: 97 NNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTISDISAL 151
Query: 429 -----------GSIPSSIFELVNLIDLQ---LDSNNFSGIAEPYMFAKLIKLKYLYISHN 474
G+ + + L NL L+ + SN S I+ + AKL L+ L ++N
Sbjct: 152 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNN 208
Query: 475 SLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIP----- 529
+S T I + S +I S D LDL+ ++I P
Sbjct: 209 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTD----LDLANNQISNLAPLSGLT 264
Query: 530 ---------RWISKI----GKDSLSYLNLSHNFITKMKQIS-WKNLGYLDLRSNLLQGPL 575
IS I G +L+ L L+ N + + IS KNL YL L N +
Sbjct: 265 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 324
Query: 576 PVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWXXXXXXXXXXXXXGANPQ 635
PV + L L +NN++S
Sbjct: 325 PV----------SSLTKLQRLFFANNKVSDV----------------------------S 346
Query: 636 SLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLR 673
SL N T + L G+N+I+D+ P L NL + L L
Sbjct: 347 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 382
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 55/225 (24%)
Query: 637 LVNCTKLEVLDIGNNKINDVFPYW--------------------LGNLPELRVLVLRSNK 676
L N T LE LDI +NK++D+ LG L L L L N+
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 231
Query: 677 LRG--------SLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSV 728
L+ +L LDL+ N S P KL ++ +GA+ Q S
Sbjct: 232 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK-LGAN------------QISN 278
Query: 729 VVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSL 788
+ L G LT T ++ + N + +IS I L +L L L N+ + P S
Sbjct: 279 ISPLAG--------LTALTNLELNENQLE-DISP-ISNLKNLTYLTLYFNNISDISPVS- 327
Query: 789 GNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIP 833
+L KL+ L ++N ++ LA+LT+++ L+ HN++ P
Sbjct: 328 -SLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP 369
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 769 SLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRL 828
++ +LNLTHN ++ ++L SLD+ N ++ P+ L L VLN+ HN L
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 769 SLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRL 828
++ +LNLTHN ++ ++L SLD+ N ++ P+ L L VLN+ HN L
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 114/287 (39%), Gaps = 70/287 (24%)
Query: 444 LQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGT----TFKIDIPFPKFSYLSLFAC 499
L ++ N+ GI + MF LI LKYL +S++ SL T TF + + L+L
Sbjct: 334 LNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETF-VSLAHSPLHILNLTKN 391
Query: 500 NISAFPS-FLRTQDKLFYLDLSESKI----DGQIPRWISKIGKDSLS---YLNLSHNFIT 551
IS S L LDL ++I GQ R + I + LS YL L+ N
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451
Query: 552 KMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECI 611
+ + L + L+ N+ P P P R L +LDLSNN ++ + +
Sbjct: 452 LVPSLQRLMLRRVALK-NVDSSPSPFQPLRN----------LTILDLSNNNIANINDDML 500
Query: 612 GNFSPWXXXXXXXXXXXXXGANPQSLVNCTKLEVLDIGNNKINDVFP--------YWLGN 663
KLE+LD+ +N + ++ Y+L
Sbjct: 501 EGLE--------------------------KLEILDLQHNNLARLWKHANPGGPIYFLKG 534
Query: 664 LPELRVLVLRSN----------KLRGSLRILDLSINNFSGYLPARFF 700
L L +L L SN K L+I+DL +NN + LPA F
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT-LPASVF 580
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 769 SLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRL 828
++ +LNLTHN ++ ++L SLD+ N ++ P+ L L VLN+ HN L
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 114/287 (39%), Gaps = 70/287 (24%)
Query: 444 LQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGT----TFKIDIPFPKFSYLSLFAC 499
L ++ N+ GI + MF LI LKYL +S++ SL T TF + + L+L
Sbjct: 344 LNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETF-VSLAHSPLHILNLTKN 401
Query: 500 NISAFPS-FLRTQDKLFYLDLSESKI----DGQIPRWISKIGKDSLS---YLNLSHNFIT 551
IS S L LDL ++I GQ R + I + LS YL L+ N
Sbjct: 402 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 461
Query: 552 KMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECI 611
+ + L + L+ N+ P P P R L +LDLSNN ++ + +
Sbjct: 462 LVPSLQRLMLRRVALK-NVDSSPSPFQPLRN----------LTILDLSNNNIANINDDML 510
Query: 612 GNFSPWXXXXXXXXXXXXXGANPQSLVNCTKLEVLDIGNNKINDVFP--------YWLGN 663
KLE+LD+ +N + ++ Y+L
Sbjct: 511 EGLE--------------------------KLEILDLQHNNLARLWKHANPGGPIYFLKG 544
Query: 664 LPELRVLVLRSN----------KLRGSLRILDLSINNFSGYLPARFF 700
L L +L L SN K L+I+DL +NN + LPA F
Sbjct: 545 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT-LPASVF 590
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 322 SSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVP----SHEMLIRLN 377
+ LSNL Q+ LDL+ + I + LT + + + NNQ+ P S +R +
Sbjct: 132 AGLSNL-QVLYLDLNQ---ITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRAD 187
Query: 378 NNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYL 422
+N +S P L SLP L V L DNQ+S D P +L N+++
Sbjct: 188 DNKISDISP--LASLPNLIEVHLKDNQIS---DVSPLANLSNLFI 227
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 637 LVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKL 677
L T L+ L IGNN++ND+ P L NL +L L NK+
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKI 191
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 58/165 (35%), Gaps = 22/165 (13%)
Query: 680 SLRILDLSINNFSGYLPARFFEKLNAMR----------NVGADEGKLRYLGEEYYQDSVV 729
S+ LDLS N F + RFF+ + + N+G+ G ++D
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS------FGHTNFKDPDN 266
Query: 730 VTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLG 789
T KG E K T D S + + V L L L N ++
Sbjct: 267 FTFKGLEASGVK------TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 790 NLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQ 834
L L+ L L +N L LTSL + + N D P+
Sbjct: 321 GLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 365
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 21/172 (12%)
Query: 330 LTCLDLSGNSFVGEIP----DIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTI 385
+T LDLSGN F + D + T++ LSN+ G H +N + G
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 386 PSWLFSLPLLEYVRLSDNQLSGHIDEFPSK--SLQNIYLSNNRLQGSIPSSIFELVNLID 443
S ++ LS +++ + S L+ + L+ N + ++ + L +L +
Sbjct: 274 ASG------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKE 327
Query: 444 LQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLS 495
L LD+N + + +F +L L+ +++ N D P+ YLS
Sbjct: 328 LALDTNQLKSVPDG-IFDRLTSLQKIWLHTNPW--------DCSCPRIDYLS 370
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 58/191 (30%)
Query: 646 LDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNA 705
LD NN + D G+L EL L+L+ N+L+ +I +++ + ++L+
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-------MKSLQQLDI 381
Query: 706 MRN-VGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVI 764
+N V DE K G+ S
Sbjct: 382 SQNSVSYDEKK------------------------------------------GDCSWT- 398
Query: 765 GKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNIS 824
SL LN++ N T I L +++ LDL SN + IPKQ+ L +L LN++
Sbjct: 399 ---KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVA 452
Query: 825 HNRLDGPIPQG 835
N+L +P G
Sbjct: 453 SNQLKS-VPDG 462
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 21/153 (13%)
Query: 331 TCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLA--------GPVPSHEMLIRLNNNSLS 382
T +D +G + EIP + L L++N+L G +P H + + L N L+
Sbjct: 11 TTVDCTGRG-LKEIPRDIPLHTTELL-LNDNELGRISSDGLFGRLP-HLVKLELKRNQLT 67
Query: 383 GTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSK------SLQNIYLSNNRLQGSIPSSIF 436
G P+ ++ ++L +N+ I E +K L+ + L +N++ +P S
Sbjct: 68 GIEPNAFEGASHIQELQLGENK----IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123
Query: 437 ELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYL 469
L +L L L SN F+ FA+ ++ K L
Sbjct: 124 HLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSL 156
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 727 SVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQ--VIGKLHSLRLLNLTHNHFTGKI 784
+V T +G + E+ + + + TT ++ G IS + G+L L L L N TG
Sbjct: 12 TVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70
Query: 785 PSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIP 833
P++ + ++ L L N + K L L LN+ N++ +P
Sbjct: 71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 767 LHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSN 802
LH L+ LNL N + +P S +L L SL+L+SN
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 378 NNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 437
NN +S P L LE + LS NQL ++ P K+LQ + + N + + S+F
Sbjct: 85 NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEIT-KVRKSVFN 142
Query: 438 LVN-LIDLQLDSNNF--SGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYL 494
+N +I ++L +N SGI E F + KL Y+ I+ ++ TT +P P + L
Sbjct: 143 GLNQMIVVELGTNPLKSSGI-ENGAFQGMKKLSYIRIADTNI---TTIPQGLP-PSLTEL 197
Query: 495 SLFACNIS 502
L I+
Sbjct: 198 HLDGNKIT 205
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 16/204 (7%)
Query: 639 NCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLR-------GSLRILDLSINNF 691
N L L + NNKI+ + P L +L L L N+L+ +L+ L + N
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Query: 692 SGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTV------ 745
+ + F LN M V L+ G E + L I I T+
Sbjct: 134 T-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 192
Query: 746 -FTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNL 804
T + N + + L++L L L+ N + SL N L L L++N L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 805 AGKIPKQLASLTSLSVLNISHNRL 828
K+P LA + V+ + +N +
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNI 275
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 422 LSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSL 476
L NN++ L NL L L +N S I+ P FA L+KL+ LY+S N L
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQL 112
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 43/212 (20%)
Query: 645 VLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRG----------SLRILDLSINNFSGY 694
+LD+ NNKI ++ NL L L+L +NK+ L L LS N
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 695 LPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSN 754
LP + + L +R + K+R SV L Q I+ T S+
Sbjct: 115 LPEKMPKTLQELRVHENEITKVR--------KSVFNGLN------QMIVVELGTNPLKSS 160
Query: 755 GFDGEISQVIGKLHSLRL------------------LNLTHNHFTGKIPSSLGNLAKLES 796
G + Q + KL +R+ L+L N T +SL L L
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 797 LDLSSNNLAGKIPKQLASLTSLSVLNISHNRL 828
L LS N+++ LA+ L L++++N+L
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 378 NNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 437
NN +S P L LE + LS NQL ++ P K+LQ + + N + + S+F
Sbjct: 85 NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEIT-KVRKSVFN 142
Query: 438 LVN-LIDLQLDSNNF--SGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYL 494
+N +I ++L +N SGI E F + KL Y+ I+ ++ TT +P P + L
Sbjct: 143 GLNQMIVVELGTNPLKSSGI-ENGAFQGMKKLSYIRIADTNI---TTIPQGLP-PSLTEL 197
Query: 495 SLFACNIS 502
L I+
Sbjct: 198 HLDGNKIT 205
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 422 LSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSL 476
L NN++ L NL L L +N S I+ P FA L+KL+ LY+S N L
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQL 112
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 16/204 (7%)
Query: 639 NCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLR-------GSLRILDLSINNF 691
N L L + NNKI+ + P L +L L L N+L+ +L+ L + N
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Query: 692 SGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTV------ 745
+ + F LN M V L+ G E + L I I T+
Sbjct: 134 T-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 192
Query: 746 -FTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNL 804
T + N + + L++L L L+ N + SL N L L L++N L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 805 AGKIPKQLASLTSLSVLNISHNRL 828
K+P LA + V+ + +N +
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNI 275
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 43/212 (20%)
Query: 645 VLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRG----------SLRILDLSINNFSGY 694
+LD+ NNKI ++ NL L L+L +NK+ L L LS N
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 695 LPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSN 754
LP + + L +R + K+R SV L Q I+ T S+
Sbjct: 115 LPEKMPKTLQELRVHENEITKVR--------KSVFNGLN------QMIVVELGTNPLKSS 160
Query: 755 GFDGEISQVIGKLHSLRL------------------LNLTHNHFTGKIPSSLGNLAKLES 796
G + Q + KL +R+ L+L N T +SL L L
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 797 LDLSSNNLAGKIPKQLASLTSLSVLNISHNRL 828
L LS N+++ LA+ L L++++N+L
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 763 VIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822
V L L++L L HN+ P +L L L L+SN L L + +L +L+
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILD 532
Query: 823 ISHNRLDGPIP 833
IS N+L P P
Sbjct: 533 ISRNQLLAPNP 543
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 98/241 (40%), Gaps = 46/241 (19%)
Query: 633 NPQSLVNCTKLEVLDIGNNKINDVFP---YWLGNLPELRVL-------VLRSNKLRG--S 680
+ ++ N L +LD+G++KI + P L +L ELR+ VL+ R +
Sbjct: 65 DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124
Query: 681 LRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQ 740
L LDLS N F KLN+++++ ++ + E + TL +
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 741 KILT----------------VFTTIDFSSNGFD----GEISQVIGKLHSLRLLNLTHNHF 780
+ + V +D S NG+ G S I K + L+ L H H
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI-LAH-HI 242
Query: 781 TG--------KIP--SSLGNLAK--LESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRL 828
G K P ++ LA+ + LDLS + + +L L VLN+++N++
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 829 D 829
+
Sbjct: 303 N 303
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 155/398 (38%), Gaps = 102/398 (25%)
Query: 323 SLSNLVQLTCL--DLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEML----IRL 376
S ++L Q+T L D G + + + NLTQ++F SNNQL P + I +
Sbjct: 41 SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILM 97
Query: 377 NNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNI---YLSNNRLQ----- 428
NNN ++ P L +L L + L +NQ++ D P K+L N+ LS+N +
Sbjct: 98 NNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTISDISAL 152
Query: 429 -----------GSIPSSIFELVNLIDLQ---LDSNNFSGIAEPYMFAKLIKLKYLYISHN 474
G+ + + L NL L+ + SN S I+ + AKL L+ L ++N
Sbjct: 153 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNN 209
Query: 475 SLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIP----- 529
+S T I + S +I S D LDL+ ++I P
Sbjct: 210 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTD----LDLANNQISNLAPLSGLT 265
Query: 530 ---------RWISKI----GKDSLSYLNLSHNFITKMKQIS-WKNLGYLDLRSNLLQGPL 575
IS I G +L+ L L+ N + + IS KNL YL L N +
Sbjct: 266 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 325
Query: 576 PVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWXXXXXXXXXXXXXGANPQ 635
PV + L L NN++S
Sbjct: 326 PV----------SSLTKLQRLFFYNNKVSDV----------------------------S 347
Query: 636 SLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLR 673
SL N T + L G+N+I+D+ P L NL + L L
Sbjct: 348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 55/225 (24%)
Query: 637 LVNCTKLEVLDIGNNKINDVFPYW--------------------LGNLPELRVLVLRSNK 676
L N T LE LDI +NK++D+ LG L L L L N+
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 232
Query: 677 LRG--------SLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSV 728
L+ +L LDL+ N S P KL ++ +GA+ Q S
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK-LGAN------------QISN 279
Query: 729 VVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSL 788
+ L G LT T ++ + N + +IS I L +L L L N+ + P S
Sbjct: 280 ISPLAG--------LTALTNLELNENQLE-DISP-ISNLKNLTYLTLYFNNISDISPVS- 328
Query: 789 GNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIP 833
+L KL+ L +N ++ LA+LT+++ L+ HN++ P
Sbjct: 329 -SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 406 SGHIDEFPS---KSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAK 462
SG ++ PS ++++++ LSNNR+ S + VNL L L SN + I E F+
Sbjct: 40 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSS 98
Query: 463 LIKLKYLYISHNSLS 477
L L++L +S+N LS
Sbjct: 99 LGSLEHLDLSYNYLS 113
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 406 SGHIDEFPS---KSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAK 462
SG ++ PS ++++++ LSNNR+ S + VNL L L SN + I E F+
Sbjct: 14 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSS 72
Query: 463 LIKLKYLYISHNSLS 477
L L++L +S+N LS
Sbjct: 73 LGSLEHLDLSYNYLS 87
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 511 QDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMK-QISWKNLGYLDLRSN 569
+ ++ YLDL ++ID ++ D+L +LNL +NFI +K Q+ + L LDL SN
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAA-SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201
Query: 570 LL--QGP 574
L GP
Sbjct: 202 KLAFMGP 208
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 159/385 (41%), Gaps = 76/385 (19%)
Query: 323 SLSNLVQLTCL--DLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEML----IRL 376
S ++L Q+T L D G + + + NLTQ++F SNNQL P + I +
Sbjct: 36 SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILM 92
Query: 377 NNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQ--GSIPSS 434
NNN ++ P L +L L + L +NQ++ D P K+L N+ NRL+ + S
Sbjct: 93 NNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNL----NRLELSSNTISD 143
Query: 435 IFELVNLIDLQLDSNNFSG-IAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSY 493
I L L LQ NF + + A L L+ L IS N K S
Sbjct: 144 ISALSGLTSLQ--QLNFGNQVTDLKPLANLTTLERLDISSN---------------KVSD 186
Query: 494 LSLFACNISAFPSFLRTQDKL-------FYLDLSESKIDGQIPRWISKIGK-DSLSYLNL 545
+S+ A ++ S + T +++ +L E ++G + I + +L+ L+L
Sbjct: 187 ISVLAK-LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 245
Query: 546 SHNFITKMKQIS-WKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLS 604
++N I+ + +S L L L +N + I + + AL L+L+ N+L
Sbjct: 246 ANNQISNLAPLSGLTKLTELKLGANQISN----------ISPLAGLTALTNLELNENQLE 295
Query: 605 GTIP--------------ECIGNFSPWXXXXXXXXXXXXXG--ANPQSLVNCTKLEVLDI 648
P I + SP ++ SL N T + L
Sbjct: 296 DISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSA 355
Query: 649 GNNKINDVFPYWLGNLPELRVLVLR 673
G+N+I+D+ P L NL + L L
Sbjct: 356 GHNQISDLTP--LANLTRITQLGLN 378
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 55/225 (24%)
Query: 637 LVNCTKLEVLDIGNNKINDVFPYW--------------------LGNLPELRVLVLRSNK 676
L N T LE LDI +NK++D+ LG L L L L N+
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227
Query: 677 LRG--------SLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSV 728
L+ +L LDL+ N S P KL ++ +GA+ Q S
Sbjct: 228 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK-LGAN------------QISN 274
Query: 729 VVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSL 788
+ L G LT T ++ + N + +IS I L +L L L N+ + P S
Sbjct: 275 ISPLAG--------LTALTNLELNENQLE-DISP-ISNLKNLTYLTLYFNNISDISPVS- 323
Query: 789 GNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIP 833
+L KL+ L +N ++ LA+LT+++ L+ HN++ P
Sbjct: 324 -SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 357 DLSN---NQLAGPVPSHEMLIRLNNNSLSGTIPSWLF-SLPLLEYVRLSDNQLSGHIDE- 411
D SN N++ +P + +RLNNN + + +F LP L + S+N+++ I+E
Sbjct: 17 DCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEG 75
Query: 412 -FPSKS-LQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIA-EPYMFAKLIKLKY 468
F S + I L++NRL+ L +L L L SN + + + ++ ++L
Sbjct: 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135
Query: 469 LY 470
LY
Sbjct: 136 LY 137
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 759 EISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSL 818
E + + KL LR +N ++N T + + + + L+SN L K L SL
Sbjct: 48 EATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107
Query: 819 SVLNISHNRLDGPIPQGPQFNTIQEDSYIG 848
L + NR+ + DS+IG
Sbjct: 108 KTLMLRSNRI----------TCVGNDSFIG 127
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 16/143 (11%)
Query: 684 LDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKIL 743
L L+ N F+ F+KL +R + K+ + E ++ + V
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN------------ 84
Query: 744 TVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNN 803
I +SN + ++ L SL+ L L N T S L+ + L L N
Sbjct: 85 ----EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140
Query: 804 LAGKIPKQLASLTSLSVLNISHN 826
+ P +L SLS LN+ N
Sbjct: 141 ITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 513 KLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMK-QISWKNLGYLDLRSNLL 571
++ YLDL ++ID ++ D+L +LNL +NFI +K Q+ + L LDL SN L
Sbjct: 145 RVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL 203
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 367 VPSHEMLIRLNNNSLSGTIPSWL-FSLPLLEYVRLSDNQLSGHIDE--FPSKSLQNIYLS 423
+PS+ L+ L++N+LS W L L + LS N L+ E P +L+ + LS
Sbjct: 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96
Query: 424 NNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFK 483
+N L ++ +F + +++ L NN + + F + +L+ LY+S N +S F
Sbjct: 97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS---RFP 152
Query: 484 IDI-----PFPKFSYLSLFACNISAFP 505
+++ PK L L + + P
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLP 179
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 430 SIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFP 489
++P S+ L+DL NN S + + +L L L +SHN L+ ++ +P P
Sbjct: 32 NVPQSLPSYTALLDLS--HNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVP 88
Query: 490 KFSYLSLFACNISAFPSFL 508
YL L + ++ FL
Sbjct: 89 NLRYLDLSSNHLHTLDEFL 107
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 367 VPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSG-HIDEFPS-KSLQNIYLSN 424
+P++ ++ L++N ++ P SL L+ + L NQL + F S L + L
Sbjct: 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97
Query: 425 NRLQGSIPSSIFE-LVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFK 483
N+L +PS++F+ LV+L +L + N + + P +L L +L + N L
Sbjct: 98 NQLT-VLPSAVFDRLVHLKELFMCCNKLTEL--PRGIERLTHLTHLALDQNQLK------ 148
Query: 484 IDIPFPKFSYLS 495
IP F LS
Sbjct: 149 -SIPHGAFDRLS 159
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 38/172 (22%)
Query: 433 SSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKF 491
+ I +L L L SNN + + ++ L YL N L+ +D+ P K
Sbjct: 58 TGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLT-----NLDVTPLTKL 108
Query: 492 SYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFIT 551
+YL+ C+ +KL LD+S++ + L+YLN + N +T
Sbjct: 109 TYLN---CDT----------NKLTKLDVSQNPL---------------LTYLNCARNTLT 140
Query: 552 KMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRL 603
++ L LD N L V P ++ C + LD+S N+L
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKL 192
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 59/147 (40%), Gaps = 38/147 (25%)
Query: 738 ELQKILTVFTTIDFSSN---GFDGEISQVIG----KLHSLRLLNLTHNHFTGKIPSSLGN 790
E ++ +T+D S N G G IS + L L L N +G +
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226
Query: 791 LAKLESLDLSSNNL---AGKI----PKQLASL---------------TSLSVLNISHNRL 828
+L+ LDLS N+L AG P QL SL LSVL++S+NRL
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRL 286
Query: 829 D-GPIPQGPQFNTIQEDSYIGNLGLCG 854
D P P E +GNL L G
Sbjct: 287 DRNPSP--------DELPQVGNLSLKG 305
>pdb|3HOE|A Chain A, Crystal Structure Of Surface Lipoprotein
pdb|3HOE|B Chain B, Crystal Structure Of Surface Lipoprotein
Length = 255
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 708 NVGADEGKLRYLGEEYYQDSV---VVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVI 764
N+ +EG+ YL ++YY + V + G + T +DF++ G++S
Sbjct: 118 NLNNEEGRPNYLNDDYYTKFIGKRVGLVSGDAKPAKHKYTSQFEVDFATKKMTGKLSDKE 177
Query: 765 GKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSS 801
++++ ++ N FTG +S N K ES + S
Sbjct: 178 KTIYTVN-ADIRGNRFTGAATASDKNKGKGESYNFFS 213
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 21/134 (15%)
Query: 416 SLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNS 475
+ Q +YL +NR+ P L L L LD+N + + +F KL +L L ++ N
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQ 89
Query: 476 LSLGTTFKIDIPFPKFSYL-SLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISK 534
L IP F L SL + P D L+ + RWIS+
Sbjct: 90 LK-------SIPRGAFDNLRSLTHIWLLNNPWDCACSDILY------------LSRWISQ 130
Query: 535 IGKDSLSYLNLSHN 548
YLNL H+
Sbjct: 131 HPWLVFGYLNLDHD 144
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 418 QNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSL 476
Q ++L+NN++ P LVNL L +SN + I +F KL +L L ++ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG-VFDKLTQLTQLDLNDNHL 93
>pdb|3E1S|A Chain A, Structure Of An N-Terminal Truncation Of Deinococcus
Radiodurans Recd2
pdb|3GP8|A Chain A, Crystal Structure Of The Binary Complex Of Recd2 With Dna
pdb|3GPL|A Chain A, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
pdb|3GPL|B Chain B, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
Length = 574
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 752 SSNGFDGEISQVIGKLHSLRLLNLTHNHFTGK--IPSSLGNLAKLESLDLSSNNLAGKIP 809
+ G E + V+ +L RL+ LT TGK ++ +LA+ L++ GK
Sbjct: 186 ARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAA 245
Query: 810 KQLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSY 846
++L +T + + +RL G PQG + N ++ Y
Sbjct: 246 RRLGEVTGRTASTV--HRLLGYGPQGFRHNHLEPAPY 280
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 540 LSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDL 598
L+ LNL +TK++ + LG LDL N LQ LP+ + AL VLD+
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQT--------LPALTVLDV 107
Query: 599 SNNRLSGTIPECIGNFSPWXXXXXXXXXXXXXGANPQSLVNCT-KLEVLDIGNNKINDVF 657
S NRL+ ++P +G P L+ T KLE L + NN++ ++
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 658 PYWLGNLPELRVLVLRSNKL 677
L L L L+L+ N L
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 540 LSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDL 598
L+ LNL +TK++ + LG LDL N LQ LP+ + AL VLD+
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQT--------LPALTVLDV 107
Query: 599 SNNRLSGTIPECIGNFSPWXXXXXXXXXXXXXGANPQSLVNCT-KLEVLDIGNNKINDVF 657
S NRL+ ++P +G P L+ T KLE L + NN++ ++
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 658 PYWLGNLPELRVLVLRSNKL 677
L L L L+L+ N L
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|2DO8|A Chain A, Solution Structure Of Upf0301 Protein Hd_1794
Length = 188
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 73 PHRRRQNIDARFWLPSLPRLGTLLDKLYHDQDLSSNGLMPLTGV 116
PH+ Q I +WL S TL + Y D+ + +N ++ ++G+
Sbjct: 136 PHQLEQEIAQNYWLLSEANNQTLFETSYLDRWVEANEMLGISGI 179
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 540 LSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDL 598
L+ LNL +TK++ + LG LDL N LQ LP+ + AL VLD+
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQT--------LPALTVLDV 107
Query: 599 SNNRLSGTIPECIGNFSPWXXXXXXXXXXXXXGANPQSLVNCT-KLEVLDIGNNKINDVF 657
S NRL+ ++P +G P L+ T KLE L + NN++ ++
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 658 PYWLGNLPELRVLVLRSNKL 677
L L L L+L+ N L
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|3HOL|A Chain A, The Structure Of Intact Ap-Tbpb (N And C Lobes)
Length = 509
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 708 NVGADEGKLRYLGEEYYQDSV---VVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVI 764
N+ +EG+ YL ++YY + V + G + T +DF++ G++S
Sbjct: 133 NLNNEEGRPNYLNDDYYTKFIGKRVGLVSGDAKPAKHKYTSQFEVDFATKKMTGKLSDKE 192
Query: 765 GKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDL 799
++++ ++ N FTG +S N K ES +
Sbjct: 193 KTIYTVN-ADIRGNRFTGAATASDKNKGKGESYNF 226
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 747 TTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAG 806
TT+D S S G + ++L L N T P L +L LDL +N L
Sbjct: 12 TTVDCSGKSL---ASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 807 KIPKQLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSYI 847
LT L+ L+++ N+L IP+G F+ ++ ++I
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKS-IPRG-AFDNLKSLTHI 107
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 21/145 (14%)
Query: 334 DLSG-NSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSL 392
+LSG +F G+ +I +L + FF ++ + L++N +S P L L
Sbjct: 39 ELSGVQNFNGDNSNIQSLAGMQFF------------TNLKELHLSHNQISDLSP--LKDL 84
Query: 393 PLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFS 452
LE + ++ N+L +++ PS L ++L NN L+ + S+ L NL L + +N
Sbjct: 85 TKLEELSVNRNRLK-NLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK 141
Query: 453 GIAEPYMFAKLIKLKYLYISHNSLS 477
I M L KL+ L + N ++
Sbjct: 142 SIV---MLGFLSKLEVLDLHGNEIT 163
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 540 LSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDL 598
L+ LNL +TK++ + LG LDL N LQ LP+ + AL VLD+
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQT--------LPALTVLDV 107
Query: 599 SNNRLSGTIPECIGNFSPWXXXXXXXXXXXXXGANPQSLVNCT-KLEVLDIGNNKINDVF 657
S NRL+ ++P +G P L+ T KLE L + NN + ++
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 658 PYWLGNLPELRVLVLRSNKL 677
L L L L+L+ N L
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 747 TTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAG 806
TT+D S S G + ++L L N T P L +L LDL +N L
Sbjct: 20 TTVDCSGKSL---ASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 807 KIPKQLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSYI 847
LT L+ L+++ N+L IP+G F+ ++ ++I
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKS-IPRG-AFDNLKSLTHI 115
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 540 LSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDL 598
L+ LNL +TK++ + LG LDL N LQ LP+ + AL VLD+
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQT--------LPALTVLDV 107
Query: 599 SNNRLSGTIPECIGNFSPWXXXXXXXXXXXXXGANPQSLVNCT-KLEVLDIGNNKINDVF 657
S NRL+ ++P +G P L+ T KLE L + NN++ ++
Sbjct: 108 SFNRLT-SLP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
Query: 658 PYWLGNLPELRVLVLRSNKL 677
L L L L+L+ N L
Sbjct: 165 AGLLNGLENLDTLLLQENSL 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,368,354
Number of Sequences: 62578
Number of extensions: 948828
Number of successful extensions: 2649
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1768
Number of HSP's gapped (non-prelim): 516
length of query: 929
length of database: 14,973,337
effective HSP length: 108
effective length of query: 821
effective length of database: 8,214,913
effective search space: 6744443573
effective search space used: 6744443573
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)