Query 045967
Match_columns 929
No_of_seqs 998 out of 5106
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:26:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.5E-68 7.7E-73 675.6 47.6 563 172-856 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-53 2.7E-58 542.5 40.4 508 280-853 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 2.3E-39 5E-44 336.4 -14.4 479 241-829 46-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 2.6E-34 5.7E-39 310.8 8.6 379 360-831 69-454 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.2E-36 2.5E-41 316.3 -15.0 455 231-805 59-541 (565)
6 KOG0618 Serine/threonine phosp 100.0 5.2E-34 1.1E-38 324.6 -3.0 459 241-826 46-510 (1081)
7 KOG4194 Membrane glycoprotein 100.0 1.7E-32 3.8E-37 296.8 7.5 372 415-856 78-456 (873)
8 KOG0444 Cytoskeletal regulator 100.0 2.2E-32 4.7E-37 296.9 -2.7 360 279-676 6-373 (1255)
9 KOG0618 Serine/threonine phosp 100.0 4.6E-32 1E-36 308.8 -2.9 462 270-827 11-487 (1081)
10 KOG0444 Cytoskeletal regulator 100.0 4.4E-31 9.5E-36 286.8 -3.2 367 238-658 5-379 (1255)
11 PLN03210 Resistant to P. syrin 99.9 3E-20 6.4E-25 237.4 26.5 323 385-803 580-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 5.3E-20 1.1E-24 235.1 26.8 336 297-676 551-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.8 1.1E-19 2.3E-24 215.9 16.5 82 744-834 382-463 (788)
14 KOG4237 Extracellular matrix p 99.8 4.9E-22 1.1E-26 207.7 -3.2 409 366-826 64-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.8E-19 4E-24 213.9 17.5 266 280-614 201-468 (788)
16 KOG4237 Extracellular matrix p 99.8 1.2E-21 2.6E-26 204.9 -5.4 415 218-675 51-498 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 3.5E-18 7.5E-23 204.5 18.6 251 280-604 178-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 2.3E-17 5E-22 197.5 13.5 35 169-214 58-96 (754)
19 cd00116 LRR_RI Leucine-rich re 99.6 9.6E-17 2.1E-21 178.0 4.2 86 743-828 220-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 1.8E-16 3.9E-21 175.8 1.3 187 276-476 19-233 (319)
21 PLN03150 hypothetical protein; 99.6 1E-14 2.3E-19 174.3 11.1 118 745-862 419-538 (623)
22 KOG0617 Ras suppressor protein 99.5 4.2E-16 9.1E-21 145.7 -3.9 184 588-833 30-216 (264)
23 PLN03150 hypothetical protein; 99.5 1.1E-13 2.5E-18 165.4 13.8 155 169-363 367-527 (623)
24 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.6E-20 142.7 -4.5 159 276-454 29-188 (264)
25 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.4E-16 134.3 -1.9 191 562-827 78-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.0 1.7E-11 3.6E-16 135.0 -5.7 162 270-454 88-249 (722)
27 COG4886 Leucine-rich repeat (L 98.9 7.3E-10 1.6E-14 126.8 6.1 174 276-474 112-287 (394)
28 COG4886 Leucine-rich repeat (L 98.9 1.7E-09 3.7E-14 123.8 7.8 144 308-474 97-242 (394)
29 KOG3207 Beta-tubulin folding c 98.9 2.3E-10 5E-15 122.7 -0.5 64 277-341 118-185 (505)
30 KOG3207 Beta-tubulin folding c 98.9 2.3E-10 5E-15 122.7 -0.6 41 277-317 143-185 (505)
31 PF14580 LRR_9: Leucine-rich r 98.9 2.6E-09 5.5E-14 105.5 6.4 128 389-519 15-147 (175)
32 KOG1259 Nischarin, modulator o 98.9 6E-10 1.3E-14 113.6 1.8 86 389-476 325-411 (490)
33 KOG1909 Ran GTPase-activating 98.9 3.1E-10 6.8E-15 118.7 -0.6 95 232-339 22-131 (382)
34 KOG1259 Nischarin, modulator o 98.9 9.4E-10 2E-14 112.2 2.7 127 372-526 287-413 (490)
35 PF14580 LRR_9: Leucine-rich r 98.9 1.7E-09 3.8E-14 106.6 4.4 125 325-470 16-146 (175)
36 PF08263 LRRNT_2: Leucine rich 98.7 9.2E-09 2E-13 76.5 3.9 40 173-221 2-43 (43)
37 KOG1909 Ran GTPase-activating 98.7 1.3E-09 2.9E-14 114.1 -1.4 93 299-406 25-133 (382)
38 KOG0531 Protein phosphatase 1, 98.7 2.8E-09 6E-14 122.4 -0.2 82 279-363 71-152 (414)
39 KOG0531 Protein phosphatase 1, 98.7 3.1E-09 6.8E-14 121.9 -1.0 191 274-474 89-287 (414)
40 PF13855 LRR_8: Leucine rich r 98.6 1.4E-08 3.1E-13 82.3 2.5 60 769-828 2-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.6 4.3E-08 9.3E-13 120.2 6.8 248 281-552 546-808 (889)
42 PF13855 LRR_8: Leucine rich r 98.6 2.6E-08 5.6E-13 80.8 3.1 61 744-804 1-61 (61)
43 KOG4658 Apoptotic ATPase [Sign 98.6 4.6E-08 9.9E-13 120.0 5.1 87 236-339 567-653 (889)
44 KOG1859 Leucine-rich repeat pr 98.2 9.1E-08 2E-12 108.5 -3.2 171 634-830 102-293 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.2 5E-08 1.1E-12 99.9 -6.6 156 281-475 186-349 (419)
46 KOG1859 Leucine-rich repeat pr 98.1 4.4E-08 9.5E-13 111.0 -7.9 127 329-478 165-293 (1096)
47 KOG2982 Uncharacterized conser 98.1 7.6E-07 1.6E-11 91.5 0.5 214 276-526 41-263 (418)
48 KOG4579 Leucine-rich repeat (L 98.1 3.8E-07 8.2E-12 83.4 -2.0 104 744-850 53-156 (177)
49 KOG2120 SCF ubiquitin ligase, 98.0 2.8E-07 6E-12 94.6 -4.9 153 394-549 186-349 (419)
50 COG5238 RNA1 Ran GTPase-activa 97.9 2.5E-06 5.4E-11 86.7 0.2 93 235-340 25-132 (388)
51 KOG4579 Leucine-rich repeat (L 97.9 1.2E-06 2.5E-11 80.2 -2.5 137 681-837 29-167 (177)
52 COG5238 RNA1 Ran GTPase-activa 97.9 1.9E-06 4.2E-11 87.5 -1.3 226 232-477 50-316 (388)
53 KOG2982 Uncharacterized conser 97.7 8.1E-06 1.8E-10 84.1 0.7 83 392-474 70-156 (418)
54 PRK15386 type III secretion pr 97.6 0.00023 5E-09 79.1 10.0 31 394-425 157-187 (426)
55 KOG1644 U2-associated snRNP A' 97.6 7.3E-05 1.6E-09 73.4 5.2 105 415-522 42-150 (233)
56 PF12799 LRR_4: Leucine Rich r 97.6 4.6E-05 9.9E-10 56.8 2.5 35 770-805 3-37 (44)
57 PF12799 LRR_4: Leucine Rich r 97.5 9.8E-05 2.1E-09 55.0 2.9 37 792-829 1-37 (44)
58 PRK15386 type III secretion pr 97.4 0.0005 1.1E-08 76.4 9.6 138 276-450 48-188 (426)
59 KOG3665 ZYG-1-like serine/thre 97.4 3.5E-05 7.6E-10 92.6 -0.4 108 240-364 122-233 (699)
60 KOG1644 U2-associated snRNP A' 97.1 0.00081 1.8E-08 66.2 5.4 106 394-499 43-150 (233)
61 KOG2739 Leucine-rich acidic nu 96.9 0.00035 7.5E-09 71.7 1.4 91 272-364 35-129 (260)
62 KOG3665 ZYG-1-like serine/thre 96.7 0.0014 3E-08 79.0 4.5 61 487-550 171-232 (699)
63 KOG4341 F-box protein containi 96.5 0.00022 4.7E-09 77.3 -3.7 15 390-404 161-175 (483)
64 KOG2739 Leucine-rich acidic nu 96.3 0.0029 6.2E-08 65.1 3.0 83 392-474 42-126 (260)
65 KOG4341 F-box protein containi 96.3 0.00024 5.2E-09 77.0 -5.0 39 638-676 398-437 (483)
66 PF13306 LRR_5: Leucine rich r 95.7 0.016 3.4E-07 54.5 5.3 40 635-675 6-45 (129)
67 KOG2123 Uncharacterized conser 95.5 0.0025 5.5E-08 65.6 -1.0 35 642-678 20-54 (388)
68 KOG2123 Uncharacterized conser 95.4 0.0012 2.6E-08 67.9 -3.8 81 392-474 18-98 (388)
69 PF13306 LRR_5: Leucine rich r 95.0 0.025 5.5E-07 53.1 4.1 79 743-825 34-112 (129)
70 KOG4308 LRR-containing protein 94.5 0.00024 5.2E-09 81.9 -13.2 175 242-428 89-303 (478)
71 PF00560 LRR_1: Leucine Rich R 94.0 0.02 4.3E-07 35.6 0.6 10 772-781 4-13 (22)
72 PF00560 LRR_1: Leucine Rich R 94.0 0.019 4E-07 35.7 0.4 21 793-814 1-21 (22)
73 KOG1947 Leucine rich repeat pr 93.4 0.0099 2.1E-07 69.8 -3.0 87 276-362 210-306 (482)
74 KOG4308 LRR-containing protein 91.3 0.0059 1.3E-07 70.6 -8.1 70 585-654 109-185 (478)
75 KOG1947 Leucine rich repeat pr 90.2 0.11 2.3E-06 61.0 0.7 87 389-475 210-306 (482)
76 KOG0473 Leucine-rich repeat pr 89.5 0.021 4.6E-07 57.5 -4.9 83 743-828 41-123 (326)
77 KOG0473 Leucine-rich repeat pr 89.1 0.013 2.9E-07 58.9 -6.6 89 234-341 36-124 (326)
78 PF13504 LRR_7: Leucine rich r 85.6 0.45 9.8E-06 27.4 1.1 10 770-779 3-12 (17)
79 smart00370 LRR Leucine-rich re 82.8 1 2.3E-05 29.0 2.1 14 792-805 2-15 (26)
80 smart00369 LRR_TYP Leucine-ric 82.8 1 2.3E-05 29.0 2.1 14 792-805 2-15 (26)
81 KOG3864 Uncharacterized conser 78.2 0.72 1.6E-05 46.1 0.2 35 743-777 150-185 (221)
82 smart00369 LRR_TYP Leucine-ric 77.4 1.6 3.5E-05 28.0 1.6 17 767-783 1-17 (26)
83 smart00370 LRR Leucine-rich re 77.4 1.6 3.5E-05 28.0 1.6 17 767-783 1-17 (26)
84 PF13516 LRR_6: Leucine Rich r 76.2 0.47 1E-05 30.0 -1.2 15 792-806 2-16 (24)
85 KOG3864 Uncharacterized conser 66.3 0.69 1.5E-05 46.2 -3.0 61 387-447 119-184 (221)
86 smart00365 LRR_SD22 Leucine-ri 58.0 7.7 0.00017 25.2 1.7 14 792-805 2-15 (26)
87 KOG4242 Predicted myosin-I-bin 54.7 66 0.0014 36.7 9.2 65 280-346 165-232 (553)
88 smart00364 LRR_BAC Leucine-ric 46.3 13 0.00027 24.2 1.3 12 770-781 4-15 (26)
89 smart00368 LRR_RI Leucine rich 46.0 15 0.00032 24.2 1.6 14 792-805 2-15 (28)
90 KOG4242 Predicted myosin-I-bin 42.4 53 0.0011 37.4 6.1 18 328-345 165-182 (553)
91 KOG3763 mRNA export factor TAP 40.5 16 0.00036 42.2 2.0 44 509-552 241-284 (585)
92 TIGR00864 PCC polycystin catio 34.5 27 0.00058 48.3 2.8 32 774-805 1-32 (2740)
93 KOG3763 mRNA export factor TAP 31.2 35 0.00075 39.7 2.6 16 413-428 216-231 (585)
94 PF03302 VSP: Giardia variant- 21.2 48 0.001 37.7 1.5 23 889-911 368-390 (397)
95 PF15050 SCIMP: SCIMP protein 20.6 44 0.00094 30.3 0.7 37 887-928 8-44 (133)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.5e-68 Score=675.58 Aligned_cols=563 Identities=33% Similarity=0.497 Sum_probs=422.8
Q ss_pred CHHHHHHHHHHhhcCCCCCCCcccccccccccCCCCCCCCCCCCcccccCCCCcccccCchhhhhcCCCCceEEEcCCCC
Q 045967 172 PHEQSSALIQFKQLFSFDGDSSFVCQHSYPKMISWKKDTNYCSWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLE 251 (929)
Q Consensus 172 ~~~e~~aLl~~k~~l~~~~~~~~~~~~~~~~l~sW~~~~~~C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~ 251 (929)
.++|++||++||+++.++.+ .+.+|+.+.+||.|.||+|+.. .+++.|+|++++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~----------~~~~w~~~~~~c~w~gv~c~~~----------------~~v~~L~L~~~~ 80 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLK----------YLSNWNSSADVCLWQGITCNNS----------------SRVVSIDLSGKN 80 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcc----------cCCCCCCCCCCCcCcceecCCC----------------CcEEEEEecCCC
Confidence 67899999999999975443 5789987889999999999854 279999999998
Q ss_pred CCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccC-CCCCCCEEeccCccCCCCCccccCCCCCC
Q 045967 252 MSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLG-NLTQLTLLHLMHNNFSSHIPSSLSNLVQL 330 (929)
Q Consensus 252 l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L 330 (929)
++|. ++..+..+++|++|+|++|.+.+.+|..+. .+++|++|+|++|++++.+|. +.+++|
T Consensus 81 i~~~----------------~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L 142 (968)
T PLN00113 81 ISGK----------------ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142 (968)
T ss_pred cccc----------------CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCC
Confidence 8544 455677789999999999999988887755 899999999999999988885 568999
Q ss_pred CEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCCC------CcEEEcCCCCCCCCCCccccCCCCCcEEEcccc
Q 045967 331 TCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPSH------EMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDN 403 (929)
Q Consensus 331 ~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~------L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 403 (929)
++|++++|.+++.+|. ++++++|++|++++|.+.+.+|.. |++|++++|.+++.+|..++++++|++|++++|
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 9999999999988887 899999999999999888766643 566666666666666666666666666666666
Q ss_pred cCCCCCCCC--CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCcc
Q 045967 404 QLSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTT 481 (929)
Q Consensus 404 ~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 481 (929)
++++.+|.. .+++|++|++++|.+++.+|..+.++++|+.|++++|++.+..| ..+.++++|++|++++|. +.+
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~--l~~- 298 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNS--LSG- 298 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEECcCCe--ecc-
Confidence 666555543 55666666666666666666666666666666666666655554 455566666666666652 222
Q ss_pred ccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc---CCC
Q 045967 482 FKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ---ISW 558 (929)
Q Consensus 482 ~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~---~~~ 558 (929)
.+|..+..+++|++|++++|.+.+..|..+ ..+++|+.|++++|.+++..+ ..+
T Consensus 299 ---------------------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 299 ---------------------EIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred ---------------------CCChhHcCCCCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 345555556666666666666666666555 455666666666666655444 334
Q ss_pred CCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCccccc
Q 045967 559 KNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLV 638 (929)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~ 638 (929)
++|+.|++++|+++ +.+|..++.+++|+.|++++|++.+.+|..++.++.+ +.+++++|.+++..|..+.
T Consensus 356 ~~L~~L~Ls~n~l~--------~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L--~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 356 NNLTVLDLSTNNLT--------GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL--RRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred CCCcEEECCCCeeE--------eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC--CEEECcCCEeeeECChhHh
Confidence 56666666666666 5556666666667777777777766666666666653 4667777777666666666
Q ss_pred CCCCCcEEEccCCcCCCCCcccccCCCCCceeecccccccc---------ccceeeCCCCcCcccCCHHHHhhhhccccc
Q 045967 639 NCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRG---------SLRILDLSINNFSGYLPARFFEKLNAMRNV 709 (929)
Q Consensus 639 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~---------~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L 709 (929)
++++|+.|++++|.+++.+|..+..+++|+.|++++|++.+ .|+.||+++|++++.+|..+
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~---------- 495 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL---------- 495 (968)
T ss_pred cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhh----------
Confidence 77777777777777777666666666677666666665543 14555555555555555322
Q ss_pred ccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCcccc
Q 045967 710 GADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLG 789 (929)
Q Consensus 710 ~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~ 789 (929)
..++.|+.|+|++|++++.+|+.++++++|++|+|++|.+++.+|..++
T Consensus 496 -------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 496 -------------------------------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred -------------------------------hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 1267889999999999999999999999999999999999999999999
Q ss_pred CcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCCCCCCCccccccccCCcCCCCCC
Q 045967 790 NLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSYIGNLGLCGFS 856 (929)
Q Consensus 790 ~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~Lcg~~ 856 (929)
.+++|+.|||++|+++|.+|..+.++++|+.|++++|+++|.+|..++|.++...+|.||+++||.+
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-53 Score=542.48 Aligned_cols=508 Identities=29% Similarity=0.419 Sum_probs=391.5
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccC-CCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLS-NLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDL 358 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~L 358 (929)
.+++.|+|++|.+++.+|..|..+++|++|+|++|++++.+|..+. ++++|++|++++|++++.+|. +.+++|++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEEC
Confidence 4789999999999999999999999999999999999998888765 999999999999999988774 56788888888
Q ss_pred CCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCCCCCCCccccc
Q 045967 359 SNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIF 436 (929)
Q Consensus 359 s~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~ 436 (929)
++|.+++.+| ..++++++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+.
T Consensus 148 s~n~~~~~~p------------------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 209 (968)
T PLN00113 148 SNNMLSGEIP------------------NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209 (968)
T ss_pred cCCcccccCC------------------hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc
Confidence 8887775544 44555555555555555555444443 455555555555555555555555
Q ss_pred cCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccC-CCCCcceeeccccCCC-CCChhhhccccc
Q 045967 437 ELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKFSYLSLFACNIS-AFPSFLRTQDKL 514 (929)
Q Consensus 437 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l~-~lp~~l~~~~~L 514 (929)
++++|++|++++|++.+.+| ..++++++|++|++++| ...+..+..+ .+++|+.|++++|.+. .+|..+..+++|
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYN--NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred CcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCc--eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence 55555555555555555444 44555555555555555 2333333333 4455555555555554 578888899999
Q ss_pred ceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc---CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccC
Q 045967 515 FYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDII 591 (929)
Q Consensus 515 ~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~ 591 (929)
++|++++|.+.+.+|.++ ..+++|+.|++++|.+++..+ ..+++|+.|++++|.++ +.+|..++.++
T Consensus 287 ~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~p~~l~~~~ 356 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS--------GEIPKNLGKHN 356 (968)
T ss_pred CEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc--------CcCChHHhCCC
Confidence 999999999999999888 788999999999999988776 45678999999999998 67788888899
Q ss_pred CCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceee
Q 045967 592 ALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLV 671 (929)
Q Consensus 592 ~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 671 (929)
+|+.|++++|++++.+|..+..+..+ ..+++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus 357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L--~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 357 NLTVLDLSTNNLTGEIPEGLCSSGNL--FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CCcEEECCCCeeEeeCChhHhCcCCC--CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 99999999999999999888877763 5899999999999999899999999999999999988888888899888877
Q ss_pred ccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeec
Q 045967 672 LRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDF 751 (929)
Q Consensus 672 Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 751 (929)
+++|.++ +.+|. .+..+++|+.|++++|.+...-+..+ ..++|+.||+
T Consensus 435 Ls~N~l~--------------~~~~~-~~~~l~~L~~L~L~~n~~~~~~p~~~-----------------~~~~L~~L~l 482 (968)
T PLN00113 435 ISNNNLQ--------------GRINS-RKWDMPSLQMLSLARNKFFGGLPDSF-----------------GSKRLENLDL 482 (968)
T ss_pred CcCCccc--------------CccCh-hhccCCCCcEEECcCceeeeecCccc-----------------ccccceEEEC
Confidence 7777665 34442 23345666666666665432111100 1467999999
Q ss_pred cccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccC
Q 045967 752 SSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGP 831 (929)
Q Consensus 752 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~ 831 (929)
++|++++.+|..+.++++|+.|+|++|++.+.+|..++++++|++|+|++|.+++.+|..+.++++|+.|++++|+++|.
T Consensus 483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 562 (968)
T PLN00113 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562 (968)
T ss_pred cCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCccccccccCCcCCC
Q 045967 832 IPQGP-QFNTIQEDSYIGNLGLC 853 (929)
Q Consensus 832 iP~~~-~~~~~~~~~~~gn~~Lc 853 (929)
+|... .+..+....+.+|+..+
T Consensus 563 ~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 563 IPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CChhHhcCcccCEEeccCCccee
Confidence 99753 23445555666676544
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-39 Score=336.36 Aligned_cols=479 Identities=27% Similarity=0.373 Sum_probs=361.0
Q ss_pred CceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCC
Q 045967 241 KLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHI 320 (929)
Q Consensus 241 ~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 320 (929)
.++.|++++|.+. .+.+.+.++..|.+|++++|+++. +|.+++.+..++.|+.++|+++ .+
T Consensus 46 ~l~~lils~N~l~-----------------~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~l 106 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-----------------VLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-EL 106 (565)
T ss_pred chhhhhhccCchh-----------------hccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hc
Confidence 3677889888763 234567788999999999999874 8889999999999999999998 78
Q ss_pred ccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEc
Q 045967 321 PSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRL 400 (929)
Q Consensus 321 p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 400 (929)
|+.++.+.+|++|+.++|.+...+++++.+-.|..++..+|+++ ..|+.++++.+|..+++
T Consensus 107 p~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-------------------slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 107 PEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-------------------SLPEDMVNLSKLSKLDL 167 (565)
T ss_pred cHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc-------------------cCchHHHHHHHHHHhhc
Confidence 99999999999999999999988888999999999999999987 67888888899999999
Q ss_pred ccccCCCCCCCC-CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCC
Q 045967 401 SDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLG 479 (929)
Q Consensus 401 s~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 479 (929)
.+|++....+.. .++.|++||...|.++ .+|..++.+.+|..|+|..|++... ..|.++..|++|+++.|+|.
T Consensus 168 ~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l---Pef~gcs~L~Elh~g~N~i~-- 241 (565)
T KOG0472|consen 168 EGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL---PEFPGCSLLKELHVGENQIE-- 241 (565)
T ss_pred cccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC---CCCCccHHHHHHHhcccHHH--
Confidence 999988666655 7888999999988886 8888999999999999999998876 26889999999999998653
Q ss_pred ccccccC--CCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccC-
Q 045967 480 TTFKIDI--PFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQI- 556 (929)
Q Consensus 480 ~~~~~~~--~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~- 556 (929)
.++.+. .++++..|++..|+++++|+.+..+.+|.+||+|+|.+++ .|..+ +++ .|+.|.+.+|.+..+...
T Consensus 242 -~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp~sL--gnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 242 -MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LPYSL--GNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred -hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CCccc--ccc-eeeehhhcCCchHHHHHHH
Confidence 333333 6888899999999999999999999999999999999986 45555 666 899999999998876541
Q ss_pred -CC---CCccEEEc--CCCCCC---CCCCCCCC--cccchhhhccCCCCEEeCCCCcCcCCCccccccC-cccccceeec
Q 045967 557 -SW---KNLGYLDL--RSNLLQ---GPLPVPPS--REIIHSICDIIALDVLDLSNNRLSGTIPECIGNF-SPWLSVSLNL 624 (929)
Q Consensus 557 -~~---~~L~~L~L--s~N~l~---~~~~~~~~--~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~ll~~~L~L 624 (929)
.. .-|++|.= ..-.++ +.-...+. ...........+.+.|++++-+++ .+|...... ..-.....++
T Consensus 317 i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~Vnf 395 (565)
T KOG0472|consen 317 ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNF 395 (565)
T ss_pred HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEec
Confidence 11 11222210 000111 00000000 111122334556788888888887 566554332 2222346777
Q ss_pred cCcccCCCCcccccCCCCCcE-EEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhh
Q 045967 625 NNNELEGANPQSLVNCTKLEV-LDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKL 703 (929)
Q Consensus 625 s~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l 703 (929)
+.|++... |..+..++.+.+ +++++|.+ +.+|..++.+++|..|+|++|.+. .+|.+.+.
T Consensus 396 skNqL~el-Pk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln---------------~LP~e~~~-- 456 (565)
T KOG0472|consen 396 SKNQLCEL-PKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN---------------DLPEEMGS-- 456 (565)
T ss_pred ccchHhhh-hhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh---------------hcchhhhh--
Confidence 88877644 555554444443 34444444 455777777777777766666553 56654422
Q ss_pred hcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCC
Q 045967 704 NAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGK 783 (929)
Q Consensus 704 ~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ 783 (929)
+..|+.||+|.|+|. .+|..+..+..|+.+-.++|++...
T Consensus 457 ---------------------------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 457 ---------------------------------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred ---------------------------------------hhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence 445788888888887 7888888888888888888999877
Q ss_pred CCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCc
Q 045967 784 IPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLD 829 (929)
Q Consensus 784 ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~ 829 (929)
.|+.+.++.+|..|||.+|.+. .+|..++++++|++|++.+|+|.
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 7777999999999999999998 78889999999999999999997
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-34 Score=310.84 Aligned_cols=379 Identities=26% Similarity=0.323 Sum_probs=257.6
Q ss_pred CCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCCCCCCCcccccc
Q 045967 360 NNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIFE 437 (929)
Q Consensus 360 ~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~ 437 (929)
...+.|..|...+.|++++|.++..-+..|.++++|+++++.+|.++ .+|.+ ...+|+.|+|.+|.|+..-.+.+..
T Consensus 69 ~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 69 KSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred ccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHh
Confidence 34556778888888999999998888888999999999999999988 45554 4566888888888888777777888
Q ss_pred CCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccC-CCCCcceeeccccCCCCCCh-hhhcccccc
Q 045967 438 LVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKFSYLSLFACNISAFPS-FLRTQDKLF 515 (929)
Q Consensus 438 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~lp~-~l~~~~~L~ 515 (929)
++.|+.|||+.|.++.+.. ..|..-.++++|+|++|.|+..+.- .+ .+.+|..|.|+.|+++.+|. .|+++++|+
T Consensus 148 l~alrslDLSrN~is~i~~-~sfp~~~ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPK-PSFPAKVNIKKLNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred HhhhhhhhhhhchhhcccC-CCCCCCCCceEEeeccccccccccc--cccccchheeeecccCcccccCHHHhhhcchhh
Confidence 8888888888888877644 5666666777777777755422211 11 22233344444444443332 222233333
Q ss_pred eeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCE
Q 045967 516 YLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDV 595 (929)
Q Consensus 516 ~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~ 595 (929)
.|+|..|++. -.. .-.|.++++|+.
T Consensus 225 ~LdLnrN~ir--------------------------ive-----------------------------~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 225 SLDLNRNRIR--------------------------IVE-----------------------------GLTFQGLPSLQN 249 (873)
T ss_pred hhhcccccee--------------------------eeh-----------------------------hhhhcCchhhhh
Confidence 3333333332 111 112333444444
Q ss_pred EeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeecccc
Q 045967 596 LDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSN 675 (929)
Q Consensus 596 L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 675 (929)
|.+..|++...-...|..+... ++|+|+.|++...-..++-++++|+.|++|+|.|..+.++..+.+++|++|+|++|
T Consensus 250 lklqrN~I~kL~DG~Fy~l~km--e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKM--EHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhhhcCcccccCcceeeeccc--ceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 4455554443333333333332 34555555555555556667777777777777777777777777777777666666
Q ss_pred ccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccc
Q 045967 676 KLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNG 755 (929)
Q Consensus 676 ~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 755 (929)
+++ .++++.|..+..|+.|++++|.+.++....|.. +++|+.|||++|.
T Consensus 328 ~i~---------------~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~----------------lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 328 RIT---------------RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG----------------LSSLHKLDLRSNE 376 (873)
T ss_pred ccc---------------cCChhHHHHHHHhhhhcccccchHHHHhhHHHH----------------hhhhhhhcCcCCe
Confidence 655 677777888888888888888887776554433 7888999999999
Q ss_pred cCcccc---hhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccC
Q 045967 756 FDGEIS---QVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGP 831 (929)
Q Consensus 756 l~~~ip---~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~ 831 (929)
+++.|. ..|.+|++|+.|+|.+|++....-..|..+..||.|||.+|.|-.+-|.+|..+ .|+.|-+..-.+-+.
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD 454 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEe
Confidence 887664 347789999999999999996666789999999999999999998889999988 788887765555443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-36 Score=316.33 Aligned_cols=455 Identities=28% Similarity=0.412 Sum_probs=313.3
Q ss_pred chhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEe
Q 045967 231 VFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLH 310 (929)
Q Consensus 231 ~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~ 310 (929)
++.+.+.++..+++|++++|.+ ..+|++++.+..++.|+.++|+++ .+|..++.+.+|+.|+
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l-----------------~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKL-----------------SQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hccHhhhcccceeEEEeccchh-----------------hhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 3567788899999999999976 346777888888999999999887 4888899999999999
Q ss_pred ccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCC-----CcEEEcCCCCCCCCC
Q 045967 311 LMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSH-----EMLIRLNNNSLSGTI 385 (929)
Q Consensus 311 Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~-----L~~L~Ls~N~l~~~~ 385 (929)
.++|.+. .+|++++.+..|+.|+..+|+++..+++++++.+|..+++.+|+++...|.. |+++|...|.+. .+
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cC
Confidence 9999888 6788888999999999999999887777888888989999998887544433 555555555554 45
Q ss_pred CccccCCCCCcEEEcccccCCCCCCCC-CCCCCcEEEecCCCCCCCCccccc-cCCCCcEEeccCCCCcCccchhhhhcc
Q 045967 386 PSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIF-ELVNLIDLQLDSNNFSGIAEPYMFAKL 463 (929)
Q Consensus 386 p~~l~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l 463 (929)
|+.++.+.+|+.|+|..|++.. .|++ .+..|++|+++.|++. .+|.+.. ++.++..|||.+|+++.. |..+.-+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~-lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~--Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRF-LPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEV--PDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhccccc-CCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccC--chHHHHh
Confidence 5566666666666666666552 2333 5555555555555554 4444433 455555555555555554 2444455
Q ss_pred CcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEE
Q 045967 464 IKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYL 543 (929)
Q Consensus 464 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L 543 (929)
.+|+.||+++| .++.+|..++++ .|+.|.+.+|.+...--+-+..+...-|++|
T Consensus 275 rsL~rLDlSNN-------------------------~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 275 RSLERLDLSNN-------------------------DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL 328 (565)
T ss_pred hhhhhhcccCC-------------------------ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence 55555555555 455677777777 7777777777665221111111111112222
Q ss_pred e-------ccccc---cccc--cc------CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCC---CCEEeCCCCc
Q 045967 544 N-------LSHNF---ITKM--KQ------ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIA---LDVLDLSNNR 602 (929)
Q Consensus 544 ~-------Ls~N~---l~~~--~~------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~---L~~L~Ls~N~ 602 (929)
. ++.-. -+.. ++ ....+.+.|++++-+++ .+|..+..... ....+++.|+
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt---------~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT---------LVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc---------cCCHHHHHHhhhcceEEEecccch
Confidence 1 11110 0000 00 12345778888888775 45555444333 7889999999
Q ss_pred CcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccc
Q 045967 603 LSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLR 682 (929)
Q Consensus 603 l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~ 682 (929)
+. ++|..+..+..+ ...+.+++|.+. .+|..+..+++|..|+|++|-+.+. |..++.+..||.|+++.|+|.
T Consensus 400 L~-elPk~L~~lkel-vT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr---- 471 (565)
T KOG0472|consen 400 LC-ELPKRLVELKEL-VTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFR---- 471 (565)
T ss_pred Hh-hhhhhhHHHHHH-HHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhc-chhhhhhhhhheecccccccc----
Confidence 98 899888777663 346777777665 5577889999999999999988765 888899989998888888775
Q ss_pred eeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccch
Q 045967 683 ILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQ 762 (929)
Q Consensus 683 ~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~ 762 (929)
.+|.-+ .. +..++.+-.++|++...-|.
T Consensus 472 -----------~lP~~~-y~----------------------------------------lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 472 -----------MLPECL-YE----------------------------------------LQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred -----------cchHHH-hh----------------------------------------HHHHHHHHhccccccccChH
Confidence 566432 11 22344455566777766666
Q ss_pred hhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCC
Q 045967 763 VIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLA 805 (929)
Q Consensus 763 ~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls 805 (929)
.+.++.+|..|||.+|.+. .+|..++++++|++|+|++|.+.
T Consensus 500 ~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 6889999999999999998 78889999999999999999998
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=5.2e-34 Score=324.63 Aligned_cols=459 Identities=28% Similarity=0.328 Sum_probs=285.2
Q ss_pred CceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCC
Q 045967 241 KLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHI 320 (929)
Q Consensus 241 ~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 320 (929)
+|+.||+++|.+ +.+|..+..+.+|+.|+++.|.+.. .|.+..++.+|++|+|.+|.+. ..
T Consensus 46 ~L~~l~lsnn~~-----------------~~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~-~l 106 (1081)
T KOG0618|consen 46 KLKSLDLSNNQI-----------------SSFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQ-SL 106 (1081)
T ss_pred eeEEeecccccc-----------------ccCCchhhhHHHHhhcccchhhHhh-Cchhhhhhhcchhheeccchhh-cC
Confidence 477777777754 3455666667777777777777653 6677777777777777777766 56
Q ss_pred ccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCC-CcEEEcCCCCCCCCCCccccCCCCCcEEE
Q 045967 321 PSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSH-EMLIRLNNNSLSGTIPSWLFSLPLLEYVR 399 (929)
Q Consensus 321 p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 399 (929)
|.++..+++|++|++++|++...++-+..++.+..+..++|.....++.. .+.+++..|.+.+.++..+..+..
T Consensus 107 P~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~----- 181 (1081)
T KOG0618|consen 107 PASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH----- 181 (1081)
T ss_pred chhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe-----
Confidence 77777777777777777777644444667777777777777222111111 334444444444444443333333
Q ss_pred cccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCC
Q 045967 400 LSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLG 479 (929)
Q Consensus 400 Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 479 (929)
.|+|.+|.+. -..+.++.+|+.|....|++.... -..++|+.|+.++|.+.
T Consensus 182 -------------------~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~-- 232 (1081)
T KOG0618|consen 182 -------------------QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLT-- 232 (1081)
T ss_pred -------------------eeecccchhh---hhhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcce--
Confidence 4555555544 123445555666666666555432 13356666666666443
Q ss_pred ccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc--CC
Q 045967 480 TTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ--IS 557 (929)
Q Consensus 480 ~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~--~~ 557 (929)
.........+|++++++.++++.+|+|++.+.+|+.++..+|.+. .+|..+ ....+|+.|.+..|.+..+++ ..
T Consensus 233 -~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri--~~~~~L~~l~~~~nel~yip~~le~ 308 (1081)
T KOG0618|consen 233 -TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRI--SRITSLVSLSAAYNELEYIPPFLEG 308 (1081)
T ss_pred -eeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHH--hhhhhHHHHHhhhhhhhhCCCcccc
Confidence 111112344677777777777788888899999999999988884 455555 455677777777777766665 34
Q ss_pred CCCccEEEcCCCCCCCCCCCCCCcccchhhhc-cC-CCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcc
Q 045967 558 WKNLGYLDLRSNLLQGPLPVPPSREIIHSICD-II-ALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQ 635 (929)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~-l~-~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~ 635 (929)
++.|+.|+|..|++. .+|+.+-. .. .|..|+.+.|++. .....
T Consensus 309 ~~sL~tLdL~~N~L~---------~lp~~~l~v~~~~l~~ln~s~n~l~--------------------------~lp~~ 353 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLP---------SLPDNFLAVLNASLNTLNVSSNKLS--------------------------TLPSY 353 (1081)
T ss_pred cceeeeeeehhcccc---------ccchHHHhhhhHHHHHHhhhhcccc--------------------------ccccc
Confidence 566666666666663 33332211 11 1333344444333 22111
Q ss_pred cccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCc
Q 045967 636 SLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGK 715 (929)
Q Consensus 636 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~ 715 (929)
.=...+.|+.|++.+|.+++..-..+.++++|++|+|++|++. .+|+..+.++..|+.|++++|+
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~---------------~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN---------------SFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc---------------cCCHHHHhchHHhHHHhcccch
Confidence 1123456777777777777776666777777777777776664 6777777777777777777776
Q ss_pred ccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCC-CCCccccCcCCC
Q 045967 716 LRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTG-KIPSSLGNLAKL 794 (929)
Q Consensus 716 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~-~ip~~l~~L~~L 794 (929)
++.++.. ...+..|++|...+|++. ..| ++.+++.|+.+|+|.|+++. .+|..... ++|
T Consensus 419 L~~Lp~t-----------------va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~L 478 (1081)
T KOG0618|consen 419 LTTLPDT-----------------VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNL 478 (1081)
T ss_pred hhhhhHH-----------------HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-ccc
Confidence 6655421 112566777778888877 556 78888888888888888874 34443332 788
Q ss_pred CEeeCCCCcCCCCCchhhccCCCCCEEECccC
Q 045967 795 ESLDLSSNNLAGKIPKQLASLTSLSVLNISHN 826 (929)
Q Consensus 795 ~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N 826 (929)
++|||++|.=...--..|..+.++..+++.-|
T Consensus 479 kyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 479 KYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 88888888744344556677777777777766
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-32 Score=296.78 Aligned_cols=372 Identities=23% Similarity=0.264 Sum_probs=272.2
Q ss_pred CCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCccee
Q 045967 415 KSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYL 494 (929)
Q Consensus 415 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L 494 (929)
..-+.|++++|++....+..|.++++|+++++..|.++.+ | .......+|+.|+|.+|.|.
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~I-P-~f~~~sghl~~L~L~~N~I~----------------- 138 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRI-P-RFGHESGHLEKLDLRHNLIS----------------- 138 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhc-c-cccccccceeEEeeeccccc-----------------
Confidence 3445677777777666666667777777777777776655 1 22233334666666666432
Q ss_pred eccccCCCCC-ChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCC---CCCccEEEcCCCC
Q 045967 495 SLFACNISAF-PSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQIS---WKNLGYLDLRSNL 570 (929)
Q Consensus 495 ~L~~n~l~~l-p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~ 570 (929)
++ .+.+..++.|+.||||.|.++...-..| ..-.++++|+|++|.|+.+.... +.+|..|.|+.|+
T Consensus 139 --------sv~se~L~~l~alrslDLSrN~is~i~~~sf--p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 139 --------SVTSEELSALPALRSLDLSRNLISEIPKPSF--PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred --------cccHHHHHhHhhhhhhhhhhchhhcccCCCC--CCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 22 2345556667777777777765444444 34456777888888777776633 4567778888888
Q ss_pred CCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccC
Q 045967 571 LQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGN 650 (929)
Q Consensus 571 l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 650 (929)
++ .--+..|.+++.|+.|+|..|++.-.---.|.++.++ +.+.+..|.+.......|-.+.++++|+|+.
T Consensus 209 it--------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl--~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 209 IT--------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL--QNLKLQRNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred cc--------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh--hhhhhhhcCcccccCcceeeecccceeeccc
Confidence 86 2233566678999999999998873323445666653 4788888888888888888889999999999
Q ss_pred CcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEE
Q 045967 651 NKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVV 730 (929)
Q Consensus 651 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~ 730 (929)
|++...-..|+-++++|+.|++++|.|. .|.....+..+.|+.|+++.|+++.+++..+..
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~NaI~---------------rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~---- 339 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYNAIQ---------------RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV---- 339 (873)
T ss_pred chhhhhhcccccccchhhhhccchhhhh---------------eeecchhhhcccceeEeccccccccCChhHHHH----
Confidence 9988888888888888888888877765 344445567789999999999999888765543
Q ss_pred EecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCc---cccCcCCCCEeeCCCCcCCCC
Q 045967 731 TLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPS---SLGNLAKLESLDLSSNNLAGK 807 (929)
Q Consensus 731 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~---~l~~L~~L~~LdLs~N~ls~~ 807 (929)
+..|+.|+|++|.++..-...|..+++|++|||++|.++..|.+ .|..|++|+.|+|.+|+|..+
T Consensus 340 ------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 340 ------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred ------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence 88999999999999987788899999999999999999876653 578899999999999999987
Q ss_pred CchhhccCCCCCEEECccCcCccCCCCCCCCCccccccccCCcCCCCCC
Q 045967 808 IPKQLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSYIGNLGLCGFS 856 (929)
Q Consensus 808 ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~Lcg~~ 856 (929)
...+|.++..|++|||.+|.|...-|....-..+++.-+..-..||+..
T Consensus 408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQ 456 (873)
T ss_pred chhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEecc
Confidence 7789999999999999999997655543221233444444455567643
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.2e-32 Score=296.92 Aligned_cols=360 Identities=28% Similarity=0.425 Sum_probs=261.8
Q ss_pred CCCCcEEECCCCCCCC-CCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEe
Q 045967 279 LKLLGRLMLGYSQFVG-PVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFD 357 (929)
Q Consensus 279 l~~L~~L~Ls~n~l~~-~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~ 357 (929)
|+..+-.|+++|.|+| .+|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++....-.+..++.|+.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 4455566666666663 36666666777777777666665 566777777777777777777665555566667777777
Q ss_pred CCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC-CCCCCcEEEecCCCCCCCCccc-c
Q 045967 358 LSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSS-I 435 (929)
Q Consensus 358 Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~-l 435 (929)
+..|++.. ..+|..+..+..|..||||+|++....... ..+++-.|+|++|+|. .||.. |
T Consensus 85 ~R~N~LKn-----------------sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lf 146 (1255)
T KOG0444|consen 85 VRDNNLKN-----------------SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLF 146 (1255)
T ss_pred hhcccccc-----------------CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHH
Confidence 77666652 245666666777777777777766433332 4566667777777776 44443 4
Q ss_pred ccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCC--CCChhhhcccc
Q 045967 436 FELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNIS--AFPSFLRTQDK 513 (929)
Q Consensus 436 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~--~lp~~l~~~~~ 513 (929)
.+++.|-.|||++|++.... ..+..+..|++|+|++|++.... ....-.+.+|+.|.+++.+-+ .+|..+..+.+
T Consensus 147 inLtDLLfLDLS~NrLe~LP--PQ~RRL~~LqtL~Ls~NPL~hfQ-LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 147 INLTDLLFLDLSNNRLEMLP--PQIRRLSMLQTLKLSNNPLNHFQ-LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN 223 (1255)
T ss_pred HhhHhHhhhccccchhhhcC--HHHHHHhhhhhhhcCCChhhHHH-HhcCccchhhhhhhcccccchhhcCCCchhhhhh
Confidence 46777777777777776653 35667777777777777543111 000113455666667766544 78999999999
Q ss_pred cceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc--CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccC
Q 045967 514 LFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDII 591 (929)
Q Consensus 514 L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~--~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~ 591 (929)
|..+|+|.|.+. .+|+.+ ..+++|+.|+||+|.++.+.. ..|.+|+.|++|.|+++ .+|..+++++
T Consensus 224 L~dvDlS~N~Lp-~vPecl--y~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt---------~LP~avcKL~ 291 (1255)
T KOG0444|consen 224 LRDVDLSENNLP-IVPECL--YKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT---------VLPDAVCKLT 291 (1255)
T ss_pred hhhccccccCCC-cchHHH--hhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc---------cchHHHhhhH
Confidence 999999999987 678877 788999999999999998765 67889999999999996 6889999999
Q ss_pred CCCEEeCCCCcCc-CCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCcee
Q 045967 592 ALDVLDLSNNRLS-GTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVL 670 (929)
Q Consensus 592 ~L~~L~Ls~N~l~-~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 670 (929)
.|+.|.+.+|+++ .-+|..++++..+ ..+..++|.+. ..|+.+..|..|+.|.|++|++... |+++.-++.|+.|
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~L--evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQL--EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVL 367 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhh--HHHHhhccccc-cCchhhhhhHHHHHhcccccceeec-hhhhhhcCCccee
Confidence 9999999999887 4588999988874 46777777776 5688999999999999999998764 8888889999999
Q ss_pred eccccc
Q 045967 671 VLRSNK 676 (929)
Q Consensus 671 ~Ls~N~ 676 (929)
|++.|.
T Consensus 368 DlreNp 373 (1255)
T KOG0444|consen 368 DLRENP 373 (1255)
T ss_pred eccCCc
Confidence 999985
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=4.6e-32 Score=308.81 Aligned_cols=462 Identities=25% Similarity=0.301 Sum_probs=352.9
Q ss_pred cccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCC
Q 045967 270 SELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVN 349 (929)
Q Consensus 270 g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~ 349 (929)
..||..+-.-..++.|+++.|.+....-+.+.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.+........+
T Consensus 11 ~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~ 89 (1081)
T KOG0618|consen 11 ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSSCSN 89 (1081)
T ss_pred cccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchhhhh
Confidence 446666655566888888888765432233445556889999888877 6788888888899999988888765555788
Q ss_pred CCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCCC
Q 045967 350 LTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRL 427 (929)
Q Consensus 350 L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l 427 (929)
+.+|++|.|.+|.+. ..|.++..+.+|++|++++|++.. +|.. .+..++.+..++|..
T Consensus 90 ~~~l~~lnL~~n~l~-------------------~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~ 149 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRLQ-------------------SLPASISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEK 149 (1081)
T ss_pred hhcchhheeccchhh-------------------cCchhHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchh
Confidence 888888888888876 678888888888888888888873 3333 667777777777722
Q ss_pred CCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChh
Q 045967 428 QGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSF 507 (929)
Q Consensus 428 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~ 507 (929)
.. .++... ++.+++..|.+.+.+. ..+..++. .|+|.+|.+. -..
T Consensus 150 ~~----~lg~~~-ik~~~l~~n~l~~~~~-~~i~~l~~--~ldLr~N~~~---------------------------~~d 194 (1081)
T KOG0618|consen 150 IQ----RLGQTS-IKKLDLRLNVLGGSFL-IDIYNLTH--QLDLRYNEME---------------------------VLD 194 (1081)
T ss_pred hh----hhcccc-chhhhhhhhhcccchh-cchhhhhe--eeecccchhh---------------------------hhh
Confidence 21 222222 7777777777776654 34444444 5777777432 122
Q ss_pred hhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCC-CCCccEEEcCCCCCCCCCCCCCCcccchh
Q 045967 508 LRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQIS-WKNLGYLDLRSNLLQGPLPVPPSREIIHS 586 (929)
Q Consensus 508 l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~ 586 (929)
+..+.+|+.+....|++.... ...++|+.|+.++|.++...... ..+|+++++++|+++ .+|++
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~------~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~---------~lp~w 259 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELE------ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS---------NLPEW 259 (1081)
T ss_pred hhhccchhhhhhhhcccceEE------ecCcchheeeeccCcceeeccccccccceeeecchhhhh---------cchHH
Confidence 456677888888888776321 23478999999999998666543 358999999999995 67899
Q ss_pred hhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCC
Q 045967 587 ICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPE 666 (929)
Q Consensus 587 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 666 (929)
++.+.+|+.++..+|+++ .+|..+.....+ +.+.+..|.+... |....++++|++|||..|++....+..+..+..
T Consensus 260 i~~~~nle~l~~n~N~l~-~lp~ri~~~~~L--~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLV-ALPLRISRITSL--VSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred HHhcccceEecccchhHH-hhHHHHhhhhhH--HHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 999999999999999996 788877777664 5888999999866 556788999999999999998776555555544
Q ss_pred -Cceeeccccccccc----------cceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCc
Q 045967 667 -LRVLVLRSNKLRGS----------LRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGT 735 (929)
Q Consensus 667 -L~~L~Ls~N~l~~~----------L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~ 735 (929)
|+.|+.+.|++... |+.|.+.+|.++...- ..+.+...|+.|++++|++..++...+
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~-p~l~~~~hLKVLhLsyNrL~~fpas~~----------- 403 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF-PVLVNFKHLKVLHLSYNRLNSFPASKL----------- 403 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch-hhhccccceeeeeecccccccCCHHHH-----------
Confidence 78888888887642 8999999999986543 246788999999999999877764322
Q ss_pred hhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCC-Cchhhcc
Q 045967 736 EIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGK-IPKQLAS 814 (929)
Q Consensus 736 ~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~-ip~~l~~ 814 (929)
..+..|+.|+||+|+++ .+|..+.++..|++|...+|++. ..| .+.++++|+.+|+|.|+|+.. +|.....
T Consensus 404 -----~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 404 -----RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred -----hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 23788999999999999 78899999999999999999999 777 789999999999999999854 3444333
Q ss_pred CCCCCEEECccCc
Q 045967 815 LTSLSVLNISHNR 827 (929)
Q Consensus 815 L~~L~~L~Ls~N~ 827 (929)
+.|++||+++|.
T Consensus 476 -p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 -PNLKYLDLSGNT 487 (1081)
T ss_pred -cccceeeccCCc
Confidence 799999999997
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.4e-31 Score=286.83 Aligned_cols=367 Identities=25% Similarity=0.298 Sum_probs=305.8
Q ss_pred CCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCC
Q 045967 238 NMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 317 (929)
Q Consensus 238 ~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~ 317 (929)
-++-++-.|+++|.++| +.+|..+..+++++.|.|...++. .+|+.++.|.+|++|.+++|++.
T Consensus 5 VLpFVrGvDfsgNDFsg---------------~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~ 68 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSG---------------DRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI 68 (1255)
T ss_pred ccceeecccccCCcCCC---------------CcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH
Confidence 35678999999999974 356777788899999999998876 48999999999999999999988
Q ss_pred CCCccccCCCCCCCEEEccCCcCC--CCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCC
Q 045967 318 SHIPSSLSNLVQLTCLDLSGNSFV--GEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLL 395 (929)
Q Consensus 318 ~~~p~~l~~L~~L~~L~Ls~N~l~--~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L 395 (929)
.+-..+..++.|+.+++.+|++. |.++++..|..|..|||++|+++ ..|..+..-+++
T Consensus 69 -~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------------------EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 69 -SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------------------EVPTNLEYAKNS 128 (1255)
T ss_pred -hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-------------------hcchhhhhhcCc
Confidence 45567889999999999999884 56667999999999999999998 778888888899
Q ss_pred cEEEcccccCCCCCCCC---CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEcc
Q 045967 396 EYVRLSDNQLSGHIDEF---PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYIS 472 (929)
Q Consensus 396 ~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 472 (929)
-.|+||+|+|.. ||.. +++.|-.|||++|++. .+|..+..+..|++|+|++|.+.-..- ..+-.+++|+.|.++
T Consensus 129 iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 129 IVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLHMS 205 (1255)
T ss_pred EEEEcccCcccc-CCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhhcc
Confidence 999999999884 4443 7788889999999997 788889999999999999998754321 334456677788888
Q ss_pred CCCCCCCccccccC-CCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEeccccccc
Q 045967 473 HNSLSLGTTFKIDI-PFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFIT 551 (929)
Q Consensus 473 ~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~ 551 (929)
+.+ .....+|..+ .+.+|..++++.|++..+|+.+.++.+|+.|+||+|+++..-. .. ....+|++|++|.|+++
T Consensus 206 ~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~-~~--~~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 206 NTQ-RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM-TE--GEWENLETLNLSRNQLT 281 (1255)
T ss_pred ccc-chhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec-cH--HHHhhhhhhccccchhc
Confidence 765 2234455555 7889999999999999999999999999999999999985322 22 34468999999999999
Q ss_pred cccc--CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCccc
Q 045967 552 KMKQ--ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNEL 629 (929)
Q Consensus 552 ~~~~--~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l 629 (929)
.++. ..++.|+.|.+.+|+++- ..+|++++++.+|+++..++|++. .+|+.++.+..+ +.|.|+.|.+
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~F-------eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL--~kL~L~~NrL 351 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTF-------EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL--QKLKLDHNRL 351 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccc-------cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH--HHhcccccce
Confidence 9887 567899999999999873 568999999999999999999997 899999999874 5899999998
Q ss_pred CCCCcccccCCCCCcEEEccCCcCCCCCc
Q 045967 630 EGANPQSLVNCTKLEVLDIGNNKINDVFP 658 (929)
Q Consensus 630 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 658 (929)
.. .|+.+.-++.|++||+.+|.---..|
T Consensus 352 iT-LPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 352 IT-LPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ee-chhhhhhcCCcceeeccCCcCccCCC
Confidence 74 48899999999999999996554444
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=3e-20 Score=237.36 Aligned_cols=323 Identities=21% Similarity=0.252 Sum_probs=163.8
Q ss_pred CCccccCCC-CCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhcc
Q 045967 385 IPSWLFSLP-LLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKL 463 (929)
Q Consensus 385 ~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 463 (929)
+|..+..++ +|+.|++.++.+........+.+|+.|++.+|++. .++..+..+++|+.|+|+++...+.+| .+..+
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l 656 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMA 656 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC--ccccC
Confidence 444454443 46666666666554333335566666666666665 455556666666667766654333333 25556
Q ss_pred CcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEE
Q 045967 464 IKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYL 543 (929)
Q Consensus 464 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L 543 (929)
++|+.|++++|. . +..+|..+..+++|+.|++++|...+.+|..+ .+++|+.|
T Consensus 657 ~~Le~L~L~~c~--~----------------------L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L 709 (1153)
T PLN03210 657 TNLETLKLSDCS--S----------------------LVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRL 709 (1153)
T ss_pred CcccEEEecCCC--C----------------------ccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEE
Confidence 666666666552 1 22455556666666666666655444455432 45566666
Q ss_pred ecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceee
Q 045967 544 NLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLN 623 (929)
Q Consensus 544 ~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~ 623 (929)
++++|...+..+....+|++|++++|.+. .+|..+ .+++|+.|++.++... .+...+..
T Consensus 710 ~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~---------~lP~~~-~l~~L~~L~l~~~~~~-~l~~~~~~---------- 768 (1153)
T PLN03210 710 NLSGCSRLKSFPDISTNISWLDLDETAIE---------EFPSNL-RLENLDELILCEMKSE-KLWERVQP---------- 768 (1153)
T ss_pred eCCCCCCccccccccCCcCeeecCCCccc---------cccccc-cccccccccccccchh-hccccccc----------
Confidence 66666444333333456666666666653 333332 3556666666554321 11110000
Q ss_pred ccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhh
Q 045967 624 LNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKL 703 (929)
Q Consensus 624 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l 703 (929)
..+......++|+.|++++|...+.+|.+++++++|+.|++++|... +.+|... ++
T Consensus 769 --------l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L--------------~~LP~~~--~L 824 (1153)
T PLN03210 769 --------LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL--------------ETLPTGI--NL 824 (1153)
T ss_pred --------cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc--------------CeeCCCC--Cc
Confidence 00011112234444444444444444444444444444444333210 1222211 23
Q ss_pred hcccccccCCCc-ccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCC
Q 045967 704 NAMRNVGADEGK-LRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTG 782 (929)
Q Consensus 704 ~~L~~L~ls~n~-l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~ 782 (929)
++|+.|++++|. +..++ ....+|+.|+|++|.++ .+|..+..+++|+.|+|++|+-..
T Consensus 825 ~sL~~L~Ls~c~~L~~~p--------------------~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFP--------------------DISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred cccCEEECCCCCcccccc--------------------ccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence 333333333321 00110 01345677777777776 567777777777777777743333
Q ss_pred CCCccccCcCCCCEeeCCCCc
Q 045967 783 KIPSSLGNLAKLESLDLSSNN 803 (929)
Q Consensus 783 ~ip~~l~~L~~L~~LdLs~N~ 803 (929)
.+|..+..+++|+.|++++|.
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCcccccccCCCeeecCCCc
Confidence 566667777777777777764
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=5.3e-20 Score=235.10 Aligned_cols=336 Identities=21% Similarity=0.211 Sum_probs=218.1
Q ss_pred ccccCCCCCCCEEeccCcc------CCCCCccccCCCC-CCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCC
Q 045967 297 PASLGNLTQLTLLHLMHNN------FSSHIPSSLSNLV-QLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPS 369 (929)
Q Consensus 297 p~~~~~l~~L~~L~Ls~n~------l~~~~p~~l~~L~-~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~ 369 (929)
+..|.++++|+.|.+..+. +...+|..+..++ +|+.|++.++.+... |.-....+|+.|++.+|++.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f~~~~L~~L~L~~s~l~----- 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNFRPENLVKLQMQGSKLE----- 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcCCccCCcEEECcCcccc-----
Confidence 3456777778887776553 2234566666654 577888877776543 33224567777777776665
Q ss_pred CCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC-CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccC
Q 045967 370 HEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDS 448 (929)
Q Consensus 370 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 448 (929)
.++..+..+++|+.|+|+++...+.+|.. .+++|++|+|++|.....+|..+.++++|+.|++++
T Consensus 625 --------------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 625 --------------KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred --------------ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 45566677888888888877654555554 677888888888766667888888888888888888
Q ss_pred CCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCC--
Q 045967 449 NNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDG-- 526 (929)
Q Consensus 449 N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~-- 526 (929)
|...+.+| ..+ ++++|+.|++++| ...+.++. ...+|+.|++.+|.+..+|..+ .+++|++|++.++....
T Consensus 691 c~~L~~Lp-~~i-~l~sL~~L~Lsgc--~~L~~~p~--~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 691 CENLEILP-TGI-NLKSLYRLNLSGC--SRLKSFPD--ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCcCccC-CcC-CCCCCCEEeCCCC--CCcccccc--ccCCcCeeecCCCccccccccc-cccccccccccccchhhcc
Confidence 75444444 222 6788888888887 33333332 2356778888888887777655 46777777776643211
Q ss_pred -----CCchhhhccCCCCccEEeccccccccccc---CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeC
Q 045967 527 -----QIPRWISKIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDL 598 (929)
Q Consensus 527 -----~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~L 598 (929)
..+... ...++|+.|++++|......| ..+++|+.|++++|... +.+|..+ ++++|+.|++
T Consensus 764 ~~~~~l~~~~~--~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L--------~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 764 ERVQPLTPLMT--MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL--------ETLPTGI-NLESLESLDL 832 (1153)
T ss_pred ccccccchhhh--hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc--------CeeCCCC-CccccCEEEC
Confidence 111111 234567777777775544444 45667777777776544 3445444 5677888888
Q ss_pred CCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccc
Q 045967 599 SNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNK 676 (929)
Q Consensus 599 s~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 676 (929)
++|.....+|....+ + ..|++++|.++. +|.++..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 833 s~c~~L~~~p~~~~n----L-~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 833 SGCSRLRTFPDISTN----I-SDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCccccccccccc----c-CEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 887655555543322 1 367788887764 46777788888888888754434456667778888888887774
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.1e-19 Score=215.86 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=64.0
Q ss_pred ccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEEC
Q 045967 744 TVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNI 823 (929)
Q Consensus 744 ~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~L 823 (929)
.+|+.|++++|++++ +|.. .++|+.|++++|+++ .+|... .+|+.|++++|+|+ .+|..+.+++.|+.|++
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 457788888888884 5543 357888899999888 466543 46788899999988 67888888888999999
Q ss_pred ccCcCccCCCC
Q 045967 824 SHNRLDGPIPQ 834 (929)
Q Consensus 824 s~N~l~g~iP~ 834 (929)
++|+|+|.+|.
T Consensus 453 s~N~Ls~~~~~ 463 (788)
T PRK15387 453 EGNPLSERTLQ 463 (788)
T ss_pred CCCCCCchHHH
Confidence 99999887775
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=4.9e-22 Score=207.75 Aligned_cols=409 Identities=21% Similarity=0.188 Sum_probs=244.8
Q ss_pred CCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecC-CCCCCCCccccccCCCCc
Q 045967 366 PVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSN-NRLQGSIPSSIFELVNLI 442 (929)
Q Consensus 366 ~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~ 442 (929)
.+|.....++|..|.|+...|..|+.+++|+.|||++|+|+..-|.. .+.+|..|.+.+ |+|+..-...|.++..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 45666777888888888777788888888888888888888655554 566665555444 777755556677777788
Q ss_pred EEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCCh-hhhcccccceeccCC
Q 045967 443 DLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPS-FLRTQDKLFYLDLSE 521 (929)
Q Consensus 443 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~l~~~~~L~~L~Ls~ 521 (929)
.|.+.-|++.-+.. ..|..+++|..|.+.+|.+. .++. .+..+..++.+.+..
T Consensus 144 rLllNan~i~Cir~-~al~dL~~l~lLslyDn~~q-------------------------~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 144 RLLLNANHINCIRQ-DALRDLPSLSLLSLYDNKIQ-------------------------SICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred HHhcChhhhcchhH-HHHHHhhhcchhcccchhhh-------------------------hhccccccchhccchHhhhc
Confidence 88877777776654 67777777777777777443 2222 233344444444444
Q ss_pred CcCCC------------CCchhhhccCCCCccEEecccccccccccCCC----CCccEEEcCCCCCCCCCCCCCCcccc-
Q 045967 522 SKIDG------------QIPRWISKIGKDSLSYLNLSHNFITKMKQISW----KNLGYLDLRSNLLQGPLPVPPSREII- 584 (929)
Q Consensus 522 N~l~~------------~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~----~~L~~L~Ls~N~l~~~~~~~~~~~~p- 584 (929)
|.+.. ..|..+ +......-..+.++++..+....+ +.+..--.+.+... +..|
T Consensus 198 np~icdCnL~wla~~~a~~~iet--sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d--------~~cP~ 267 (498)
T KOG4237|consen 198 NPFICDCNLPWLADDLAMNPIET--SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPD--------SICPA 267 (498)
T ss_pred CccccccccchhhhHHhhchhhc--ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcC--------CcChH
Confidence 44211 111111 222333333444445544444222 12211111222222 1222
Q ss_pred hhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCC
Q 045967 585 HSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNL 664 (929)
Q Consensus 585 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 664 (929)
..|..+++|++|++++|++++.-+.+|.....+ +.|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l--~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL--QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhh--hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 357889999999999999999889999888874 589999999998888889999999999999999999999999999
Q ss_pred CCCceeeccccccccccc--ee--eCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHh
Q 045967 665 PELRVLVLRSNKLRGSLR--IL--DLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQ 740 (929)
Q Consensus 665 ~~L~~L~Ls~N~l~~~L~--~L--dLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~ 740 (929)
.+|.+|+|-.|.+.-.-+ .| .|..+.-.|..|-. .-..++.+.+++..+...... ..++..... ... ..
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq---~p~~~~~~~~~dv~~~~~~c~-~~ee~~~~~--s~~-cP 418 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ---SPGFVRQIPISDVAFGDFRCG-GPEELGCLT--SSP-CP 418 (498)
T ss_pred ceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCC---CCchhccccchhccccccccC-CccccCCCC--CCC-CC
Confidence 999999999998753210 00 01111212221111 111223333333322111100 000000000 000 00
Q ss_pred hhcccc-cEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCC
Q 045967 741 KILTVF-TTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLS 819 (929)
Q Consensus 741 ~~l~~L-~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~ 819 (929)
...+-+ ++...|+..++ .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+|+|+++..--..|.+++.|.
T Consensus 419 ~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~ 491 (498)
T KOG4237|consen 419 PPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLS 491 (498)
T ss_pred CCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhh
Confidence 001111 12223333333 3343332 23456788888887 66766 56777 788888888866667788888888
Q ss_pred EEECccC
Q 045967 820 VLNISHN 826 (929)
Q Consensus 820 ~L~Ls~N 826 (929)
+|-+|||
T Consensus 492 tlilsyn 498 (498)
T KOG4237|consen 492 TLILSYN 498 (498)
T ss_pred eeEEecC
Confidence 8888876
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=1.8e-19 Score=213.87 Aligned_cols=266 Identities=23% Similarity=0.309 Sum_probs=158.7
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLS 359 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls 359 (929)
..-..|+++.+.++ .+|..+. ++|+.|++++|+++. +|. .+++|++|++++|+++.. |.+ .++|+.|+++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~l--p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PVL--PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cCc--ccccceeecc
Confidence 44567788888777 4777665 478888888888773 453 246788888888877743 432 3567777777
Q ss_pred CCcCCCC--CCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCcccccc
Q 045967 360 NNQLAGP--VPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 437 (929)
Q Consensus 360 ~n~l~~~--~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 437 (929)
+|.++.. +|..|+.|++++|+++. +|.. .++|++|++++|++++. |. ...+|+.|++++|+++ .+|..
T Consensus 271 ~N~L~~Lp~lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~L-p~-lp~~L~~L~Ls~N~L~-~LP~l--- 340 (788)
T PRK15387 271 SNPLTHLPALPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA-LPSELCKLWAYNNQLT-SLPTL--- 340 (788)
T ss_pred CCchhhhhhchhhcCEEECcCCcccc-cccc---ccccceeECCCCccccC-CC-CcccccccccccCccc-ccccc---
Confidence 7776531 22234444444444442 2321 24455555555555532 21 1234555555555554 23321
Q ss_pred CCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhccccccee
Q 045967 438 LVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYL 517 (929)
Q Consensus 438 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L 517 (929)
..+|+.|+|++|+++++.+ . .++|+.|++++|.++.+|.. ..+|+.|
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~--l----------------------------p~~L~~L~Ls~N~L~~LP~l---~~~L~~L 387 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPT--L----------------------------PSELYKLWAYNNRLTSLPAL---PSGLKEL 387 (788)
T ss_pred ccccceEecCCCccCCCCC--C----------------------------CcccceehhhccccccCccc---ccccceE
Confidence 1245555555555544311 1 12344444444555555543 2467778
Q ss_pred ccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEe
Q 045967 518 DLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLD 597 (929)
Q Consensus 518 ~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~ 597 (929)
++++|.+.+ +|.. .++|+.|++++|.+++++. ...+|+.|++++|+++ .+|..++++++|+.|+
T Consensus 388 dLs~N~Lt~-LP~l-----~s~L~~LdLS~N~LssIP~-l~~~L~~L~Ls~NqLt---------~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 388 IVSGNRLTS-LPVL-----PSELKELMVSGNRLTSLPM-LPSGLLSLSVYRNQLT---------RLPESLIHLSSETTVN 451 (788)
T ss_pred EecCCcccC-CCCc-----ccCCCEEEccCCcCCCCCc-chhhhhhhhhccCccc---------ccChHHhhccCCCeEE
Confidence 888887774 4432 2467788888888877543 3457788888888885 5778888888999999
Q ss_pred CCCCcCcCCCccccccC
Q 045967 598 LSNNRLSGTIPECIGNF 614 (929)
Q Consensus 598 Ls~N~l~~~ip~~l~~l 614 (929)
+++|++++..+..+..+
T Consensus 452 Ls~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 452 LEGNPLSERTLQALREI 468 (788)
T ss_pred CCCCCCCchHHHHHHHH
Confidence 99999988877766443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=1.2e-21 Score=204.89 Aligned_cols=415 Identities=20% Similarity=0.223 Sum_probs=221.1
Q ss_pred cccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCc
Q 045967 218 LTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVP 297 (929)
Q Consensus 218 v~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp 297 (929)
|+|+..++.-....+|+ .-+.++|..|.|+...| .+|+.+++||.||||+|+|+..-|
T Consensus 51 VdCr~~GL~eVP~~LP~------~tveirLdqN~I~~iP~----------------~aF~~l~~LRrLdLS~N~Is~I~p 108 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPP------ETVEIRLDQNQISSIPP----------------GAFKTLHRLRRLDLSKNNISFIAP 108 (498)
T ss_pred EEccCCCcccCcccCCC------cceEEEeccCCcccCCh----------------hhccchhhhceecccccchhhcCh
Confidence 77877664322223333 45678888888754433 345666889999999999988888
Q ss_pred cccCCCCCCCEEeccC-ccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCC----CCC--
Q 045967 298 ASLGNLTQLTLLHLMH-NNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGP----VPS-- 369 (929)
Q Consensus 298 ~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~----~p~-- 369 (929)
++|..+.+|..|-+.+ |+|+....+.|++|..|+.|.+.-|++.....+ +..|++|..|.+..|.+... +..
T Consensus 109 ~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~ 188 (498)
T KOG4237|consen 109 DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA 188 (498)
T ss_pred HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchh
Confidence 8999888887776666 888866667888999999999988888866555 77888888888888877521 100
Q ss_pred CCcEEEcCCCCCC------------CCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEE---EecCCCCCCCCcc-
Q 045967 370 HEMLIRLNNNSLS------------GTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNI---YLSNNRLQGSIPS- 433 (929)
Q Consensus 370 ~L~~L~Ls~N~l~------------~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L---~Ls~N~l~~~~p~- 433 (929)
.++.+.+..|.+. ...|..++......-..+.++++....+......++.+ -.+.+...+..|.
T Consensus 189 ~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~ 268 (498)
T KOG4237|consen 189 AIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK 268 (498)
T ss_pred ccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH
Confidence 0333333333311 01122222222222222333332211111111112222 1122223333332
Q ss_pred ccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccC-CCCCcceeeccccCCCCC-Chhhhcc
Q 045967 434 SIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKFSYLSLFACNISAF-PSFLRTQ 511 (929)
Q Consensus 434 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~l-p~~l~~~ 511 (929)
.|..+++|+.|+|++|+++++.+ .+|.++..+++|.|..|++.... ...+ .+..|+.|+|.+|+++.+ |..|...
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~-~aFe~~a~l~eL~L~~N~l~~v~--~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIED-GAFEGAAELQELYLTRNKLEFVS--SGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HHhhcccceEeccCCCccchhhh-hhhcchhhhhhhhcCcchHHHHH--HHhhhccccceeeeecCCeeEEEeccccccc
Confidence 36667777777777777777655 67777777777777777543211 1111 344444455555554422 3344444
Q ss_pred cccceeccCCCcCCCCC-chhhhccCCCCccEEeccccccccccc-CCCCCccEEEcCCCCCCCCCCCCCC--cccchhh
Q 045967 512 DKLFYLDLSESKIDGQI-PRWISKIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRSNLLQGPLPVPPS--REIIHSI 587 (929)
Q Consensus 512 ~~L~~L~Ls~N~l~~~~-p~~l~~~~~~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~--~~~p~~l 587 (929)
..|.+|++-.|.+...- -.|+.. .+..+...+.++ ..-..++.+.++++.+.+.-...+. +-.+...
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~wl~~---------Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~ 416 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAWLGE---------WLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSP 416 (498)
T ss_pred ceeeeeehccCcccCccchHHHHH---------HHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCC
Confidence 44444444444433211 011100 001111122222 1122455666666555421111000 0011111
Q ss_pred --hccCCCCEE-eCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCC
Q 045967 588 --CDIIALDVL-DLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNL 664 (929)
Q Consensus 588 --~~l~~L~~L-~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 664 (929)
..++.+.+. ..|+..+ ..+|..+..-. ..+++.+|.++.+..+ .+.+| .+|+++|+++......|.++
T Consensus 417 cP~~c~c~~tVvRcSnk~l-k~lp~~iP~d~----telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~ 487 (498)
T KOG4237|consen 417 CPPPCTCLDTVVRCSNKLL-KLLPRGIPVDV----TELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNM 487 (498)
T ss_pred CCCCcchhhhhHhhcccch-hhcCCCCCchh----HHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccch
Confidence 123334333 2333333 35555443222 3677888888765333 45666 78888888877767778888
Q ss_pred CCCceeecccc
Q 045967 665 PELRVLVLRSN 675 (929)
Q Consensus 665 ~~L~~L~Ls~N 675 (929)
.+|.+|.|++|
T Consensus 488 tql~tlilsyn 498 (498)
T KOG4237|consen 488 TQLSTLILSYN 498 (498)
T ss_pred hhhheeEEecC
Confidence 88888877765
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=3.5e-18 Score=204.52 Aligned_cols=251 Identities=21% Similarity=0.292 Sum_probs=141.0
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLS 359 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls 359 (929)
.+...|++++++++. +|..+. ++|+.|+|++|+++ .+|..+. .+|++|++++|+++.....+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 456778888877764 666554 46788888888777 4555443 477777777777764322222 346666666
Q ss_pred CCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCC
Q 045967 360 NNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELV 439 (929)
Q Consensus 360 ~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 439 (929)
+|.+. .+|..+. ++|+.|++++|+++. +|..-..+|+.|++++|+++ .+|..+. +
T Consensus 250 ~N~L~-------------------~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~~sL~~L~Ls~N~Lt-~LP~~lp--~ 304 (754)
T PRK15370 250 INRIT-------------------ELPERLP--SALQSLDLFHNKISC-LPENLPEELRYLSVYDNSIR-TLPAHLP--S 304 (754)
T ss_pred CCccC-------------------cCChhHh--CCCCEEECcCCccCc-cccccCCCCcEEECCCCccc-cCcccch--h
Confidence 66554 3344332 356666776666663 33333346666666666665 3443332 3
Q ss_pred CCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceecc
Q 045967 440 NLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDL 519 (929)
Q Consensus 440 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~L 519 (929)
+|+.|++++|+++... ..+ .++|+.|++++| .++.+|..+. ++|+.|++
T Consensus 305 sL~~L~Ls~N~Lt~LP--~~l--~~sL~~L~Ls~N-------------------------~Lt~LP~~l~--~sL~~L~L 353 (754)
T PRK15370 305 GITHLNVQSNSLTALP--ETL--PPGLKTLEAGEN-------------------------ALTSLPASLP--PELQVLDV 353 (754)
T ss_pred hHHHHHhcCCccccCC--ccc--cccceeccccCC-------------------------ccccCChhhc--CcccEEEC
Confidence 5666666666665431 111 134555555555 3334443332 45666666
Q ss_pred CCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCC
Q 045967 520 SESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLS 599 (929)
Q Consensus 520 s~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls 599 (929)
++|++. .+|..+ .++|+.|++++|.++.+++.....|+.|++++|+++. +| ..+|.....++.+..+++.
T Consensus 354 s~N~L~-~LP~~l----p~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~-LP----~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 354 SKNQIT-VLPETL----PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVR-LP----ESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred CCCCCC-cCChhh----cCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCccc-Cc----hhHHHHhhcCCCccEEEee
Confidence 666655 244433 1456666666666665544333456667777777652 22 2344444555677778888
Q ss_pred CCcCc
Q 045967 600 NNRLS 604 (929)
Q Consensus 600 ~N~l~ 604 (929)
+|+++
T Consensus 424 ~Npls 428 (754)
T PRK15370 424 YNPFS 428 (754)
T ss_pred CCCcc
Confidence 88776
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=2.3e-17 Score=197.47 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCCcccccccccccCC----CCCCCCCCC
Q 045967 169 KHCPHEQSSALIQFKQLFSFDGDSSFVCQHSYPKMIS----WKKDTNYCS 214 (929)
Q Consensus 169 ~~c~~~e~~aLl~~k~~l~~~~~~~~~~~~~~~~l~s----W~~~~~~C~ 214 (929)
....++|...+++..+.+..|. .+.+ |++++++|.
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~p~-----------~~~~~~~~~~~~~~fc~ 96 (754)
T PRK15370 58 ETASPEEIKSKFECLRMLAFPA-----------YADNIQYSRGGADQYCI 96 (754)
T ss_pred CCCCHHHHHHHHHHHHHhcCCc-----------hhhccccccCCCCcccc
Confidence 4456778889999999997654 3333 766666664
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=9.6e-17 Score=178.04 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=50.1
Q ss_pred cccccEeeccccccCcccchhhcc-----ccccceeeccCccCCC----CCCccccCcCCCCEeeCCCCcCCCC----Cc
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGK-----LHSLRLLNLTHNHFTG----KIPSSLGNLAKLESLDLSSNNLAGK----IP 809 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~-----L~~L~~L~Ls~N~l~~----~ip~~l~~L~~L~~LdLs~N~ls~~----ip 809 (929)
++.|+.|++++|.+++.....+.. .+.|++|++++|.+++ .+...+..+++|+.+++++|.++.. ..
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 456677777777766533333321 2567777777777652 2334455556777777777777644 33
Q ss_pred hhhccC-CCCCEEECccCcC
Q 045967 810 KQLASL-TSLSVLNISHNRL 828 (929)
Q Consensus 810 ~~l~~L-~~L~~L~Ls~N~l 828 (929)
..+... +.|+.+++.+|++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 300 ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhhcCCchhhcccCCCCC
Confidence 333334 5677777776653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=1.8e-16 Score=175.80 Aligned_cols=187 Identities=25% Similarity=0.264 Sum_probs=95.4
Q ss_pred cCCCCCCcEEECCCCCCCCC----CccccCCCCCCCEEeccCccCCC------CCccccCCCCCCCEEEccCCcCCCCCC
Q 045967 276 IGNLKLLGRLMLGYSQFVGP----VPASLGNLTQLTLLHLMHNNFSS------HIPSSLSNLVQLTCLDLSGNSFVGEIP 345 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n~l~~~----lp~~~~~l~~L~~L~Ls~n~l~~------~~p~~l~~L~~L~~L~Ls~N~l~~~~p 345 (929)
+..+.+|++|+++++.++.. ++..+...++|++|+++++.+.+ .++..+..+++|++|++++|.+.+..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 33445566666666665432 44445556666666666665542 123445556677777777766654333
Q ss_pred C-CCCC---CCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCC-CCCcEEEcccccCCCCCCC----C--CC
Q 045967 346 D-IVNL---TQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSL-PLLEYVRLSDNQLSGHIDE----F--PS 414 (929)
Q Consensus 346 ~-l~~L---~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~~~----~--~l 414 (929)
. +..+ ++|++|++++|.+++... ..+...+..+ ++|++|++++|.+++.... . .+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~--------------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 164 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGL--------------RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHH--------------HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC
Confidence 2 2222 336666666665542100 0112233344 5556666666655532111 0 33
Q ss_pred CCCcEEEecCCCCCCC----CccccccCCCCcEEeccCCCCcCccc---hhhhhccCcccEEEccCCCC
Q 045967 415 KSLQNIYLSNNRLQGS----IPSSIFELVNLIDLQLDSNNFSGIAE---PYMFAKLIKLKYLYISHNSL 476 (929)
Q Consensus 415 ~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~Ls~N~l 476 (929)
++|++|++++|.+++. ++..+..+++|++|++++|.+.+... ...+..+++|++|++++|.+
T Consensus 165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 4566666666665532 22233344566666666666653321 12344556666666666643
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=1e-14 Score=174.31 Aligned_cols=118 Identities=36% Similarity=0.615 Sum_probs=106.0
Q ss_pred cccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECc
Q 045967 745 VFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNIS 824 (929)
Q Consensus 745 ~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls 824 (929)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCccCCCCCCC--CCccccccccCCcCCCCCCCCCCCC
Q 045967 825 HNRLDGPIPQGPQ--FNTIQEDSYIGNLGLCGFSLTKKYG 862 (929)
Q Consensus 825 ~N~l~g~iP~~~~--~~~~~~~~~~gn~~Lcg~~l~~~c~ 862 (929)
+|+++|.+|.... +.......+.||+++||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997521 2233456789999999977555663
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=4.2e-16 Score=145.67 Aligned_cols=184 Identities=33% Similarity=0.589 Sum_probs=134.3
Q ss_pred hccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCC
Q 045967 588 CDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPEL 667 (929)
Q Consensus 588 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 667 (929)
.++...+.|.+|+|+++ .+|..+..+.++ +.|++.+|+++.. |.+++.+++|+.|+++-|++.. .|..|+.+|.|
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nl--evln~~nnqie~l-p~~issl~klr~lnvgmnrl~~-lprgfgs~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNL--EVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLNI-LPRGFGSFPAL 104 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhh--hhhhcccchhhhc-Chhhhhchhhhheecchhhhhc-CccccCCCchh
Confidence 34445566666677666 556666666553 3566666666643 5667778888888888888754 48888888888
Q ss_pred ceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhccccc
Q 045967 668 RVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFT 747 (929)
Q Consensus 668 ~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 747 (929)
++|||.+|++. .| .+|..+|. +..|+
T Consensus 105 evldltynnl~---------e~----~lpgnff~-----------------------------------------m~tlr 130 (264)
T KOG0617|consen 105 EVLDLTYNNLN---------EN----SLPGNFFY-----------------------------------------MTTLR 130 (264)
T ss_pred hhhhccccccc---------cc----cCCcchhH-----------------------------------------HHHHH
Confidence 88877777653 22 23323221 45677
Q ss_pred EeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCC---CCEEECc
Q 045967 748 TIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTS---LSVLNIS 824 (929)
Q Consensus 748 ~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~---L~~L~Ls 824 (929)
.|+|++|.|. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|++.+|+++ .+|..++++.- =+++.+.
T Consensus 131 alyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E 207 (264)
T KOG0617|consen 131 ALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRME 207 (264)
T ss_pred HHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhh
Confidence 7888888887 78889999999999999999998 88999999999999999999999 67777777642 2456677
Q ss_pred cCcCccCCC
Q 045967 825 HNRLDGPIP 833 (929)
Q Consensus 825 ~N~l~g~iP 833 (929)
+|+...+|.
T Consensus 208 ~NPwv~pIa 216 (264)
T KOG0617|consen 208 ENPWVNPIA 216 (264)
T ss_pred hCCCCChHH
Confidence 888766554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=1.1e-13 Score=165.39 Aligned_cols=155 Identities=28% Similarity=0.474 Sum_probs=123.5
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCCcccccccccccCCCCCCCCCC----CCcccccCCCCcccccCchhhhhcCCCCceE
Q 045967 169 KHCPHEQSSALIQFKQLFSFDGDSSFVCQHSYPKMISWKKDTNYC----SWDGLTCDMATVSLETPVFQALVQNMTKLQV 244 (929)
Q Consensus 169 ~~c~~~e~~aLl~~k~~l~~~~~~~~~~~~~~~~l~sW~~~~~~C----~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~ 244 (929)
..+.++|.+||+++|+++..+. ..+|. +..|| .|.||+|..... .....++.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~------------~~~W~-g~~C~p~~~~w~Gv~C~~~~~-----------~~~~~v~~ 422 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL------------RFGWN-GDPCVPQQHPWSGADCQFDST-----------KGKWFIDG 422 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc------------cCCCC-CCCCCCcccccccceeeccCC-----------CCceEEEE
Confidence 3456789999999999986432 13795 44443 799999963210 00125889
Q ss_pred EEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCcccc
Q 045967 245 LSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSL 324 (929)
Q Consensus 245 L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l 324 (929)
|+|+++.+.| .+|..++++++|++|+|++|.+.|.+|..++.+++|++|+|++|+++|.+|+.+
T Consensus 423 L~L~~n~L~g----------------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 423 LGLDNQGLRG----------------FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EECCCCCccc----------------cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence 9999998854 455667788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEccCCcCCCCCCC-CCC-CCCCCEEeCCCCcC
Q 045967 325 SNLVQLTCLDLSGNSFVGEIPD-IVN-LTQVSFFDLSNNQL 363 (929)
Q Consensus 325 ~~L~~L~~L~Ls~N~l~~~~p~-l~~-L~~L~~L~Ls~n~l 363 (929)
+++++|++|+|++|+++|.+|. ++. ..++..+++.+|..
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 9999999999999999999987 544 34566777777754
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.2e-15 Score=142.66 Aligned_cols=159 Identities=25% Similarity=0.388 Sum_probs=102.9
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCE
Q 045967 276 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSF 355 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~ 355 (929)
+.++.+.+.|.||+|+++. +|..+..+.+|++|++++|++. .+|.+++.+++|++|+++-|++...+-.++.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 3445666677777777764 5666777777777777777776 5677777777777777777776644444777777777
Q ss_pred EeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC-CCCCCcEEEecCCCCCCCCccc
Q 045967 356 FDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSS 434 (929)
Q Consensus 356 L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~ 434 (929)
||+++|++.. ..+|..|..++.|+.|+|++|.+.-..++. .+++|+.|.+..|.+- .+|..
T Consensus 107 ldltynnl~e-----------------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpke 168 (264)
T KOG0617|consen 107 LDLTYNNLNE-----------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKE 168 (264)
T ss_pred hhcccccccc-----------------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHH
Confidence 7777666642 144555566666666666666665333333 5566666666666655 56666
Q ss_pred cccCCCCcEEeccCCCCcCc
Q 045967 435 IFELVNLIDLQLDSNNFSGI 454 (929)
Q Consensus 435 l~~l~~L~~L~Ls~N~l~~~ 454 (929)
++.++.|++|.+.+|+++-.
T Consensus 169 ig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred HHHHHHHHHHhcccceeeec
Confidence 77777777777777776654
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=2e-11 Score=134.30 Aligned_cols=191 Identities=27% Similarity=0.470 Sum_probs=109.7
Q ss_pred cEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCC
Q 045967 562 GYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCT 641 (929)
Q Consensus 562 ~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~ 641 (929)
...|++.|++ .++|..++.+..|+.+.+..|.+. .+|.++.++..+ ..++++.|+++.. |..+..|+
T Consensus 78 ~~aDlsrNR~---------~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~l--t~l~ls~NqlS~l-p~~lC~lp 144 (722)
T KOG0532|consen 78 VFADLSRNRF---------SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEAL--TFLDLSSNQLSHL-PDGLCDLP 144 (722)
T ss_pred hhhhcccccc---------ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHH--HHhhhccchhhcC-ChhhhcCc
Confidence 4455666665 355556666666666666666655 555555555432 3455555555433 33333333
Q ss_pred CCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCc
Q 045967 642 KLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGE 721 (929)
Q Consensus 642 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~ 721 (929)
|+.|-+++|+++.. |..++.++.|..|+.+.|.+. .+|.++ .
T Consensus 145 -Lkvli~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~---------------slpsql-~-------------------- 186 (722)
T KOG0532|consen 145 -LKVLIVSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQ---------------SLPSQL-G-------------------- 186 (722)
T ss_pred -ceeEEEecCccccC-CcccccchhHHHhhhhhhhhh---------------hchHHh-h--------------------
Confidence 55555555555433 444554455554444444432 333322 1
Q ss_pred cccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCC
Q 045967 722 EYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSS 801 (929)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~ 801 (929)
.+.+|+.|++..|++. ..|+++..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+
T Consensus 187 --------------------~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 187 --------------------YLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred --------------------hHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeecc
Confidence 1455666666777766 456666644 4777888888888 7888888888888888888
Q ss_pred CcCCCCCchhh---ccCCCCCEEECccCc
Q 045967 802 NNLAGKIPKQL---ASLTSLSVLNISHNR 827 (929)
Q Consensus 802 N~ls~~ip~~l---~~L~~L~~L~Ls~N~ 827 (929)
|.|. ..|..+ +...-.++|+..-++
T Consensus 244 NPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 244 NPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CCCC-CChHHHHhccceeeeeeecchhcc
Confidence 8887 445443 223445667776664
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=1.7e-11 Score=134.98 Aligned_cols=162 Identities=28% Similarity=0.377 Sum_probs=113.5
Q ss_pred cccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCC
Q 045967 270 SELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVN 349 (929)
Q Consensus 270 g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~ 349 (929)
.++|...+.+..|+.+.|..|.+. .+|..++++..|++|||+.|+++ .+|..++.|+ |+.|-+++|+++...++++.
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~ 164 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGL 164 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccccCCccccc
Confidence 345556666666777777777665 36777777777777777777776 5566666554 67777777777765555666
Q ss_pred CCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCC
Q 045967 350 LTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG 429 (929)
Q Consensus 350 L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~ 429 (929)
+..|.+||.+.|++. .+|..++.+.+|+.|.+..|++....++...-.|..||++.|++.
T Consensus 165 ~~tl~~ld~s~nei~-------------------slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQ-------------------SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS- 224 (722)
T ss_pred chhHHHhhhhhhhhh-------------------hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-
Confidence 667777777777665 566777788888888888887775444444446777888888876
Q ss_pred CCccccccCCCCcEEeccCCCCcCc
Q 045967 430 SIPSSIFELVNLIDLQLDSNNFSGI 454 (929)
Q Consensus 430 ~~p~~l~~l~~L~~L~Ls~N~l~~~ 454 (929)
.+|-.|.+|+.|++|.|.+|.+...
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCCCC
Confidence 7788888888888888888877654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=7.3e-10 Score=126.79 Aligned_cols=174 Identities=33% Similarity=0.429 Sum_probs=108.6
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCC-CCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCC
Q 045967 276 IGNLKLLGRLMLGYSQFVGPVPASLGNLT-QLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVS 354 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~ 354 (929)
+..++.++.|++.+|.++. +|.....+. +|+.|++++|++. .+|..++.+++|+.|++++|++....+..+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 4445777888888888774 666666664 7888888888877 455667788888888888888775444455777888
Q ss_pred EEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCC-CCCCCCcEEEecCCCCCCCCcc
Q 045967 355 FFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE-FPSKSLQNIYLSNNRLQGSIPS 433 (929)
Q Consensus 355 ~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~ 433 (929)
.|++++|+++ .+|........|++|.+++|.+...+.. ..+.++..+.+.+|++. .++.
T Consensus 190 ~L~ls~N~i~-------------------~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 190 NLDLSGNKIS-------------------DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred heeccCCccc-------------------cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccc
Confidence 8888888776 3444444444466666666632222222 24555555555555554 2245
Q ss_pred ccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCC
Q 045967 434 SIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHN 474 (929)
Q Consensus 434 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 474 (929)
.+..+++++.|++++|.++... .++.+.+++.|++++|
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~---~~~~~~~l~~L~~s~n 287 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSIS---SLGSLTNLRELDLSGN 287 (394)
T ss_pred hhccccccceeccccccccccc---cccccCccCEEeccCc
Confidence 5556666666666666665552 2555666666666665
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=1.7e-09 Score=123.78 Aligned_cols=144 Identities=33% Similarity=0.388 Sum_probs=71.1
Q ss_pred EEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCC-CCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCC
Q 045967 308 LLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLT-QVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIP 386 (929)
Q Consensus 308 ~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~-~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p 386 (929)
.++++.|.+... ...+..++.++.|++.+|.++...+....+. +|+.|++++|++. .+|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-------------------~l~ 156 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-------------------SLP 156 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-------------------hhh
Confidence 345555544211 1223334555555555555554444344442 5555555555554 333
Q ss_pred ccccCCCCCcEEEcccccCCCCCCCC-CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCc
Q 045967 387 SWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIK 465 (929)
Q Consensus 387 ~~l~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 465 (929)
..+..+++|+.|++++|+++...+.. ..++|+.|++++|+++ .+|........|++|.+++|.+...+ ..+.++.+
T Consensus 157 ~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~--~~~~~~~~ 233 (394)
T COG4886 157 SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELL--SSLSNLKN 233 (394)
T ss_pred hhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecc--hhhhhccc
Confidence 44555555555555555555333333 4555555555555555 44444444445666666666422221 34455555
Q ss_pred ccEEEccCC
Q 045967 466 LKYLYISHN 474 (929)
Q Consensus 466 L~~L~Ls~N 474 (929)
+..+.+.+|
T Consensus 234 l~~l~l~~n 242 (394)
T COG4886 234 LSGLELSNN 242 (394)
T ss_pred ccccccCCc
Confidence 555555555
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.3e-10 Score=122.69 Aligned_cols=64 Identities=25% Similarity=0.229 Sum_probs=31.3
Q ss_pred CCCCCCcEEECCCCCCCCCCc--cccCCCCCCCEEeccCccCCCC--CccccCCCCCCCEEEccCCcCC
Q 045967 277 GNLKLLGRLMLGYSQFVGPVP--ASLGNLTQLTLLHLMHNNFSSH--IPSSLSNLVQLTCLDLSGNSFV 341 (929)
Q Consensus 277 ~~l~~L~~L~Ls~n~l~~~lp--~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~L~~L~~L~Ls~N~l~ 341 (929)
.++++|+...|.++.... .+ .....|++++.||||.|-+..- +-.....+++|+.|+|+.|++.
T Consensus 118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 445566666665554432 11 2334555666666666554422 1122344555555555555554
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.3e-10 Score=122.70 Aligned_cols=41 Identities=27% Similarity=0.156 Sum_probs=21.0
Q ss_pred CCCCCCcEEECCCCCCCCC--CccccCCCCCCCEEeccCccCC
Q 045967 277 GNLKLLGRLMLGYSQFVGP--VPASLGNLTQLTLLHLMHNNFS 317 (929)
Q Consensus 277 ~~l~~L~~L~Ls~n~l~~~--lp~~~~~l~~L~~L~Ls~n~l~ 317 (929)
..|++++.||||.|-+..- +-.....+++|+.|+|+.|++.
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 3455666666666544432 1122344556666666666554
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=2.6e-09 Score=105.47 Aligned_cols=128 Identities=26% Similarity=0.211 Sum_probs=40.2
Q ss_pred ccCCCCCcEEEcccccCCCCCCCC-CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCccc
Q 045967 389 LFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLK 467 (929)
Q Consensus 389 l~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 467 (929)
+.+..++++|+|.+|.|+..-... .+.+|+.|++++|.++.. +.+..+++|++|++++|+++.+.+ .....+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-TT--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCCcCC
Confidence 345556788888888877433222 467788888888888743 356777888888888888877632 2224678888
Q ss_pred EEEccCCCCCCCccccccCCCCCcceeeccccCCCCCCh----hhhcccccceecc
Q 045967 468 YLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPS----FLRTQDKLFYLDL 519 (929)
Q Consensus 468 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~----~l~~~~~L~~L~L 519 (929)
+|++++|+|...+.+.....+++|+.|++.+|.++..+. .+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 888888876544443333345555555555555443322 2344555555543
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=6e-10 Score=113.58 Aligned_cols=86 Identities=27% Similarity=0.380 Sum_probs=44.9
Q ss_pred ccCCCCCcEEEcccccCCCCCCCC-CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCccc
Q 045967 389 LFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLK 467 (929)
Q Consensus 389 l~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 467 (929)
+..+++|+.|||++|.++.....- .+.+.+.|.|+.|.+... ..+.++-+|..||+++|++.....-..+++++.|+
T Consensus 325 La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE 402 (490)
T ss_pred hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence 555566666666666555222111 455566666666655422 34455555566666666555443333455555555
Q ss_pred EEEccCCCC
Q 045967 468 YLYISHNSL 476 (929)
Q Consensus 468 ~L~Ls~N~l 476 (929)
.+.|.+|++
T Consensus 403 ~l~L~~NPl 411 (490)
T KOG1259|consen 403 TLRLTGNPL 411 (490)
T ss_pred HHhhcCCCc
Confidence 555555543
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.86 E-value=3.1e-10 Score=118.73 Aligned_cols=95 Identities=24% Similarity=0.274 Sum_probs=48.5
Q ss_pred hhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCC----Cccc-------c
Q 045967 232 FQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGP----VPAS-------L 300 (929)
Q Consensus 232 ~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~----lp~~-------~ 300 (929)
+-+.+-.+..+++|+|++|.+...- ...+.+.+.+.++|+..++|+- ++|. +|.. +
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EA------------a~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL 88 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEA------------ARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKAL 88 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHH------------HHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHH
Confidence 4566667777777777777663322 1234455666667777777642 2332 3322 2
Q ss_pred CCCCCCCEEeccCccCCCCCccc----cCCCCCCCEEEccCCc
Q 045967 301 GNLTQLTLLHLMHNNFSSHIPSS----LSNLVQLTCLDLSGNS 339 (929)
Q Consensus 301 ~~l~~L~~L~Ls~n~l~~~~p~~----l~~L~~L~~L~Ls~N~ 339 (929)
..+++|++||||.|-+.-..+.. +.++..|++|.|.+|.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 33445555555555544322222 2334444444444443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=9.4e-10 Score=112.18 Aligned_cols=127 Identities=23% Similarity=0.196 Sum_probs=74.5
Q ss_pred cEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCC
Q 045967 372 MLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNF 451 (929)
Q Consensus 372 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 451 (929)
+.+||++|.++ .+.++..-.|.++.|++++|.+...-....+.+|+.|||++|.++ .+..+-.++-+++.|.|++|.+
T Consensus 287 telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 287 TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred hhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH
Confidence 33333333333 444555556677777777777664333335666777777777665 4444555566667777777766
Q ss_pred cCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCC
Q 045967 452 SGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDG 526 (929)
Q Consensus 452 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~ 526 (929)
... ..+..+-+|..||+++|+|.....+ ..+++++.|+.+.|.+|.+.+
T Consensus 365 E~L---SGL~KLYSLvnLDl~~N~Ie~ldeV-----------------------~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 365 ETL---SGLRKLYSLVNLDLSSNQIEELDEV-----------------------NHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhh---hhhHhhhhheeccccccchhhHHHh-----------------------cccccccHHHHHhhcCCCccc
Confidence 554 4455666666666666654322221 245666777777777777664
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=1.7e-09 Score=106.64 Aligned_cols=125 Identities=32% Similarity=0.419 Sum_probs=30.2
Q ss_pred CCCCCCCEEEccCCcCCCCCCCCC-CCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccc
Q 045967 325 SNLVQLTCLDLSGNSFVGEIPDIV-NLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDN 403 (929)
Q Consensus 325 ~~L~~L~~L~Ls~N~l~~~~p~l~-~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 403 (929)
.+..++++|+|.+|.++. +..++ .+.+|+.|++++|.++. + +.+..++.|++|++++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~-Ie~L~~~l~~L~~L~Ls~N~I~~-------------------l-~~l~~L~~L~~L~L~~N 74 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-IENLGATLDKLEVLDLSNNQITK-------------------L-EGLPGLPRLKTLDLSNN 74 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----------------------TT----TT--EEE--SS
T ss_pred cccccccccccccccccc-ccchhhhhcCCCEEECCCCCCcc-------------------c-cCccChhhhhhcccCCC
Confidence 344456666666666653 33344 35556666666665541 1 12445556666666666
Q ss_pred cCCCCCCCC--CCCCCcEEEecCCCCCCCC-ccccccCCCCcEEeccCCCCcCccc--hhhhhccCcccEEE
Q 045967 404 QLSGHIDEF--PSKSLQNIYLSNNRLQGSI-PSSIFELVNLIDLQLDSNNFSGIAE--PYMFAKLIKLKYLY 470 (929)
Q Consensus 404 ~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~~~l~~L~~L~ 470 (929)
+|+...+.. .+++|++|++++|++...- -..+..+++|+.|+|.+|.+..... ...+..+|+|+.||
T Consensus 75 ~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 75 RISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp ---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 655322111 3455555555555554311 1233445555555555555443211 12234445555444
No 36
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.74 E-value=9.2e-09 Score=76.53 Aligned_cols=40 Identities=35% Similarity=0.822 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccccccccCCCCCC--CCCCCCcccccC
Q 045967 173 HEQSSALIQFKQLFSFDGDSSFVCQHSYPKMISWKKD--TNYCSWDGLTCD 221 (929)
Q Consensus 173 ~~e~~aLl~~k~~l~~~~~~~~~~~~~~~~l~sW~~~--~~~C~W~Gv~C~ 221 (929)
++|++||++||+++..++.+ .+.+|+.+ .+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~---------~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSG---------VLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-C---------CCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCc---------ccccCCCcCCCCCeeeccEEeC
Confidence 57999999999999864432 78999876 799999999996
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.72 E-value=1.3e-09 Score=114.14 Aligned_cols=93 Identities=28% Similarity=0.369 Sum_probs=51.7
Q ss_pred ccCCCCCCCEEeccCccCCCC----CccccCCCCCCCEEEccCCcCCCC----CCC--------CCCCCCCCEEeCCCCc
Q 045967 299 SLGNLTQLTLLHLMHNNFSSH----IPSSLSNLVQLTCLDLSGNSFVGE----IPD--------IVNLTQVSFFDLSNNQ 362 (929)
Q Consensus 299 ~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~~----~p~--------l~~L~~L~~L~Ls~n~ 362 (929)
.+....+++.|+||+|.+... +...+.+.++|+.-++++- ++|. +|. +...++|++|+||.|.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 345567788888888877543 3344556667777777653 3332 222 3345566666666666
Q ss_pred CCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCC
Q 045967 363 LAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLS 406 (929)
Q Consensus 363 l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 406 (929)
+.-..+. .+-.-+.++..|++|+|.+|.+.
T Consensus 104 ~G~~g~~--------------~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 104 FGPKGIR--------------GLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cCccchH--------------HHHHHHHhccCHHHHhhhcCCCC
Confidence 5422111 11123445666777777776654
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=2.8e-09 Score=122.36 Aligned_cols=82 Identities=30% Similarity=0.355 Sum_probs=35.3
Q ss_pred CCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeC
Q 045967 279 LKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDL 358 (929)
Q Consensus 279 l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~L 358 (929)
+..++.+++..|.+.. +-..+..+++|+.|++.+|++... ...+..+++|++|++++|.++. +..+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~-i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK-LEGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccc-ccchhhccchhhhee
Confidence 3444444455554432 122244445555555555555422 1114444555555555554442 222333333444444
Q ss_pred CCCcC
Q 045967 359 SNNQL 363 (929)
Q Consensus 359 s~n~l 363 (929)
++|.+
T Consensus 148 ~~N~i 152 (414)
T KOG0531|consen 148 SGNLI 152 (414)
T ss_pred ccCcc
Confidence 44443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=3.1e-09 Score=121.92 Aligned_cols=191 Identities=30% Similarity=0.348 Sum_probs=109.4
Q ss_pred cccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCC
Q 045967 274 NSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQV 353 (929)
Q Consensus 274 ~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L 353 (929)
..++.+++|.+|++.+|.+.. +...+..+++|++|++++|.|+... .+..++.|+.|++++|.+. .+..+..+++|
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L 164 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISGLESLKSL 164 (414)
T ss_pred cccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hccCCccchhh
Confidence 346778888899999988876 3333677888999999999888653 4677777889999999887 45556678888
Q ss_pred CEEeCCCCcCCCCCC---CC---CcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCC--CcEEEecCC
Q 045967 354 SFFDLSNNQLAGPVP---SH---EMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKS--LQNIYLSNN 425 (929)
Q Consensus 354 ~~L~Ls~n~l~~~~p---~~---L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~--L~~L~Ls~N 425 (929)
+.+++++|.++..-+ .. ++.+++.+|.+... ..+..+..+..+++..|.++..-+...... |+.+++++|
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGN 242 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccC
Confidence 888888888774332 11 33344444443311 122223333333444444442222222222 555555555
Q ss_pred CCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCC
Q 045967 426 RLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHN 474 (929)
Q Consensus 426 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 474 (929)
.+. ..+..+..+.++..|++.+|++... ..+.....+..+....|
T Consensus 243 ~i~-~~~~~~~~~~~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 243 RIS-RSPEGLENLKNLPVLDLSSNRISNL---EGLERLPKLSELWLNDN 287 (414)
T ss_pred ccc-cccccccccccccccchhhcccccc---ccccccchHHHhccCcc
Confidence 554 2223344455555555555555443 22334444444444444
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=1.4e-08 Score=82.31 Aligned_cols=60 Identities=42% Similarity=0.634 Sum_probs=32.2
Q ss_pred ccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcC
Q 045967 769 SLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRL 828 (929)
Q Consensus 769 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l 828 (929)
+|++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 445555555555544444555555555555555555544445555555555555555543
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=4.3e-08 Score=120.20 Aligned_cols=248 Identities=22% Similarity=0.239 Sum_probs=122.1
Q ss_pred CCcEEECCCCC--CCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeC
Q 045967 281 LLGRLMLGYSQ--FVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDL 358 (929)
Q Consensus 281 ~L~~L~Ls~n~--l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~L 358 (929)
.|++|-+..|. +....++.|..++.|++|||++|.--+.+|+.++.|.+||+|++++..+...+..+.+++.|.+|++
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence 56666666664 3322334466677777777777665566777777777777777777776644444677777777766
Q ss_pred CCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCC----CCCCCCcEEEecCCCCCCCCccc
Q 045967 359 SNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE----FPSKSLQNIYLSNNRLQGSIPSS 434 (929)
Q Consensus 359 s~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~~~p~~ 434 (929)
..+.... .+|.....+++|++|.+........... ..+.+|+.+....... .+-..
T Consensus 626 ~~~~~l~------------------~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~ 685 (889)
T KOG4658|consen 626 EVTGRLE------------------SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLED 685 (889)
T ss_pred ccccccc------------------cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhh
Confidence 6554321 2233344466666666654432111100 0334444444432222 01111
Q ss_pred cccCCCCc----EEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCcc--ccccC--C-CCCcceeeccccCCCCCC
Q 045967 435 IFELVNLI----DLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTT--FKIDI--P-FPKFSYLSLFACNISAFP 505 (929)
Q Consensus 435 l~~l~~L~----~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~--~-~~~L~~L~L~~n~l~~lp 505 (929)
+..+..|. .+.+.++...... ..+..+.+|+.|.+.++.+..... ..... . ++++..+.+..|..-..+
T Consensus 686 l~~~~~L~~~~~~l~~~~~~~~~~~--~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 686 LLGMTRLRSLLQSLSIEGCSKRTLI--SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred hhhhHHHHHHhHhhhhcccccceee--cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence 22222222 2222222222221 345666677777776664321000 00000 1 334555555555555555
Q ss_pred hhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccc
Q 045967 506 SFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITK 552 (929)
Q Consensus 506 ~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~ 552 (929)
.+....++|+.|.+..+.....+.... ..+..++.+.+..+.+.+
T Consensus 764 ~~~~f~~~L~~l~l~~~~~~e~~i~~~--k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 764 TWLLFAPHLTSLSLVSCRLLEDIIPKL--KALLELKELILPFNKLEG 808 (889)
T ss_pred chhhccCcccEEEEecccccccCCCHH--HHhhhcccEEeccccccc
Confidence 556666777777777766554444333 233334444444444433
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=2.6e-08 Score=80.79 Aligned_cols=61 Identities=33% Similarity=0.495 Sum_probs=56.5
Q ss_pred ccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcC
Q 045967 744 TVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNL 804 (929)
Q Consensus 744 ~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~l 804 (929)
++|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977778999999999999999999988888999999999999999986
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=4.6e-08 Score=119.96 Aligned_cols=87 Identities=32% Similarity=0.421 Sum_probs=55.3
Q ss_pred hcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCcc
Q 045967 236 VQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNN 315 (929)
Q Consensus 236 l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~ 315 (929)
+..++.|++|||++|.= .+++|..+++|-+||+|+|++..+. .+|..+++|..|.+||+..+.
T Consensus 567 f~~m~~LrVLDLs~~~~----------------l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSS----------------LSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred HhhCcceEEEECCCCCc----------------cCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccc
Confidence 55566777777766431 2455666666677777777776665 466677777777777776665
Q ss_pred CCCCCccccCCCCCCCEEEccCCc
Q 045967 316 FSSHIPSSLSNLVQLTCLDLSGNS 339 (929)
Q Consensus 316 l~~~~p~~l~~L~~L~~L~Ls~N~ 339 (929)
....+|..+..|++|++|.+....
T Consensus 630 ~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 630 RLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccchhhhcccccEEEeeccc
Confidence 544455555566777777665554
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=9.1e-08 Score=108.54 Aligned_cols=171 Identities=27% Similarity=0.298 Sum_probs=104.2
Q ss_pred cccccCCCCCcEEEccCCcCCCCCcccccCC-CCCceeeccccccc--------------c-----ccceeeCCCCcCcc
Q 045967 634 PQSLVNCTKLEVLDIGNNKINDVFPYWLGNL-PELRVLVLRSNKLR--------------G-----SLRILDLSINNFSG 693 (929)
Q Consensus 634 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~--------------~-----~L~~LdLs~N~l~g 693 (929)
|-.+..+.+|++|.+.++.+... ..+..+ ..|++|. -+|.+. . .|...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 44556678888888888877542 111111 1233332 122211 0 1666777777775
Q ss_pred cCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhcccccccee
Q 045967 694 YLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLL 773 (929)
Q Consensus 694 ~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L 773 (929)
.+ .+.+.-++.++.|++++|++...+ ..+.++.|+.|||++|.+.-..--...+++ |+.|
T Consensus 178 ~m-D~SLqll~ale~LnLshNk~~~v~------------------~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 178 LM-DESLQLLPALESLNLSHNKFTKVD------------------NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hH-HHHHHHHHHhhhhccchhhhhhhH------------------HHHhcccccccccccchhccccccchhhhh-heee
Confidence 22 234556777788888888765443 223377788888888888733222223444 8888
Q ss_pred eccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCc-hhhccCCCCCEEECccCcCcc
Q 045967 774 NLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIP-KQLASLTSLSVLNISHNRLDG 830 (929)
Q Consensus 774 ~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip-~~l~~L~~L~~L~Ls~N~l~g 830 (929)
+|++|.++.. ..+.+|.+|+.||+++|-|++.-. .-+..|.+|+.|+|.+|++.+
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8888887733 346788888888888888775321 224556678888888888743
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5e-08 Score=99.93 Aligned_cols=156 Identities=22% Similarity=0.127 Sum_probs=75.2
Q ss_pred CCcEEECCCCCCCCC-CccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCC
Q 045967 281 LLGRLMLGYSQFVGP-VPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLS 359 (929)
Q Consensus 281 ~L~~L~Ls~n~l~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls 359 (929)
.|++||||...++.. +-.-+..|.+|+.|.|.++++.+.+-..+.+-.+|+.|+++.+.--....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-------------- 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-------------- 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH--------------
Confidence 356666666555432 22334455666666666666665555555555566666655543111000
Q ss_pred CCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC----CCCCCcEEEecCCCCC---CCCc
Q 045967 360 NNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF----PSKSLQNIYLSNNRLQ---GSIP 432 (929)
Q Consensus 360 ~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~----~l~~L~~L~Ls~N~l~---~~~p 432 (929)
..--+.+++.|..|+|++|.+....-.. --++|+.|+|+++.-. ..+.
T Consensus 252 -------------------------~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 252 -------------------------LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred -------------------------HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 0012334555555555555444322111 2245555555554211 0111
Q ss_pred cccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCC
Q 045967 433 SSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNS 475 (929)
Q Consensus 433 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 475 (929)
.-...+++|.+|||++|.--...-...|.+++.|++|.++.|.
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 1223566777777776642221112456667777777777764
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.14 E-value=4.4e-08 Score=111.03 Aligned_cols=127 Identities=28% Similarity=0.267 Sum_probs=88.9
Q ss_pred CCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCC
Q 045967 329 QLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGH 408 (929)
Q Consensus 329 ~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 408 (929)
.|.+-+.++|.++-.-..+.-++.|++|+|++|+++ .. ..+..+++|++|||++|.+. .
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~------------------~v--~~Lr~l~~LkhLDlsyN~L~-~ 223 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT------------------KV--DNLRRLPKLKHLDLSYNCLR-H 223 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh------------------hh--HHHHhcccccccccccchhc-c
Confidence 344555555555533333444555555555555554 22 36778999999999999988 4
Q ss_pred CCCC--CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCC
Q 045967 409 IDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSL 478 (929)
Q Consensus 409 ~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 478 (929)
+|.. .-..|+.|++++|.++.. ..+.++++|+.||+++|-+.+......+..+..|+.|+|.+|++-.
T Consensus 224 vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 224 VPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ccccchhhhhheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 4444 123499999999988743 4678899999999999988876554567888899999999997643
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=7.6e-07 Score=91.47 Aligned_cols=214 Identities=26% Similarity=0.326 Sum_probs=113.9
Q ss_pred cCCCCCCcEEECCCCCCCCC-Ccccc-CCCCCCCEEeccCccCCC--CCccccCCCCCCCEEEccCCcCCCCCCCC-CCC
Q 045967 276 IGNLKLLGRLMLGYSQFVGP-VPASL-GNLTQLTLLHLMHNNFSS--HIPSSLSNLVQLTCLDLSGNSFVGEIPDI-VNL 350 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n~l~~~-lp~~~-~~l~~L~~L~Ls~n~l~~--~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l-~~L 350 (929)
+..+.-++.|.+.++.+... .-..| ..++.++.|||.+|.++. .+...+.+|+.|++|+++.|.+...|..+ ..+
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 33344455556666555432 11223 246788888998888874 23344568888899999988888766655 466
Q ss_pred CCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCC
Q 045967 351 TQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGS 430 (929)
Q Consensus 351 ~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 430 (929)
.+|+.|-|.+..+.-. .....+..+|.+++|.++.|.+. .+++..|.++..
T Consensus 121 ~nl~~lVLNgT~L~w~-----------------~~~s~l~~lP~vtelHmS~N~~r------------q~n~Dd~c~e~~ 171 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWT-----------------QSTSSLDDLPKVTELHMSDNSLR------------QLNLDDNCIEDW 171 (418)
T ss_pred cceEEEEEcCCCCChh-----------------hhhhhhhcchhhhhhhhccchhh------------hhcccccccccc
Confidence 7888888777665311 22245667888888888888543 222333322211
Q ss_pred Ccc--ccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCC--h
Q 045967 431 IPS--SIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFP--S 506 (929)
Q Consensus 431 ~p~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp--~ 506 (929)
-|+ .+...+.+..+.++-|++. ..++++..+-+..|+++....-....++|.+..|+|..+++.... +
T Consensus 172 s~~v~tlh~~~c~~~~w~~~~~l~--------r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD 243 (418)
T KOG2982|consen 172 STEVLTLHQLPCLEQLWLNKNKLS--------RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVD 243 (418)
T ss_pred chhhhhhhcCCcHHHHHHHHHhHH--------hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHH
Confidence 000 0111111222222222221 123445555555554433222222224555555566655555322 3
Q ss_pred hhhcccccceeccCCCcCCC
Q 045967 507 FLRTQDKLFYLDLSESKIDG 526 (929)
Q Consensus 507 ~l~~~~~L~~L~Ls~N~l~~ 526 (929)
.+..++.|..|.++++.+.+
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHcCCchhheeeccCCcccc
Confidence 45666777777777776653
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=3.8e-07 Score=83.35 Aligned_cols=104 Identities=27% Similarity=0.370 Sum_probs=64.3
Q ss_pred ccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEEC
Q 045967 744 TVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNI 823 (929)
Q Consensus 744 ~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~L 823 (929)
..|+..+|++|.+....+..-...+.++.|||++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..|.+|-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 34566677777776433332234456777777777777 56666777777777777777777 45666666777777777
Q ss_pred ccCcCccCCCCCCCCCccccccccCCc
Q 045967 824 SHNRLDGPIPQGPQFNTIQEDSYIGNL 850 (929)
Q Consensus 824 s~N~l~g~iP~~~~~~~~~~~~~~gn~ 850 (929)
.+|.+. +||......+.+...-.||.
T Consensus 131 ~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 131 PENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred CCCccc-cCcHHHhccccHHHHHhcCC
Confidence 777663 56655333333333333443
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.8e-07 Score=94.63 Aligned_cols=153 Identities=22% Similarity=0.237 Sum_probs=93.7
Q ss_pred CCcEEEcccccCCCCCCC---CCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCC-CcCccchhhhhccCcccEE
Q 045967 394 LLEYVRLSDNQLSGHIDE---FPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNN-FSGIAEPYMFAKLIKLKYL 469 (929)
Q Consensus 394 ~L~~L~Ls~N~l~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L 469 (929)
.|++|||+...|+..--. ..+.+|+.|.+.++++.+.+...+++-.+|+.|+|+.+. ++.....-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477778777766532111 156778888888888887777778888888888888764 3322222356778888888
Q ss_pred EccCCCCCCCccccccC--CCCCcceeeccccCCC----CCChhhhcccccceeccCCCcC-CCCCchhhhccCCCCccE
Q 045967 470 YISHNSLSLGTTFKIDI--PFPKFSYLSLFACNIS----AFPSFLRTQDKLFYLDLSESKI-DGQIPRWISKIGKDSLSY 542 (929)
Q Consensus 470 ~Ls~N~l~~~~~~~~~~--~~~~L~~L~L~~n~l~----~lp~~l~~~~~L~~L~Ls~N~l-~~~~p~~l~~~~~~~L~~ 542 (929)
+++++.+.... +.... --++|+.|+++++.-. .+......+++|.+|||++|.. +......| ..++.|++
T Consensus 266 NlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~--~kf~~L~~ 342 (419)
T KOG2120|consen 266 NLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--FKFNYLQH 342 (419)
T ss_pred CchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH--Hhcchhee
Confidence 88888432111 11111 3467778888877422 3333456788888888887753 32222223 34556666
Q ss_pred Eeccccc
Q 045967 543 LNLSHNF 549 (929)
Q Consensus 543 L~Ls~N~ 549 (929)
|.++.|.
T Consensus 343 lSlsRCY 349 (419)
T KOG2120|consen 343 LSLSRCY 349 (419)
T ss_pred eehhhhc
Confidence 6666553
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.91 E-value=2.5e-06 Score=86.68 Aligned_cols=93 Identities=25% Similarity=0.328 Sum_probs=54.1
Q ss_pred hhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCC----Cc-------cccCCC
Q 045967 235 LVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGP----VP-------ASLGNL 303 (929)
Q Consensus 235 ~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~----lp-------~~~~~l 303 (929)
.+.-+..++.++||+|.|...... .+...+.+-++|+..+++.-. +|. ++ ..+-+|
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e------------~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkc 91 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAME------------ELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKC 91 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHH------------HHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcC
Confidence 344477788888888877544322 334446667777777776532 222 22 234456
Q ss_pred CCCCEEeccCccCCCCCccc----cCCCCCCCEEEccCCcC
Q 045967 304 TQLTLLHLMHNNFSSHIPSS----LSNLVQLTCLDLSGNSF 340 (929)
Q Consensus 304 ~~L~~L~Ls~n~l~~~~p~~----l~~L~~L~~L~Ls~N~l 340 (929)
++|+..+||.|.+....|.. +++-+.|++|.+++|.+
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 67777777776665544432 34455666666666654
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=1.2e-06 Score=80.24 Aligned_cols=137 Identities=20% Similarity=0.334 Sum_probs=95.0
Q ss_pred cceeeCCCCcCcccCCHHH--HhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCc
Q 045967 681 LRILDLSINNFSGYLPARF--FEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDG 758 (929)
Q Consensus 681 L~~LdLs~N~l~g~ip~~~--~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 758 (929)
+..+||+++.+. .++... ......|+..++++|.++.++..+ ...++.++.|+|++|.++
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kf----------------t~kf~t~t~lNl~~neis- 90 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKF----------------TIKFPTATTLNLANNEIS- 90 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHH----------------hhccchhhhhhcchhhhh-
Confidence 445666666653 455432 233445556678888776655322 122567888999999988
Q ss_pred ccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCCCCC
Q 045967 759 EISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQGPQ 837 (929)
Q Consensus 759 ~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~~ 837 (929)
.+|.++..++.|+.||++.|.+. ..|+.+..|.+|-.||..+|.+. .||..+---+.....++.++++.+..|.+.|
T Consensus 91 dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 91 DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 77888999999999999999998 67777777888999999988887 5555533333344455678888888877654
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.87 E-value=1.9e-06 Score=87.47 Aligned_cols=226 Identities=18% Similarity=0.152 Sum_probs=128.6
Q ss_pred hhhhhcCCCCceEEEcCCCCCCCCCCccc-ccccccccccccccccCCCCCCcEEECCCCCCCCCCccc----cCCCCCC
Q 045967 232 FQALVQNMTKLQVLSLASLEMSTVVPDSL-KNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPAS----LGNLTQL 306 (929)
Q Consensus 232 ~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l-~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~----~~~l~~L 306 (929)
+...+.+-++|+..+++.-. +|..-+.+ .++ .-+.+.+.+|++|+..+||.|.|....|.. ++.-+.|
T Consensus 50 l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L------~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l 122 (388)
T COG5238 50 LCNVIANVRNLRVVNFSDAF-TGRDKDELYSNL------VMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDL 122 (388)
T ss_pred HHHHHhhhcceeEeehhhhh-hcccHHHHHHHH------HHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCc
Confidence 56667778888888887652 23221111 111 223467889999999999999998776654 5667899
Q ss_pred CEEeccCccCCCCCccc-------------cCCCCCCCEEEccCCcCCCCCCC-----CCCCCCCCEEeCCCCcCCCCCC
Q 045967 307 TLLHLMHNNFSSHIPSS-------------LSNLVQLTCLDLSGNSFVGEIPD-----IVNLTQVSFFDLSNNQLAGPVP 368 (929)
Q Consensus 307 ~~L~Ls~n~l~~~~p~~-------------l~~L~~L~~L~Ls~N~l~~~~p~-----l~~L~~L~~L~Ls~n~l~~~~p 368 (929)
++|.|++|.+.-.--.- ..+-+.|++.....|++..-... +..-.+|+.+.+.+|.|.-..-
T Consensus 123 ~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv 202 (388)
T COG5238 123 VHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV 202 (388)
T ss_pred eeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh
Confidence 99999999775321111 23447788888888887643222 2333578888888887652100
Q ss_pred CCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC------CCCCCcEEEecCCCCCCCCccccc------
Q 045967 369 SHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF------PSKSLQNIYLSNNRLQGSIPSSIF------ 436 (929)
Q Consensus 369 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~------~l~~L~~L~Ls~N~l~~~~p~~l~------ 436 (929)
.. .+...+..+++|+.|||..|-++-.-... ..+.|+.|.+..|-++.....++.
T Consensus 203 ~~-------------L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~ 269 (388)
T COG5238 203 TM-------------LAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK 269 (388)
T ss_pred HH-------------HHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhh
Confidence 00 01112334556666666666555221110 233466666666655543332221
Q ss_pred cCCCCcEEeccCCCCcCccc------hhhhhccCcccEEEccCCCCC
Q 045967 437 ELVNLIDLQLDSNNFSGIAE------PYMFAKLIKLKYLYISHNSLS 477 (929)
Q Consensus 437 ~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~L~Ls~N~l~ 477 (929)
..++|..|-..+|...+.+. ...-.+++-|..|.+.+|.+.
T Consensus 270 ~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 270 FVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 14556666666665443221 011234556666666666443
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=8.1e-06 Score=84.08 Aligned_cols=83 Identities=25% Similarity=0.212 Sum_probs=42.7
Q ss_pred CCCCcEEEcccccCCCCCCCC----CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCccc
Q 045967 392 LPLLEYVRLSDNQLSGHIDEF----PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLK 467 (929)
Q Consensus 392 l~~L~~L~Ls~N~l~~~~~~~----~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 467 (929)
++.++.+||.+|.|+.--... +++.|+.|+|+.|.+...|...-..+.+|+.|-|.+..+.-......+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 445556666666555311111 4556666666666555333222134456666666655543222224455666666
Q ss_pred EEEccCC
Q 045967 468 YLYISHN 474 (929)
Q Consensus 468 ~L~Ls~N 474 (929)
+|.++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 7766666
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00023 Score=79.06 Aligned_cols=31 Identities=26% Similarity=0.142 Sum_probs=15.1
Q ss_pred CCcEEEcccccCCCCCCCCCCCCCcEEEecCC
Q 045967 394 LLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNN 425 (929)
Q Consensus 394 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N 425 (929)
+|++|++++|.... .|..-..+|+.|+++.+
T Consensus 157 SLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNII-LPEKLPESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCccc-CcccccccCcEEEeccc
Confidence 56666666555331 22222245666665554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=7.3e-05 Score=73.38 Aligned_cols=105 Identities=24% Similarity=0.274 Sum_probs=64.0
Q ss_pred CCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCccee
Q 045967 415 KSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYL 494 (929)
Q Consensus 415 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L 494 (929)
.+...+||++|.+... ..|..++.|..|.++.|+|+.+.| ..-.-+++|+.|.|.+|.|.-.|++.....+|+|++|
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4556667777766422 345666777777777777776654 4444556677777777766655655555566666666
Q ss_pred eccccCCCCCCh----hhhcccccceeccCCC
Q 045967 495 SLFACNISAFPS----FLRTQDKLFYLDLSES 522 (929)
Q Consensus 495 ~L~~n~l~~lp~----~l~~~~~L~~L~Ls~N 522 (929)
.+-+|..+.-+. .+..+++|+.||...-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 666666553332 3455566666665543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.57 E-value=4.6e-05 Score=56.80 Aligned_cols=35 Identities=43% Similarity=0.733 Sum_probs=14.8
Q ss_pred cceeeccCccCCCCCCccccCcCCCCEeeCCCCcCC
Q 045967 770 LRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLA 805 (929)
Q Consensus 770 L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls 805 (929)
|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444444
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.45 E-value=9.8e-05 Score=55.02 Aligned_cols=37 Identities=41% Similarity=0.714 Sum_probs=32.2
Q ss_pred CCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCc
Q 045967 792 AKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLD 829 (929)
Q Consensus 792 ~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~ 829 (929)
++|++|++++|+|+ .+|..+.+|++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 56778999999999999999997
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.45 E-value=0.0005 Score=76.42 Aligned_cols=138 Identities=19% Similarity=0.298 Sum_probs=78.2
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCC-cCCCCCCCCCCCCCCC
Q 045967 276 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGN-SFVGEIPDIVNLTQVS 354 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N-~l~~~~p~l~~L~~L~ 354 (929)
+..+.++++|++++|.++. +|. +. .+|++|++++|.--..+|+.+. .+|++|++++| .+. .+| .+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~-LP--~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP-----~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV-LP--NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP-----ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC-CC--CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc-----cccc
Confidence 4556889999999987764 562 22 4688898887544345565442 46777777776 332 222 2345
Q ss_pred EEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEccccc-CC-CCCCCCCCCCCcEEEecCCCCCCCCc
Q 045967 355 FFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQ-LS-GHIDEFPSKSLQNIYLSNNRLQGSIP 432 (929)
Q Consensus 355 ~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~-~~~~~~~l~~L~~L~Ls~N~l~~~~p 432 (929)
.|++..+.... + +.+|. +|+.|.+.+++ .. ..++..-.++|++|++++|... ..|
T Consensus 116 ~L~L~~n~~~~---------------L-~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP 172 (426)
T PRK15386 116 SLEIKGSATDS---------------I-KNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILP 172 (426)
T ss_pred eEEeCCCCCcc---------------c-ccCcc------hHhheeccccccccccccccccCCcccEEEecCCCcc-cCc
Confidence 55554433220 0 12333 45566664332 11 1112123468999999888765 344
Q ss_pred cccccCCCCcEEeccCCC
Q 045967 433 SSIFELVNLIDLQLDSNN 450 (929)
Q Consensus 433 ~~l~~l~~L~~L~Ls~N~ 450 (929)
..+. .+|+.|+++.+.
T Consensus 173 ~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 173 EKLP--ESLQSITLHIEQ 188 (426)
T ss_pred cccc--ccCcEEEecccc
Confidence 4333 478888887663
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=3.5e-05 Score=92.61 Aligned_cols=108 Identities=24% Similarity=0.361 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCC-CCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCC-CccccCCCCCCCEEeccCccCC
Q 045967 240 TKLQVLSLASLEM-STVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGP-VPASLGNLTQLTLLHLMHNNFS 317 (929)
Q Consensus 240 ~~L~~L~Ls~~~l-~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~-lp~~~~~l~~L~~L~Ls~n~l~ 317 (929)
.+|++||++|... ...+|..++.+ ||+|+.|.+++-.+... +-....++++|..||+|+++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~---------------LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTM---------------LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhh---------------CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence 3678888877642 22233333222 78888888887666432 3344567788888888888877
Q ss_pred CCCccccCCCCCCCEEEccCCcCCC--CCCCCCCCCCCCEEeCCCCcCC
Q 045967 318 SHIPSSLSNLVQLTCLDLSGNSFVG--EIPDIVNLTQVSFFDLSNNQLA 364 (929)
Q Consensus 318 ~~~p~~l~~L~~L~~L~Ls~N~l~~--~~p~l~~L~~L~~L~Ls~n~l~ 364 (929)
.. ..+++|++|++|.+.+=.+.. .+-++.+|++|++||+|.....
T Consensus 187 nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 187 NL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred Cc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 44 567788888888777766553 2223677777777777766543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.00081 Score=66.22 Aligned_cols=106 Identities=23% Similarity=0.269 Sum_probs=52.8
Q ss_pred CCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccC
Q 045967 394 LLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISH 473 (929)
Q Consensus 394 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 473 (929)
+...+||++|.+........++.|.+|.|.+|+|+..-|.--.-+++|+.|.|.+|++.....-..+..+++|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 34455555555543222224555556666666655433333333455666666666655443323455666666666666
Q ss_pred CCCCCCcccccc--CCCCCcceeecccc
Q 045967 474 NSLSLGTTFKID--IPFPKFSYLSLFAC 499 (929)
Q Consensus 474 N~l~~~~~~~~~--~~~~~L~~L~L~~n 499 (929)
|++.-....... +.+|+|+.|+.++-
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhh
Confidence 643322221111 14566666666544
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.00035 Score=71.71 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=64.1
Q ss_pred cccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCc--cCCCCCccccCCCCCCCEEEccCCcCCC--CCCCC
Q 045967 272 LANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHN--NFSSHIPSSLSNLVQLTCLDLSGNSFVG--EIPDI 347 (929)
Q Consensus 272 ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~L~~L~~L~Ls~N~l~~--~~p~l 347 (929)
+......+..|+.|++.+..++.. ..|..|++|+.|.+|.| ++.+.++-....+++|++|++++|++.. .++.+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 333344455666666666665532 34667889999999999 6666666666677999999999998863 33347
Q ss_pred CCCCCCCEEeCCCCcCC
Q 045967 348 VNLTQVSFFDLSNNQLA 364 (929)
Q Consensus 348 ~~L~~L~~L~Ls~n~l~ 364 (929)
..+.+|..|++.+|..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 77888888888888765
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.69 E-value=0.0014 Score=79.04 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=30.1
Q ss_pred CCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCC-CCchhhhccCCCCccEEecccccc
Q 045967 487 PFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDG-QIPRWISKIGKDSLSYLNLSHNFI 550 (929)
Q Consensus 487 ~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~-~~p~~l~~~~~~~L~~L~Ls~N~l 550 (929)
.+|+|..|++++++++.+ ..++.+++|+.|.+.+=.+.. ..-..+ ..+++|+.||+|....
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L--F~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL--FNLKKLRVLDISRDKN 232 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH--hcccCCCeeecccccc
Confidence 344444444444444444 445666666666665554442 111111 3456666666665433
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.49 E-value=0.00022 Score=77.27 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=7.8
Q ss_pred cCCCCCcEEEccccc
Q 045967 390 FSLPLLEYVRLSDNQ 404 (929)
Q Consensus 390 ~~l~~L~~L~Ls~N~ 404 (929)
.+++++++|.+.++.
T Consensus 161 ~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCK 175 (483)
T ss_pred hhCCchhhhhhhcce
Confidence 345555555555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.27 E-value=0.0029 Score=65.14 Aligned_cols=83 Identities=22% Similarity=0.203 Sum_probs=38.6
Q ss_pred CCCCcEEEcccccCCCCCCCCCCCCCcEEEecCC--CCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEE
Q 045967 392 LPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNN--RLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYL 469 (929)
Q Consensus 392 l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 469 (929)
+..|+.|++.+..++.....-.+++|++|.++.| ++.+.++.-...+++|++|++++|++..+.....+..+.+|..|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 3444444444444442222224455555555555 44433333334445555555555555432211234444555555
Q ss_pred EccCC
Q 045967 470 YISHN 474 (929)
Q Consensus 470 ~Ls~N 474 (929)
++.+|
T Consensus 122 dl~n~ 126 (260)
T KOG2739|consen 122 DLFNC 126 (260)
T ss_pred hcccC
Confidence 55555
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.25 E-value=0.00024 Score=77.00 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=23.3
Q ss_pred cCCCCCcEEEccCCcCC-CCCcccccCCCCCceeeccccc
Q 045967 638 VNCTKLEVLDIGNNKIN-DVFPYWLGNLPELRVLVLRSNK 676 (929)
Q Consensus 638 ~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~ 676 (929)
.....|+.+.|+++... +..-+.+..+++|+.+++-+++
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 34566778888877653 2223345566677766665554
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.73 E-value=0.016 Score=54.50 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=20.8
Q ss_pred ccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeecccc
Q 045967 635 QSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSN 675 (929)
Q Consensus 635 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 675 (929)
..|.++++|+.+.+.. .+..+....|.++++|+.+.+.++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN 45 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc
Confidence 4567777777777764 455555666777777777666553
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.0025 Score=65.60 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=17.5
Q ss_pred CCcEEEccCCcCCCCCcccccCCCCCceeeccccccc
Q 045967 642 KLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLR 678 (929)
Q Consensus 642 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 678 (929)
+.+.|++.+|.++++ .....++.|++|.|+-|+|+
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs 54 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS 54 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc
Confidence 444555555555544 33444555555555555443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.0012 Score=67.90 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=55.5
Q ss_pred CCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEc
Q 045967 392 LPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYI 471 (929)
Q Consensus 392 l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 471 (929)
+.+.+.|+.-++.++..---..++.|+.|.|+-|+|+.. ..+..+++|++|+|..|.|..+..-..+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 345566666666665322112667777888888877644 346778888888888888777655556778888888888
Q ss_pred cCC
Q 045967 472 SHN 474 (929)
Q Consensus 472 s~N 474 (929)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 887
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.01 E-value=0.025 Score=53.06 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=37.0
Q ss_pred cccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEE
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~ 822 (929)
++.++.+++.++ +...-...|.++++|+.+.+.+ .+.......|..+++|+.+++..+ +.......|.+. .|+.+.
T Consensus 34 ~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 34 CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp -TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE
T ss_pred cccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEE
Confidence 344555665553 4434445566666677777754 333334445666677777777654 443334455555 666666
Q ss_pred Ccc
Q 045967 823 ISH 825 (929)
Q Consensus 823 Ls~ 825 (929)
+..
T Consensus 110 ~~~ 112 (129)
T PF13306_consen 110 IPS 112 (129)
T ss_dssp -TT
T ss_pred ECC
Confidence 553
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.55 E-value=0.00024 Score=81.94 Aligned_cols=175 Identities=25% Similarity=0.253 Sum_probs=83.8
Q ss_pred ceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCC----ccccCCC-CCCCEEeccCccC
Q 045967 242 LQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPV----PASLGNL-TQLTLLHLMHNNF 316 (929)
Q Consensus 242 L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~l----p~~~~~l-~~L~~L~Ls~n~l 316 (929)
+..|.|.+|.+....... +...+....+|..|++++|.+.+.- -..+... ..|++|++..|.+
T Consensus 89 l~~L~L~~~~l~~~~~~~------------l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l 156 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEE------------LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSL 156 (478)
T ss_pred HHHhhhhhCccccchHHH------------HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccc
Confidence 556666666665432222 2233455566666666666665321 1112222 4455566666655
Q ss_pred CCC----CccccCCCCCCCEEEccCCcCCCC----CCC-C----CCCCCCCEEeCCCCcCCCC-----------CCCCCc
Q 045967 317 SSH----IPSSLSNLVQLTCLDLSGNSFVGE----IPD-I----VNLTQVSFFDLSNNQLAGP-----------VPSHEM 372 (929)
Q Consensus 317 ~~~----~p~~l~~L~~L~~L~Ls~N~l~~~----~p~-l----~~L~~L~~L~Ls~n~l~~~-----------~p~~L~ 372 (929)
++. +.+.+.....++.++++.|.+... ++. + ....++++|.+++|.++.. .+..+.
T Consensus 157 ~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~ 236 (478)
T KOG4308|consen 157 TSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLR 236 (478)
T ss_pred cccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhH
Confidence 543 334455556666666666665310 000 2 2355677777777766521 011123
Q ss_pred EEEcCCCCCCCC----CCccccCC-CCCcEEEcccccCCCCCCCC------CCCCCcEEEecCCCCC
Q 045967 373 LIRLNNNSLSGT----IPSWLFSL-PLLEYVRLSDNQLSGHIDEF------PSKSLQNIYLSNNRLQ 428 (929)
Q Consensus 373 ~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~~~~------~l~~L~~L~Ls~N~l~ 428 (929)
.+++.+|.+... ....+..+ ..+++++++.|.++..-... .+..++++.+++|.+.
T Consensus 237 el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 237 ELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 344444444321 22223333 45566666666655332221 3345555555555554
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.03 E-value=0.02 Score=35.58 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=3.7
Q ss_pred eeeccCccCC
Q 045967 772 LLNLTHNHFT 781 (929)
Q Consensus 772 ~L~Ls~N~l~ 781 (929)
+|||++|+++
T Consensus 4 ~Ldls~n~l~ 13 (22)
T PF00560_consen 4 YLDLSGNNLT 13 (22)
T ss_dssp EEEETSSEES
T ss_pred EEECCCCcCE
Confidence 3333333333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.00 E-value=0.019 Score=35.70 Aligned_cols=21 Identities=52% Similarity=0.793 Sum_probs=13.9
Q ss_pred CCCEeeCCCCcCCCCCchhhcc
Q 045967 793 KLESLDLSSNNLAGKIPKQLAS 814 (929)
Q Consensus 793 ~L~~LdLs~N~ls~~ip~~l~~ 814 (929)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 56665554
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.39 E-value=0.0099 Score=69.77 Aligned_cols=87 Identities=21% Similarity=0.054 Sum_probs=38.5
Q ss_pred cCCCCCCcEEECCCC-CCCCCC----ccccCCCCCCCEEeccCcc-CCCCCccccC-CCCCCCEEEccCCc-CCCCCCC-
Q 045967 276 IGNLKLLGRLMLGYS-QFVGPV----PASLGNLTQLTLLHLMHNN-FSSHIPSSLS-NLVQLTCLDLSGNS-FVGEIPD- 346 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n-~l~~~l----p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~-~L~~L~~L~Ls~N~-l~~~~p~- 346 (929)
...+++|+.|+++++ ...... ......+++|+.|+++++. ++...-..+. .+++|++|.+.+|. ++..--.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345566666666652 111111 1122344566666666655 3332222222 25566666655554 2211000
Q ss_pred -CCCCCCCCEEeCCCCc
Q 045967 347 -IVNLTQVSFFDLSNNQ 362 (929)
Q Consensus 347 -l~~L~~L~~L~Ls~n~ 362 (929)
...+++|++|+++.+.
T Consensus 290 i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhcCcccEEeeecCc
Confidence 2344555555555443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.35 E-value=0.0059 Score=70.59 Aligned_cols=70 Identities=23% Similarity=0.193 Sum_probs=33.6
Q ss_pred hhhhccCCCCEEeCCCCcCcCCCccccccCcc---cccceeeccCcccCCC----CcccccCCCCCcEEEccCCcCC
Q 045967 585 HSICDIIALDVLDLSNNRLSGTIPECIGNFSP---WLSVSLNLNNNELEGA----NPQSLVNCTKLEVLDIGNNKIN 654 (929)
Q Consensus 585 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~---ll~~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 654 (929)
..+.....|+.|++++|.+.+.--..+.+.-. -....|++..|.++.. +...+.....++.+|++.|.+.
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 34444555666666666655322111111000 0112345555555443 2344555677777777777764
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.16 E-value=0.11 Score=61.03 Aligned_cols=87 Identities=20% Similarity=0.110 Sum_probs=46.6
Q ss_pred ccCCCCCcEEEcccc-cCCCCCCC----C--CCCCCcEEEecCCC-CCCCCcccccc-CCCCcEEeccCCC-CcCccchh
Q 045967 389 LFSLPLLEYVRLSDN-QLSGHIDE----F--PSKSLQNIYLSNNR-LQGSIPSSIFE-LVNLIDLQLDSNN-FSGIAEPY 458 (929)
Q Consensus 389 l~~l~~L~~L~Ls~N-~l~~~~~~----~--~l~~L~~L~Ls~N~-l~~~~p~~l~~-l~~L~~L~Ls~N~-l~~~~~~~ 458 (929)
...+++|+.|+++++ ......+. . .+++|+.|+++.+. ++...-..+.. +++|+.|.+..+. ++...-..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 445677777777663 11111110 1 45667777777766 44333333332 6677777766555 34332223
Q ss_pred hhhccCcccEEEccCCC
Q 045967 459 MFAKLIKLKYLYISHNS 475 (929)
Q Consensus 459 ~~~~l~~L~~L~Ls~N~ 475 (929)
....++.|++|+++++.
T Consensus 290 i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhcCcccEEeeecCc
Confidence 34456667777777663
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.46 E-value=0.021 Score=57.54 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=58.7
Q ss_pred cccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEE
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~ 822 (929)
....+.||++.|++- ..-..|.-++.|..||++.|++. ..|..++++..+..+++..|..+ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 345667777777765 23344556667777777777777 67777777777777777777777 5677777777777777
Q ss_pred CccCcC
Q 045967 823 ISHNRL 828 (929)
Q Consensus 823 Ls~N~l 828 (929)
+-.|++
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 777775
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.06 E-value=0.013 Score=58.90 Aligned_cols=89 Identities=20% Similarity=0.188 Sum_probs=71.0
Q ss_pred hhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccC
Q 045967 234 ALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMH 313 (929)
Q Consensus 234 ~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~ 313 (929)
..+..+.+++.||++.|.+. .+-..+..++.|..||++.|.+. .+|..++.+..++++++..
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-----------------n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~ 97 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-----------------NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHK 97 (326)
T ss_pred hhhhccceeeeehhhhhHHH-----------------hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhc
Confidence 35667889999999988652 12234556778888999988876 4788899999999999988
Q ss_pred ccCCCCCccccCCCCCCCEEEccCCcCC
Q 045967 314 NNFSSHIPSSLSNLVQLTCLDLSGNSFV 341 (929)
Q Consensus 314 n~l~~~~p~~l~~L~~L~~L~Ls~N~l~ 341 (929)
|..+ ..|.+++.+++++++++-+|.+.
T Consensus 98 n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 98 NNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cchh-hCCccccccCCcchhhhccCcch
Confidence 8887 67889999999999999888765
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.55 E-value=0.45 Score=27.43 Aligned_cols=10 Identities=50% Similarity=0.823 Sum_probs=3.2
Q ss_pred cceeeccCcc
Q 045967 770 LRLLNLTHNH 779 (929)
Q Consensus 770 L~~L~Ls~N~ 779 (929)
|+.|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.82 E-value=1 Score=28.97 Aligned_cols=14 Identities=50% Similarity=0.740 Sum_probs=7.6
Q ss_pred CCCCEeeCCCCcCC
Q 045967 792 AKLESLDLSSNNLA 805 (929)
Q Consensus 792 ~~L~~LdLs~N~ls 805 (929)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.82 E-value=1 Score=28.97 Aligned_cols=14 Identities=50% Similarity=0.740 Sum_probs=7.6
Q ss_pred CCCCEeeCCCCcCC
Q 045967 792 AKLESLDLSSNNLA 805 (929)
Q Consensus 792 ~~L~~LdLs~N~ls 805 (929)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.24 E-value=0.72 Score=46.09 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=20.5
Q ss_pred cccccEeecccc-ccCcccchhhccccccceeeccC
Q 045967 743 LTVFTTIDFSSN-GFDGEISQVIGKLHSLRLLNLTH 777 (929)
Q Consensus 743 l~~L~~LdLs~N-~l~~~ip~~l~~L~~L~~L~Ls~ 777 (929)
.++|+.|++++| +||..--..+..+++|+.|.|.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 456666666655 35544455566666666665543
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.36 E-value=1.6 Score=28.05 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=11.7
Q ss_pred ccccceeeccCccCCCC
Q 045967 767 LHSLRLLNLTHNHFTGK 783 (929)
Q Consensus 767 L~~L~~L~Ls~N~l~~~ 783 (929)
+++|+.|+|++|+|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35677777777777743
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.36 E-value=1.6 Score=28.05 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=11.7
Q ss_pred ccccceeeccCccCCCC
Q 045967 767 LHSLRLLNLTHNHFTGK 783 (929)
Q Consensus 767 L~~L~~L~Ls~N~l~~~ 783 (929)
+++|+.|+|++|+|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35677777777777743
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.24 E-value=0.47 Score=29.99 Aligned_cols=15 Identities=47% Similarity=0.756 Sum_probs=6.1
Q ss_pred CCCCEeeCCCCcCCC
Q 045967 792 AKLESLDLSSNNLAG 806 (929)
Q Consensus 792 ~~L~~LdLs~N~ls~ 806 (929)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344455555555443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.29 E-value=0.69 Score=46.21 Aligned_cols=61 Identities=23% Similarity=0.191 Sum_probs=30.5
Q ss_pred ccccCCCCCcEEEcccccCCCCCCCC----CCCCCcEEEecCC-CCCCCCccccccCCCCcEEecc
Q 045967 387 SWLFSLPLLEYVRLSDNQLSGHIDEF----PSKSLQNIYLSNN-RLQGSIPSSIFELVNLIDLQLD 447 (929)
Q Consensus 387 ~~l~~l~~L~~L~Ls~N~l~~~~~~~----~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls 447 (929)
+.+.+++.++.|.+.++.--+..... ..++|+.|++++| +|+...-..+..+++|+.|.+.
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 44556667777776666422111000 3456666666655 3444333444455555555444
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.95 E-value=7.7 Score=25.20 Aligned_cols=14 Identities=50% Similarity=0.745 Sum_probs=8.7
Q ss_pred CCCCEeeCCCCcCC
Q 045967 792 AKLESLDLSSNNLA 805 (929)
Q Consensus 792 ~~L~~LdLs~N~ls 805 (929)
++|+.|+|++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.69 E-value=66 Score=36.72 Aligned_cols=65 Identities=29% Similarity=0.177 Sum_probs=36.1
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccC---CCCCCCEEEccCCcCCCCCCC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLS---NLVQLTCLDLSGNSFVGEIPD 346 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~---~L~~L~~L~Ls~N~l~~~~p~ 346 (929)
+.+++++++.|.+....|-.+..- ---++++.|.++...-..+. .=..+.+++++.|.....+|.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p--~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQP--GNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred chhhhhccCCCcccccCCccccCC--CCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 457788888887766655444321 11156666665532111110 112466777777777766666
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=46.31 E-value=13 Score=24.21 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=5.4
Q ss_pred cceeeccCccCC
Q 045967 770 LRLLNLTHNHFT 781 (929)
Q Consensus 770 L~~L~Ls~N~l~ 781 (929)
|+.|+.++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444444444444
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=46.01 E-value=15 Score=24.22 Aligned_cols=14 Identities=50% Similarity=0.712 Sum_probs=8.6
Q ss_pred CCCCEeeCCCCcCC
Q 045967 792 AKLESLDLSSNNLA 805 (929)
Q Consensus 792 ~~L~~LdLs~N~ls 805 (929)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666665
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=42.42 E-value=53 Score=37.43 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=11.1
Q ss_pred CCCCEEEccCCcCCCCCC
Q 045967 328 VQLTCLDLSGNSFVGEIP 345 (929)
Q Consensus 328 ~~L~~L~Ls~N~l~~~~p 345 (929)
+.+++++++.|.+....|
T Consensus 165 pr~r~~dls~npi~dkvp 182 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVP 182 (553)
T ss_pred chhhhhccCCCcccccCC
Confidence 456677777776654433
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.54 E-value=16 Score=42.15 Aligned_cols=44 Identities=25% Similarity=0.142 Sum_probs=19.8
Q ss_pred hcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccc
Q 045967 509 RTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITK 552 (929)
Q Consensus 509 ~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~ 552 (929)
...++|+.|+|++|...-....++.......|++|-+.+|.+..
T Consensus 241 q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 241 QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34566666666666221111122211223345555555555543
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.54 E-value=27 Score=48.32 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=16.7
Q ss_pred eccCccCCCCCCccccCcCCCCEeeCCCCcCC
Q 045967 774 NLTHNHFTGKIPSSLGNLAKLESLDLSSNNLA 805 (929)
Q Consensus 774 ~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls 805 (929)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35555555444444555555555555555444
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.18 E-value=35 Score=39.66 Aligned_cols=16 Identities=38% Similarity=0.411 Sum_probs=9.1
Q ss_pred CCCCCcEEEecCCCCC
Q 045967 413 PSKSLQNIYLSNNRLQ 428 (929)
Q Consensus 413 ~l~~L~~L~Ls~N~l~ 428 (929)
+.+.+..++|++|++.
T Consensus 216 n~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY 231 (585)
T ss_pred CCcceeeeecccchhh
Confidence 3455566666666554
No 94
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.24 E-value=48 Score=37.75 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.0
Q ss_pred eeeeehhhhhhhhhhhhHHHHHh
Q 045967 889 KFAKIGYGSGLVIGMSIGYMVFA 911 (929)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~ 911 (929)
.+++|++++++|+|.+|+|+.|+
T Consensus 368 aIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 368 AIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred ceeeeeehhHHHHHHHHHHHhhh
Confidence 45677777888889889888874
No 95
>PF15050 SCIMP: SCIMP protein
Probab=20.64 E-value=44 Score=30.29 Aligned_cols=37 Identities=11% Similarity=0.520 Sum_probs=18.4
Q ss_pred cceeeeehhhhhhhhhhhhHHHHHhcCChhHHHHhhhhhccC
Q 045967 887 DWKFAKIGYGSGLVIGMSIGYMVFASGEPLWFMKMVVTWQSK 928 (929)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 928 (929)
.|+++++++ +++++++|+++++.. .|.+|--++|-=+
T Consensus 8 FWiiLAVaI---I~vS~~lglIlyCvc--R~~lRqGkkweia 44 (133)
T PF15050_consen 8 FWIILAVAI---ILVSVVLGLILYCVC--RWQLRQGKKWEIA 44 (133)
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHH--HHHHHccccceec
Confidence 355544442 333444444444311 5777777777543
Done!