Query 045967
Match_columns 929
No_of_seqs 998 out of 5106
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 12:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.4E-81 2.5E-85 771.0 45.7 668 169-865 7-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.4E-63 1.1E-67 613.2 38.4 607 213-849 31-714 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-54 8.6E-59 528.2 45.8 562 213-834 4-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-52 9.1E-57 510.2 43.7 565 243-856 7-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-51 9.8E-56 511.7 41.1 516 275-865 43-592 (844)
6 3t6q_A CD180 antigen; protein- 100.0 8.1E-51 2.8E-55 490.3 40.8 529 215-835 14-566 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 7.6E-50 2.6E-54 481.9 36.2 529 217-835 15-564 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2.2E-49 7.6E-54 477.8 38.9 516 272-854 27-562 (606)
9 4eco_A Uncharacterized protein 100.0 6.4E-51 2.2E-55 492.2 21.2 503 173-830 29-601 (636)
10 4ecn_A Leucine-rich repeat pro 100.0 9.9E-49 3.4E-53 481.1 29.6 522 169-828 264-863 (876)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-47 4.1E-52 479.0 35.6 513 278-857 22-565 (844)
12 3vq2_A TLR4, TOLL-like recepto 100.0 8.3E-47 2.8E-51 455.3 37.0 527 241-857 12-563 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-46 8.4E-51 445.7 32.3 460 280-835 26-516 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 6.6E-46 2.3E-50 444.0 31.5 492 240-837 28-539 (570)
15 4g8a_A TOLL-like receptor 4; l 100.0 3E-42 1E-46 417.4 37.1 530 217-834 35-585 (635)
16 2z63_A TOLL-like receptor 4, v 100.0 1.3E-42 4.5E-47 415.4 32.0 481 280-854 28-533 (570)
17 2z7x_B TOLL-like receptor 1, v 100.0 8.1E-43 2.8E-47 412.5 25.3 465 243-834 3-486 (520)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-41 4.4E-46 405.0 30.7 476 212-809 3-514 (549)
19 4eco_A Uncharacterized protein 100.0 9.7E-42 3.3E-46 412.0 18.6 435 371-853 83-601 (636)
20 4ecn_A Leucine-rich repeat pro 100.0 2.8E-40 9.6E-45 406.1 30.5 454 280-831 323-842 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.6E-40 1.2E-44 393.5 27.2 467 242-835 33-516 (562)
22 4g8a_A TOLL-like receptor 4; l 100.0 6E-39 2.1E-43 388.3 38.0 504 271-855 45-583 (635)
23 2z7x_B TOLL-like receptor 1, v 100.0 4.2E-40 1.5E-44 389.2 22.2 432 240-809 21-485 (520)
24 1jl5_A Outer protein YOPM; leu 100.0 3.2E-39 1.1E-43 373.3 20.5 397 278-835 9-417 (454)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.9E-37 1.3E-41 367.2 28.7 451 279-854 30-512 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 1.9E-36 6.5E-41 351.6 30.8 365 371-838 32-417 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.7E-36 5.9E-41 350.5 26.6 356 238-664 9-382 (454)
28 1ogq_A PGIP-2, polygalacturona 100.0 2E-37 6.8E-42 341.2 16.8 292 170-523 2-302 (313)
29 3v47_A TOLL-like receptor 5B a 100.0 1.4E-35 4.7E-40 344.3 31.3 378 211-678 6-408 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 4.4E-35 1.5E-39 339.0 29.4 352 275-706 37-401 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 4.5E-35 1.6E-39 338.9 27.5 364 292-835 30-393 (457)
32 1o6v_A Internalin A; bacterial 100.0 2.6E-32 8.8E-37 317.7 35.4 343 239-678 45-388 (466)
33 1o6v_A Internalin A; bacterial 100.0 5.4E-32 1.9E-36 315.0 33.3 329 233-656 61-390 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 1.5E-32 5.1E-37 320.8 23.4 346 396-856 14-360 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 6.4E-31 2.2E-35 298.7 23.5 342 202-605 2-353 (390)
36 2id5_A Lingo-1, leucine rich r 100.0 2E-30 6.8E-35 302.8 27.8 293 281-604 33-333 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 2E-30 6.7E-35 294.7 23.6 331 392-855 44-377 (390)
38 3oja_B Anopheles plasmodium-re 100.0 1.8E-30 6.1E-35 311.6 23.6 332 415-856 51-384 (597)
39 3oja_B Anopheles plasmodium-re 100.0 3.2E-30 1.1E-34 309.3 25.0 335 202-571 8-357 (597)
40 4fcg_A Uncharacterized protein 100.0 7.7E-31 2.6E-35 290.3 15.4 251 169-474 22-287 (328)
41 4fmz_A Internalin; leucine ric 100.0 4.2E-29 1.4E-33 278.9 29.5 305 277-678 41-346 (347)
42 1ogq_A PGIP-2, polygalacturona 100.0 1E-30 3.4E-35 287.6 15.4 258 560-861 51-312 (313)
43 4fmz_A Internalin; leucine ric 100.0 9.4E-29 3.2E-33 276.1 30.4 307 300-717 40-346 (347)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-27 8.7E-32 262.9 25.9 290 394-827 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 5.8E-27 2E-31 259.7 26.6 291 394-827 32-330 (330)
46 1xku_A Decorin; proteoglycan, 99.9 1.5E-26 5.2E-31 256.4 27.4 274 280-602 52-330 (330)
47 1z7x_W Ribonuclease inhibitor; 99.9 1.9E-29 6.5E-34 293.1 3.5 86 745-830 314-412 (461)
48 2ft3_A Biglycan; proteoglycan, 99.9 1.3E-26 4.4E-31 257.2 24.9 273 280-602 54-331 (332)
49 1z7x_W Ribonuclease inhibitor; 99.9 3.7E-29 1.3E-33 290.6 2.8 382 414-831 2-442 (461)
50 2z80_A TOLL-like receptor 2, v 99.9 1.6E-26 5.5E-31 258.7 19.3 250 281-552 53-315 (353)
51 3ogk_B Coronatine-insensitive 99.9 3.7E-28 1.3E-32 291.6 1.4 233 274-546 67-326 (592)
52 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-25 4.9E-30 267.0 20.3 299 201-615 10-308 (622)
53 3ogk_B Coronatine-insensitive 99.9 5.7E-28 1.9E-32 289.9 -0.9 433 211-678 40-526 (592)
54 2z80_A TOLL-like receptor 2, v 99.9 1.8E-25 6E-30 250.2 15.7 276 488-834 30-319 (353)
55 2z66_A Variable lymphocyte rec 99.9 3E-25 1E-29 243.1 16.0 245 213-502 7-261 (306)
56 3zyi_A Leucine-rich repeat-con 99.9 1.2E-24 4.2E-29 251.9 21.7 251 541-833 57-307 (452)
57 4fcg_A Uncharacterized protein 99.9 6.4E-25 2.2E-29 242.8 17.9 234 489-829 81-314 (328)
58 3zyj_A Leucine-rich repeat-con 99.9 1.8E-24 6.1E-29 249.6 21.5 250 542-833 47-296 (440)
59 2z66_A Variable lymphocyte rec 99.9 1.4E-24 4.7E-29 237.9 18.9 253 493-833 11-265 (306)
60 1ozn_A Reticulon 4 receptor; N 99.9 1E-24 3.5E-29 236.3 16.7 230 541-835 14-244 (285)
61 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-23 4.6E-28 227.5 20.0 196 280-476 32-237 (285)
62 3g06_A SSPH2 (leucine-rich rep 99.9 3.8E-23 1.3E-27 246.2 24.9 263 464-834 40-302 (622)
63 1wwl_A Monocyte differentiatio 99.9 4.8E-25 1.6E-29 242.2 7.9 249 509-831 40-311 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-25 9.5E-30 244.7 5.3 249 507-834 29-281 (317)
65 3o53_A Protein LRIM1, AGAP0063 99.9 5E-25 1.7E-29 242.7 6.8 237 283-550 13-249 (317)
66 3zyi_A Leucine-rich repeat-con 99.9 5E-23 1.7E-27 238.4 23.3 247 215-526 56-304 (452)
67 2o6q_A Variable lymphocyte rec 99.9 9.2E-23 3.2E-27 219.1 23.0 214 210-477 2-218 (270)
68 1wwl_A Monocyte differentiatio 99.9 3.7E-25 1.3E-29 243.1 4.2 247 277-552 40-310 (312)
69 3zyj_A Leucine-rich repeat-con 99.9 9.5E-23 3.2E-27 235.2 22.3 247 215-526 45-293 (440)
70 3oja_A Leucine-rich immune mol 99.9 1E-23 3.4E-28 245.9 10.7 235 511-824 33-270 (487)
71 2p1m_B Transport inhibitor res 99.9 5E-26 1.7E-30 273.1 -11.8 416 233-678 59-519 (594)
72 3oja_A Leucine-rich immune mol 99.9 3.3E-23 1.1E-27 241.6 12.1 231 279-546 33-270 (487)
73 2p1m_B Transport inhibitor res 99.9 2.5E-24 8.5E-29 258.3 -1.0 401 389-829 62-519 (594)
74 2z62_A TOLL-like receptor 4, v 99.9 1.4E-21 4.7E-26 210.6 19.7 212 559-835 28-243 (276)
75 2o6q_A Variable lymphocyte rec 99.9 5.3E-21 1.8E-25 205.3 20.2 183 621-834 41-223 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 3.2E-20 1.1E-24 199.9 22.6 203 281-527 29-239 (276)
77 3rfs_A Internalin B, repeat mo 99.9 1.9E-21 6.3E-26 209.1 12.6 183 587-835 59-241 (272)
78 1p9a_G Platelet glycoprotein I 99.8 2.3E-20 8E-25 202.3 21.2 176 276-475 6-183 (290)
79 3m19_A Variable lymphocyte rec 99.8 1.8E-20 6.2E-25 198.8 19.0 189 211-454 3-194 (251)
80 3rfs_A Internalin B, repeat mo 99.8 4E-21 1.4E-25 206.5 12.4 227 512-816 19-246 (272)
81 4glp_A Monocyte differentiatio 99.8 8.7E-21 3E-25 208.0 13.2 84 742-830 222-308 (310)
82 3m19_A Variable lymphocyte rec 99.8 2.3E-20 7.8E-25 198.1 15.3 213 591-864 14-232 (251)
83 1p9a_G Platelet glycoprotein I 99.8 1.8E-19 6.3E-24 195.2 21.2 201 236-477 6-208 (290)
84 3goz_A Leucine-rich repeat-con 99.8 5E-21 1.7E-25 214.8 8.5 252 517-831 3-299 (362)
85 2ast_B S-phase kinase-associat 99.8 1.1E-21 3.9E-26 217.5 2.6 264 210-532 34-313 (336)
86 4glp_A Monocyte differentiatio 99.8 2.8E-20 9.5E-25 204.0 12.1 192 279-477 90-307 (310)
87 3cvr_A Invasion plasmid antige 99.8 1.2E-19 4E-24 213.5 15.9 207 202-464 32-254 (571)
88 2ca6_A RAN GTPase-activating p 99.8 1.1E-20 3.7E-25 214.0 6.8 243 557-833 30-320 (386)
89 2ca6_A RAN GTPase-activating p 99.8 1.6E-21 5.4E-26 220.9 -0.6 249 232-529 24-320 (386)
90 2xwt_C Thyrotropin receptor; s 99.8 9.7E-20 3.3E-24 191.7 12.3 194 241-474 32-236 (239)
91 3goz_A Leucine-rich repeat-con 99.8 1.1E-20 3.7E-25 212.0 4.9 243 271-527 13-299 (362)
92 1h6u_A Internalin H; cell adhe 99.8 4.5E-19 1.6E-23 194.0 17.7 190 239-476 40-229 (308)
93 2xwt_C Thyrotropin receptor; s 99.8 3.1E-19 1.1E-23 187.8 13.2 175 280-476 31-217 (239)
94 2ast_B S-phase kinase-associat 99.8 4.9E-20 1.7E-24 204.3 7.2 151 281-474 48-205 (336)
95 1h6u_A Internalin H; cell adhe 99.8 8.8E-19 3E-23 191.7 17.1 195 276-526 37-231 (308)
96 2o6s_A Variable lymphocyte rec 99.8 1.2E-18 4.1E-23 179.1 14.7 183 213-440 7-190 (208)
97 3e6j_A Variable lymphocyte rec 99.8 1.2E-17 4E-22 174.5 17.5 130 280-428 40-172 (229)
98 4ay9_X Follicle-stimulating ho 99.7 1.1E-17 3.9E-22 186.4 15.5 239 543-827 14-257 (350)
99 3cvr_A Invasion plasmid antige 99.7 3.4E-17 1.1E-21 192.6 19.2 192 280-532 59-250 (571)
100 2v70_A SLIT-2, SLIT homolog 2 99.7 6.9E-18 2.3E-22 175.0 8.9 158 644-834 14-171 (220)
101 4ay9_X Follicle-stimulating ho 99.7 9E-17 3.1E-21 179.1 17.6 237 331-601 12-256 (350)
102 2o6s_A Variable lymphocyte rec 99.7 5.7E-17 1.9E-21 166.5 14.2 194 542-811 11-204 (208)
103 1h6t_A Internalin B; cell adhe 99.7 4.8E-17 1.6E-21 176.3 14.1 171 276-476 42-212 (291)
104 2xot_A Amphoterin-induced prot 99.7 3.2E-17 1.1E-21 183.6 12.8 179 594-832 21-205 (361)
105 1h6t_A Internalin B; cell adhe 99.7 9.7E-17 3.3E-21 173.9 14.9 172 238-454 44-215 (291)
106 3e6j_A Variable lymphocyte rec 99.7 1.7E-16 5.7E-21 165.7 15.2 155 621-834 23-177 (229)
107 2v9t_B SLIT homolog 2 protein 99.7 5.9E-17 2E-21 168.0 10.6 91 743-833 79-169 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-16 8.9E-21 163.1 13.5 156 594-809 14-170 (220)
109 1m9s_A Internalin B; cell inva 99.7 2.4E-16 8.3E-21 187.3 13.5 166 279-474 42-207 (605)
110 1m9s_A Internalin B; cell inva 99.7 8E-16 2.7E-20 182.9 17.6 191 280-526 21-211 (605)
111 2v9t_B SLIT homolog 2 protein 99.6 6.7E-16 2.3E-20 160.0 13.8 153 594-806 14-166 (220)
112 2xot_A Amphoterin-induced prot 99.6 1.3E-15 4.3E-20 170.5 16.0 155 281-476 40-201 (361)
113 1dce_A Protein (RAB geranylger 99.6 5.1E-18 1.7E-22 200.6 -5.9 90 743-835 462-552 (567)
114 1w8a_A SLIT protein; signaling 99.6 2.8E-16 9.5E-21 159.2 7.1 114 743-856 53-166 (192)
115 4b8c_D Glucose-repressible alc 99.6 7.7E-17 2.6E-21 196.4 2.7 220 171-456 129-358 (727)
116 4ezg_A Putative uncharacterize 99.6 1.2E-15 4.2E-20 155.1 10.8 85 276-362 62-147 (197)
117 1xeu_A Internalin C; cellular 99.6 5.9E-16 2E-20 165.1 8.6 149 276-452 37-185 (263)
118 1dce_A Protein (RAB geranylger 99.6 6.9E-18 2.3E-22 199.5 -7.1 216 487-823 347-567 (567)
119 1xeu_A Internalin C; cellular 99.6 5.9E-16 2E-20 165.1 7.4 168 278-476 17-184 (263)
120 4ezg_A Putative uncharacterize 99.6 7.9E-15 2.7E-19 149.1 12.4 154 348-552 41-195 (197)
121 4b8c_D Glucose-repressible alc 99.6 1.3E-15 4.5E-20 185.6 6.9 182 584-832 217-407 (727)
122 1w8a_A SLIT protein; signaling 99.5 2.3E-14 7.9E-19 145.0 10.9 135 213-368 8-143 (192)
123 2ell_A Acidic leucine-rich nuc 99.5 3.5E-14 1.2E-18 140.2 9.2 84 279-364 23-108 (168)
124 2ell_A Acidic leucine-rich nuc 99.5 4.4E-14 1.5E-18 139.6 9.8 133 239-407 23-161 (168)
125 2wfh_A SLIT homolog 2 protein 99.5 4.7E-14 1.6E-18 142.8 9.7 91 743-833 53-143 (193)
126 2o6r_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 136.2 12.9 134 213-368 7-141 (177)
127 2je0_A Acidic leucine-rich nuc 99.5 5.4E-14 1.9E-18 135.9 7.7 128 641-825 17-149 (149)
128 2je0_A Acidic leucine-rich nuc 99.5 8.6E-14 3E-18 134.4 8.4 132 239-402 16-149 (149)
129 2o6r_A Variable lymphocyte rec 99.5 1.5E-13 5.3E-18 136.9 10.4 92 743-834 51-142 (177)
130 3sb4_A Hypothetical leucine ri 99.4 4.5E-13 1.5E-17 147.8 12.7 86 742-829 224-310 (329)
131 3g39_A Variable lymphocyte rec 99.4 6E-13 2E-17 131.7 9.9 92 743-834 29-120 (170)
132 3sb4_A Hypothetical leucine ri 99.4 2E-13 6.7E-18 150.7 5.1 59 766-825 224-283 (329)
133 2wfh_A SLIT homolog 2 protein 99.4 3.8E-12 1.3E-16 128.7 13.7 127 541-678 13-139 (193)
134 1ds9_A Outer arm dynein; leuci 99.3 3.5E-14 1.2E-18 144.4 -2.5 161 587-829 14-185 (198)
135 2r9u_A Variable lymphocyte rec 99.3 1.8E-12 6.2E-17 128.7 9.9 91 743-833 32-122 (174)
136 1a9n_A U2A', U2A'; complex (nu 99.3 1.4E-12 4.7E-17 129.9 7.9 81 281-363 43-125 (176)
137 1a9n_A U2A', U2A'; complex (nu 99.3 2.5E-12 8.6E-17 128.0 9.2 133 275-453 14-154 (176)
138 1ds9_A Outer arm dynein; leuci 99.3 2.1E-14 7E-19 146.1 -9.6 84 277-363 15-105 (198)
139 4fdw_A Leucine rich hypothetic 99.2 6.6E-11 2.3E-15 133.6 16.1 82 585-672 174-255 (401)
140 3g39_A Variable lymphocyte rec 99.2 5.4E-11 1.8E-15 117.6 12.9 87 280-366 30-117 (170)
141 2r9u_A Variable lymphocyte rec 99.2 6.7E-11 2.3E-15 117.3 12.8 104 243-365 15-119 (174)
142 4fs7_A Uncharacterized protein 99.2 6.9E-10 2.4E-14 125.4 19.4 42 633-675 335-376 (394)
143 3un9_A NLR family member X1; l 99.1 6.7E-12 2.3E-16 140.4 1.3 165 641-830 72-253 (372)
144 2ifg_A High affinity nerve gro 99.1 1.8E-10 6.1E-15 127.8 11.9 92 272-364 24-116 (347)
145 4fdw_A Leucine rich hypothetic 99.1 1E-09 3.4E-14 123.9 17.8 243 513-828 136-382 (401)
146 2ifg_A High affinity nerve gro 99.0 4.4E-10 1.5E-14 124.6 9.6 90 743-833 30-120 (347)
147 4fs7_A Uncharacterized protein 99.0 8.1E-09 2.8E-13 116.6 19.6 52 743-797 342-393 (394)
148 3un9_A NLR family member X1; l 99.0 3.9E-11 1.3E-15 134.1 -1.2 45 559-607 211-255 (372)
149 4gt6_A Cell surface protein; l 98.7 2.6E-07 8.7E-12 104.2 19.6 81 743-828 310-390 (394)
150 4gt6_A Cell surface protein; l 98.6 1.6E-06 5.6E-11 97.5 22.2 84 275-360 58-146 (394)
151 2ra8_A Uncharacterized protein 98.5 1.1E-07 3.6E-12 105.4 5.8 109 239-359 106-227 (362)
152 2ra8_A Uncharacterized protein 98.4 4.4E-07 1.5E-11 100.5 9.2 141 458-606 166-322 (362)
153 3rw6_A Nuclear RNA export fact 98.3 2.2E-07 7.4E-12 97.7 3.0 66 766-833 168-237 (267)
154 1io0_A Tropomodulin; LRR prote 98.2 1.2E-07 4.1E-12 94.7 -0.1 121 232-364 28-164 (185)
155 4h09_A Hypothetical leucine ri 98.2 8.1E-05 2.8E-09 83.0 20.5 54 621-675 290-343 (379)
156 1io0_A Tropomodulin; LRR prote 98.1 7.7E-07 2.6E-11 88.8 3.3 87 743-829 64-164 (185)
157 3rw6_A Nuclear RNA export fact 98.1 9.6E-07 3.3E-11 92.8 4.0 80 741-822 167-257 (267)
158 4h09_A Hypothetical leucine ri 98.1 6E-05 2.1E-09 84.1 18.3 72 743-816 285-356 (379)
159 3e4g_A ATP synthase subunit S, 97.7 1E-05 3.6E-10 78.8 1.4 84 744-827 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.3 0.00025 8.5E-09 69.1 5.9 36 641-676 61-96 (176)
161 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0013 4.3E-08 65.3 4.2 86 743-828 69-169 (197)
162 3rfe_A Platelet glycoprotein I 96.5 0.0037 1.3E-07 57.8 6.7 59 772-832 12-71 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00044 1.5E-08 68.6 0.1 120 232-363 33-169 (197)
164 3rfe_A Platelet glycoprotein I 95.7 0.017 5.7E-07 53.3 6.7 56 284-341 12-68 (130)
165 2lz0_A Uncharacterized protein 34.4 45 0.0015 28.4 4.7 47 628-675 7-53 (100)
166 2l2t_A Receptor tyrosine-prote 32.7 38 0.0013 24.1 3.1 11 918-928 32-42 (44)
167 2lz0_A Uncharacterized protein 20.0 1.3E+02 0.0044 25.5 4.9 40 297-337 13-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.4e-81 Score=771.03 Aligned_cols=668 Identities=29% Similarity=0.429 Sum_probs=533.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCCcccccccccccCCCCCCCCCCCCcccccCCCCc---cccc----Cc---hhhhhcC
Q 045967 169 KHCPHEQSSALIQFKQLFSFDGDSSFVCQHSYPKMISWKKDTNYCSWDGLTCDMATV---SLET----PV---FQALVQN 238 (929)
Q Consensus 169 ~~c~~~e~~aLl~~k~~l~~~~~~~~~~~~~~~~l~sW~~~~~~C~W~Gv~C~~~~~---~~~~----~~---~~~~l~~ 238 (929)
..+.++|++|||+||+++.++. .+++|+.+++||+|+||+|+..++ .+.. .. +++.+.+
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-----------~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-----------LLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLS 75 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-----------SSTTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-----------cccCCCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhc
Confidence 3456889999999999998542 588998888999999999983211 1110 11 5666666
Q ss_pred CCCceEEEcCCCCCCCCCCccccccccccc---------cccccc--ccCCCCCCcEEECCCCCCCCCCcccc-CCCCCC
Q 045967 239 MTKLQVLSLASLEMSTVVPDSLKNLSSSLT---------FSELAN--SIGNLKLLGRLMLGYSQFVGPVPASL-GNLTQL 306 (929)
Q Consensus 239 l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~---------~g~ip~--~l~~l~~L~~L~Ls~n~l~~~lp~~~-~~l~~L 306 (929)
+++|+.++++.+.+.. +|..++++ .+|+ .|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|
T Consensus 76 L~~L~~l~~~~~~~~~-l~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 76 LTGLESLFLSNSHING-SVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp CTTCCEEECTTSCEEE-CCCCCCCC-TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred cCcccccCCcCCCcCC-CchhhccC-CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 6666666666654421 23444444 3333 345666 77777888888888887777777655 677888
Q ss_pred CEEeccCccCCCCCccc---cCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCC-----CcEEEcCC
Q 045967 307 TLLHLMHNNFSSHIPSS---LSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSH-----EMLIRLNN 378 (929)
Q Consensus 307 ~~L~Ls~n~l~~~~p~~---l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~-----L~~L~Ls~ 378 (929)
++|+|++|++++..|.. +.++++|++|++++|.+++.++ +.++++|++|++++|.+++.+|.. |++|++++
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISG 232 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCS
T ss_pred CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcC
Confidence 88888888887777766 6788888888888888876655 378888999999999888877642 88999999
Q ss_pred CCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccC-CCCcEEeccCCCCcCccch
Q 045967 379 NSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFEL-VNLIDLQLDSNNFSGIAEP 457 (929)
Q Consensus 379 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~~~ 457 (929)
|.+++.+|..++++++|++|++++|.+++.++...+++|++|++++|++++.+|..+... ++|++|++++|++++..|
T Consensus 233 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p- 311 (768)
T 3rgz_A 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP- 311 (768)
T ss_dssp SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC-
T ss_pred CcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc-
Confidence 999988888899999999999999998888887788899999999999988888888775 899999999999988876
Q ss_pred hhhhccCcccEEEccCCCCCCCcccccc-C-CCCCcceeeccccCCC-CCChhhhccc-ccceeccCCCcCCCCCchhhh
Q 045967 458 YMFAKLIKLKYLYISHNSLSLGTTFKID-I-PFPKFSYLSLFACNIS-AFPSFLRTQD-KLFYLDLSESKIDGQIPRWIS 533 (929)
Q Consensus 458 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~-~~~~L~~L~L~~n~l~-~lp~~l~~~~-~L~~L~Ls~N~l~~~~p~~l~ 533 (929)
..|+++++|++|++++| .+.+.++.. + .+++|++|++++|.++ .+|..+..++ +|++|++++|.+.+.+|..+.
T Consensus 312 ~~~~~l~~L~~L~L~~n--~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSN--NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp GGGGGCTTCCEEECCSS--EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred hHHhcCCCccEEECCCC--cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence 78899999999999999 555666654 3 7889999999999887 8888888887 899999999999888888773
Q ss_pred ccCCCCccEEeccccccccccc---CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccc
Q 045967 534 KIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPEC 610 (929)
Q Consensus 534 ~~~~~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 610 (929)
...+++|++|++++|.+++..+ ..+++|++|++++|.++ +.+|..++.+++|++|++++|++++.+|..
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS--------GTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE--------SCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc--------CcccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 2337889999999999987766 45678999999999998 677888899999999999999999999999
Q ss_pred cccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccc----------
Q 045967 611 IGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGS---------- 680 (929)
Q Consensus 611 l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---------- 680 (929)
+..++.+ +.|++++|.+++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|++++.
T Consensus 462 ~~~l~~L--~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 462 LMYVKTL--ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp GGGCTTC--CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred HcCCCCc--eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 8888874 5899999999999999999999999999999999999999999999999999999998753
Q ss_pred cceeeCCCCcCcccCCHHHHhhhhcccccccCC-CcccccCccc-------------cc----------------cceEE
Q 045967 681 LRILDLSINNFSGYLPARFFEKLNAMRNVGADE-GKLRYLGEEY-------------YQ----------------DSVVV 730 (929)
Q Consensus 681 L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~-n~l~~l~~~~-------------~~----------------~~~~~ 730 (929)
|++||+++|+++|.+|..++... .+..+.+.. +.+.++.... +. +....
T Consensus 540 L~~L~Ls~N~l~g~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp CCEEECCSSEEESBCCGGGGTTT-TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCEEECCCCccCCcCChHHhccc-chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 88999999999999998765432 222222221 1111110000 00 00000
Q ss_pred EecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCch
Q 045967 731 TLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPK 810 (929)
Q Consensus 731 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~ 810 (929)
...|........++.|+.|||++|+++|.+|.+++++++|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|.
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 11111222233468899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCEEECccCcCccCCCCCCCCCccccccccCCcCCCCCCCCCCCCCCC
Q 045967 811 QLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSYIGNLGLCGFSLTKKYGNDE 865 (929)
Q Consensus 811 ~l~~L~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~Lcg~~l~~~c~~~~ 865 (929)
.+.++++|++||+++|+++|+||++++|.+++..+|.||++|||.|+. .|....
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred HHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 999999999999999999999999999999999999999999999987 896543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-63 Score=613.18 Aligned_cols=607 Identities=28% Similarity=0.363 Sum_probs=519.3
Q ss_pred CCCc-ccc-cCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCC---CCccccccccccc------ccc--cccccCCC
Q 045967 213 CSWD-GLT-CDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTV---VPDSLKNLSSSLT------FSE--LANSIGNL 279 (929)
Q Consensus 213 C~W~-Gv~-C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~---~p~~l~~l~~~L~------~g~--ip~~l~~l 279 (929)
-+|. +.. |.+.++.+. -.+|+.|+|+++.+.|. +|+.+.++ ..|+ .+. +|..++++
T Consensus 31 ~~W~~~~~~C~w~gv~C~----------~~~v~~L~L~~~~l~g~~~~l~~~l~~L-~~L~~l~~~~~~~~~l~~~~~~l 99 (768)
T 3rgz_A 31 PDWSSNKNPCTFDGVTCR----------DDKVTSIDLSSKPLNVGFSAVSSSLLSL-TGLESLFLSNSHINGSVSGFKCS 99 (768)
T ss_dssp TTCCTTSCGGGSTTEEEE----------TTEEEEEECTTSCCCEEHHHHHHHTTTC-TTCCEEECTTSCEEECCCCCCCC
T ss_pred cCCCCCCCCcCCcceEEC----------CCcEEEEECCCCCcCCccCccChhHhcc-CcccccCCcCCCcCCCchhhccC
Confidence 4695 444 666665443 25899999999999998 88888777 5555 233 44789999
Q ss_pred CCCcEEECCCCCCCCCCcc--ccCCCCCCCEEeccCccCCCCCcccc-CCCCCCCEEEccCCcCCCCCCC----CCCCCC
Q 045967 280 KLLGRLMLGYSQFVGPVPA--SLGNLTQLTLLHLMHNNFSSHIPSSL-SNLVQLTCLDLSGNSFVGEIPD----IVNLTQ 352 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~L~~L~~L~Ls~N~l~~~~p~----l~~L~~ 352 (929)
++|++|+|++|.++|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|++++|.+++..+. +.++++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 9999999999999998888 89999999999999999998888776 8999999999999999987775 688999
Q ss_pred CCEEeCCCCcCCCCCCCC----CcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCC
Q 045967 353 VSFFDLSNNQLAGPVPSH----EMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNR 426 (929)
Q Consensus 353 L~~L~Ls~n~l~~~~p~~----L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~ 426 (929)
|++|++++|.+++.+|.. |++|++++|.+++.+|. ++++++|++|++++|.+++.++.. .+++|++|++++|.
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc
Confidence 999999999999877654 99999999999998887 999999999999999999877654 78999999999999
Q ss_pred CCCCCccccccCCCCcEEeccCCCCcCccchhhhhc-cCcccEEEccCCCCCCCccccccC-CCCCcceeeccccCCC-C
Q 045967 427 LQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAK-LIKLKYLYISHNSLSLGTTFKIDI-PFPKFSYLSLFACNIS-A 503 (929)
Q Consensus 427 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l~-~ 503 (929)
+++.+|.. .+++|++|++++|++++.+| ..+.. +++|++|++++| .+.+.++..+ .+++|++|++++|.+. .
T Consensus 259 l~~~~~~~--~l~~L~~L~L~~n~l~~~ip-~~~~~~~~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGN--HFYGAVPPFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp CEESCCCC--CCTTCCEEECCSSEEEESCC-CCSCTTCTTCSEEECCSS--EEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred ccCccCcc--ccCCCCEEECcCCccCCccC-HHHHhhcCcCCEEECcCC--cCCCccchHHhcCCCccEEECCCCcccCc
Confidence 99888775 89999999999999998877 45544 599999999999 5556666666 7899999999999997 8
Q ss_pred CChh-hhcccccceeccCCCcCCCCCchhhhccCCC-CccEEecccccccccccCC-----CCCccEEEcCCCCCCCCCC
Q 045967 504 FPSF-LRTQDKLFYLDLSESKIDGQIPRWISKIGKD-SLSYLNLSHNFITKMKQIS-----WKNLGYLDLRSNLLQGPLP 576 (929)
Q Consensus 504 lp~~-l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~-~L~~L~Ls~N~l~~~~~~~-----~~~L~~L~Ls~N~l~~~~~ 576 (929)
+|.. +..+++|++|++++|.+.+.+|..+ ..++ +|++|++++|.+++..+.. +++|++|++++|.++
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~---- 407 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESL--TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT---- 407 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEEEECCCTTH--HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE----
T ss_pred CCHHHHhcCCCCCEEeCcCCccCccccHHH--HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc----
Confidence 8875 8999999999999999999999888 5565 8999999999999876522 578999999999998
Q ss_pred CCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCC
Q 045967 577 VPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDV 656 (929)
Q Consensus 577 ~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 656 (929)
+.+|..++++++|++|++++|++++.+|..++.++.+ +.|++++|.+.+.+|..+..+++|++|++++|++++.
T Consensus 408 ----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 408 ----GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL--RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp ----EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC--CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred ----cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCC--CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence 7888999999999999999999999999999999875 5999999999999999999999999999999999999
Q ss_pred CcccccCCCCCceeeccccccccc----------cceeeCCCCcCcccCCHHHHhhhhcccccccCCCccc-ccCccccc
Q 045967 657 FPYWLGNLPELRVLVLRSNKLRGS----------LRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLR-YLGEEYYQ 725 (929)
Q Consensus 657 ~p~~~~~l~~L~~L~Ls~N~l~~~----------L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~-~l~~~~~~ 725 (929)
+|.++.++++|++|++++|++++. |++|++++|+++|.+|.. +..+++|+.|++++|.+. .++...+.
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhc
Confidence 999999999999999999999853 999999999999999965 678999999999999876 44433221
Q ss_pred cc-----------eEE------------------EecCchhhHhhhcccccEeeccccccCcccchhhccccccceeecc
Q 045967 726 DS-----------VVV------------------TLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLT 776 (929)
Q Consensus 726 ~~-----------~~~------------------~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls 776 (929)
.. ... ...+........+..+..++++.|.++|.+|..++.+++|++|||+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 10 000 1111112222335667788899999999999999999999999999
Q ss_pred CccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCCCC-CCCccccccccCC
Q 045967 777 HNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQGP-QFNTIQEDSYIGN 849 (929)
Q Consensus 777 ~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~-~~~~~~~~~~~gn 849 (929)
+|+++|.+|..++++++|+.|+|++|+++|.+|..++++++|++||+++|+++|.||... .+..+....+.+|
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 999999999999999999999999999999999999999999999999999999999752 2333444444455
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-54 Score=528.15 Aligned_cols=562 Identities=22% Similarity=0.276 Sum_probs=343.8
Q ss_pred CCCcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCC
Q 045967 213 CSWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQF 292 (929)
Q Consensus 213 C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l 292 (929)
|.++.|.|....+. .+|+.+. +++++|+|++|.+++..+..|.++ ++|++|+|++|.+
T Consensus 4 ~~~~~~~cs~~~L~----~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l----------------~~L~~L~Ls~n~l 61 (680)
T 1ziw_A 4 VSHEVADCSHLKLT----QVPDDLP--TNITVLNLTHNQLRRLPAANFTRY----------------SQLTSLDVGFNTI 61 (680)
T ss_dssp CBSSEEECCSSCCS----SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGG----------------TTCSEEECCSSCC
T ss_pred eECCeeECCCCCcc----ccccccC--CCCcEEECCCCCCCCcCHHHHhCC----------------CcCcEEECCCCcc
Confidence 44555777654321 2333332 578999999998876555444444 4555555555555
Q ss_pred CCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCCC-
Q 045967 293 VGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPSH- 370 (929)
Q Consensus 293 ~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~- 370 (929)
++..|..|+++++|++|+|++|.+++..+..|+++++|++|++++|++++..|. ++++++|++|++++|.+++..|..
T Consensus 62 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 141 (680)
T 1ziw_A 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141 (680)
T ss_dssp CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS
T ss_pred CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh
Confidence 544444555555555555555555533333455555555555555555444333 445555555555555554443321
Q ss_pred -----CcEEEcCCCCCCCCCCcccc--CCCCCcEEEcccccCCCCCCCC--C---------------------------C
Q 045967 371 -----EMLIRLNNNSLSGTIPSWLF--SLPLLEYVRLSDNQLSGHIDEF--P---------------------------S 414 (929)
Q Consensus 371 -----L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~~~~--~---------------------------l 414 (929)
|++|++++|.+++..+..+. .+++|++|++++|.+++..+.. . .
T Consensus 142 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~ 221 (680)
T 1ziw_A 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221 (680)
T ss_dssp SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTT
T ss_pred cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhh
Confidence 45555555555544443332 3345555555555554433332 2 2
Q ss_pred CCCcEEEecCCCCCCCCccccccCCC--CcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccC-CCCCc
Q 045967 415 KSLQNIYLSNNRLQGSIPSSIFELVN--LIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKF 491 (929)
Q Consensus 415 ~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L 491 (929)
++|+.|++++|.+++..|..+.+++. |++|++++|++++..+ ..|..+++|++|++++| .+.+..+..+ .+++|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L 298 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSFAWLPQLEYFFLEYN--NIQHLFSHSLHGLFNV 298 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSC--CBSEECTTTTTTCTTC
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-ccccCcccccEeeCCCC--ccCccChhhhcCCCCc
Confidence 55666666666666666666665543 6666666666666544 55666666666666666 3333333333 55666
Q ss_pred ceeeccccCCC------CCCh----hhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccc--cCC--
Q 045967 492 SYLSLFACNIS------AFPS----FLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMK--QIS-- 557 (929)
Q Consensus 492 ~~L~L~~n~l~------~lp~----~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~--~~~-- 557 (929)
+.|++.+|... .+|. .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.... ...
T Consensus 299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~l~~~~f~ 376 (680)
T 1ziw_A 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF--TGLINLKYLSLSNSFTSLRTLTNETFV 376 (680)
T ss_dssp CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT--TTCTTCCEEECTTCBSCCCEECTTTTG
T ss_pred cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh--ccccCCcEEECCCCchhhhhcchhhhc
Confidence 66666655332 2332 45556666666666666666555555 55666666666666543221 111
Q ss_pred ---CCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCc-cccccCcccccceeeccCcccCCCC
Q 045967 558 ---WKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIP-ECIGNFSPWLSVSLNLNNNELEGAN 633 (929)
Q Consensus 558 ---~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~ll~~~L~Ls~N~l~~~~ 633 (929)
.++|+.|++++|+++ +..|..+..+++|++|++++|++++.+| ..+..++.+ +.+++++|.+.+..
T Consensus 377 ~~~~~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L--~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 377 SLAHSPLHILNLTKNKIS--------KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI--FEIYLSYNKYLQLT 446 (680)
T ss_dssp GGTTSCCCEEECTTSCCC--------EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTC--CEEECCSCSEEECC
T ss_pred ccccCcCceEECCCCCCC--------eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccc--cEEecCCCCcceeC
Confidence 135666666666665 4444555666666666666666665544 344555542 35666666666665
Q ss_pred cccccCCCCCcEEEccCCcCC--CCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhccccccc
Q 045967 634 PQSLVNCTKLEVLDIGNNKIN--DVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGA 711 (929)
Q Consensus 634 p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~l 711 (929)
+..+..+++|+.|++++|.++ +.+|..+..+++|++|++++| +++ .+|...|..+++|+.|++
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N--------------~l~-~i~~~~~~~l~~L~~L~L 511 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN--------------NIA-NINDDMLEGLEKLEILDL 511 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS--------------CCC-CCCTTTTTTCTTCCEEEC
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC--------------CCC-cCChhhhccccccCEEeC
Confidence 666666666666666666654 345555666666665555554 444 466667788899999999
Q ss_pred CCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCc
Q 045967 712 DEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNL 791 (929)
Q Consensus 712 s~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L 791 (929)
++|.+..+....+.. ........+++|+.|+|++|+++...+..|+++++|++|+|++|++++..+..|.++
T Consensus 512 s~N~l~~~~~~~~~~--------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 512 QHNNLARLWKHANPG--------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp CSSCCGGGGSTTSTT--------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCccccchhhccC--------CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence 999887654321110 011122347899999999999996555679999999999999999998777888999
Q ss_pred CCCCEeeCCCCcCCCCCchhhc-cCCCCCEEECccCcCccCCCC
Q 045967 792 AKLESLDLSSNNLAGKIPKQLA-SLTSLSVLNISHNRLDGPIPQ 834 (929)
Q Consensus 792 ~~L~~LdLs~N~ls~~ip~~l~-~L~~L~~L~Ls~N~l~g~iP~ 834 (929)
++|+.|+|++|++++..|..+. .+++|+.|++++|++.+.++.
T Consensus 584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999999999888888 789999999999999999885
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-52 Score=510.22 Aligned_cols=565 Identities=21% Similarity=0.218 Sum_probs=467.1
Q ss_pred eEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCcc
Q 045967 243 QVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPS 322 (929)
Q Consensus 243 ~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~ 322 (929)
+.++.++++++ .+|..+. +++++|+|++|.+++..+..|+++++|++|+|++|.+++..|.
T Consensus 7 ~~~~cs~~~L~-----------------~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 67 (680)
T 1ziw_A 7 EVADCSHLKLT-----------------QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67 (680)
T ss_dssp SEEECCSSCCS-----------------SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT
T ss_pred CeeECCCCCcc-----------------ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHH
Confidence 46788887763 3444443 7899999999999997778899999999999999999999999
Q ss_pred ccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCCC------CcEEEcCCCCCCCCCCccccCCCCC
Q 045967 323 SLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPSH------EMLIRLNNNSLSGTIPSWLFSLPLL 395 (929)
Q Consensus 323 ~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~------L~~L~Ls~N~l~~~~p~~l~~l~~L 395 (929)
.++++++|++|++++|.+++..+. ++++++|++|++++|.+++..|.. |++|++++|.+++..|..++++++|
T Consensus 68 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 68 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147 (680)
T ss_dssp HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTC
T ss_pred HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccC
Confidence 999999999999999999977665 999999999999999998766543 9999999999999999999999999
Q ss_pred cEEEcccccCCCCCCCC----CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhh---hccCcccE
Q 045967 396 EYVRLSDNQLSGHIDEF----PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMF---AKLIKLKY 468 (929)
Q Consensus 396 ~~L~Ls~N~l~~~~~~~----~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~---~~l~~L~~ 468 (929)
++|++++|.+++..+.. .+++|++|++++|.+++..|..+..+++|+.|++.++.+.+... ..+ ...++|+.
T Consensus 148 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT-EKLCLELANTSIRN 226 (680)
T ss_dssp CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH-HHHHHHHTTSCCCE
T ss_pred CEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH-HHHHHHhhhccccE
Confidence 99999999998766542 56899999999999999999999999999999999998764322 111 13478999
Q ss_pred EEccCCCCCCCccccccC-CC--CCcceeeccccCCCCC-ChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEe
Q 045967 469 LYISHNSLSLGTTFKIDI-PF--PKFSYLSLFACNISAF-PSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLN 544 (929)
Q Consensus 469 L~Ls~N~l~~~~~~~~~~-~~--~~L~~L~L~~n~l~~l-p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~ 544 (929)
|++++| .+.+..+..+ .+ ++|+.|++++|.++.+ |..+..+++|++|++++|.+.+..|..+ ..+++|+.|+
T Consensus 227 L~L~~n--~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 302 (680)
T 1ziw_A 227 LSLSNS--QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL--HGLFNVRYLN 302 (680)
T ss_dssp EECTTS--CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT--TTCTTCCEEE
T ss_pred EEccCC--cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh--cCCCCccEEe
Confidence 999999 4445444444 33 4599999999999855 4678999999999999999999888888 7889999999
Q ss_pred ccccccccc------------ccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCc--cc
Q 045967 545 LSHNFITKM------------KQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIP--EC 610 (929)
Q Consensus 545 Ls~N~l~~~------------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip--~~ 610 (929)
+++|...+. ....+++|++|++++|.++ +..+..+.++++|++|++++|.+.+... ..
T Consensus 303 L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~ 374 (680)
T 1ziw_A 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP--------GIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374 (680)
T ss_dssp CTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC--------CCCTTTTTTCTTCCEEECTTCBSCCCEECTTT
T ss_pred ccchhhhcccccccccccChhhcccCCCCCEEECCCCccC--------CCChhHhccccCCcEEECCCCchhhhhcchhh
Confidence 998755431 1145689999999999998 5556678899999999999998653322 12
Q ss_pred cccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCc-ccccCCCCCceeecccccccc----------
Q 045967 611 IGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFP-YWLGNLPELRVLVLRSNKLRG---------- 679 (929)
Q Consensus 611 l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~---------- 679 (929)
+..+.....+.+++++|.+++..|..+..+++|++|++++|.+++.+| ..+.++++|++|++++|++++
T Consensus 375 f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 454 (680)
T 1ziw_A 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454 (680)
T ss_dssp TGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT
T ss_pred hcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc
Confidence 222211112589999999999999999999999999999999987655 688999999999999999764
Q ss_pred ccceeeCCCCcCc--ccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccC
Q 045967 680 SLRILDLSINNFS--GYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFD 757 (929)
Q Consensus 680 ~L~~LdLs~N~l~--g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 757 (929)
.|+.|++++|.++ +.+|. .+..+++|+.|++++|.+..++...+.. +++|+.|++++|+++
T Consensus 455 ~L~~L~l~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~----------------l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 455 SLQRLMLRRVALKNVDSSPS-PFQPLRNLTILDLSNNNIANINDDMLEG----------------LEKLEILDLQHNNLA 517 (680)
T ss_dssp TCCEEECTTSCCBCTTCSSC-TTTTCTTCCEEECCSSCCCCCCTTTTTT----------------CTTCCEEECCSSCCG
T ss_pred ccccchhccccccccccCCc-ccccCCCCCEEECCCCCCCcCChhhhcc----------------ccccCEEeCCCCCcc
Confidence 3999999999987 45563 4688999999999999988776544332 789999999999998
Q ss_pred cccc--------hhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCc
Q 045967 758 GEIS--------QVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLD 829 (929)
Q Consensus 758 ~~ip--------~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~ 829 (929)
+..+ ..++++++|++|+|++|+++...+..|+++++|+.|||++|++++..+..|.++++|+.|++++|+++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 6532 24789999999999999999555567999999999999999999887888899999999999999999
Q ss_pred cCCCCCC--CCCccccccccCCcCCCCCC
Q 045967 830 GPIPQGP--QFNTIQEDSYIGNLGLCGFS 856 (929)
Q Consensus 830 g~iP~~~--~~~~~~~~~~~gn~~Lcg~~ 856 (929)
+..|... .+..+....+.|||..|+.+
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ccChhHhcccccccCEEEccCCCcccCCc
Confidence 8766432 34566677788999888754
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-51 Score=511.72 Aligned_cols=516 Identities=22% Similarity=0.202 Sum_probs=316.0
Q ss_pred ccCCCCCCcEEECCCCCCCCCC-ccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC---CCCC
Q 045967 275 SIGNLKLLGRLMLGYSQFVGPV-PASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD---IVNL 350 (929)
Q Consensus 275 ~l~~l~~L~~L~Ls~n~l~~~l-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~---l~~L 350 (929)
.+.++++|++|+|++|...+.+ |..|+++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++.++. +.++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 3444455555555555444333 44555555555555555555555555555555555555555555543332 4555
Q ss_pred CCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CC--CCCcEEEecCCC
Q 045967 351 TQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PS--KSLQNIYLSNNR 426 (929)
Q Consensus 351 ~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l--~~L~~L~Ls~N~ 426 (929)
++|++|++++|.+++. ..+..++++++|++|++++|.+++..+.. .+ ++|+.|++++|.
T Consensus 123 ~~L~~L~Ls~N~l~~~-----------------~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSL-----------------YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp SSCCEEEEESCCCCCC-----------------CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCCCEEECCCCccccc-----------------ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 5555555555554421 12245666777777777777766554443 22 566777777777
Q ss_pred CCCCCccccccCCC------CcEEeccCCCCcCccchhhhhc---cCcccEEEccCCCCCCCccccccCCCCCcceeecc
Q 045967 427 LQGSIPSSIFELVN------LIDLQLDSNNFSGIAEPYMFAK---LIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLF 497 (929)
Q Consensus 427 l~~~~p~~l~~l~~------L~~L~Ls~N~l~~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~ 497 (929)
+.+..|..+..+.+ |+.|++++|.+++..+ ..+.. ..+++.+.++.+.+. .. ..
T Consensus 186 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~l~~~~l~~L~l~~~~~~--~~--------------~~ 248 (844)
T 3j0a_A 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT-GNFSNAISKSQAFSLILAHHIMG--AG--------------FG 248 (844)
T ss_dssp SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT-SGGGGTSCSCCBSEEECCSSCCB--CS--------------SS
T ss_pred cccccccchhhcCCccccCceeEEecCCCcCchhHH-HHHHhhcCcccccceeccccccc--cc--------------cc
Confidence 66666665555544 6667777666665544 22322 234555555543211 00 00
Q ss_pred ccCCCCC-Chhhhc--ccccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc---CCCCCccEEEcCCCCC
Q 045967 498 ACNISAF-PSFLRT--QDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLL 571 (929)
Q Consensus 498 ~n~l~~l-p~~l~~--~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~Ls~N~l 571 (929)
.+++... +..+.. .++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+++..+ ..+++|++|++++|.+
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 1111111 112222 3678888888888887777777 677888888888888887765 3456788888888887
Q ss_pred CCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCC
Q 045967 572 QGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNN 651 (929)
Q Consensus 572 ~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 651 (929)
+ +..+..+..+++|++|++++|++.+..+..+..++.+ +.|++++|.+++. ..+++|+.|++++|
T Consensus 327 ~--------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 327 G--------ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL--QTLDLRDNALTTI-----HFIPSIPDIFLSGN 391 (844)
T ss_dssp S--------CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC--CEEEEETCCSCCC-----SSCCSCSEEEEESC
T ss_pred C--------ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC--CEEECCCCCCCcc-----cCCCCcchhccCCC
Confidence 6 4445667777788888888888876666667666663 4788888877654 22677788888888
Q ss_pred cCCCCCcccccCCCCCceeecccccccc-----------ccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccC
Q 045967 652 KINDVFPYWLGNLPELRVLVLRSNKLRG-----------SLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLG 720 (929)
Q Consensus 652 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-----------~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~ 720 (929)
+++.. |.. ..+++.|++++|++++ .|+.|++++|++++..+...+..+++|+.|++++|.+....
T Consensus 392 ~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 467 (844)
T 3j0a_A 392 KLVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467 (844)
T ss_dssp CCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSC
T ss_pred Ccccc-ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccc
Confidence 77744 332 4567777777777764 27777777777775544444455677777777777765332
Q ss_pred ccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCC
Q 045967 721 EEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLS 800 (929)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs 800 (929)
.... .......+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..+. ++|+.|||+
T Consensus 468 ~~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls 534 (844)
T 3j0a_A 468 ETEL-----------CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDIS 534 (844)
T ss_dssp CSCC-----------CSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEE
T ss_pred cccc-----------chhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECC
Confidence 1100 001112256777788888888777777777778888888888888766666554 778888888
Q ss_pred CCcCCCCCchhhccCCCCCEEECccCcCccCCCCCCCCCccccccccCCcCCCCCCCCCCCCCCC
Q 045967 801 SNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSYIGNLGLCGFSLTKKYGNDE 865 (929)
Q Consensus 801 ~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~Lcg~~l~~~c~~~~ 865 (929)
+|++++.+|..|. +|+.|++++|++.|.++.. .|......++..+||.+....|..+.
T Consensus 535 ~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 535 RNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp EECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred CCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccCCch
Confidence 8888877776553 5777788888877777642 22222234555666766667786543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.1e-51 Score=490.34 Aligned_cols=529 Identities=19% Similarity=0.168 Sum_probs=390.9
Q ss_pred CcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCC
Q 045967 215 WDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVG 294 (929)
Q Consensus 215 W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~ 294 (929)
+.-|.|...++. .+|..+. .++++|+|++|.+++.. |..++++++|++|+|++|.+.+
T Consensus 14 ~~~~~c~~~~l~----~iP~~l~--~~l~~L~Ls~n~i~~~~----------------~~~~~~l~~L~~L~Ls~n~i~~ 71 (606)
T 3t6q_A 14 NKTYNCENLGLN----EIPGTLP--NSTECLEFSFNVLPTIQ----------------NTTFSRLINLTFLDLTRCQIYW 71 (606)
T ss_dssp TTEEECTTSCCS----SCCTTSC--TTCCEEECTTCCCSEEC----------------TTTSTTCTTCSEEECTTCCCCE
T ss_pred CceEECCCCCcc----cCcCCCC--CcCcEEEccCCccCcCC----------------hhHhccCccceEEECCCCccce
Confidence 345778755432 2344333 37899999999985443 4567788999999999999999
Q ss_pred CCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCC-CCC---
Q 045967 295 PVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGP-VPS--- 369 (929)
Q Consensus 295 ~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~-~p~--- 369 (929)
..|..|+++++|++|+|++|++++..|..|+++++|++|++++|.+++..+. ++++++|++|++++|.+++. .|.
T Consensus 72 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (606)
T 3t6q_A 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCC
T ss_pred eChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccC
Confidence 8899999999999999999999988899999999999999999999986554 89999999999999999873 333
Q ss_pred --CCcEEEcCCCCCCCCCCccccCCCCCc--EEEcccccCCCCCCCC-CCCCCcEEEecCCCCCCCCccccccCCCCcEE
Q 045967 370 --HEMLIRLNNNSLSGTIPSWLFSLPLLE--YVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDL 444 (929)
Q Consensus 370 --~L~~L~Ls~N~l~~~~p~~l~~l~~L~--~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 444 (929)
.|+.|++++|.+++..|..++.+++|+ +|++++|.+++..+.. ...+|+.|++++|. .++..+..+.++...
T Consensus 152 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~ 228 (606)
T 3t6q_A 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQ 228 (606)
T ss_dssp CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEEE
T ss_pred CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhhhccccchh
Confidence 278888888888877777788888888 7888888887766655 55678888888775 344455555554443
Q ss_pred eccCCCCcC----ccchhhhhccC--cccEEEccCCCCCCCccccccC-CCCCcceeeccccCCCCCChhhhccccccee
Q 045967 445 QLDSNNFSG----IAEPYMFAKLI--KLKYLYISHNSLSLGTTFKIDI-PFPKFSYLSLFACNISAFPSFLRTQDKLFYL 517 (929)
Q Consensus 445 ~Ls~N~l~~----~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L 517 (929)
.+..+.+.+ .+++..+..+. +|+.|++++|.+ .+..+..+ .+++|++|++++|.++.+|..+..+++|++|
T Consensus 229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L 306 (606)
T 3t6q_A 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF--FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKL 306 (606)
T ss_dssp EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC--SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEE
T ss_pred heechhhccccccccChhHhchhhcCceeEEEeecCcc--CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEE
Confidence 333222221 11123444443 677777777743 33333323 5677777777777777777777777777777
Q ss_pred ccCCCcCCCCCchhhhccCCCCccEEeccccccccccc----CCCCCccEEEcCCCCCCCCCCCCCCccc--chhhhccC
Q 045967 518 DLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ----ISWKNLGYLDLRSNLLQGPLPVPPSREI--IHSICDII 591 (929)
Q Consensus 518 ~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~----~~~~~L~~L~Ls~N~l~~~~~~~~~~~~--p~~l~~l~ 591 (929)
++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+++|++|++++|.++ +.. +..+..++
T Consensus 307 ~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~~~l~ 376 (606)
T 3t6q_A 307 VLSANKFENLCQISA--SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE--------TSDCCNLQLRNLS 376 (606)
T ss_dssp ECTTCCCSBGGGGCG--GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC--------EEEESTTTTTTCT
T ss_pred ECccCCcCcCchhhh--hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc--------cccCcchhcccCC
Confidence 777777776666666 666777777777777664433 34567777777777776 322 45666777
Q ss_pred CCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcc-cccCCCCCcEEEccCCcCCCCCcccccCCCCCcee
Q 045967 592 ALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQ-SLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVL 670 (929)
Q Consensus 592 ~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 670 (929)
+|++|++++|++++..|..+..++.+ +.|++++|.+.+..+. .+.++++|++|++++|.+++..|..+..+++|++|
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQL--ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTC--SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccC--CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 77777777777776666666666653 4677777777766543 36777777777777777777767777777777766
Q ss_pred eccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEee
Q 045967 671 VLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTID 750 (929)
Q Consensus 671 ~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 750 (929)
++++|++++. .++.. .....+++|+.|+
T Consensus 455 ~L~~n~l~~~-------------~~~~~---------------------------------------~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 455 NLQGNHFPKG-------------NIQKT---------------------------------------NSLQTLGRLEILV 482 (606)
T ss_dssp ECTTCBCGGG-------------EECSS---------------------------------------CGGGGCTTCCEEE
T ss_pred ECCCCCCCcc-------------ccccc---------------------------------------hhhccCCCccEEE
Confidence 6666655410 01100 0011267899999
Q ss_pred ccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCcc
Q 045967 751 FSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDG 830 (929)
Q Consensus 751 Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g 830 (929)
+++|++++..|..|+++++|++|+|++|++++.+|..+.+++.| .|+|++|++++.+|..+..+++|+.|++++|++.|
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCC
Q 045967 831 PIPQG 835 (929)
Q Consensus 831 ~iP~~ 835 (929)
.++..
T Consensus 562 ~c~~~ 566 (606)
T 3t6q_A 562 TCSNI 566 (606)
T ss_dssp SGGGH
T ss_pred cCCcH
Confidence 88743
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.6e-50 Score=481.85 Aligned_cols=529 Identities=18% Similarity=0.139 Sum_probs=325.2
Q ss_pred ccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCC
Q 045967 217 GLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPV 296 (929)
Q Consensus 217 Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~l 296 (929)
.|.|...++. .+|..+. +++++|+|++|.+++.. +..+.++++|++|++++|.+++..
T Consensus 15 ~~~c~~~~l~----~ip~~~~--~~l~~L~Ls~n~l~~~~----------------~~~~~~l~~L~~L~Ls~n~l~~i~ 72 (606)
T 3vq2_A 15 TYQCMDQKLS----KVPDDIP--SSTKNIDLSFNPLKILK----------------SYSFSNFSELQWLDLSRCEIETIE 72 (606)
T ss_dssp EEECTTSCCS----SCCTTSC--TTCCEEECTTSCCCEEC----------------TTTTTTCTTCCEEECTTCCCCEEC
T ss_pred ceEccCCCcc----cCCCCCC--CCcCEEECCCCCcCEeC----------------hhhccCCccCcEEeCCCCcccccC
Confidence 5667654321 2333332 68999999999885433 345777899999999999999888
Q ss_pred ccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCCCCcEEE
Q 045967 297 PASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPSHEMLIR 375 (929)
Q Consensus 297 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~ 375 (929)
|..|+++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+. ++++++|++|++++|.+++.
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------- 143 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC--------- 143 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC---------
T ss_pred HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccce---------
Confidence 88999999999999999999988899999999999999999999877755 89999999999999988741
Q ss_pred cCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCC----CcEEEecCCCCCCCCccccccCCCCcEEeccCC
Q 045967 376 LNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKS----LQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSN 449 (929)
Q Consensus 376 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~----L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 449 (929)
.+|..++++++|++|++++|++++..+.. .+++ +++|++++|.+++..+..+ ...+|+.|++++|
T Consensus 144 --------~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n 214 (606)
T 3vq2_A 144 --------KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-QGIKLHELTLRGN 214 (606)
T ss_dssp --------CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESC
T ss_pred --------echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccc-cCceeeeeeccCC
Confidence 34556666666666666666666544432 1222 3466666666653333333 3336666666666
Q ss_pred CCcCccchhhhhccCcccEEEccCCCCCCCccccc-------cCCCCCcceeec-cccCCC-CCChhhhcccccceeccC
Q 045967 450 NFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKI-------DIPFPKFSYLSL-FACNIS-AFPSFLRTQDKLFYLDLS 520 (929)
Q Consensus 450 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------~~~~~~L~~L~L-~~n~l~-~lp~~l~~~~~L~~L~Ls 520 (929)
.+.+...+..+.++++|+.+++..+.+.....+.. ....-.++.+.+ ..+.+. .+|. +..+++|+.|+++
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLA 293 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEE
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEec
Confidence 66543334556666666666554432211111100 000012223333 222333 2222 4444555555555
Q ss_pred CCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCC
Q 045967 521 ESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSN 600 (929)
Q Consensus 521 ~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~ 600 (929)
+|.+.. +| .+ ..+++|++|++++|.+..++...+++|+.|++++|... +.+ .+..+++|++|++++
T Consensus 294 ~~~~~~-l~-~l--~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~--------~~~--~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 294 GVSIKY-LE-DV--PKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--------ISF--KKVALPSLSYLDLSR 359 (606)
T ss_dssp SCCCCC-CC-CC--CTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSC--------EEC--CCCCCTTCCEEECCS
T ss_pred Cccchh-hh-hc--cccccCCEEEcccccCcccccCCCCccceeeccCCcCc--------cch--hhccCCCCCEEECcC
Confidence 555432 22 23 34445555555555553333234444555555555332 111 233444555555555
Q ss_pred CcCcCC--CccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCc-ccccCCCCCceeecccccc
Q 045967 601 NRLSGT--IPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFP-YWLGNLPELRVLVLRSNKL 677 (929)
Q Consensus 601 N~l~~~--ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l 677 (929)
|++++. +|..+..++.+ +.|++++|.+.+. |..+.++++|++|++++|++.+..| ..+..+++|++|++++|++
T Consensus 360 n~l~~~~~~~~~~~~~~~L--~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSL--RHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp SCEEEEEECCHHHHCCSCC--CEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred CccCCCcchhhhhccCCcc--cEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 554433 24444444432 3455555554442 2444555555555555555555444 3444555555444444433
Q ss_pred ccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccc-cCccccccceEEEecCchhhHhhhcccccEeecccccc
Q 045967 678 RGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRY-LGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGF 756 (929)
Q Consensus 678 ~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 756 (929)
+ +..| ..+..+++|+.|++++|.+.. .....+ ..+++|+.|++++|++
T Consensus 437 ~--------------~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 437 K--------------IDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVF----------------ANTTNLTFLDLSKCQL 485 (606)
T ss_dssp E--------------ECCT-TTTTTCTTCCEEECTTCEEGGGEECSCC----------------TTCTTCCEEECTTSCC
T ss_pred C--------------ccch-hhhcCCCCCCEEECCCCcCCCcchHHhh----------------ccCCCCCEEECCCCcC
Confidence 3 1111 223334444444444443322 000001 1267899999999999
Q ss_pred CcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCC-CCCEEECccCcCccCCCCC
Q 045967 757 DGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLT-SLSVLNISHNRLDGPIPQG 835 (929)
Q Consensus 757 ~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~-~L~~L~Ls~N~l~g~iP~~ 835 (929)
++..|..++++++|++|+|++|++++.+|..++++++|++|||++|+++ .+|..+..++ +|++|++++|++.+.+|..
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999999999999999999999999999999999999999999999 6788899997 6999999999999988753
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-49 Score=477.77 Aligned_cols=516 Identities=16% Similarity=0.179 Sum_probs=394.9
Q ss_pred cccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCC
Q 045967 272 LANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNL 350 (929)
Q Consensus 272 ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L 350 (929)
+|..+. +++++|+|++|.+++..|..|+++++|++|+|++|++.+..|..|+++++|++|++++|.+++..|. ++++
T Consensus 27 iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 27 IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 344443 3789999999999998899999999999999999999998899999999999999999999988776 8999
Q ss_pred CCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCC-CCCC-CCCCCcEEEecCCCCC
Q 045967 351 TQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGH-IDEF-PSKSLQNIYLSNNRLQ 428 (929)
Q Consensus 351 ~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~-~l~~L~~L~Ls~N~l~ 428 (929)
++|++|++++|.+++. .|..++++++|++|++++|++++. .+.. .+++|++|++++|.++
T Consensus 105 ~~L~~L~L~~n~i~~l------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 105 KALKHLFFIQTGISSI------------------DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp TTCCEEECTTSCCSCG------------------GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred ccccEeeccccCcccC------------------CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 9999999999988742 245578889999999999998874 3433 6788999999999998
Q ss_pred CCCccccccCCCCc--EEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccC---CCC
Q 045967 429 GSIPSSIFELVNLI--DLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACN---ISA 503 (929)
Q Consensus 429 ~~~p~~l~~l~~L~--~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~---l~~ 503 (929)
+..|..+..+++|+ .|++++|.+.+..+ ..+. ..+|+.|++++|. .............++.+.+.... ...
T Consensus 167 ~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~-~~~~-~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEP-GAFD-SAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp EECHHHHHTTTTCCSEEEECTTCCCCEECT-TTTT-TCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred ccChhhhhhhcccceeEEecCCCccCccCh-hHhh-hccccccccCCch--hHHHHhhhccccchhheechhhccccccc
Confidence 77788888888888 88999999988765 4443 4688999998883 11111111111222233322211 112
Q ss_pred CC-hhhhccc--ccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc--CCCCCccEEEcCCCCCCCCCCCC
Q 045967 504 FP-SFLRTQD--KLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLPVP 578 (929)
Q Consensus 504 lp-~~l~~~~--~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~--~~~~~L~~L~Ls~N~l~~~~~~~ 578 (929)
++ ..+..+. +|+.|++++|.+.+..+..+ ..+++|++|++++|.++.++. ..+++|++|++++|.++
T Consensus 243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~------ 314 (606)
T 3t6q_A 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTF--HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE------ 314 (606)
T ss_dssp CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT--TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCS------
T ss_pred cChhHhchhhcCceeEEEeecCccCccCHHHh--ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcC------
Confidence 22 2233332 67888888888887777767 677888888888888876654 45678888888888887
Q ss_pred CCcccchhhhccCCCCEEeCCCCcCcCCCccc-cccCcccccceeeccCcccCCCC--cccccCCCCCcEEEccCCcCCC
Q 045967 579 PSREIIHSICDIIALDVLDLSNNRLSGTIPEC-IGNFSPWLSVSLNLNNNELEGAN--PQSLVNCTKLEVLDIGNNKIND 655 (929)
Q Consensus 579 ~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~ll~~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~ 655 (929)
+..|..+..+++|++|++++|.+.+.+|.. +..++.+ +.|++++|.+.+.. +..+.++++|++|++++|++.+
T Consensus 315 --~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 315 --NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL--RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp --BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC--CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred --cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC--CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence 555667778888888888888887666654 6666653 47888888887765 6677888888888888888887
Q ss_pred CCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCc
Q 045967 656 VFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGT 735 (929)
Q Consensus 656 ~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~ 735 (929)
..|..+..+++|+.|++++|+++ +..|...+..+++|+.|++++|.+.......+.
T Consensus 391 ~~~~~~~~l~~L~~L~l~~n~l~--------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------- 446 (606)
T 3t6q_A 391 LKTEAFKECPQLELLDLAFTRLK--------------VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD---------- 446 (606)
T ss_dssp ECTTTTTTCTTCSEEECTTCCEE--------------CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT----------
T ss_pred CCHHHhcCCccCCeEECCCCcCC--------------CcccchhhhCcccCCEEECCCCccCCcCHHHHh----------
Confidence 77778888888877766666554 344445566777788888888776554433222
Q ss_pred hhhHhhhcccccEeeccccccCcc---cchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhh
Q 045967 736 EIELQKILTVFTTIDFSSNGFDGE---ISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQL 812 (929)
Q Consensus 736 ~~~~~~~l~~L~~LdLs~N~l~~~---ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l 812 (929)
.+++|+.|++++|++++. .+..++.+++|++|+|++|++++.+|..|+++++|+.|+|++|++++.+|..+
T Consensus 447 ------~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 447 ------GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp ------TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred ------CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh
Confidence 278999999999999873 23679999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCEEECccCcCccCCCCC-CCCCccccccccCCcCCCC
Q 045967 813 ASLTSLSVLNISHNRLDGPIPQG-PQFNTIQEDSYIGNLGLCG 854 (929)
Q Consensus 813 ~~L~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~Lcg 854 (929)
.+++.| +|++++|++++..|.. ..+..+....+.||+..|.
T Consensus 521 ~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 521 SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred Cccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 999999 9999999999877753 2344556667778877664
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.4e-51 Score=492.25 Aligned_cols=503 Identities=19% Similarity=0.253 Sum_probs=314.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccccccccCCCCCCCCCCCC---cccccCCCCcccccCchhhhhcCCCCceEEEcCC
Q 045967 173 HEQSSALIQFKQLFSFDGDSSFVCQHSYPKMISWKKDTNYCSW---DGLTCDMATVSLETPVFQALVQNMTKLQVLSLAS 249 (929)
Q Consensus 173 ~~e~~aLl~~k~~l~~~~~~~~~~~~~~~~l~sW~~~~~~C~W---~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 249 (929)
..|+.||.+||+++..+... +..+.++...+|+.+.+||.| .||+|+..+ +|+.|+|++
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~--~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~----------------~V~~L~L~~ 90 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWS--QQGFGTQPGANWNFNKELDMWGAQPGVSLNSNG----------------RVTGLSLEG 90 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCC--CCC------CCCCCSSCGGGTTCCTTEEECTTC----------------CEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCCCcc--cCCcCCccCCCCCCCCCcccccCCCCeEEcCCC----------------CEEEEEecC
Confidence 46999999999998755321 111234567799988999999 999998643 799999999
Q ss_pred CCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCC------CC------CCccccCCCCCCCEEeccCccCC
Q 045967 250 LEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQF------VG------PVPASLGNLTQLTLLHLMHNNFS 317 (929)
Q Consensus 250 ~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l------~~------~lp~~~~~l~~L~~L~Ls~n~l~ 317 (929)
+++ .|.+|++++++++|++|+|++|.+ .+ .+|... +..|+ +++++|.+.
T Consensus 91 ~~l----------------~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~ 151 (636)
T 4eco_A 91 FGA----------------SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVD 151 (636)
T ss_dssp SCC----------------EEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTC
T ss_pred ccc----------------CCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhc
Confidence 988 456677788889999999999976 22 344333 45566 777777777
Q ss_pred CCCccccCCC-CCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCc
Q 045967 318 SHIPSSLSNL-VQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLE 396 (929)
Q Consensus 318 ~~~p~~l~~L-~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 396 (929)
+.+|..+..+ ..+..+++....+.. .....++.+.+ ....|+++| +|..++++++|+
T Consensus 152 ~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~l~~l~l----------------~~~~n~l~~-ip~~l~~l~~L~ 209 (636)
T 4eco_A 152 YDPREDFSDLIKDCINSDPQQKSIKK-----SSRITLKDTQI----------------GQLSNNITF-VSKAVMRLTKLR 209 (636)
T ss_dssp CCGGGGSCHHHHHHHHHCTTSCCCCC-----CCCCCCCTTTT----------------TCCSCEEEE-ECGGGGGCTTCC
T ss_pred cCchhhHHHHHHHHhhcCcccccccc-----ccccchhhhhh----------------ccccCCCcc-CCHHHhcccCCC
Confidence 7666655421 122222222211110 00111111111 122467777 889999999999
Q ss_pred EEEcccccCCCC-----------------CCCC----CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCC-CcC-
Q 045967 397 YVRLSDNQLSGH-----------------IDEF----PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNN-FSG- 453 (929)
Q Consensus 397 ~L~Ls~N~l~~~-----------------~~~~----~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~- 453 (929)
+|+|++|.+++. +|.. .+++|++|++++|++.+.+|..++++++|++|++++|+ +++
T Consensus 210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~ 289 (636)
T 4eco_A 210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289 (636)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc
Confidence 999999999984 5544 47888888888888888888888888888888888887 877
Q ss_pred ccchhhhhcc------CcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCCh--hhhcccccceeccCCCcCC
Q 045967 454 IAEPYMFAKL------IKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPS--FLRTQDKLFYLDLSESKID 525 (929)
Q Consensus 454 ~~~~~~~~~l------~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~--~l~~~~~L~~L~Ls~N~l~ 525 (929)
.+| ..++.+ ++|++|++++|++ +.+|. .++.+++|++|++++|.+.
T Consensus 290 ~lp-~~~~~L~~~~~l~~L~~L~L~~n~l-------------------------~~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 290 QLK-DDWQALADAPVGEKIQIIYIGYNNL-------------------------KTFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp HHH-HHHHHHHHSGGGGTCCEEECCSSCC-------------------------SSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred cch-HHHHhhhccccCCCCCEEECCCCcC-------------------------CccCchhhhccCCCCCEEeCcCCcCc
Confidence 555 566665 6777777776643 34566 6777777777777777777
Q ss_pred CCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCC-CCEEeCCCCcCc
Q 045967 526 GQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIA-LDVLDLSNNRLS 604 (929)
Q Consensus 526 ~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~-L~~L~Ls~N~l~ 604 (929)
|.+| .+ ..+++|++|++++|.++. +|..+..+++ |++|++++|+++
T Consensus 344 g~ip-~~--~~l~~L~~L~L~~N~l~~------------------------------lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 344 GKLP-AF--GSEIKLASLNLAYNQITE------------------------------IPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp EECC-CC--EEEEEESEEECCSSEEEE------------------------------CCTTSEEECTTCCEEECCSSCCS
T ss_pred cchh-hh--CCCCCCCEEECCCCcccc------------------------------ccHhhhhhcccCcEEEccCCcCc
Confidence 6666 55 455556555555555542 3333444444 555555555554
Q ss_pred CCCccccccCc--ccccceeeccCcccCCCCccccc-------CCCCCcEEEccCCcCCCCCcccccCCCCCceeecccc
Q 045967 605 GTIPECIGNFS--PWLSVSLNLNNNELEGANPQSLV-------NCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSN 675 (929)
Q Consensus 605 ~~ip~~l~~l~--~ll~~~L~Ls~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 675 (929)
.+|..+.... .+ +.|++++|.+.+.+|..+. .+++|++|++++|++++..+..+..+++|++|+|++|
T Consensus 391 -~lp~~~~~~~l~~L--~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 391 -YIPNIFDAKSVSVM--SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp -SCCSCCCTTCSSCE--EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred -ccchhhhhcccCcc--CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 4444433322 21 3455555555554444444 4455666666666665443333444555555555444
Q ss_pred ccccccceeeCCCCcCcccCCHHHHhh-------hhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccE
Q 045967 676 KLRGSLRILDLSINNFSGYLPARFFEK-------LNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTT 748 (929)
Q Consensus 676 ~l~~~L~~LdLs~N~l~g~ip~~~~~~-------l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 748 (929)
+++ .+|...+.. +++|+.|++++|.+..++...+. ..+++|+.
T Consensus 468 ~l~---------------~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~---------------~~l~~L~~ 517 (636)
T 4eco_A 468 MLT---------------EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA---------------TTLPYLVG 517 (636)
T ss_dssp CCS---------------BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST---------------TTCTTCCE
T ss_pred CCC---------------CcCHHHhccccccccccCCccEEECcCCcCCccChhhhh---------------ccCCCcCE
Confidence 443 233222211 12344444444443333211110 01567777
Q ss_pred eeccccccCcccchhhccccccceeec------cCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEE
Q 045967 749 IDFSSNGFDGEISQVIGKLHSLRLLNL------THNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822 (929)
Q Consensus 749 LdLs~N~l~~~ip~~l~~L~~L~~L~L------s~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~ 822 (929)
|+|++|++++ +|..++++++|++|+| ++|++.+.+|..++++++|++|+|++|++ +.+|..+. ++|+.||
T Consensus 518 L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~ 593 (636)
T 4eco_A 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLD 593 (636)
T ss_dssp EECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEE
T ss_pred EECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEE
Confidence 8888888776 7777777888888877 45667777787787888888888888888 46676655 6788888
Q ss_pred CccCcCcc
Q 045967 823 ISHNRLDG 830 (929)
Q Consensus 823 Ls~N~l~g 830 (929)
+++|++..
T Consensus 594 Ls~N~l~~ 601 (636)
T 4eco_A 594 IKDNPNIS 601 (636)
T ss_dssp CCSCTTCE
T ss_pred CcCCCCcc
Confidence 88887653
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.9e-49 Score=481.09 Aligned_cols=522 Identities=18% Similarity=0.175 Sum_probs=316.6
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCCcccccccccccCCCCCCC-----CC--CCC------------cccccCCCCccccc
Q 045967 169 KHCPHEQSSALIQFKQLFSFDGDSSFVCQHSYPKMISWKKDT-----NY--CSW------------DGLTCDMATVSLET 229 (929)
Q Consensus 169 ~~c~~~e~~aLl~~k~~l~~~~~~~~~~~~~~~~l~sW~~~~-----~~--C~W------------~Gv~C~~~~~~~~~ 229 (929)
.++..+|+.||++||+++.++ +|+.+. +| |+| .||+|+..
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~---------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~------ 322 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK---------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN------ 322 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG---------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT------
T ss_pred cccchHHHHHHHHHHHHcCCC---------------CCCcCCCcccccCCccccccccccccccCcCceEecCC------
Confidence 345568999999999999642 475433 55 999 99999863
Q ss_pred CchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEEC-CCCCCCCCCccccCCC-CCCC
Q 045967 230 PVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLML-GYSQFVGPVPASLGNL-TQLT 307 (929)
Q Consensus 230 ~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~L-s~n~l~~~lp~~~~~l-~~L~ 307 (929)
.+|+.|+|+++++ .|.+|+++++|++|++|+| ++|.++|..|..-... ..+.
T Consensus 323 ----------~~V~~L~Ls~~~L----------------~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~ 376 (876)
T 4ecn_A 323 ----------GRVTGLSLAGFGA----------------KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376 (876)
T ss_dssp ----------SCEEEEECTTTCC----------------EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCC
T ss_pred ----------CCEEEEECccCCC----------------CCcCchHHhccccceEeeecccccccccccccccccccccc
Confidence 2799999999988 4566777888899999999 8888877644221111 0000
Q ss_pred E-----Ee---------c-cCccCCCC-----------CccccCCCCCCCEEEccC--CcCCCCCCC-CCCCCCCCEEeC
Q 045967 308 L-----LH---------L-MHNNFSSH-----------IPSSLSNLVQLTCLDLSG--NSFVGEIPD-IVNLTQVSFFDL 358 (929)
Q Consensus 308 ~-----L~---------L-s~n~l~~~-----------~p~~l~~L~~L~~L~Ls~--N~l~~~~p~-l~~L~~L~~L~L 358 (929)
. +. . ....+.+. .+........++.+.++. |++++ +|. ++++++|++|+|
T Consensus 377 ~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~L 455 (876)
T 4ecn_A 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYF 455 (876)
T ss_dssp HHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEE
T ss_pred hhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEEC
Confidence 0 00 0 00000000 000111222333333333 55555 333 666666666666
Q ss_pred CCCcCCC-CCCCCCcEEEcCCCCCCCCCCcccc--CCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCC-CCC-CC
Q 045967 359 SNNQLAG-PVPSHEMLIRLNNNSLSGTIPSWLF--SLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNR-LQG-SI 431 (929)
Q Consensus 359 s~n~l~~-~~p~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~-l~~-~~ 431 (929)
++|.+++ .+|.. .+..+.|.++|.+|..++ ++++|++|+|++|.+.+.+|.. .+++|++|+|++|+ +++ .+
T Consensus 456 s~N~Lsg~~i~~~--~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~i 533 (876)
T 4ecn_A 456 ANSPFTYDNIAVD--WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533 (876)
T ss_dssp ESCCCCGGGBSSS--CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHH
T ss_pred cCCcCCCCccccc--ccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccc
Confidence 6666665 12211 011222444455666666 7777777777777777766654 66777777777776 766 67
Q ss_pred ccccccCC-------CCcEEeccCCCCcCccchh--hhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCC
Q 045967 432 PSSIFELV-------NLIDLQLDSNNFSGIAEPY--MFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNIS 502 (929)
Q Consensus 432 p~~l~~l~-------~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 502 (929)
|..+++++ +|+.|++++|+++ .+| . .+.++++|+.|++++|++. .++....+++|+.|++++|.++
T Consensus 534 P~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip-~~~~l~~L~~L~~L~Ls~N~l~---~lp~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 534 KADWTRLADDEDTGPKIQIFYMGYNNLE-EFP-ASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp HHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC-CHHHHTTCTTCCEEECTTSCCC---BCCCCCTTSEESEEECCSSCCS
T ss_pred hHHHHhhhhcccccCCccEEEeeCCcCC-ccC-ChhhhhcCCCCCEEECCCCCcc---cchhhcCCCcceEEECcCCccc
Confidence 76666555 7777777777777 334 4 6777777777777777543 4442225677777777777777
Q ss_pred CCChhhhcccc-cceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccC--------CCCCccEEEcCCCCCCC
Q 045967 503 AFPSFLRTQDK-LFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQI--------SWKNLGYLDLRSNLLQG 573 (929)
Q Consensus 503 ~lp~~l~~~~~-L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~--------~~~~L~~L~Ls~N~l~~ 573 (929)
.+|..+..+++ |+.|++++|.+. .+|..+.....++|+.|++++|.+++..+. ..++|+.|++++|.++
T Consensus 609 ~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~- 686 (876)
T 4ecn_A 609 EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ- 686 (876)
T ss_dssp CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-
T ss_pred cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-
Confidence 78888888888 888888888887 667666222234488888888887765431 2246777777777775
Q ss_pred CCCCCCCcccchhhh-ccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCc
Q 045967 574 PLPVPPSREIIHSIC-DIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNK 652 (929)
Q Consensus 574 ~~~~~~~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 652 (929)
.+|..+. .+++|+.|++++|+++ .+|..+.... +..+.++++|+.|+|++|+
T Consensus 687 --------~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~------------------~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 687 --------KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK------------------DGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp --------SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT------------------TSCCTTGGGCCEEECCSSC
T ss_pred --------ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc------------------cccccccCCccEEECCCCC
Confidence 3444443 6777778888877776 5554432211 0112344577788888887
Q ss_pred CCCCCccccc--CCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEE
Q 045967 653 INDVFPYWLG--NLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVV 730 (929)
Q Consensus 653 l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~ 730 (929)
++ .+|..+. .+++|+.|+|++|+++ + +|..+ ..+++|+.|++++|+
T Consensus 740 L~-~lp~~l~~~~l~~L~~L~Ls~N~L~--------------~-lp~~l-~~L~~L~~L~Ls~N~--------------- 787 (876)
T 4ecn_A 740 LT-SLSDDFRATTLPYLSNMDVSYNCFS--------------S-FPTQP-LNSSQLKAFGIRHQR--------------- 787 (876)
T ss_dssp CC-CCCGGGSTTTCTTCCEEECCSSCCS--------------S-CCCGG-GGCTTCCEEECCCCB---------------
T ss_pred Cc-cchHHhhhccCCCcCEEEeCCCCCC--------------c-cchhh-hcCCCCCEEECCCCC---------------
Confidence 77 3466665 6777776655555443 2 44332 233333333332221
Q ss_pred EecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCch
Q 045967 731 TLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPK 810 (929)
Q Consensus 731 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~ 810 (929)
++++|++.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+.
T Consensus 788 -------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 788 -------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp -------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred -------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence 2334666666666666777777777777777 46666654 4677777777766655555
Q ss_pred hhccCCCCCEEECccCcC
Q 045967 811 QLASLTSLSVLNISHNRL 828 (929)
Q Consensus 811 ~l~~L~~L~~L~Ls~N~l 828 (929)
.+.....+..+.+.+|++
T Consensus 846 ~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 846 SVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp GGHHHHHTTCCEEECCTT
T ss_pred HccccccchheeecCCCc
Confidence 554444455555555554
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-47 Score=478.98 Aligned_cols=513 Identities=22% Similarity=0.254 Sum_probs=422.3
Q ss_pred CCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCC-ccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCE
Q 045967 278 NLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHI-PSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSF 355 (929)
Q Consensus 278 ~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~ 355 (929)
..++|++|+|++|.+++..|..|.++++|++|+|++|...+.+ |..|+++++|++|+|++|.+.+..|. +.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 3478999999999999988999999999999999999776666 78899999999999999999988776 999999999
Q ss_pred EeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCC--C-CCCCCcEEEecCCCCCCCCc
Q 045967 356 FDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDE--F-PSKSLQNIYLSNNRLQGSIP 432 (929)
Q Consensus 356 L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~--~-~l~~L~~L~Ls~N~l~~~~p 432 (929)
|++++|.+++.+|. ...+.++++|++|+|++|.+++..+. . .+++|++|++++|.+++..+
T Consensus 102 L~Ls~n~l~~~~~~----------------~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 102 LRLYFCGLSDAVLK----------------DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp EECTTCCCSSCCST----------------TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred eeCcCCCCCccccc----------------CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 99999988754331 12488999999999999999987653 2 89999999999999999999
Q ss_pred cccccC--CCCcEEeccCCCCcCccchhhhhccCc------ccEEEccCCCCCCCcccccc----CCCCCcceeeccccC
Q 045967 433 SSIFEL--VNLIDLQLDSNNFSGIAEPYMFAKLIK------LKYLYISHNSLSLGTTFKID----IPFPKFSYLSLFACN 500 (929)
Q Consensus 433 ~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~~~l~~------L~~L~Ls~N~l~~~~~~~~~----~~~~~L~~L~L~~n~ 500 (929)
..+..+ ++|+.|++++|.+.+..+ ..+..+++ |+.|++++|.+. +..+.. .....++.+.+..+.
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGNGWT--VDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSCCSS--TTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred HHcccccCCccceEECCCCccccccc-cchhhcCCccccCceeEEecCCCcCc--hhHHHHHHhhcCcccccceeccccc
Confidence 999888 899999999999998766 45555554 999999999543 332222 123445555554332
Q ss_pred CCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc---CCCCCccEEEcCCCCCCCCCCC
Q 045967 501 ISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLPV 577 (929)
Q Consensus 501 l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~Ls~N~l~~~~~~ 577 (929)
... +...+.+.+.....+.....++|+.|++++|.+.+..+ ..+++|+.|++++|.++
T Consensus 243 ~~~--------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~----- 303 (844)
T 3j0a_A 243 MGA--------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN----- 303 (844)
T ss_dssp CBC--------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-----
T ss_pred ccc--------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-----
Confidence 221 12233444433444422234789999999999998876 45689999999999998
Q ss_pred CCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCC
Q 045967 578 PPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVF 657 (929)
Q Consensus 578 ~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 657 (929)
+..+..+..+++|++|++++|++++..|..+..++.+ +.|++++|.+.+..+..|.++++|++|++++|.+++..
T Consensus 304 ---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 304 ---KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV--AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp ---EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC--CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred ---CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC--CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 6667788999999999999999998889999999874 59999999999998889999999999999999998652
Q ss_pred cccccCCCCCceeecccccccc------ccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEE
Q 045967 658 PYWLGNLPELRVLVLRSNKLRG------SLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVT 731 (929)
Q Consensus 658 p~~~~~l~~L~~L~Ls~N~l~~------~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~ 731 (929)
.+++|+.|++++|+++. .++.|++++|++++.-....+..+++|+.|++++|.+.........
T Consensus 379 -----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------ 447 (844)
T 3j0a_A 379 -----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP------ 447 (844)
T ss_dssp -----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS------
T ss_pred -----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc------
Confidence 38899999999999875 3889999999999755555567899999999999998765432110
Q ss_pred ecCchhhHhhhcccccEeeccccccC-----cccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCC
Q 045967 732 LKGTEIELQKILTVFTTIDFSSNGFD-----GEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAG 806 (929)
Q Consensus 732 ~~~~~~~~~~~l~~L~~LdLs~N~l~-----~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~ 806 (929)
..+++|+.|++++|.++ +..+..|.++++|++|+|++|++++.+|..|..+++|+.|+|++|++++
T Consensus 448 ---------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 448 ---------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp ---------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred ---------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 11678999999999997 4556778999999999999999999999999999999999999999998
Q ss_pred CCchhhccCCCCCEEECccCcCccCCCCCCCCCccccccccCCcCCCCCCC
Q 045967 807 KIPKQLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSYIGNLGLCGFSL 857 (929)
Q Consensus 807 ~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~Lcg~~l 857 (929)
..|..+. ++|+.||+++|+++|.+|.. |..+....+.|||..|+.++
T Consensus 519 l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 519 LSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred cChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 8777766 89999999999999999864 55777788899999997654
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.3e-47 Score=455.31 Aligned_cols=527 Identities=19% Similarity=0.166 Sum_probs=372.8
Q ss_pred CceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCC
Q 045967 241 KLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHI 320 (929)
Q Consensus 241 ~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 320 (929)
.-+.++.+++++ ..+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..
T Consensus 12 ~~~~~~c~~~~l-----------------~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~ 72 (606)
T 3vq2_A 12 PNITYQCMDQKL-----------------SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72 (606)
T ss_dssp TTTEEECTTSCC-----------------SSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCceEccCCCc-----------------ccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccC
Confidence 357888888766 34555443 78999999999998877778999999999999999999888
Q ss_pred ccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEE
Q 045967 321 PSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVR 399 (929)
Q Consensus 321 p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 399 (929)
|..|+++++|++|++++|.+++..|. ++++++|++|++++|.+++ ..+..++++++|++|+
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS------------------LESFPIGQLITLKKLN 134 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC------------------SSSSCCTTCTTCCEEE
T ss_pred HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc------------------ccccccCCCCCCCEEe
Confidence 88899999999999999999887676 8889999999888888763 2335688899999999
Q ss_pred cccccCCC-CCCCC--CCCCCcEEEecCCCCCCCCccccccCCCCc----EEeccCCCCcCccchhhhhccCcccEEEcc
Q 045967 400 LSDNQLSG-HIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLI----DLQLDSNNFSGIAEPYMFAKLIKLKYLYIS 472 (929)
Q Consensus 400 Ls~N~l~~-~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 472 (929)
+++|.+++ .+|.. .+++|++|++++|++++..+..+..+++|+ +|++++|.+++..+ ..+... +|++|+++
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~-~~~~~~-~L~~L~L~ 212 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD-QAFQGI-KLHELTLR 212 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT-TTTTTC-EEEEEEEE
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCc-ccccCc-eeeeeecc
Confidence 99999885 44544 788899999999988877777777776665 78899988887654 445444 88888888
Q ss_pred CCCCCCCccccccC-CCCCcceeeccccCCCC------CC-hhhhccc--ccceecc-CCCcCCCCCchhhhccCCCCcc
Q 045967 473 HNSLSLGTTFKIDI-PFPKFSYLSLFACNISA------FP-SFLRTQD--KLFYLDL-SESKIDGQIPRWISKIGKDSLS 541 (929)
Q Consensus 473 ~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~------lp-~~l~~~~--~L~~L~L-s~N~l~~~~p~~l~~~~~~~L~ 541 (929)
+|.+.. +..+... .++.++.+.+..+.+.. ++ ..+..+. .++.+++ ..|.+.+.+|. + ..+++|+
T Consensus 213 ~n~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~--~~l~~L~ 288 (606)
T 3vq2_A 213 GNFNSS-NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-F--HCLANVS 288 (606)
T ss_dssp SCCSCH-HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-C--GGGTTCS
T ss_pred CCccch-hHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-c--ccCCCCC
Confidence 884321 1222222 56666666554433221 11 1111111 3444555 55555555554 3 4556666
Q ss_pred EEeccccccccccc-CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccc
Q 045967 542 YLNLSHNFITKMKQ-ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSV 620 (929)
Q Consensus 542 ~L~Ls~N~l~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~ 620 (929)
.|++++|.+..+.. ..+++|+.|++++|.+. .+| .+ .+++|++|++++|+..+.+ .+..++.+ +
T Consensus 289 ~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~---------~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L--~ 353 (606)
T 3vq2_A 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK---------QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSL--S 353 (606)
T ss_dssp EEEEESCCCCCCCCCCTTCCCSEEEEESCCCS---------SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTC--C
T ss_pred EEEecCccchhhhhccccccCCEEEcccccCc---------ccc-cC-CCCccceeeccCCcCccch--hhccCCCC--C
Confidence 66666666655542 33456666666666652 233 22 5566666666666443322 33344432 3
Q ss_pred eeeccCcccCCC--CcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHH
Q 045967 621 SLNLNNNELEGA--NPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPAR 698 (929)
Q Consensus 621 ~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~ 698 (929)
.|++++|.+++. .+..+..+++|++|++++|.+++. |..+..+++|+.| ++++|.+++..|..
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L--------------~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHL--------------DFQHSTLKRVTEFS 418 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEE--------------ECTTSEEESTTTTT
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCee--------------ECCCCccCCccChh
Confidence 566666655544 244555556666666666655543 3455555555555 55555555566656
Q ss_pred HHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCc-ccchhhccccccceeeccC
Q 045967 699 FFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDG-EISQVIGKLHSLRLLNLTH 777 (929)
Q Consensus 699 ~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~ip~~l~~L~~L~~L~Ls~ 777 (929)
.+..+++|+.|++++|.+.......+. .+++|+.|++++|++++ .+|..++++++|++|+|++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFL----------------GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTT----------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhc----------------CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 778999999999999988665433222 37899999999999998 4799999999999999999
Q ss_pred ccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCCCC-CCC-ccccccccCCcCCCCC
Q 045967 778 NHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQGP-QFN-TIQEDSYIGNLGLCGF 855 (929)
Q Consensus 778 N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~-~~~-~~~~~~~~gn~~Lcg~ 855 (929)
|++++.+|..++++++|++|+|++|++++.+|..+.++++|++|++++|+++ .+|... .+. .+....+.||+..|+.
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999998 677652 222 3556678889888865
Q ss_pred CC
Q 045967 856 SL 857 (929)
Q Consensus 856 ~l 857 (929)
++
T Consensus 562 ~~ 563 (606)
T 3vq2_A 562 EH 563 (606)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-46 Score=445.66 Aligned_cols=460 Identities=18% Similarity=0.211 Sum_probs=284.8
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDL 358 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~L 358 (929)
++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++++|++|++++|.+++..+. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 3455555555555544445555555555555555555554445555555555555555555554444 555555555555
Q ss_pred CCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC---CCCCCcEEEecCCCCCCCCcccc
Q 045967 359 SNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF---PSKSLQNIYLSNNRLQGSIPSSI 435 (929)
Q Consensus 359 s~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~p~~l 435 (929)
++|.+++. ..|..++++++|++|++++|.+.+.++.. .+++|++|++++|++++..|..+
T Consensus 106 s~n~l~~~-----------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 106 MGNPYQTL-----------------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp TTCCCSSS-----------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCCccccc-----------------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 55544421 12334555555555555555533333321 45556666666666665566666
Q ss_pred ccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCcccccc--CCCCCcceeeccccCCC-----CCChhh
Q 045967 436 FELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKID--IPFPKFSYLSLFACNIS-----AFPSFL 508 (929)
Q Consensus 436 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~L~~L~L~~n~l~-----~lp~~l 508 (929)
.++++|++|++++|.+... +...+..+++|++|++++|++......+.. ..+++|+.|++.+|.++ .++..+
T Consensus 169 ~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247 (549)
T ss_dssp TTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred hccccCceEecccCccccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence 6666666666666665443 223344566666666666643321111111 13455666666665544 233344
Q ss_pred hcccccceeccCCCcCCCCCc------hhhhccCCCCccEEeccccccccccc--------CCCCCccEEEcCCCCCCCC
Q 045967 509 RTQDKLFYLDLSESKIDGQIP------RWISKIGKDSLSYLNLSHNFITKMKQ--------ISWKNLGYLDLRSNLLQGP 574 (929)
Q Consensus 509 ~~~~~L~~L~Ls~N~l~~~~p------~~l~~~~~~~L~~L~Ls~N~l~~~~~--------~~~~~L~~L~Ls~N~l~~~ 574 (929)
..+++|+.+++++|.+.+... ..+ ..+++|+.|++.++.+..... ....+|+.|++++|.+.
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-- 323 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFNPSESDVV--SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-- 323 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCCCCTTTCC--CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC--
T ss_pred hhhccccccccccccccccccccccchhhh--hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc--
Confidence 566777778887777665311 112 345677777777776654321 12356777888777764
Q ss_pred CCCCCCcccchhh-hccCCCCEEeCCCCcCcCCCcc---ccccCcccccceeeccCcccCCCCc--ccccCCCCCcEEEc
Q 045967 575 LPVPPSREIIHSI-CDIIALDVLDLSNNRLSGTIPE---CIGNFSPWLSVSLNLNNNELEGANP--QSLVNCTKLEVLDI 648 (929)
Q Consensus 575 ~~~~~~~~~p~~l-~~l~~L~~L~Ls~N~l~~~ip~---~l~~l~~ll~~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L 648 (929)
.+|..+ ..+++|++|++++|++++.+|. .++.++.+ +.|++++|++++..+ ..+..+++|++|++
T Consensus 324 -------~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L--~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~L 394 (549)
T 2z81_A 324 -------LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL--QTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394 (549)
T ss_dssp -------CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC--CEEECTTSCCCCHHHHHHHGGGCTTCCEEEC
T ss_pred -------cCCHHHHhcCccccEEEccCCccccccccchhhhhccccC--cEEEccCCcccccccchhhhhcCCCCCEEEC
Confidence 455555 4677788888888887766543 24455543 467777777765532 34666777777777
Q ss_pred cCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccce
Q 045967 649 GNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSV 728 (929)
Q Consensus 649 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~ 728 (929)
++|++++ +|..+..+++|++|++++|+++ .+|..
T Consensus 395 s~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~---------------~l~~~------------------------------ 428 (549)
T 2z81_A 395 SRNTFHP-MPDSCQWPEKMRFLNLSSTGIR---------------VVKTC------------------------------ 428 (549)
T ss_dssp TTCCCCC-CCSCCCCCTTCCEEECTTSCCS---------------CCCTT------------------------------
T ss_pred CCCCCcc-CChhhcccccccEEECCCCCcc---------------cccch------------------------------
Confidence 7777764 4566666666666666665543 22211
Q ss_pred EEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCC
Q 045967 729 VVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKI 808 (929)
Q Consensus 729 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~i 808 (929)
..++|+.||+++|++++.+ +.+++|++|+|++|+++ .+|. ...+++|++|||++|++++.+
T Consensus 429 -------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 429 -------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp -------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCC
T ss_pred -------------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcC
Confidence 0347899999999999753 57899999999999999 6776 578999999999999999999
Q ss_pred chhhccCCCCCEEECccCcCccCCCCC
Q 045967 809 PKQLASLTSLSVLNISHNRLDGPIPQG 835 (929)
Q Consensus 809 p~~l~~L~~L~~L~Ls~N~l~g~iP~~ 835 (929)
|..+..+++|++|++++|++.|.+|..
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 490 DGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp TTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred HHHHhcCcccCEEEecCCCccCCCccH
Confidence 999999999999999999999998853
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-46 Score=443.97 Aligned_cols=492 Identities=18% Similarity=0.175 Sum_probs=368.5
Q ss_pred CCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCC
Q 045967 240 TKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSH 319 (929)
Q Consensus 240 ~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 319 (929)
++++.|+|++|.+++.. +..+.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++.
T Consensus 28 ~~l~~L~Ls~n~l~~~~----------------~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLG----------------SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp SSCCEEECCSCCCCEEC----------------TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ccccEEEccCCccCccC----------------hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc
Confidence 47899999999885433 34567779999999999999887778899999999999999999888
Q ss_pred CccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEE
Q 045967 320 IPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYV 398 (929)
Q Consensus 320 ~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 398 (929)
.|..|+++++|++|++++|++++..+. ++++++|++|++++|.+++. .+|..++++++|++|
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-----------------~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------KLPEYFSNLTNLEHL 154 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-----------------CCCGGGGGCTTCCEE
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCCcccee-----------------cChhhhcccCCCCEE
Confidence 788899999999999999998876553 88899999999988887631 356778888888888
Q ss_pred EcccccCCCCCCCC--CCCCC----cEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEcc
Q 045967 399 RLSDNQLSGHIDEF--PSKSL----QNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYIS 472 (929)
Q Consensus 399 ~Ls~N~l~~~~~~~--~l~~L----~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 472 (929)
++++|++++..+.. .+++| +.|++++|.+++..|..+... +|+.|++++|.......+..+..+++++.+.+.
T Consensus 155 ~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp ECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred eCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeec
Confidence 88888887655443 44555 788888888887666666655 788888888865543334667777777776665
Q ss_pred CCCCCCCccc---ccc-C-CC--CCcceeecccc-CCC-CCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEE
Q 045967 473 HNSLSLGTTF---KID-I-PF--PKFSYLSLFAC-NIS-AFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYL 543 (929)
Q Consensus 473 ~N~l~~~~~~---~~~-~-~~--~~L~~L~L~~n-~l~-~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L 543 (929)
...+...+.+ ... . .+ -.++.+++.++ .+. .+|..+..+++|+.|++++|.+. .+|.++ ..+ +|++|
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~--~~~-~L~~L 309 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS--YNF-GWQHL 309 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCC--SCC-CCSEE
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhh--ccC-CccEE
Confidence 4322111111 000 0 11 12445555555 333 56777888888999999988887 466666 555 88889
Q ss_pred ecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCC--ccccccCcccccce
Q 045967 544 NLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTI--PECIGNFSPWLSVS 621 (929)
Q Consensus 544 ~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~i--p~~l~~l~~ll~~~ 621 (929)
++++|.+..++...+++|+.|++++|.+. +..+. ..+++|++|++++|++++.. |..+..++.+ +.
T Consensus 310 ~l~~n~~~~l~~~~l~~L~~L~l~~n~~~--------~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L--~~ 377 (570)
T 2z63_A 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGG--------NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL--KY 377 (570)
T ss_dssp EEESCBCSSCCBCBCSSCCEEEEESCBSC--------CBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC--CE
T ss_pred eeccCcccccCcccccccCEEeCcCCccc--------ccccc--ccCCCCCEEeCcCCccCccccccccccccCcc--CE
Confidence 99988888777777888888888888876 33322 56788888888888887543 5555566553 46
Q ss_pred eeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCc-ccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHH
Q 045967 622 LNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFP-YWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFF 700 (929)
Q Consensus 622 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~ 700 (929)
|++++|.+.+..+. +.++++|++|++++|.+.+..+ ..+..+++|++|++++|++. +..|. .+
T Consensus 378 L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--------------~~~~~-~~ 441 (570)
T 2z63_A 378 LDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--------------VAFNG-IF 441 (570)
T ss_dssp EECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE--------------ECCTT-TT
T ss_pred EECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc--------------ccchh-hh
Confidence 77777777665444 6677777777777777766654 45666666666655555443 22221 11
Q ss_pred hhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccC-cccchhhccccccceeeccCcc
Q 045967 701 EKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFD-GEISQVIGKLHSLRLLNLTHNH 779 (929)
Q Consensus 701 ~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~L~~L~~L~Ls~N~ 779 (929)
..+++|+.|++++|.++ +.+|..++.+++|++|+|++|+
T Consensus 442 ----------------------------------------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 442 ----------------------------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ----------------------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ----------------------------------------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 12678999999999998 6789999999999999999999
Q ss_pred CCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCCCCC
Q 045967 780 FTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQGPQ 837 (929)
Q Consensus 780 l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~~ 837 (929)
+++..|..|+++++|++|+|++|++++..|..+.++++|+.|++++|+++|.+|....
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 9999999999999999999999999999888999999999999999999999997543
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3e-42 Score=417.35 Aligned_cols=530 Identities=18% Similarity=0.145 Sum_probs=370.2
Q ss_pred ccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCC
Q 045967 217 GLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPV 296 (929)
Q Consensus 217 Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~l 296 (929)
.|.|...++. .+|+.+. +.+++|||++|+|++..+ .+|.++++|++|+|++|.+++..
T Consensus 35 ~~~c~~~~l~----~vP~~lp--~~~~~LdLs~N~i~~l~~----------------~~f~~l~~L~~L~Ls~N~i~~i~ 92 (635)
T 4g8a_A 35 TYQCMELNFY----KIPDNLP--FSTKNLDLSFNPLRHLGS----------------YSFFSFPELQVLDLSRCEIQTIE 92 (635)
T ss_dssp EEECTTSCCS----SCCSSSC--TTCCEEECTTSCCCEECT----------------TTTTTCTTCCEEECTTCCCCEEC
T ss_pred EEECCCCCcC----ccCCCCC--cCCCEEEeeCCCCCCCCH----------------HHHhCCCCCCEEECCCCcCCCcC
Confidence 4567655432 2333222 378999999998854332 45677799999999999999877
Q ss_pred ccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCCCCcEEE
Q 045967 297 PASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPSHEMLIR 375 (929)
Q Consensus 297 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~ 375 (929)
|.+|.++++|++|+|++|++++..+..|.++++|++|++++|++++..+. ++++++|++|++++|.+++.
T Consensus 93 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~--------- 163 (635)
T 4g8a_A 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--------- 163 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC---------
T ss_pred hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC---------
Confidence 78899999999999999999987778899999999999999999987765 88999999999999988642
Q ss_pred cCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC-----CC-CCCcEEEecCCCCCCCCccccccCCCCcEEeccCC
Q 045967 376 LNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-----PS-KSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSN 449 (929)
Q Consensus 376 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-----~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 449 (929)
.+|..++++++|++|++++|++++..+.. .. ..+..++++.|.++.. +........++.+++.+|
T Consensus 164 --------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i-~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 164 --------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp --------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE-CTTTTTTCEEEEEEEESC
T ss_pred --------CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc-Ccccccchhhhhhhhhcc
Confidence 34566777888888888888887655443 12 2345678888887643 333444456677788777
Q ss_pred CCcCccchhhhhccCcccEEEccCCCCCCCcccccc----C-CCCCcceeeccccCCC----CCChhhhcccccceeccC
Q 045967 450 NFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKID----I-PFPKFSYLSLFACNIS----AFPSFLRTQDKLFYLDLS 520 (929)
Q Consensus 450 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~-~~~~L~~L~L~~n~l~----~lp~~l~~~~~L~~L~Ls 520 (929)
..........+..+..++...+..+........... . ....+....+..+... .++..+....+++.+++.
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 314 (635)
T 4g8a_A 235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV 314 (635)
T ss_dssp CSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE
T ss_pred cccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc
Confidence 665544445677777777666654422111111110 1 2223333333333221 334445666777788887
Q ss_pred CCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCC
Q 045967 521 ESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSN 600 (929)
Q Consensus 521 ~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~ 600 (929)
++.+....+ + .....++.|++.+|.+.+.....+..|+.+++..|.... +.....+++|+.+++++
T Consensus 315 ~~~~~~~~~--~--~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~----------~~~~~~l~~L~~L~ls~ 380 (635)
T 4g8a_A 315 SVTIERVKD--F--SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN----------AFSEVDLPSLEFLDLSR 380 (635)
T ss_dssp SCEEEECGG--G--GSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC----------BCCCCBCTTCCEEECCS
T ss_pred ccccccccc--c--ccchhhhhhhcccccccCcCcccchhhhhcccccccCCC----------Ccccccccccccchhhc
Confidence 777664332 2 345678888888888888777777888888888877652 12234577888888888
Q ss_pred CcCcC--CCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCc-ccccCCCCCceeecccccc
Q 045967 601 NRLSG--TIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFP-YWLGNLPELRVLVLRSNKL 677 (929)
Q Consensus 601 N~l~~--~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l 677 (929)
|.+.. ..+..+.....+ ..+++..|.+... +..+..+++|+.+++++|......+ ..+..+++++.+++++|.+
T Consensus 381 n~l~~~~~~~~~~~~~~~L--~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 381 NGLSFKGCCSQSDFGTISL--KYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp SCCBEEEECCHHHHSCSCC--CEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred cccccccccccchhhhhhh--hhhhccccccccc-cccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence 87753 233334444432 4677777766554 3456677778888887776655433 3456667777666666655
Q ss_pred ccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccc-cCccccccceEEEecCchhhHhhhcccccEeecccccc
Q 045967 678 RGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRY-LGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGF 756 (929)
Q Consensus 678 ~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 756 (929)
. + ++...+..++.++.|++++|.... +.+..+ ..+++|+.|||++|++
T Consensus 458 ~--------------~-~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~----------------~~l~~L~~L~Ls~N~L 506 (635)
T 4g8a_A 458 R--------------V-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIF----------------TELRNLTFLDLSQCQL 506 (635)
T ss_dssp E--------------E-CCTTTTTTCTTCCEEECTTCEEGGGEECSCC----------------TTCTTCCEEECTTSCC
T ss_pred c--------------c-ccccccccchhhhhhhhhhcccccccCchhh----------------hhccccCEEECCCCcc
Confidence 4 2 222344556666666666664211 111111 2278899999999999
Q ss_pred CcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccC-CCCCEEECccCcCccCCCC
Q 045967 757 DGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASL-TSLSVLNISHNRLDGPIPQ 834 (929)
Q Consensus 757 ~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L-~~L~~L~Ls~N~l~g~iP~ 834 (929)
++..|..|+++++|++|+|++|+|++..|..|+++++|++|||++|+|++..|..|..+ ++|++|++++|++.+.+..
T Consensus 507 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999999999999999999999999999999999999999999999999998 6899999999999987763
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-42 Score=415.36 Aligned_cols=481 Identities=20% Similarity=0.203 Sum_probs=325.1
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDL 358 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~L 358 (929)
+++++|++++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++|++++|.+++..|. +.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 5799999999999987788899999999999999999988888899999999999999999887765 889999999999
Q ss_pred CCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCC-CCCCC--CCCCCcEEEecCCCCCCCCcccc
Q 045967 359 SNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSG-HIDEF--PSKSLQNIYLSNNRLQGSIPSSI 435 (929)
Q Consensus 359 s~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l 435 (929)
++|.+++. .+..++++++|++|++++|.+++ .+|.. .+++|++|++++|++++..+..+
T Consensus 108 ~~n~l~~l------------------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 169 (570)
T 2z63_A 108 VETNLASL------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (570)
T ss_dssp TTSCCCCS------------------TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred cccccccC------------------CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence 99888732 22358899999999999999886 34544 68899999999999988778888
Q ss_pred ccCCCC----cEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccC-CCCCcceeeccccCC------CCC
Q 045967 436 FELVNL----IDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKFSYLSLFACNI------SAF 504 (929)
Q Consensus 436 ~~l~~L----~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l------~~l 504 (929)
..+++| +.|++++|.+++..+ ..+... +|++|++++|.... ..++... .++.++.+.+....+ ..+
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~-~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSL-NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCT-THHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred cchhccchhhhhcccCCCCceecCH-HHhccC-cceeEecccccccc-cchhhhhcCccccceeeeccccccCchhhhhc
Confidence 888888 889999999988765 566655 79999998884221 1122111 344444443322211 111
Q ss_pred Ch-hhhccc--ccceeccCCC-cCCCCCchhhhccCCCCccEEeccccccccccc--CCCCCccEEEcCCCCCCCCCCCC
Q 045967 505 PS-FLRTQD--KLFYLDLSES-KIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLPVP 578 (929)
Q Consensus 505 p~-~l~~~~--~L~~L~Ls~N-~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~--~~~~~L~~L~Ls~N~l~~~~~~~ 578 (929)
+. .+..+. .++.++++++ .+.+..|..+ ..+++|+.|++++|.+++++. ..+ +|+.|++++|.+.
T Consensus 247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~------ 317 (570)
T 2z63_A 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF--NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG------ 317 (570)
T ss_dssp CTTTTGGGGGSEEEEEEEEETTEEESCSTTTT--GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS------
T ss_pred chhhhccccccchhhhhhhcchhhhhhchhhh--cCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc------
Confidence 11 111111 2344555555 4455555555 445556666666655554432 222 4555555555543
Q ss_pred CCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCC-
Q 045967 579 PSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVF- 657 (929)
Q Consensus 579 ~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~- 657 (929)
.+|. ..+++|+.|++++|.+. +..+. ..+++|++|++++|++++..
T Consensus 318 ---~l~~--~~l~~L~~L~l~~n~~~--------------------------~~~~~--~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 318 ---QFPT--LKLKSLKRLTFTSNKGG--------------------------NAFSE--VDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp ---SCCB--CBCSSCCEEEEESCBSC--------------------------CBCCC--CBCTTCCEEECCSSCCBEEEE
T ss_pred ---ccCc--ccccccCEEeCcCCccc--------------------------ccccc--ccCCCCCEEeCcCCccCcccc
Confidence 1111 23444555555555444 33332 34455555555555554432
Q ss_pred -cccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCch
Q 045967 658 -PYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTE 736 (929)
Q Consensus 658 -p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~ 736 (929)
+..+..+++|++|++++|++++ +|.. +..+++|+.|++++|.+......
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~---------------~~~~-~~~l~~L~~L~l~~n~l~~~~~~-------------- 414 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVIT---------------MSSN-FLGLEQLEHLDFQHSNLKQMSEF-------------- 414 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEE---------------EEEE-EETCTTCCEEECTTSEEESCTTS--------------
T ss_pred ccccccccCccCEEECCCCcccc---------------cccc-ccccCCCCEEEccCCccccccch--------------
Confidence 3444455555555444444331 1111 22333344444443333222110
Q ss_pred hhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCC-CCCCccccCcCCCCEeeCCCCcCCCCCchhhccC
Q 045967 737 IELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFT-GKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASL 815 (929)
Q Consensus 737 ~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~-~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L 815 (929)
.....+++|+.|++++|.+++..|..+.++++|++|+|++|.++ +.+|..++.+++|++|+|++|++++..|..+.++
T Consensus 415 -~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 415 -SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp -CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred -hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 00112678999999999999999999999999999999999998 6799999999999999999999999999999999
Q ss_pred CCCCEEECccCcCccCCCCC-CCCCccccccccCCcCCCC
Q 045967 816 TSLSVLNISHNRLDGPIPQG-PQFNTIQEDSYIGNLGLCG 854 (929)
Q Consensus 816 ~~L~~L~Ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~Lcg 854 (929)
++|++|++++|++++..|.. ..+..+....+.+|+.-|.
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 99999999999999877653 2345556666777766554
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.1e-43 Score=412.46 Aligned_cols=465 Identities=18% Similarity=0.230 Sum_probs=307.6
Q ss_pred eEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCcc
Q 045967 243 QVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPS 322 (929)
Q Consensus 243 ~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~ 322 (929)
++||+++|++++ +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|.
T Consensus 3 ~~l~ls~n~l~~-----------------ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 63 (520)
T 2z7x_B 3 FLVDRSKNGLIH-----------------VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63 (520)
T ss_dssp CEEECTTSCCSS-----------------CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG
T ss_pred ceEecCCCCccc-----------------cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH
Confidence 478899988742 344444 7899999999999887778899999999999999999988888
Q ss_pred ccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEccc
Q 045967 323 SLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSD 402 (929)
Q Consensus 323 ~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 402 (929)
.|+++++|++|++++|++++ +|.. .+++|++|++++|.+++. .+|..++++++|++|++++
T Consensus 64 ~~~~l~~L~~L~Ls~N~l~~-lp~~-~l~~L~~L~L~~N~l~~~-----------------~~p~~~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 64 VFKFNQELEYLDLSHNKLVK-ISCH-PTVNLKHLDLSFNAFDAL-----------------PICKEFGNMSQLKFLGLST 124 (520)
T ss_dssp GGTTCTTCCEEECCSSCCCE-EECC-CCCCCSEEECCSSCCSSC-----------------CCCGGGGGCTTCCEEEEEE
T ss_pred HhhcccCCCEEecCCCceee-cCcc-ccCCccEEeccCCccccc-----------------cchhhhccCCcceEEEecC
Confidence 99999999999999999884 4444 788888888888877631 3567899999999999999
Q ss_pred ccCCCCCCCCCCCCC--cEEEecCCCC--CCCCccccccCC-CCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCC
Q 045967 403 NQLSGHIDEFPSKSL--QNIYLSNNRL--QGSIPSSIFELV-NLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLS 477 (929)
Q Consensus 403 N~l~~~~~~~~l~~L--~~L~Ls~N~l--~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 477 (929)
|.+++. ....+++| ++|++++|.+ .+..|..+..+. +...+++++|++.+..+...+.++++|+.|++++|...
T Consensus 125 n~l~~~-~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 203 (520)
T 2z7x_B 125 THLEKS-SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203 (520)
T ss_dssp SSCCGG-GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred cccchh-hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence 998752 22256667 9999999988 777787777765 34467788888877766567777888888888877310
Q ss_pred CCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhh-ccCCCCccEEeccccccccccc-
Q 045967 478 LGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWIS-KIGKDSLSYLNLSHNFITKMKQ- 555 (929)
Q Consensus 478 ~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~-~~~~~~L~~L~Ls~N~l~~~~~- 555 (929)
.... .+......+..+++|+.|++++|.+.+..+..+. ....++|++|++++|.+++..+
T Consensus 204 ~~~~------------------~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 265 (520)
T 2z7x_B 204 NKCS------------------YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265 (520)
T ss_dssp TTTH------------------HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC
T ss_pred cccc------------------eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc
Confidence 0000 0001112456667777777777766643332221 0113466666666666664333
Q ss_pred -------CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhcc---CCCCEEeCCCCcCcCCCccccccCcccccceeecc
Q 045967 556 -------ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDI---IALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLN 625 (929)
Q Consensus 556 -------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls 625 (929)
..+++|+.+++++|.+. +| . ..+..+ .+|+.|++++|.+.
T Consensus 266 ~~~~~~~~~l~~L~~l~l~~n~~~--~p----~---~~~~~~~~~~~L~~L~l~~n~l~--------------------- 315 (520)
T 2z7x_B 266 RDFDYSGTSLKALSIHQVVSDVFG--FP----Q---SYIYEIFSNMNIKNFTVSGTRMV--------------------- 315 (520)
T ss_dssp CCCCCCSCCCCEEEEEEEEECCCC--SC----T---HHHHHHHHTCCCSEEEEESSCCC---------------------
T ss_pred chhhcccccCceeEecccccccee--cc----h---hhhhcccccCceeEEEcCCCccc---------------------
Confidence 22344455555555441 11 0 122222 34555555555443
Q ss_pred CcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhc
Q 045967 626 NNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNA 705 (929)
Q Consensus 626 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~ 705 (929)
... .+..+++|++|++++|++++.+|.+++.+++|++|++++|++++. +.+| ..+..+++
T Consensus 316 -----~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l------------~~~~-~~~~~l~~ 375 (520)
T 2z7x_B 316 -----HML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL------------SKIA-EMTTQMKS 375 (520)
T ss_dssp -----CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH------------HHHH-HHHTTCTT
T ss_pred -----ccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc------------ccch-HHHhhCCC
Confidence 221 013444555555555555554455555555555444444443310 0011 12333344
Q ss_pred ccccccCCCcccc-cCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCC
Q 045967 706 MRNVGADEGKLRY-LGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKI 784 (929)
Q Consensus 706 L~~L~ls~n~l~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~i 784 (929)
|+.|++++|.+.. ++...+. .++.|+.|++++|++++.+|..+. ++|++|+|++|+++ .+
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~----------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~i 436 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCS----------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SI 436 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCC----------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CC
T ss_pred CCEEECCCCcCCcccccchhc----------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-cc
Confidence 4444444443332 2211111 167899999999999988887765 79999999999999 88
Q ss_pred CccccCcCCCCEeeCCCCcCCCCCchh-hccCCCCCEEECccCcCccCCCC
Q 045967 785 PSSLGNLAKLESLDLSSNNLAGKIPKQ-LASLTSLSVLNISHNRLDGPIPQ 834 (929)
Q Consensus 785 p~~l~~L~~L~~LdLs~N~ls~~ip~~-l~~L~~L~~L~Ls~N~l~g~iP~ 834 (929)
|..+..+++|++|+|++|++++ +|.. +..+++|++|++++|+++|.++.
T Consensus 437 p~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 437 PKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred chhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 8888899999999999999995 5554 99999999999999999998774
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-41 Score=404.98 Aligned_cols=476 Identities=18% Similarity=0.202 Sum_probs=330.3
Q ss_pred CCCCcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCC
Q 045967 212 YCSWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQ 291 (929)
Q Consensus 212 ~C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~ 291 (929)
.|.|.|+ |+.....+. .+|+.+. ++|++|+|++|.+++.. |..++++++|++|++++|.
T Consensus 3 ~C~~~~~-c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~----------------~~~~~~l~~L~~L~Ls~n~ 61 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIG----------------HGDLRACANLQVLILKSSR 61 (549)
T ss_dssp EECTTSE-EECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEEC----------------SSTTSSCTTCCEEECTTSC
T ss_pred cCCCCce-EECCCCccc--cccccCC--CCccEEECcCCccCccC----------------hhhhhcCCcccEEECCCCC
Confidence 4999999 875432222 2444443 68999999999985443 4567778999999999999
Q ss_pred CCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCC-C-CCCCCCCCCCEEeCCCCcCCCCCCC
Q 045967 292 FVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGE-I-PDIVNLTQVSFFDLSNNQLAGPVPS 369 (929)
Q Consensus 292 l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~-~-p~l~~L~~L~~L~Ls~n~l~~~~p~ 369 (929)
+++..|..|+++++|++|+|++|++++..|..|+++++|++|++++|.+++. . +.++++++|++|++++|.+.+.+|.
T Consensus 62 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence 9998889999999999999999999988888899999999999999999863 3 3489999999999999986655543
Q ss_pred C-------CcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCCCCCCC--cc-cccc
Q 045967 370 H-------EMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSI--PS-SIFE 437 (929)
Q Consensus 370 ~-------L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~--p~-~l~~ 437 (929)
. |++|++++|.+++..|..++++++|++|++++|.+....... .+++|++|++++|++++.. |. ....
T Consensus 142 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221 (549)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred hhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhh
Confidence 2 788888888888888888888888888888888765322221 4778888888888887642 21 2234
Q ss_pred CCCCcEEeccCCCCcCccch---hhhhccCcccEEEccCCCCCCCcccccc-----CCCCCcceeeccccCCCCC-----
Q 045967 438 LVNLIDLQLDSNNFSGIAEP---YMFAKLIKLKYLYISHNSLSLGTTFKID-----IPFPKFSYLSLFACNISAF----- 504 (929)
Q Consensus 438 l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~~~~~L~~L~L~~n~l~~l----- 504 (929)
+++|+.|++++|.+++..+. ..+..+++|+.+++++|.+...+.++.. ..+++++.|.+.++.+...
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 301 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc
Confidence 67788888888877765331 2235667788888888754322222110 1344555555555443321
Q ss_pred -ChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc---CCCCCccEEEcCCCCCCCCCCCCCC
Q 045967 505 -PSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLPVPPS 580 (929)
Q Consensus 505 -p~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~Ls~N~l~~~~~~~~~ 580 (929)
+...... ++|+.|++++|.++.++. ..+++|++|++++|.++
T Consensus 302 l~~~~~~~--------------------------~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~-------- 347 (549)
T 2z81_A 302 LSTVYSLL--------------------------EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV-------- 347 (549)
T ss_dssp CCHHHHHS--------------------------TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC--------
T ss_pred chhhhhhc--------------------------ccceEEEeccCccccCCHHHHhcCccccEEEccCCccc--------
Confidence 1112223 345555555555544332 12455555666666555
Q ss_pred cccch---hhhccCCCCEEeCCCCcCcCCCc--cccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCC
Q 045967 581 REIIH---SICDIIALDVLDLSNNRLSGTIP--ECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKIND 655 (929)
Q Consensus 581 ~~~p~---~l~~l~~L~~L~Ls~N~l~~~ip--~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 655 (929)
+.+|. .++.+++|++|++++|++++..+ ..+..++.+ +.|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L--~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL--TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC--CEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC
T ss_pred cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC--CEEECCCCCCc-cCChhhcccccccEEECCCCCccc
Confidence 33322 24556666666666666653321 234555543 46667777666 346677788899999999999876
Q ss_pred CCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCc
Q 045967 656 VFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGT 735 (929)
Q Consensus 656 ~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~ 735 (929)
. |..+ .++|++|++++|++ ++.++
T Consensus 425 l-~~~~--~~~L~~L~Ls~N~l--------------~~~~~--------------------------------------- 448 (549)
T 2z81_A 425 V-KTCI--PQTLEVLDVSNNNL--------------DSFSL--------------------------------------- 448 (549)
T ss_dssp C-CTTS--CTTCSEEECCSSCC--------------SCCCC---------------------------------------
T ss_pred c-cchh--cCCceEEECCCCCh--------------hhhcc---------------------------------------
Confidence 5 3222 24566655555544 33210
Q ss_pred hhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCc
Q 045967 736 EIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIP 809 (929)
Q Consensus 736 ~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip 809 (929)
.++.|+.|+|++|+++ .+|. .+.+++|++|+|++|++++.+|..++.+++|+.|+|++|.+++..|
T Consensus 449 ------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 449 ------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 1567889999999998 6676 5679999999999999999999899999999999999999998876
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.7e-42 Score=411.95 Aligned_cols=435 Identities=19% Similarity=0.269 Sum_probs=281.4
Q ss_pred CcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCC------C------CCCCCCCCCCcEEEecCCCCCCCCccccccC
Q 045967 371 EMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLS------G------HIDEFPSKSLQNIYLSNNRLQGSIPSSIFEL 438 (929)
Q Consensus 371 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~------~------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 438 (929)
++.|+|++|.++|.+|..++++++|++|+|++|.+. + .+|...+..|+ +++++|.+.+.+|..+..+
T Consensus 83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGSCHH
T ss_pred EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhHHHH
Confidence 345566666667788899999999999999999762 2 11111233455 6666666666665554421
Q ss_pred -------------------CCCcEEecc--CCCCcCccchhhhhccCcccEEEccCCCCCCCcc----------------
Q 045967 439 -------------------VNLIDLQLD--SNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTT---------------- 481 (929)
Q Consensus 439 -------------------~~L~~L~Ls--~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------- 481 (929)
..++.+.+. .|++++ +| ..++++++|++|+|++|. +.+.
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip-~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VS-KAVMRLTKLRQFYMGNSP--FVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCcc-CC-HHHhcccCCCEEECcCCc--cccccccccccccccchhcc
Confidence 112222222 466767 44 567777777777777774 3342
Q ss_pred -ccccC---CCCCcceeeccccCCC-CCChhhhcccccceeccCCCc-CCC-CCchhhhccCC------CCccEEecccc
Q 045967 482 -FKIDI---PFPKFSYLSLFACNIS-AFPSFLRTQDKLFYLDLSESK-IDG-QIPRWISKIGK------DSLSYLNLSHN 548 (929)
Q Consensus 482 -~~~~~---~~~~L~~L~L~~n~l~-~lp~~l~~~~~L~~L~Ls~N~-l~~-~~p~~l~~~~~------~~L~~L~Ls~N 548 (929)
+|..+ .+++|++|++++|.+. .+|..++.+++|++|++++|+ +++ .+|..+ ..+ ++|++|++++|
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~--~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW--QALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH--HHHHHSGGGGTCCEEECCSS
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH--HhhhccccCCCCCEEECCCC
Confidence 22222 2444444444444433 445555555555555555555 554 455444 222 45555555555
Q ss_pred ccccccc----CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcc-cccceee
Q 045967 549 FITKMKQ----ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSP-WLSVSLN 623 (929)
Q Consensus 549 ~l~~~~~----~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~-ll~~~L~ 623 (929)
.++.++. ..+++|++|++++|.++ |.+| .+..+++|++|++++|+++ .+|..+..++. + +.|+
T Consensus 316 ~l~~ip~~~~l~~l~~L~~L~L~~N~l~--------g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L--~~L~ 383 (636)
T 4eco_A 316 NLKTFPVETSLQKMKKLGMLECLYNQLE--------GKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQV--ENLS 383 (636)
T ss_dssp CCSSCCCHHHHTTCTTCCEEECCSCCCE--------EECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTC--CEEE
T ss_pred cCCccCchhhhccCCCCCEEeCcCCcCc--------cchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccC--cEEE
Confidence 5553322 23445555555555555 4455 5555556666666666655 55555555554 3 3566
Q ss_pred ccCcccCCCCcccccCCC--CCcEEEccCCcCCCCCccccc-------CCCCCceeeccccccccccceeeCCCCcCccc
Q 045967 624 LNNNELEGANPQSLVNCT--KLEVLDIGNNKINDVFPYWLG-------NLPELRVLVLRSNKLRGSLRILDLSINNFSGY 694 (929)
Q Consensus 624 Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ 694 (929)
+++|.++ .+|..+..++ +|++|++++|++++.+|..+. .+++ |++|++++|.++ .
T Consensus 384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~--------------L~~L~Ls~N~l~-~ 447 (636)
T 4eco_A 384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN--------------VSSINLSNNQIS-K 447 (636)
T ss_dssp CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC--------------EEEEECCSSCCC-S
T ss_pred ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC--------------CCEEECcCCccC-c
Confidence 6666655 4454444433 566666666666655555554 3344 445566666666 7
Q ss_pred CCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhc--cccccce
Q 045967 695 LPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIG--KLHSLRL 772 (929)
Q Consensus 695 ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~--~L~~L~~ 772 (929)
+|..++..+++|+.|++++|.+..++...+..... ..+.+++|+.|+|++|+++ .+|..+. .+++|++
T Consensus 448 lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~---------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 517 (636)
T 4eco_A 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE---------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVG 517 (636)
T ss_dssp CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE---------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCE
T ss_pred CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc---------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCE
Confidence 88889999999999999999998776544332100 0112458999999999999 7888887 9999999
Q ss_pred eeccCccCCCCCCccccCcCCCCEeeC------CCCcCCCCCchhhccCCCCCEEECccCcCccCCCCCCCCCccccccc
Q 045967 773 LNLTHNHFTGKIPSSLGNLAKLESLDL------SSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSY 846 (929)
Q Consensus 773 L~Ls~N~l~~~ip~~l~~L~~L~~LdL------s~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~ 846 (929)
|+|++|++++ +|..+.++++|++|+| ++|++.+.+|..+.++++|++|++++|++ +.||.... ..+....+
T Consensus 518 L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~L 594 (636)
T 4eco_A 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDI 594 (636)
T ss_dssp EECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEEC
T ss_pred EECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEEC
Confidence 9999999997 8999999999999999 56889999999999999999999999999 89997633 56666677
Q ss_pred cCCcCCC
Q 045967 847 IGNLGLC 853 (929)
Q Consensus 847 ~gn~~Lc 853 (929)
.+|+-.|
T Consensus 595 s~N~l~~ 601 (636)
T 4eco_A 595 KDNPNIS 601 (636)
T ss_dssp CSCTTCE
T ss_pred cCCCCcc
Confidence 7787665
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-40 Score=406.11 Aligned_cols=454 Identities=18% Similarity=0.247 Sum_probs=255.8
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEec-cCccCCCCCccccCCC-CCCCE-----EEc----------cCCcCCC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHL-MHNNFSSHIPSSLSNL-VQLTC-----LDL----------SGNSFVG 342 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~L-s~n~l~~~~p~~l~~L-~~L~~-----L~L----------s~N~l~~ 342 (929)
.+++.|+|+++++.|.+|.+|++|++|++|+| ++|.++|..|-..... ..+.. +.. ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 56888888888888888888888888888888 7887776643221111 00000 000 0000000
Q ss_pred CCCC-CCCCCCCCEEeCCCCcCCCCCCCCCcEEEcC--CCCCCCCCCccccCCCCCcEEEcccccCCCC-----------
Q 045967 343 EIPD-IVNLTQVSFFDLSNNQLAGPVPSHEMLIRLN--NNSLSGTIPSWLFSLPLLEYVRLSDNQLSGH----------- 408 (929)
Q Consensus 343 ~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls--~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~----------- 408 (929)
..+. +...+.... +... -...++.+.+. .|.+++ +|..++++++|++|+|++|++++.
T Consensus 403 l~~~~l~~~~~~~~--i~~~-----~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~ 474 (876)
T 4ecn_A 403 LLQDAINRNPEMKP--IKKD-----SRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474 (876)
T ss_dssp HHHHHHHTCTTSCC--CCCC-----CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred HHHHHhhhCccccc--cccc-----cccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccc
Confidence 0000 000000000 0000 00002222222 377777 899999999999999999999982
Q ss_pred ------CCCC----CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCC-CcC-ccchhhhhccC-------cccEE
Q 045967 409 ------IDEF----PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNN-FSG-IAEPYMFAKLI-------KLKYL 469 (929)
Q Consensus 409 ------~~~~----~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~~~~~~~~~l~-------~L~~L 469 (929)
+|.. .+++|++|+|++|.+.+.+|..|.++++|+.|+|++|+ +++ .+| ..++.++ +|++|
T Consensus 475 n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP-~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK-ADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHH-HHHHHHHHCTTTTTTCCEE
T ss_pred ccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccch-HHHHhhhhcccccCCccEE
Confidence 4443 46777778887777777777777777777778877777 776 444 4555544 55555
Q ss_pred EccCCCCCCCccccccCCCCCcceeeccccCCCCCCh--hhhcccccceeccCCCcCCCCCchhhhccCCCCccEEeccc
Q 045967 470 YISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPS--FLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSH 547 (929)
Q Consensus 470 ~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~--~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~ 547 (929)
++++| +++.+|. .+..+++|+.|++++|.+. .+| .+ ..+++|+.|++++
T Consensus 554 ~Ls~N-------------------------~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~--~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 554 YMGYN-------------------------NLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AF--GTNVKLTDLKLDY 604 (876)
T ss_dssp ECCSS-------------------------CCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC--CTTSEESEEECCS
T ss_pred EeeCC-------------------------cCCccCChhhhhcCCCCCEEECCCCCcc-cch-hh--cCCCcceEEECcC
Confidence 55555 3334555 5666666666666666665 444 34 4455555555555
Q ss_pred cccccccc--CCCCC-ccEEEcCCCCCCCCCCCCCCcccchhhhccC--CCCEEeCCCCcCcCCCcccc---ccCccccc
Q 045967 548 NFITKMKQ--ISWKN-LGYLDLRSNLLQGPLPVPPSREIIHSICDII--ALDVLDLSNNRLSGTIPECI---GNFSPWLS 619 (929)
Q Consensus 548 N~l~~~~~--~~~~~-L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~--~L~~L~Ls~N~l~~~ip~~l---~~l~~ll~ 619 (929)
|.++.++. ..+++ |+.|++++|.++ .+|..+..+. +|+.|++++|++++.+|... ..+.....
T Consensus 605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~---------~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLK---------YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SCCSCCCTTSCEECTTCCEEECCSSCCC---------SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred CccccchHHHhhccccCCEEECcCCCCC---------cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 55442221 12233 444444444443 1222233222 25555555555544433211 11100001
Q ss_pred ceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHH
Q 045967 620 VSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARF 699 (929)
Q Consensus 620 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~ 699 (929)
+.|++++|.+....+..+..+++|+.|+|++|+++.+.+..+.... + .
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~------------------------------~--~ 723 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD------------------------------G--N 723 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT------------------------------S--C
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc------------------------------c--c
Confidence 2444444444422222223444455555555544422111111110 0 0
Q ss_pred HhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccC--
Q 045967 700 FEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTH-- 777 (929)
Q Consensus 700 ~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~-- 777 (929)
+.++++|+.|++++|.+..++.... ...+++|+.|+|++|++++ +|..++++++|+.|+|++
T Consensus 724 l~nl~~L~~L~Ls~N~L~~lp~~l~---------------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLTSLSDDFR---------------ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CTTGGGCCEEECCSSCCCCCCGGGS---------------TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred ccccCCccEEECCCCCCccchHHhh---------------hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 0112244444444444333321111 0126788999999999997 788899999999999976
Q ss_pred ----ccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccC
Q 045967 778 ----NHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGP 831 (929)
Q Consensus 778 ----N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~ 831 (929)
|++.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.|||++|++...
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 888899999999999999999999999 68888765 6899999999998643
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.6e-40 Score=393.49 Aligned_cols=467 Identities=19% Similarity=0.227 Sum_probs=312.2
Q ss_pred ceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCc
Q 045967 242 LQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIP 321 (929)
Q Consensus 242 L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p 321 (929)
.++++++++++++ +|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..|
T Consensus 33 ~~~l~ls~~~L~~-----------------ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 93 (562)
T 3a79_B 33 ESMVDYSNRNLTH-----------------VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF 93 (562)
T ss_dssp CCEEECTTSCCCS-----------------CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT
T ss_pred CcEEEcCCCCCcc-----------------CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH
Confidence 4789999998854 333332 789999999999998888899999999999999999998889
Q ss_pred cccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcc
Q 045967 322 SSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLS 401 (929)
Q Consensus 322 ~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 401 (929)
..|.++++|++|++++|+++. +|.. .+++|++|++++|++++. .+|..++++++|++|+++
T Consensus 94 ~~~~~l~~L~~L~Ls~N~l~~-lp~~-~l~~L~~L~Ls~N~l~~l-----------------~~p~~~~~l~~L~~L~L~ 154 (562)
T 3a79_B 94 HVFLFNQDLEYLDVSHNRLQN-ISCC-PMASLRHLDLSFNDFDVL-----------------PVCKEFGNLTKLTFLGLS 154 (562)
T ss_dssp TTTTTCTTCCEEECTTSCCCE-ECSC-CCTTCSEEECCSSCCSBC-----------------CCCGGGGGCTTCCEEEEE
T ss_pred HHhCCCCCCCEEECCCCcCCc-cCcc-ccccCCEEECCCCCcccc-----------------CchHhhcccCcccEEecC
Confidence 999999999999999999985 4444 889999999998887631 345789999999999999
Q ss_pred cccCCCCCCCCCCCCC--cEEEecCCCC--CCCCccccccCC-CCcEEeccCCCCcCccchhhhhccCcccEEEccCCCC
Q 045967 402 DNQLSGHIDEFPSKSL--QNIYLSNNRL--QGSIPSSIFELV-NLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSL 476 (929)
Q Consensus 402 ~N~l~~~~~~~~l~~L--~~L~Ls~N~l--~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 476 (929)
+|++++. ....+++| ++|++++|.+ ++..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|+.
T Consensus 155 ~n~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 233 (562)
T 3a79_B 155 AAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233 (562)
T ss_dssp CSBCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred CCccccC-chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence 9999852 22245555 9999999999 888888888765 2225688999988877666778889999999999842
Q ss_pred CCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhh-hccCCCCccEEeccccccccccc
Q 045967 477 SLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWI-SKIGKDSLSYLNLSHNFITKMKQ 555 (929)
Q Consensus 477 ~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l-~~~~~~~L~~L~Ls~N~l~~~~~ 555 (929)
... .++ .....+..+++|+.++++++.+.+.....+ ......+|++|++++|.+++..+
T Consensus 234 ~~~-~l~-------------------~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 293 (562)
T 3a79_B 234 NCQ-RLM-------------------TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293 (562)
T ss_dssp THH-HHH-------------------HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCC
T ss_pred ccc-hHH-------------------HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecccc
Confidence 110 000 011123333344444444333332111000 00112244444444444443332
Q ss_pred CCC-----CCccEE---EcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCc
Q 045967 556 ISW-----KNLGYL---DLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNN 627 (929)
Q Consensus 556 ~~~-----~~L~~L---~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N 627 (929)
..+ .+|+.| +++.+.+. +| +.....+....+|++|++++|.+..... ...++.+ +.|++++|
T Consensus 294 ~~~~~~~~~~L~~L~~~~~~~~~~~--~p----~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L--~~L~l~~n 363 (562)
T 3a79_B 294 REEFTYSETALKSLMIEHVKNQVFL--FS----KEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSF--TFLNFTQN 363 (562)
T ss_dssp CCCCCCCSCSCCEEEEEEEEECCCS--SC----HHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCC--CEEECCSS
T ss_pred chhhhcccccchheehhhcccceee--cC----hhhhhhhhccCcceEEEccCCCcccccC--ccCCCCc--eEEECCCC
Confidence 211 222222 22223221 00 1111111122456666666666542211 1223332 35666666
Q ss_pred ccCCCCcccccCCCCCcEEEccCCcCCCCC--cccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhc
Q 045967 628 ELEGANPQSLVNCTKLEVLDIGNNKINDVF--PYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNA 705 (929)
Q Consensus 628 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~ 705 (929)
.+++..|..+.++++|++|++++|++++.. |..+..+++|++|++++|+++ +.+|...+.
T Consensus 364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~--------------~~~~~~~~~---- 425 (562)
T 3a79_B 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN--------------SHAYDRTCA---- 425 (562)
T ss_dssp CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB--------------SCCSSCCCC----
T ss_pred ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC--------------CccChhhhc----
Confidence 666656666666666777777777666532 345666666666555554443 234422111
Q ss_pred ccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCC
Q 045967 706 MRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIP 785 (929)
Q Consensus 706 L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip 785 (929)
.+++|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|
T Consensus 426 ------------------------------------~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip 466 (562)
T 3a79_B 426 ------------------------------------WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIP 466 (562)
T ss_dssp ------------------------------------CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCC
T ss_pred ------------------------------------CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccC
Confidence 157889999999999988877665 79999999999999 788
Q ss_pred ccccCcCCCCEeeCCCCcCCCCCchh-hccCCCCCEEECccCcCccCCCCC
Q 045967 786 SSLGNLAKLESLDLSSNNLAGKIPKQ-LASLTSLSVLNISHNRLDGPIPQG 835 (929)
Q Consensus 786 ~~l~~L~~L~~LdLs~N~ls~~ip~~-l~~L~~L~~L~Ls~N~l~g~iP~~ 835 (929)
..+..+++|++|+|++|++++ +|.. +..+++|+.|++++|++.|.+|..
T Consensus 467 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp TTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred hhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 888899999999999999995 5655 999999999999999999988753
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6e-39 Score=388.32 Aligned_cols=504 Identities=19% Similarity=0.166 Sum_probs=340.9
Q ss_pred ccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCC
Q 045967 271 ELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVN 349 (929)
Q Consensus 271 ~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~ 349 (929)
.+|..+. +++++|||++|.+++..|.+|.++++|++|+|++|++++..|.+|.++++|++|+|++|++++..+. +.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 4554442 4789999999999987778899999999999999999988888899999999999999999987766 789
Q ss_pred CCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCC-CCCC--CCCCCcEEEecCCC
Q 045967 350 LTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGH-IDEF--PSKSLQNIYLSNNR 426 (929)
Q Consensus 350 L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~--~l~~L~~L~Ls~N~ 426 (929)
+++|++|++++|++++ ..+..|+++++|++|++++|.+++. .+.. .+++|++|++++|+
T Consensus 123 L~~L~~L~Ls~N~l~~------------------l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 123 LSSLQKLVAVETNLAS------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CTTCCEEECTTSCCCC------------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCcCCC------------------CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 9999999999988873 2334688999999999999998764 3333 67899999999999
Q ss_pred CCCCCccccccCCCCc----EEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCcccccc-C-CCCCcceeeccccC
Q 045967 427 LQGSIPSSIFELVNLI----DLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKID-I-PFPKFSYLSLFACN 500 (929)
Q Consensus 427 l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~-~~~~L~~L~L~~n~ 500 (929)
+++..+..+..+.+++ .++++.|.+..+.+ . ......++.+++.+|... ...... . .+..++...+..+.
T Consensus 185 l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~-~-~~~~~~~~~l~l~~n~~~--~~~~~~~~~~l~~l~~~~l~~~~ 260 (635)
T 4g8a_A 185 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-G-AFKEIRLHKLTLRNNFDS--LNVMKTCIQGLAGLEVHRLVLGE 260 (635)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT-T-TTTTCEEEEEEEESCCSS--HHHHHHHHHTTTTCEEEEEEEEC
T ss_pred ccccccccccchhhhhhhhhhhhcccCcccccCc-c-cccchhhhhhhhhccccc--ccccchhhcCCcccccccccccc
Confidence 9888888877665543 68888888877643 3 334456778888887322 211111 1 34444444333221
Q ss_pred C------C-CCChhhhcccccceeccCCCcCCCCC---chhhhccCCCCccEEeccccccccccc-CCCCCccEEEcCCC
Q 045967 501 I------S-AFPSFLRTQDKLFYLDLSESKIDGQI---PRWISKIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRSN 569 (929)
Q Consensus 501 l------~-~lp~~l~~~~~L~~L~Ls~N~l~~~~---p~~l~~~~~~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~Ls~N 569 (929)
. . .....+.....+...++..+...... +..+ ....+++.+++.++.+..... ..+..++.|++.+|
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 261 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF--NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 338 (635)
T ss_dssp CTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT--GGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC
T ss_pred cccccccccccccccccccchhhhhhhhhhhcccccchhhhh--hhhcccccccccccccccccccccchhhhhhhcccc
Confidence 1 1 11122333344444444333222111 1111 223445555555555444433 22334555555555
Q ss_pred CCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEcc
Q 045967 570 LLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIG 649 (929)
Q Consensus 570 ~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 649 (929)
.+.... ...+..|+.+++++|... ... ....+++|+.|+++
T Consensus 339 ~~~~~~-----------~~~l~~L~~l~l~~n~~~--------------------------~~~--~~~~l~~L~~L~ls 379 (635)
T 4g8a_A 339 KFGQFP-----------TLKLKSLKRLTFTSNKGG--------------------------NAF--SEVDLPSLEFLDLS 379 (635)
T ss_dssp EESSCC-----------CCBCTTCCEEEEESCCSC--------------------------CBC--CCCBCTTCCEEECC
T ss_pred cccCcC-----------cccchhhhhcccccccCC--------------------------CCc--ccccccccccchhh
Confidence 443110 012334444444444433 221 22334455555555
Q ss_pred CCcCCCC--CcccccCCCCCceeecccccccc---------ccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccc
Q 045967 650 NNKINDV--FPYWLGNLPELRVLVLRSNKLRG---------SLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRY 718 (929)
Q Consensus 650 ~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~---------~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~ 718 (929)
+|.+... .+..+..+.+|+.+++..|.+.+ .|+.++++.|+.....+...|..+.+++.++++.|.+..
T Consensus 380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 5544321 23333344555555555554332 155566666666666676778889999999999998876
Q ss_pred cCccccccceEEEecCchhhHhhhcccccEeecccccc-CcccchhhccccccceeeccCccCCCCCCccccCcCCCCEe
Q 045967 719 LGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGF-DGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESL 797 (929)
Q Consensus 719 l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l-~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L 797 (929)
.....+. .++.++.|++++|++ .+.+|..|..+++|++|+|++|++++.+|..|+++++|++|
T Consensus 460 ~~~~~~~----------------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 460 AFNGIFN----------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CCTTTTT----------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccc----------------cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 6544332 278899999999985 45678899999999999999999999999999999999999
Q ss_pred eCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCCCCC-C-CccccccccCCcCCCCC
Q 045967 798 DLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQGPQ-F-NTIQEDSYIGNLGLCGF 855 (929)
Q Consensus 798 dLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~~-~-~~~~~~~~~gn~~Lcg~ 855 (929)
+|++|+|++..|..|.++++|++||+++|+|++..|...+ + .++....+.|||.-|..
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999999999999999999999999999999998886532 2 35566678889888863
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-40 Score=389.16 Aligned_cols=432 Identities=21% Similarity=0.204 Sum_probs=295.2
Q ss_pred CCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCC
Q 045967 240 TKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSH 319 (929)
Q Consensus 240 ~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 319 (929)
++|++|+|++|.+.+.. |..+.++++|++|+|++|.+++..|..|+++++|++|+|++|+++ .
T Consensus 21 ~~L~~L~Ls~n~i~~~~----------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 83 (520)
T 2z7x_B 21 QKTTILNISQNYISELW----------------TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-K 83 (520)
T ss_dssp TTCSEEECCSSCCCCCC----------------HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-E
T ss_pred ccccEEECCCCcccccC----------------hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-e
Confidence 68999999999985543 345777899999999999999988999999999999999999999 5
Q ss_pred CccccCCCCCCCEEEccCCcCCC-CCCC-CCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCC--
Q 045967 320 IPSSLSNLVQLTCLDLSGNSFVG-EIPD-IVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLL-- 395 (929)
Q Consensus 320 ~p~~l~~L~~L~~L~Ls~N~l~~-~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L-- 395 (929)
+|.. .+++|++|++++|.+++ .+|. ++++++|++|++++|.+++ ..+..+++|
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---------------------~~~~~l~~L~L 140 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---------------------SSVLPIAHLNI 140 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---------------------GGGGGGTTSCE
T ss_pred cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---------------------hhcccccccee
Confidence 6766 89999999999999997 3554 9999999999999998863 234455555
Q ss_pred cEEEcccccC--CCCCCCC--CCC-CCcEEEecCCCCCCCCcc-ccccCCCCcEEeccCCC-------CcCccchhhhhc
Q 045967 396 EYVRLSDNQL--SGHIDEF--PSK-SLQNIYLSNNRLQGSIPS-SIFELVNLIDLQLDSNN-------FSGIAEPYMFAK 462 (929)
Q Consensus 396 ~~L~Ls~N~l--~~~~~~~--~l~-~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~-------l~~~~~~~~~~~ 462 (929)
++|++++|.+ .+..+.. .+. ....+++++|.+.+.+++ .+.++++|+.|++++|. +.+.++ .+..
T Consensus 141 ~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~ 218 (520)
T 2z7x_B 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQT 218 (520)
T ss_dssp EEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGG
T ss_pred eEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhcc
Confidence 7777777777 4444333 111 233566677776655443 45567778888887776 555432 5777
Q ss_pred cCcccEEEccCCCCCCCcccccc----CCCCCcceeeccccCCC-CCChhh-----hcccccceeccCCCcCCCCCc-hh
Q 045967 463 LIKLKYLYISHNSLSLGTTFKID----IPFPKFSYLSLFACNIS-AFPSFL-----RTQDKLFYLDLSESKIDGQIP-RW 531 (929)
Q Consensus 463 l~~L~~L~Ls~N~l~~~~~~~~~----~~~~~L~~L~L~~n~l~-~lp~~l-----~~~~~L~~L~Ls~N~l~~~~p-~~ 531 (929)
+++|+.|++++|.+. +..... ...++|++|++++|+++ .+|..+ ..+++|+.+++++|.+ .+| .+
T Consensus 219 l~~L~~L~l~~~~l~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~ 294 (520)
T 2z7x_B 219 NPKLSNLTLNNIETT--WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSY 294 (520)
T ss_dssp CTTCCEEEEEEEEEE--HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHH
T ss_pred ccchhhccccccccC--HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhh
Confidence 788888888777332 211110 01234555555555444 455544 5555555555555555 233 22
Q ss_pred hhc-cCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccc
Q 045967 532 ISK-IGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPEC 610 (929)
Q Consensus 532 l~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 610 (929)
+.. ....+|+.|++++|.+..... ...+++|++|++++|++++.+|..
T Consensus 295 ~~~~~~~~~L~~L~l~~n~l~~~~~-------------------------------~~~l~~L~~L~Ls~n~l~~~~~~~ 343 (520)
T 2z7x_B 295 IYEIFSNMNIKNFTVSGTRMVHMLC-------------------------------PSKISPFLHLDFSNNLLTDTVFEN 343 (520)
T ss_dssp HHHHHHTCCCSEEEEESSCCCCCCC-------------------------------CSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhcccccCceeEEEcCCCccccccc-------------------------------hhhCCcccEEEeECCccChhhhhh
Confidence 200 011334455554444433331 134455555555555555555555
Q ss_pred cccCcccccceeeccCcccCC--CCcccccCCCCCcEEEccCCcCCCCCcc-cccCCCCCceeeccccccccccceeeCC
Q 045967 611 IGNFSPWLSVSLNLNNNELEG--ANPQSLVNCTKLEVLDIGNNKINDVFPY-WLGNLPELRVLVLRSNKLRGSLRILDLS 687 (929)
Q Consensus 611 l~~l~~ll~~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~L~~LdLs 687 (929)
++.++.+ +.|++++|.+++ .+|..+.++++|++|++++|.+++.+|. .+..+++|+.|++++|+++
T Consensus 344 ~~~l~~L--~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~--------- 412 (520)
T 2z7x_B 344 CGHLTEL--ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT--------- 412 (520)
T ss_dssp CCCCSSC--CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC---------
T ss_pred hccCCCC--CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC---------
Confidence 5555542 356666666554 3456678889999999999999884554 4777888887776666554
Q ss_pred CCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccc
Q 045967 688 INNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKL 767 (929)
Q Consensus 688 ~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L 767 (929)
+.+|..+ .+.|+.|++++|+++ .+|..+..+
T Consensus 413 -----~~~~~~l-------------------------------------------~~~L~~L~Ls~N~l~-~ip~~~~~l 443 (520)
T 2z7x_B 413 -----DTIFRCL-------------------------------------------PPRIKVLDLHSNKIK-SIPKQVVKL 443 (520)
T ss_dssp -----GGGGGSC-------------------------------------------CTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred -----cchhhhh-------------------------------------------cccCCEEECCCCccc-ccchhhhcC
Confidence 3333210 247889999999999 788888899
Q ss_pred cccceeeccCccCCCCCCcc-ccCcCCCCEeeCCCCcCCCCCc
Q 045967 768 HSLRLLNLTHNHFTGKIPSS-LGNLAKLESLDLSSNNLAGKIP 809 (929)
Q Consensus 768 ~~L~~L~Ls~N~l~~~ip~~-l~~L~~L~~LdLs~N~ls~~ip 809 (929)
++|++|+|++|+++ .+|.. +..+++|++|++++|.+++..+
T Consensus 444 ~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 444 EALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999999999999 45654 9999999999999999998654
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.2e-39 Score=373.31 Aligned_cols=397 Identities=22% Similarity=0.292 Sum_probs=176.4
Q ss_pred CCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEe
Q 045967 278 NLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFD 357 (929)
Q Consensus 278 ~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~ 357 (929)
+.++|++|++++|.+ |.+|.+++++++|++|++++|.+.|.+|.+++++++|+.+++.+|.. .++++|+
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~----------~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD----------RQAHELE 77 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH----------HTCSEEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc----------cCCCEEE
Confidence 457888899998888 78888899999999999999988888888888888775555555432 3455566
Q ss_pred CCCCcCCC--CCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCcccc
Q 045967 358 LSNNQLAG--PVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSI 435 (929)
Q Consensus 358 Ls~n~l~~--~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 435 (929)
+++|.+++ .+|..++.|++++|.+++ +|.. .++|++|++++|++++.. .. .++|++|++++|++++ +| .+
T Consensus 78 l~~~~l~~lp~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~-~~-~~~L~~L~L~~n~l~~-lp-~~ 149 (454)
T 1jl5_A 78 LNNLGLSSLPELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-DL-PPLLEYLGVSNNQLEK-LP-EL 149 (454)
T ss_dssp CTTSCCSCCCSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-SC-CTTCCEEECCSSCCSS-CC-CC
T ss_pred ecCCccccCCCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc-CC-CCCCCEEECcCCCCCC-Cc-cc
Confidence 66655554 223334444444444444 3432 256666666666665421 11 1456666666666653 44 35
Q ss_pred ccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccc
Q 045967 436 FELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLF 515 (929)
Q Consensus 436 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~ 515 (929)
.++++|++|++++|++++. | .. ..+|++|++++| +++.+| .++.+++|+
T Consensus 150 ~~l~~L~~L~l~~N~l~~l-p-~~---~~~L~~L~L~~n-------------------------~l~~l~-~~~~l~~L~ 198 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKL-P-DL---PPSLEFIAAGNN-------------------------QLEELP-ELQNLPFLT 198 (454)
T ss_dssp TTCTTCCEEECCSSCCSCC-C-CC---CTTCCEEECCSS-------------------------CCSSCC-CCTTCTTCC
T ss_pred CCCCCCCEEECCCCcCccc-C-CC---cccccEEECcCC-------------------------cCCcCc-cccCCCCCC
Confidence 5566666666666655543 1 11 124444444444 333344 245556666
Q ss_pred eeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCE
Q 045967 516 YLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDV 595 (929)
Q Consensus 516 ~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~ 595 (929)
+|++++|.+.+ +|.. .++|++|++++|.++ .+| .++.+++|++
T Consensus 199 ~L~l~~N~l~~-l~~~--------------------------~~~L~~L~l~~n~l~---------~lp-~~~~l~~L~~ 241 (454)
T 1jl5_A 199 AIYADNNSLKK-LPDL--------------------------PLSLESIVAGNNILE---------ELP-ELQNLPFLTT 241 (454)
T ss_dssp EEECCSSCCSS-CCCC--------------------------CTTCCEEECCSSCCS---------SCC-CCTTCTTCCE
T ss_pred EEECCCCcCCc-CCCC--------------------------cCcccEEECcCCcCC---------ccc-ccCCCCCCCE
Confidence 66666666554 2221 124455555555443 222 2445556666
Q ss_pred EeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeecccc
Q 045967 596 LDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSN 675 (929)
Q Consensus 596 L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 675 (929)
|++++|++++ +|... .. + +.|++++|.+++. |.. .++|++|++++|++++. |.. .++|++|++++|
T Consensus 242 L~l~~N~l~~-l~~~~---~~-L-~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N 307 (454)
T 1jl5_A 242 IYADNNLLKT-LPDLP---PS-L-EALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSN 307 (454)
T ss_dssp EECCSSCCSS-CCSCC---TT-C-CEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSS
T ss_pred EECCCCcCCc-ccccc---cc-c-CEEECCCCccccc-Ccc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCC
Confidence 6666666553 33322 11 1 3555555555542 222 25566666666666553 111 145555555555
Q ss_pred cccc------ccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEe
Q 045967 676 KLRG------SLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTI 749 (929)
Q Consensus 676 ~l~~------~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 749 (929)
++++ .|++|++++|++++ +|.. +++|+.|
T Consensus 308 ~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~--------------------------------------------~~~L~~L 342 (454)
T 1jl5_A 308 EIRSLCDLPPSLEELNVSNNKLIE-LPAL--------------------------------------------PPRLERL 342 (454)
T ss_dssp CCSEECCCCTTCCEEECCSSCCSC-CCCC--------------------------------------------CTTCCEE
T ss_pred cCCcccCCcCcCCEEECCCCcccc-cccc--------------------------------------------CCcCCEE
Confidence 4442 13333333333332 2210 3456666
Q ss_pred eccccccCcccchhhccccccceeeccCccCCC--CCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCc
Q 045967 750 DFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTG--KIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNR 827 (929)
Q Consensus 750 dLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~--~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~ 827 (929)
++++|+++ .+|. .+++|++|+|++|++++ .+|.+++.+ +.|.+.|.+|.. +++|++|++++|+
T Consensus 343 ~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 343 IASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNP 407 (454)
T ss_dssp ECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC------------------------
T ss_pred ECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCc
Confidence 66666666 3444 35666666666666665 455544322 234555555542 3678888888888
Q ss_pred Ccc--CCCCC
Q 045967 828 LDG--PIPQG 835 (929)
Q Consensus 828 l~g--~iP~~ 835 (929)
++| .+|..
T Consensus 408 l~~~~~iP~s 417 (454)
T 1jl5_A 408 LREFPDIPES 417 (454)
T ss_dssp ----------
T ss_pred CCccccchhh
Confidence 887 67753
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.9e-37 Score=367.21 Aligned_cols=451 Identities=19% Similarity=0.195 Sum_probs=318.7
Q ss_pred CCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEe
Q 045967 279 LKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFD 357 (929)
Q Consensus 279 l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~ 357 (929)
+...+++++++|++++ +|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|. +.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3445899999999986 787665 7999999999999988888999999999999999999887666 88888888888
Q ss_pred CCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCC-CCC--CCCCCcEEEecCCCCCCCCccc
Q 045967 358 LSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHI-DEF--PSKSLQNIYLSNNRLQGSIPSS 434 (929)
Q Consensus 358 Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~--~l~~L~~L~Ls~N~l~~~~p~~ 434 (929)
+++|.++ .+|.. .+++|++|++++|++++.. |.. .+++|++|++++|++++. .
T Consensus 107 Ls~N~l~-------------------~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~ 162 (562)
T 3a79_B 107 VSHNRLQ-------------------NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D 162 (562)
T ss_dssp CTTSCCC-------------------EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T
T ss_pred CCCCcCC-------------------ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---c
Confidence 8888876 34444 6778888888888877532 222 566777777777776642 3
Q ss_pred cccCCCC--cEEeccCCCC--cCccchhhhhccC-cccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCC-hhh
Q 045967 435 IFELVNL--IDLQLDSNNF--SGIAEPYMFAKLI-KLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFP-SFL 508 (929)
Q Consensus 435 l~~l~~L--~~L~Ls~N~l--~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l 508 (929)
+..+++| ++|++++|++ ++..+ ..+..+. ..-.+++++|.+ .+ .++ ..+
T Consensus 163 ~~~l~~L~L~~L~L~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~--~~----------------------~~~~~~~ 217 (562)
T 3a79_B 163 LLPVAHLHLSCILLDLVSYHIKGGET-ESLQIPNTTVLHLVFHPNSL--FS----------------------VQVNMSV 217 (562)
T ss_dssp TGGGTTSCEEEEEEEESSCCCCSSSC-CEEEECCEEEEEEEECSSSC--CC----------------------CCCEEEE
T ss_pred hhhhhhceeeEEEeecccccccccCc-ccccccCcceEEEEecCccc--hh----------------------hhhhhcc
Confidence 4444444 7777777766 55544 3444433 111334455522 11 122 234
Q ss_pred hcccccceeccCCCcCCC----CCchhhhccCCCCccEEeccccccccccc------CCCCCccEEEcCCCCCCCCCCCC
Q 045967 509 RTQDKLFYLDLSESKIDG----QIPRWISKIGKDSLSYLNLSHNFITKMKQ------ISWKNLGYLDLRSNLLQGPLPVP 578 (929)
Q Consensus 509 ~~~~~L~~L~Ls~N~l~~----~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~------~~~~~L~~L~Ls~N~l~~~~~~~ 578 (929)
..+++|+.+++++|.... .....+ ..++.|+.+++.++.+.+... ...++|++|++++|.++
T Consensus 218 ~~l~~L~~L~l~~n~~~~~~l~~~~~~l--~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~------ 289 (562)
T 3a79_B 218 NALGHLQLSNIKLNDENCQRLMTFLSEL--TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT------ 289 (562)
T ss_dssp SSEEEEEEEEEECCSTTHHHHHHHHHHH--HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC------
T ss_pred cccceEEEecccccccccchHHHHHHHH--hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee------
Confidence 567788888888875210 011233 567888888888887765432 23358999999999998
Q ss_pred CCcccchhh-----hccCCCCEEeCCCCcCcCCCcc-ccccC---cccccceeeccCcccCCCCcccccCCCCCcEEEcc
Q 045967 579 PSREIIHSI-----CDIIALDVLDLSNNRLSGTIPE-CIGNF---SPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIG 649 (929)
Q Consensus 579 ~~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~ip~-~l~~l---~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 649 (929)
+.+|..+ ..++.|+.++++.|.+ .+|. .+... .. .+.|++++|.+.... ....+++|++|+++
T Consensus 290 --~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~--L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~ 361 (562)
T 3a79_B 290 --ERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMN--IKMLSISDTPFIHMV--CPPSPSSFTFLNFT 361 (562)
T ss_dssp --SCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCC--CSEEEEESSCCCCCC--CCSSCCCCCEEECC
T ss_pred --ccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCc--ceEEEccCCCccccc--CccCCCCceEEECC
Confidence 4555555 5666677777777766 4452 22211 12 258889998876442 12678899999999
Q ss_pred CCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceE
Q 045967 650 NNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVV 729 (929)
Q Consensus 650 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~ 729 (929)
+|++++.+|.++.++++|++|++++|+++ .++... .
T Consensus 362 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---------------~~~~~~-~---------------------------- 397 (562)
T 3a79_B 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLK---------------NFFKVA-L---------------------------- 397 (562)
T ss_dssp SSCCCTTTTTTCCSCSSCCEEECCSSCCC---------------BTTHHH-H----------------------------
T ss_pred CCccccchhhhhcccCCCCEEECCCCCcC---------------Ccccch-h----------------------------
Confidence 99999888888888999888877777665 222110 0
Q ss_pred EEecCchhhHhhhcccccEeeccccccCcccch-hhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCC
Q 045967 730 VTLKGTEIELQKILTVFTTIDFSSNGFDGEISQ-VIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKI 808 (929)
Q Consensus 730 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~-~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~i 808 (929)
....+++|+.|++++|++++.+|. .+..+++|++|+|++|++++.+|..+. ++|++|+|++|+++ .+
T Consensus 398 ---------~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~i 465 (562)
T 3a79_B 398 ---------MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SI 465 (562)
T ss_dssp ---------TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CC
T ss_pred ---------hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-cc
Confidence 001267899999999999985665 588999999999999999988887665 79999999999999 68
Q ss_pred chhhccCCCCCEEECccCcCccCCCCC--CCCCccccccccCCcCCCC
Q 045967 809 PKQLASLTSLSVLNISHNRLDGPIPQG--PQFNTIQEDSYIGNLGLCG 854 (929)
Q Consensus 809 p~~l~~L~~L~~L~Ls~N~l~g~iP~~--~~~~~~~~~~~~gn~~Lcg 854 (929)
|..+..+++|++|++++|+++ .+|.. ..+..+....+.||+.-|.
T Consensus 466 p~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 466 PKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred ChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 887889999999999999998 57764 2344555566778877664
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-36 Score=351.58 Aligned_cols=365 Identities=20% Similarity=0.230 Sum_probs=280.5
Q ss_pred CcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC---CCCCCcEEEecCCCCCCCCccccccCCCCcEEecc
Q 045967 371 EMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF---PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLD 447 (929)
Q Consensus 371 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 447 (929)
+++|++++|.+++..|..++++++|++|++++|.+.+.++.. .+++|++|++++|++++..|..|.++++|++|+++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence 444455555555566778889999999999999887665442 67889999999998887778888888999999999
Q ss_pred CCCCcCccch-hhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChh-hhcccccceeccCCCcCC
Q 045967 448 SNNFSGIAEP-YMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSF-LRTQDKLFYLDLSESKID 525 (929)
Q Consensus 448 ~N~l~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~L~Ls~N~l~ 525 (929)
+|++++..+. ..+..+++|++|++++|++. + ..|.. +..+++|++|++++|.+.
T Consensus 112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~--~----------------------~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK--K----------------------IQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TSCCBTHHHHSSTTTTCTTCCEEECCSSBCC--S----------------------CCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCCCCccccCcccccCcccCCEEECCCCccC--c----------------------cCcccccCCCCcccEEeCCCCccc
Confidence 9988875431 23777888888888888442 1 12333 677888888888888888
Q ss_pred CCCchhhhccCCCCccEEecccccccccccC-----------CCCCccEEEcCCCCCCCCCCCCCCcccchhhhcc---C
Q 045967 526 GQIPRWISKIGKDSLSYLNLSHNFITKMKQI-----------SWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDI---I 591 (929)
Q Consensus 526 ~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~-----------~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l---~ 591 (929)
+..+..+......+|+.|++++|.+.+..+. .+++|++|++++|.++ +..|..+... .
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--------~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK--------ESMAKRFFDAIAGT 239 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC--------HHHHHHHHHHTTTC
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc--------ccchhhhhcccccc
Confidence 8777776433346788888888888876642 3367888899988887 6677766654 7
Q ss_pred CCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccC--CCCCcEEEccCCcCCCCCcccccCCCCCce
Q 045967 592 ALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVN--CTKLEVLDIGNNKINDVFPYWLGNLPELRV 669 (929)
Q Consensus 592 ~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 669 (929)
+|+.|++++|.+.+... ..+.+.+..+..+.+ .++|++|++++|++++..|.+++.+++|++
T Consensus 240 ~L~~L~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 303 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSF----------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303 (455)
T ss_dssp CEEEEECTTCTTTSCCT----------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ceeeEeecccccccccc----------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCE
Confidence 88888888887664321 112222222223332 468999999999999999999999999998
Q ss_pred eeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEe
Q 045967 670 LVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTI 749 (929)
Q Consensus 670 L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 749 (929)
|++++|+++ +..|. .+. .+++|+.|
T Consensus 304 L~Ls~n~l~--------------~~~~~-~~~----------------------------------------~l~~L~~L 328 (455)
T 3v47_A 304 LTLAQNEIN--------------KIDDN-AFW----------------------------------------GLTHLLKL 328 (455)
T ss_dssp EECTTSCCC--------------EECTT-TTT----------------------------------------TCTTCCEE
T ss_pred EECCCCccc--------------ccChh-Hhc----------------------------------------CcccCCEE
Confidence 877777664 22221 111 15788999
Q ss_pred eccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCc
Q 045967 750 DFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLD 829 (929)
Q Consensus 750 dLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~ 829 (929)
+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|+++
T Consensus 329 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp ECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 99999999888999999999999999999999999999999999999999999999877778899999999999999999
Q ss_pred cCCCCCCCC
Q 045967 830 GPIPQGPQF 838 (929)
Q Consensus 830 g~iP~~~~~ 838 (929)
|.+|....+
T Consensus 409 ~~~~~~~~l 417 (455)
T 3v47_A 409 CSCPRIDYL 417 (455)
T ss_dssp CCTTTTHHH
T ss_pred cCCCcchHH
Confidence 999965433
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-36 Score=350.48 Aligned_cols=356 Identities=23% Similarity=0.340 Sum_probs=272.9
Q ss_pred CCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCC-----------
Q 045967 238 NMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQL----------- 306 (929)
Q Consensus 238 ~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L----------- 306 (929)
+.++|++|++++|++ |.+|++++++++|++|++++|.+.|.+|..++++++|
T Consensus 9 ~~~~L~~L~l~~n~l-----------------~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~ 71 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-----------------TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71 (454)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHH
T ss_pred ccccchhhhcccCch-----------------hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhcc
Confidence 457899999999986 4566778888999999999999999999999998865
Q ss_pred --CEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCC--CCCCCCcEEEcCCCCCC
Q 045967 307 --TLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAG--PVPSHEMLIRLNNNSLS 382 (929)
Q Consensus 307 --~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~--~~p~~L~~L~Ls~N~l~ 382 (929)
++|++++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|++++ ..|..|++|++++|.++
T Consensus 72 ~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~--~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 72 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 144 (454)
T ss_dssp TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS
T ss_pred CCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc--cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC
Confidence 999999999986 4442 4789999999999998 5542 4899999999999987 45567999999999999
Q ss_pred CCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhc
Q 045967 383 GTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAK 462 (929)
Q Consensus 383 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 462 (929)
+ +| .++++++|++|++++|++++ +|.. ..+|++|++++|++++ +| .+.++++|++|++++|++++... .
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~-~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~-----~ 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL-PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD-----L 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC-----C
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC-cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC-----C
Confidence 7 77 59999999999999999996 4433 4699999999999986 66 69999999999999999998522 2
Q ss_pred cCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccE
Q 045967 463 LIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSY 542 (929)
Q Consensus 463 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~ 542 (929)
.++|++|++++|.+. .++....+++|++|++++|+++.+|.. .++|++|++++|++.+ +|.. .++|++
T Consensus 214 ~~~L~~L~l~~n~l~---~lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~-----~~~L~~ 281 (454)
T 1jl5_A 214 PLSLESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL-----PQSLTF 281 (454)
T ss_dssp CTTCCEEECCSSCCS---SCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC-----CTTCCE
T ss_pred cCcccEEECcCCcCC---cccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc-----cCcCCE
Confidence 358999999999654 444434789999999999999988864 4789999999999986 4543 378999
Q ss_pred EecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhcc-CCCCEEeCCCCcCcCCCccccccCcccccce
Q 045967 543 LNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDI-IALDVLDLSNNRLSGTIPECIGNFSPWLSVS 621 (929)
Q Consensus 543 L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l-~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~ 621 (929)
|++++|.++++... .++|++|++++|.+++ + ..+ ++|++|++++|++++ +|..+ +. + +.
T Consensus 282 L~ls~N~l~~l~~~-~~~L~~L~l~~N~l~~---------i----~~~~~~L~~L~Ls~N~l~~-lp~~~---~~-L-~~ 341 (454)
T 1jl5_A 282 LDVSENIFSGLSEL-PPNLYYLNASSNEIRS---------L----CDLPPSLEELNVSNNKLIE-LPALP---PR-L-ER 341 (454)
T ss_dssp EECCSSCCSEESCC-CTTCCEEECCSSCCSE---------E----CCCCTTCCEEECCSSCCSC-CCCCC---TT-C-CE
T ss_pred EECcCCccCcccCc-CCcCCEEECcCCcCCc---------c----cCCcCcCCEEECCCCcccc-ccccC---Cc-C-CE
Confidence 99999999986532 3789999999999972 2 223 489999999999995 67653 33 2 58
Q ss_pred eeccCcccCCCCcccccCCCCCcEEEccCCcCCC--CCcccccCC
Q 045967 622 LNLNNNELEGANPQSLVNCTKLEVLDIGNNKIND--VFPYWLGNL 664 (929)
Q Consensus 622 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l 664 (929)
|++++|++++. |. .+++|++|++++|++++ .+|.++..+
T Consensus 342 L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 342 LIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp EECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred EECCCCccccc-cc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 99999999964 54 47899999999999999 667766544
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-37 Score=341.16 Aligned_cols=292 Identities=26% Similarity=0.383 Sum_probs=210.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCcccccccccccCCCCCCCCCCC--CcccccCCCCcccccCchhhhhcCCCCceEEEc
Q 045967 170 HCPHEQSSALIQFKQLFSFDGDSSFVCQHSYPKMISWKKDTNYCS--WDGLTCDMATVSLETPVFQALVQNMTKLQVLSL 247 (929)
Q Consensus 170 ~c~~~e~~aLl~~k~~l~~~~~~~~~~~~~~~~l~sW~~~~~~C~--W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~L 247 (929)
.|.++|++||++||+++.++. .+++|..+.+||. |.||+|+..+. ..+|+.|+|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-----------~l~~W~~~~~~C~~~w~gv~C~~~~~-------------~~~l~~L~L 57 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-----------TLSSWLPTTDCCNRTWLGVLCDTDTQ-------------TYRVNNLDL 57 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-----------GGTTCCTTSCTTTTCSTTEEECCSSS-------------CCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-----------cccCCCCCCCCCcCCCcceEeCCCCC-------------CceEEEEEC
Confidence 599999999999999996532 5789988889999 99999986421 137999999
Q ss_pred CCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCC-CCCCCCCccccCCCCCCCEEeccCccCCCCCccccCC
Q 045967 248 ASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGY-SQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSN 326 (929)
Q Consensus 248 s~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~-n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 326 (929)
+++.+.+. ..+|..++++++|++|++++ |.+.+.+|..|+++++|++|+|++|.+++.+|..+.+
T Consensus 58 ~~~~l~~~--------------~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 58 SGLNLPKP--------------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp ECCCCSSC--------------EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred CCCCccCC--------------cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 99998540 04556677789999999995 9999999999999999999999999999999999999
Q ss_pred CCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCC-CCcEEEccccc
Q 045967 327 LVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLP-LLEYVRLSDNQ 404 (929)
Q Consensus 327 L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~ 404 (929)
+++|++|++++|.+++.+|. +.++++|++|++++|.+++.+| ..+++++ +|++|++++|+
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p------------------~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP------------------DSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC------------------GGGGCCCTTCCEEECCSSE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC------------------HHHhhhhhcCcEEECcCCe
Confidence 99999999999999988877 8999999999999998875444 4444444 55555555555
Q ss_pred CCCCCCCC--CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccc
Q 045967 405 LSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTF 482 (929)
Q Consensus 405 l~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 482 (929)
+++.++.. .++ |++|++++|.+++..|..+..+++|+.|++++|++++..+ .+..+++|++|++++| .+.+.+
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N--~l~~~~ 260 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNN--RIYGTL 260 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSS--CCEECC
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCC--cccCcC
Confidence 55444433 222 5555555555555555555555555555555555554433 2445555555555555 233333
Q ss_pred cccC-CCCCcceeeccccCCC-CCChhhhcccccceeccCCCc
Q 045967 483 KIDI-PFPKFSYLSLFACNIS-AFPSFLRTQDKLFYLDLSESK 523 (929)
Q Consensus 483 ~~~~-~~~~L~~L~L~~n~l~-~lp~~l~~~~~L~~L~Ls~N~ 523 (929)
+..+ .+++|+.|++++|+++ .+|.. ..+++|+.+++++|.
T Consensus 261 p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 261 PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 3333 4555555555555555 55654 778888999999887
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-35 Score=344.35 Aligned_cols=378 Identities=19% Similarity=0.192 Sum_probs=263.0
Q ss_pred CCCCCcc--cccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECC
Q 045967 211 NYCSWDG--LTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLG 288 (929)
Q Consensus 211 ~~C~W~G--v~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls 288 (929)
..|.|.+ |.|+..++. .+|. + .++|++|+|++|.+++. .|..++++++|++|+++
T Consensus 6 ~~c~~~~~~~~c~~~~l~----~lp~-l--~~~l~~L~Ls~n~i~~~----------------~~~~~~~l~~L~~L~L~ 62 (455)
T 3v47_A 6 SECSVIGYNAICINRGLH----QVPE-L--PAHVNYVDLSLNSIAEL----------------NETSFSRLQDLQFLKVE 62 (455)
T ss_dssp -CCEEETTEEECCSSCCS----SCCC-C--CTTCCEEECCSSCCCEE----------------CTTTTSSCTTCCEEECC
T ss_pred ceeEEEccccCcCCCCcc----cCCC-C--CCccCEEEecCCccCcC----------------ChhHhccCccccEEECc
Confidence 4566666 788755421 1232 1 26899999999988543 34567778999999999
Q ss_pred CCCCCCCC-ccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC---CCCCCCCCEEeCCCCcCC
Q 045967 289 YSQFVGPV-PASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD---IVNLTQVSFFDLSNNQLA 364 (929)
Q Consensus 289 ~n~l~~~l-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~---l~~L~~L~~L~Ls~n~l~ 364 (929)
+|.+.+.+ |..|.++++|++|+|++|++++..|..|+++++|++|++++|.+++.++. +.++++|++|++++|.++
T Consensus 63 ~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 142 (455)
T 3v47_A 63 QQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142 (455)
T ss_dssp CCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC
T ss_pred CCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC
Confidence 99887665 56789999999999999999988888999999999999999999875433 788889999988888877
Q ss_pred CCCCCCCcEEEcCCCCCCCCCCcc-ccCCCCCcEEEcccccCCCCCCCC----CCCCCcEEEecCCCCCCCCccc-----
Q 045967 365 GPVPSHEMLIRLNNNSLSGTIPSW-LFSLPLLEYVRLSDNQLSGHIDEF----PSKSLQNIYLSNNRLQGSIPSS----- 434 (929)
Q Consensus 365 ~~~p~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~----~l~~L~~L~Ls~N~l~~~~p~~----- 434 (929)
+. .|.. +.++++|++|++++|.+++..+.. ...+|+.|++++|.+.+..+..
T Consensus 143 ~~------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (455)
T 3v47_A 143 KI------------------QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204 (455)
T ss_dssp SC------------------CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred cc------------------CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccc
Confidence 43 3444 788899999999999988776654 3368899999999988655443
Q ss_pred ---cccCCCCcEEeccCCCCcCccchhhhhcc---CcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCC-Chh
Q 045967 435 ---IFELVNLIDLQLDSNNFSGIAEPYMFAKL---IKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAF-PSF 507 (929)
Q Consensus 435 ---l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~ 507 (929)
+..+++|++|++++|++++..+ ..+... ++|+.|++++|.+. +... ..+.+... +..
T Consensus 205 ~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~--~~~~-------------~~~~~~~~~~~~ 268 (455)
T 3v47_A 205 CGNPFKNTSITTLDLSGNGFKESMA-KRFFDAIAGTKIQSLILSNSYNM--GSSF-------------GHTNFKDPDNFT 268 (455)
T ss_dssp HCCTTTTCEEEEEECTTSCCCHHHH-HHHHHHTTTCCEEEEECTTCTTT--SCCT-------------TCCSSCCCCTTT
T ss_pred cccccccceeeeEecCCCcccccch-hhhhccccccceeeEeecccccc--cccc-------------chhhhccCcccc
Confidence 3356789999999999988766 455444 78888888888432 1100 00011000 001
Q ss_pred hh--cccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccch
Q 045967 508 LR--TQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIH 585 (929)
Q Consensus 508 l~--~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~ 585 (929)
+. ..++|++|++++|.+.+..|..+ ..++ +|++|++++|.++ +..+.
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~---------------------~L~~L~Ls~n~l~--------~~~~~ 317 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVF--SHFT---------------------DLEQLTLAQNEIN--------KIDDN 317 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTT--TTCT---------------------TCCEEECTTSCCC--------EECTT
T ss_pred cccccccCceEEEecCccccccchhhc--ccCC---------------------CCCEEECCCCccc--------ccChh
Confidence 11 12455555555555555545444 3444 4555555555554 33445
Q ss_pred hhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCC
Q 045967 586 SICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLP 665 (929)
Q Consensus 586 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 665 (929)
.+..+++|++|++++|++++..|..+..++.+ +.|++++|.+++..|..+.++++|++|++++|++++..+..+..++
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL--EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCTTC--CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcccC--CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 56666777777777777766666666666653 4677777777777777888888899999999988887777778888
Q ss_pred CCceeeccccccc
Q 045967 666 ELRVLVLRSNKLR 678 (929)
Q Consensus 666 ~L~~L~Ls~N~l~ 678 (929)
+|++|++++|+++
T Consensus 396 ~L~~L~l~~N~l~ 408 (455)
T 3v47_A 396 SLQKIWLHTNPWD 408 (455)
T ss_dssp TCCEEECCSSCBC
T ss_pred cccEEEccCCCcc
Confidence 8887766666554
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.4e-35 Score=338.96 Aligned_cols=352 Identities=20% Similarity=0.198 Sum_probs=195.3
Q ss_pred ccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCC
Q 045967 275 SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVS 354 (929)
Q Consensus 275 ~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~ 354 (929)
.++++++|++|++++|.+++ +| .++.+++|++|++++|++++. | ++.+++|++|++++|.+++. + ++++++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-cCCCCcCC
Confidence 44555666666666666665 34 466666666666666666653 2 56666666666666666653 2 56666666
Q ss_pred EEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccc
Q 045967 355 FFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSS 434 (929)
Q Consensus 355 ~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 434 (929)
+|++++|.+++ +| ++++++|++|++++|++++. +...+++|++|++++|+..+.+ .
T Consensus 110 ~L~L~~N~l~~-------------------l~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~ 165 (457)
T 3bz5_A 110 YLNCDTNKLTK-------------------LD--VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--D 165 (457)
T ss_dssp EEECCSSCCSC-------------------CC--CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--C
T ss_pred EEECCCCcCCe-------------------ec--CCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCccccc--c
Confidence 66666665552 11 33444444444444444432 2223444444444444333232 2
Q ss_pred cccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhccccc
Q 045967 435 IFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKL 514 (929)
Q Consensus 435 l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L 514 (929)
+..+++|++|++++|++++. + +..+++|+.|++++|++... ....+++|+.|++++|+++.+| +..+++|
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l-~---l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L 235 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITEL-D---VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTEID--VTPLTQL 235 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCC-C---CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred cccCCcCCEEECCCCcccee-c---cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccccC--ccccCCC
Confidence 34444444444444444443 1 34444444444444432211 0113444444444444444554 5556666
Q ss_pred ceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCC
Q 045967 515 FYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALD 594 (929)
Q Consensus 515 ~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~ 594 (929)
++|++++|++++..+ ..+++|+.|++++| +|+.+++++|.+. +.+| ++.+++|+
T Consensus 236 ~~L~l~~N~l~~~~~-----~~l~~L~~L~l~~n-----------~L~~L~l~~n~~~--------~~~~--~~~l~~L~ 289 (457)
T 3bz5_A 236 TYFDCSVNPLTELDV-----STLSKLTTLHCIQT-----------DLLEIDLTHNTQL--------IYFQ--AEGCRKIK 289 (457)
T ss_dssp SEEECCSSCCSCCCC-----TTCTTCCEEECTTC-----------CCSCCCCTTCTTC--------CEEE--CTTCTTCC
T ss_pred CEEEeeCCcCCCcCH-----HHCCCCCEEeccCC-----------CCCEEECCCCccC--------Cccc--ccccccCC
Confidence 666666666665432 23345555555543 2334444444444 3333 23445555
Q ss_pred EEeCCCCcCcCCCcccc--------ccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCC
Q 045967 595 VLDLSNNRLSGTIPECI--------GNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPE 666 (929)
Q Consensus 595 ~L~Ls~N~l~~~ip~~l--------~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 666 (929)
.|++++|...+.+|... ..++. + +.|++++|++++. .+.++++|+.|++++|++++. +.
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~-L-~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~ 356 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPK-L-VYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SS 356 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTT-C-CEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TT
T ss_pred EEECCCCcccceeccCCCcceEechhhccc-C-CEEECCCCccccc---ccccCCcCcEEECCCCCCCCc--------cc
Confidence 55555555444444321 11222 2 4788999999885 388889999999999998863 56
Q ss_pred Cceeeccccccccc-----cceeeCCCCcCcccCCHHHHhhhhcc
Q 045967 667 LRVLVLRSNKLRGS-----LRILDLSINNFSGYLPARFFEKLNAM 706 (929)
Q Consensus 667 L~~L~Ls~N~l~~~-----L~~LdLs~N~l~g~ip~~~~~~l~~L 706 (929)
|..|++++|.+.|. ++.+++++|+++|.+|..++....++
T Consensus 357 L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~ 401 (457)
T 3bz5_A 357 VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401 (457)
T ss_dssp GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBCTTSCC
T ss_pred cccccccCCcEEecceeeecCccccccCcEEEEcChhHhcccCce
Confidence 77778888888764 88899999999999998765544444
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.5e-35 Score=338.88 Aligned_cols=364 Identities=17% Similarity=0.196 Sum_probs=227.4
Q ss_pred CCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCC
Q 045967 292 FVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHE 371 (929)
Q Consensus 292 l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L 371 (929)
..+..+..++++++|++|++++|.+++. | .++.+++|++|++++|++++. | ++++++|++|++++|.+++
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~l~~------ 99 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNKLTN------ 99 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSC------
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCCCce------
Confidence 3444566788889999999999998864 5 688899999999999998874 3 7888888888888887762
Q ss_pred cEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCC
Q 045967 372 MLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNF 451 (929)
Q Consensus 372 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 451 (929)
++ ++++++|++|++++|++++. +...+++|++|++++|++++. .+.++++|++|++++|+.
T Consensus 100 -------------~~--~~~l~~L~~L~L~~N~l~~l-~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 100 -------------LD--VTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKK 160 (457)
T ss_dssp -------------CC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSC
T ss_pred -------------ee--cCCCCcCCEEECCCCcCCee-cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCc
Confidence 22 67788888888888888763 444677788888888887753 266777777777777755
Q ss_pred cCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchh
Q 045967 452 SGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRW 531 (929)
Q Consensus 452 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~ 531 (929)
.+.+ .+..+++|++|++++|++. .+| +..+++|+.|++++|.+++. .
T Consensus 161 ~~~~---~~~~l~~L~~L~ls~n~l~-------------------------~l~--l~~l~~L~~L~l~~N~l~~~---~ 207 (457)
T 3bz5_A 161 ITKL---DVTPQTQLTTLDCSFNKIT-------------------------ELD--VSQNKLLNRLNCDTNNITKL---D 207 (457)
T ss_dssp CCCC---CCTTCTTCCEEECCSSCCC-------------------------CCC--CTTCTTCCEEECCSSCCSCC---C
T ss_pred cccc---ccccCCcCCEEECCCCccc-------------------------eec--cccCCCCCEEECcCCcCCee---c
Confidence 4443 2556666777777666432 232 34445555555555555543 1
Q ss_pred hhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCcccc
Q 045967 532 ISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECI 611 (929)
Q Consensus 532 l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l 611 (929)
+ ..+++|++|++++|++++++...+++|++|++++|++++. | +..+++|+.|++++|++.
T Consensus 208 l--~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~---------~--~~~l~~L~~L~l~~n~L~------- 267 (457)
T 3bz5_A 208 L--NQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTEL---------D--VSTLSKLTTLHCIQTDLL------- 267 (457)
T ss_dssp C--TTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC---------C--CTTCTTCCEEECTTCCCS-------
T ss_pred c--ccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCc---------C--HHHCCCCCEEeccCCCCC-------
Confidence 2 3444555555555555444333344444555555544411 1 223344445544444321
Q ss_pred ccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcC
Q 045967 612 GNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNF 691 (929)
Q Consensus 612 ~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l 691 (929)
.+++++|.+.+.+| +.++++|+.|++++|...+.+|. ..++|+.|++++
T Consensus 268 ---------~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~----------------- 316 (457)
T 3bz5_A 268 ---------EIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQ----------------- 316 (457)
T ss_dssp ---------CCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT-----------------
T ss_pred ---------EEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhh-----------------
Confidence 33444444443333 23445555555555554444332 122233222222
Q ss_pred cccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccc
Q 045967 692 SGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR 771 (929)
Q Consensus 692 ~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~ 771 (929)
.++|+.|++++|++++. + ++++++|+
T Consensus 317 ---------------------------------------------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~ 342 (457)
T 3bz5_A 317 ---------------------------------------------------NPKLVYLYLNNTELTEL-D--VSHNTKLK 342 (457)
T ss_dssp ---------------------------------------------------CTTCCEEECTTCCCSCC-C--CTTCTTCS
T ss_pred ---------------------------------------------------cccCCEEECCCCccccc-c--cccCCcCc
Confidence 24567778888888773 2 77888888
Q ss_pred eeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCCC
Q 045967 772 LLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQG 835 (929)
Q Consensus 772 ~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~ 835 (929)
.|++++|++++ ++.|+.|++++|.++|. .++..|..+++++|+++|.||..
T Consensus 343 ~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 343 SLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred EEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 88888888875 24566778888888875 34556777888888888888864
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.6e-32 Score=317.74 Aligned_cols=343 Identities=27% Similarity=0.362 Sum_probs=218.0
Q ss_pred CCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCC
Q 045967 239 MTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSS 318 (929)
Q Consensus 239 l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~ 318 (929)
+++++.|+++++.+. .+| .+..+++|++|++++|.+++. |. ++++++|++|++++|.+.+
T Consensus 45 l~~l~~L~l~~~~i~-----------------~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~ 104 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-----------------SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIAD 104 (466)
T ss_dssp HHTCCEEECCSSCCC-----------------CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC
T ss_pred hccccEEecCCCCCc-----------------cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCcccc
Confidence 566666666666542 122 245566666666666666653 32 6666666666666666664
Q ss_pred CCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEE
Q 045967 319 HIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYV 398 (929)
Q Consensus 319 ~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 398 (929)
..+ ++++++|++|++++|.+++..+ +.++++|++|++++|.+++ ++ .+.++++|++|
T Consensus 105 ~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-------------------~~-~~~~l~~L~~L 161 (466)
T 1o6v_A 105 ITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-------------------IS-ALSGLTSLQQL 161 (466)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-------------------CG-GGTTCTTCSEE
T ss_pred Chh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-------------------Ch-hhccCCcccEe
Confidence 433 6666666666666666664432 5666666666666665541 22 35666666666
Q ss_pred EcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCC
Q 045967 399 RLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSL 478 (929)
Q Consensus 399 ~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 478 (929)
+++ |.+.+..+...+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|+
T Consensus 162 ~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~--- 232 (466)
T 1o6v_A 162 SFG-NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQ--- 232 (466)
T ss_dssp EEE-ESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSC---
T ss_pred ecC-CcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCC---
Confidence 664 3444333333556666666666666532 235566666666666666655532 4555666666666653
Q ss_pred CccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc-CC
Q 045967 479 GTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ-IS 557 (929)
Q Consensus 479 ~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~-~~ 557 (929)
++.++ .+..+++|++|++++|.+.+..+ + ..+++|++|++++|.+++..+ ..
T Consensus 233 ----------------------l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~~~~~~~~ 285 (466)
T 1o6v_A 233 ----------------------LKDIG-TLASLTNLTDLDLANNQISNLAP--L--SGLTKLTELKLGANQISNISPLAG 285 (466)
T ss_dssp ----------------------CCCCG-GGGGCTTCSEEECCSSCCCCCGG--G--TTCTTCSEEECCSSCCCCCGGGTT
T ss_pred ----------------------cccch-hhhcCCCCCEEECCCCccccchh--h--hcCCCCCEEECCCCccCccccccC
Confidence 33332 35566677777777777765544 3 566777777777777776654 45
Q ss_pred CCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccc
Q 045967 558 WKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSL 637 (929)
Q Consensus 558 ~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~ 637 (929)
+++|+.|++++|.++ +. +. +..+++|+.|++++|++++..| +..++.+ +.|++++|.+++. ..+
T Consensus 286 l~~L~~L~L~~n~l~--------~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L--~~L~l~~n~l~~~--~~l 349 (466)
T 1o6v_A 286 LTALTNLELNENQLE--------DI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKL--QRLFFYNNKVSDV--SSL 349 (466)
T ss_dssp CTTCSEEECCSSCCS--------CC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTC--CEEECCSSCCCCC--GGG
T ss_pred CCccCeEEcCCCccc--------Cc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccC--CEeECCCCccCCc--hhh
Confidence 667777777777776 22 22 6677788888888888876655 5566653 4788888887776 467
Q ss_pred cCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccc
Q 045967 638 VNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLR 678 (929)
Q Consensus 638 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 678 (929)
.++++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 888899999999999988876 788888888888888776
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.4e-32 Score=315.00 Aligned_cols=329 Identities=26% Similarity=0.347 Sum_probs=239.2
Q ss_pred hhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEecc
Q 045967 233 QALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLM 312 (929)
Q Consensus 233 ~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls 312 (929)
-+.+..+++|++|+|++|.+.+. ++ ++++++|++|++++|.+.+..+ ++++++|++|+++
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~-----------------~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDI-----------------TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCC-----------------GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CcchhhhcCCCEEECCCCccCCc-----------------hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 47788899999999999987542 33 7788999999999999987544 9999999999999
Q ss_pred CccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCC
Q 045967 313 HNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSL 392 (929)
Q Consensus 313 ~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l 392 (929)
+|.+++..+ +.++++|++|++++|.+.+ ++.+.++++|++|+++ |.+. .+ ..+.++
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~-~~~~-------------------~~-~~~~~l 176 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVT-------------------DL-KPLANL 176 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE-ESCC-------------------CC-GGGTTC
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC-Cccc-------------------Cc-hhhccC
Confidence 999997543 9999999999999999986 4568999999999986 3433 12 238899
Q ss_pred CCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEcc
Q 045967 393 PLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYIS 472 (929)
Q Consensus 393 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 472 (929)
++|++|++++|.+++......+++|++|++++|.+++..| +..+++|++|++++|++++. ..+..+++|++|+++
T Consensus 177 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLA 251 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECC
T ss_pred CCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECC
Confidence 9999999999999865443488999999999999987655 78899999999999999886 468899999999999
Q ss_pred CCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccc
Q 045967 473 HNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITK 552 (929)
Q Consensus 473 ~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~ 552 (929)
+|++. +..+ ...+++|+.|++++|.++.++. +..+++|++|++++|++ ++
T Consensus 252 ~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l--------------------------~~ 301 (466)
T 1o6v_A 252 NNQIS--NLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL--------------------------ED 301 (466)
T ss_dssp SSCCC--CCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC--------------------------SC
T ss_pred CCccc--cchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcc--------------------------cC
Confidence 99543 2211 2244455555555555544443 44444555555555544 44
Q ss_pred ccc-CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCC
Q 045967 553 MKQ-ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEG 631 (929)
Q Consensus 553 ~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~ 631 (929)
..+ ..+++|+.|++++|.++ +..| +..+++|++|++++|++++. ..+..++.+ +.|++++|.+++
T Consensus 302 ~~~~~~l~~L~~L~L~~n~l~--------~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L--~~L~l~~n~l~~ 367 (466)
T 1o6v_A 302 ISPISNLKNLTYLTLYFNNIS--------DISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI--NWLSAGHNQISD 367 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCS--------CCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC--CEEECCSSCCCB
T ss_pred chhhcCCCCCCEEECcCCcCC--------Cchh--hccCccCCEeECCCCccCCc--hhhccCCCC--CEEeCCCCccCc
Confidence 433 33445555555555554 2222 45566666666666666643 345555543 466666666666
Q ss_pred CCcccccCCCCCcEEEccCCcCCCC
Q 045967 632 ANPQSLVNCTKLEVLDIGNNKINDV 656 (929)
Q Consensus 632 ~~p~~~~~l~~L~~L~Ls~N~l~~~ 656 (929)
..| +..+++|+.|++++|.+++.
T Consensus 368 ~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 368 LTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CGG--GTTCTTCCEEECCCEEEECC
T ss_pred cch--hhcCCCCCEEeccCCcccCC
Confidence 655 67778888888888888774
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=320.84 Aligned_cols=346 Identities=18% Similarity=0.183 Sum_probs=215.1
Q ss_pred cEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCC
Q 045967 396 EYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNS 475 (929)
Q Consensus 396 ~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 475 (929)
+.++.+++.++ .+|..-.++++.|+|++|++++..+..|.++++|++|+|++|.+++..+ ..|.++++|++|+|++|+
T Consensus 14 ~~v~c~~~~l~-~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCS-SCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcC-cCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCc
Confidence 34555555555 2333333566666666666665556666666777777777776666544 556666666666666663
Q ss_pred CCCCccccccCCCCCcceeeccccCCCCCCh-hhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccc
Q 045967 476 LSLGTTFKIDIPFPKFSYLSLFACNISAFPS-FLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMK 554 (929)
Q Consensus 476 l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~ 554 (929)
+. .+|. .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++++.
T Consensus 92 l~-------------------------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~ 144 (477)
T 2id5_A 92 LK-------------------------LIPLGVFTGLSNLTKLDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYIS 144 (477)
T ss_dssp CC-------------------------SCCTTSSTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEEECCTTCCEEC
T ss_pred CC-------------------------ccCcccccCCCCCCEEECCCCccccCChhHc--cccccCCEEECCCCccceeC
Confidence 32 2222 24455566666666666655555544 44455555555544444332
Q ss_pred cCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCc
Q 045967 555 QISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANP 634 (929)
Q Consensus 555 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p 634 (929)
+..+..+++|++|++++|++++..+..+..++.+ +.|++++|.+.+..+
T Consensus 145 -----------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 145 -----------------------------HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL--IVLRLRHLNINAIRD 193 (477)
T ss_dssp -----------------------------TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC--CEEEEESCCCCEECT
T ss_pred -----------------------------hhhccCCCCCCEEECCCCcCcccChhHhcccCCC--cEEeCCCCcCcEeCh
Confidence 2233344445555555555443333334444332 244555555554445
Q ss_pred ccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCC
Q 045967 635 QSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEG 714 (929)
Q Consensus 635 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n 714 (929)
..+..+++|+.|++++|.+.+.+|.......+|+.|++++|+++ .+|...+..
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---------------~~~~~~~~~------------ 246 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT---------------AVPYLAVRH------------ 246 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC---------------SCCHHHHTT------------
T ss_pred hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc---------------ccCHHHhcC------------
Confidence 56666777777777777766666655555556666555555443 455444332
Q ss_pred cccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCC
Q 045967 715 KLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKL 794 (929)
Q Consensus 715 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L 794 (929)
+++|+.|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|
T Consensus 247 ----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 247 ----------------------------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp ----------------------------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred ----------------------------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 5677888888888887777888888999999999999998888888899999
Q ss_pred CEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCCCCCCCccccccccCCcCCCCCC
Q 045967 795 ESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSYIGNLGLCGFS 856 (929)
Q Consensus 795 ~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~Lcg~~ 856 (929)
+.|+|++|++++..+..|..+++|+.|++++|++.+.++....+.......+.++...|+.|
T Consensus 299 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 99999999999877778888889999999999988776543222223334556666667544
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=6.4e-31 Score=298.70 Aligned_cols=342 Identities=18% Similarity=0.174 Sum_probs=195.6
Q ss_pred ccCCCCCCCCCCC-CcccccCCCCccccc--Cc--hhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccc-
Q 045967 202 KMISWKKDTNYCS-WDGLTCDMATVSLET--PV--FQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANS- 275 (929)
Q Consensus 202 ~l~sW~~~~~~C~-W~Gv~C~~~~~~~~~--~~--~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~- 275 (929)
.+++|..+.+||. |.++.|.....++.. .. ....-..+++++.|+++++.+. .+|..
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~-----------------~l~~~~ 64 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-----------------KLPAAL 64 (390)
T ss_dssp -----CCEECBCC------EEEESCEECSSCCCCEESCSSGGGCCCSEEEEESCEES-----------------EECTHH
T ss_pred CcCCCCCccceehhhhhhccceeeeeeecccccccccccccccCCceEEEecCCchh-----------------hCChhH
Confidence 3578988888886 444444321111111 11 1111223578999999988763 33433
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCC
Q 045967 276 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVS 354 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~ 354 (929)
+.++++|++|++++|.+.+..+..|+.+++|++|+|++|.+++..|..++++++|++|++++|.++...+. +.++++|+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 46679999999999999887777899999999999999999988888899999999999999999866555 68899999
Q ss_pred EEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccc
Q 045967 355 FFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSS 434 (929)
Q Consensus 355 ~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 434 (929)
+|++++|.+++..| ..+.++++|++|++++|++++. +...+++|+.|++++|.+++
T Consensus 145 ~L~L~~n~l~~~~~------------------~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l~~----- 200 (390)
T 3o6n_A 145 TLSMSNNNLERIED------------------DTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLST----- 200 (390)
T ss_dssp EEECCSSCCCBCCT------------------TTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCCSE-----
T ss_pred EEECCCCccCccCh------------------hhccCCCCCCEEECCCCcCCcc-ccccccccceeecccccccc-----
Confidence 99999998875433 3344444444444444444422 22234444444444444431
Q ss_pred cccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCC-Chhhhcccc
Q 045967 435 IFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAF-PSFLRTQDK 513 (929)
Q Consensus 435 l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~ 513 (929)
+...++|++|++++|.+..... ...++|+.|++++|.+... +....+++|++|++++|.++.+ |..+..+++
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred cCCCCcceEEECCCCeeeeccc----cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 1223344444444444443311 1224444445544432211 1111344455555555544432 445555566
Q ss_pred cceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc--CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccC
Q 045967 514 LFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDII 591 (929)
Q Consensus 514 L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~--~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~ 591 (929)
|++|++++|++++ +|..+ ..+++|++|++++|.++++++ ..+++|++|++++|.+++ ++ +..++
T Consensus 274 L~~L~L~~n~l~~-~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~---------~~--~~~~~ 339 (390)
T 3o6n_A 274 LERLYISNNRLVA-LNLYG--QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT---------LK--LSTHH 339 (390)
T ss_dssp CCEEECCSSCCCE-EECSS--SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC---------CC--CCTTC
T ss_pred CCEEECCCCcCcc-cCccc--CCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce---------eC--chhhc
Confidence 6666666665553 23222 345566666666666655443 234566666666666642 11 34456
Q ss_pred CCCEEeCCCCcCcC
Q 045967 592 ALDVLDLSNNRLSG 605 (929)
Q Consensus 592 ~L~~L~Ls~N~l~~ 605 (929)
+|+.|++++|++..
T Consensus 340 ~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 340 TLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSEEECCSSCEEH
T ss_pred cCCEEEcCCCCccc
Confidence 66677777776653
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=302.84 Aligned_cols=293 Identities=23% Similarity=0.229 Sum_probs=176.0
Q ss_pred CCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCC
Q 045967 281 LLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLS 359 (929)
Q Consensus 281 ~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls 359 (929)
++++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+. +.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 455556666555555555555666666666666666555555566666666666666665544443 4555566555555
Q ss_pred CCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCCCCCCCcccccc
Q 045967 360 NNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIFE 437 (929)
Q Consensus 360 ~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~ 437 (929)
+|.+++ ..|..+.++++|++|++++|.+++..+.. .+++|++|++++|++++..+..+.+
T Consensus 113 ~n~i~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 174 (477)
T 2id5_A 113 ENKIVI------------------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174 (477)
T ss_dssp TSCCCE------------------ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT
T ss_pred CCcccc------------------CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc
Confidence 555442 22344555566666666666655444332 4566666666666666555555666
Q ss_pred CCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccC-CCCCcceeeccccCCCCCCh-hhhcccccc
Q 045967 438 LVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKFSYLSLFACNISAFPS-FLRTQDKLF 515 (929)
Q Consensus 438 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~lp~-~l~~~~~L~ 515 (929)
+++|+.|++++|.+.+..+ ..|..+++|++|++++| ...+.++... ...+|+.|++++|+++.+|. .+..+++|+
T Consensus 175 l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 175 LHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHW--PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp CTTCCEEEEESCCCCEECT-TCSCSCTTCCEEEEECC--TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred cCCCcEEeCCCCcCcEeCh-hhcccCcccceeeCCCC--ccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 7777777777777666544 56666777777777776 3333333332 34466666666666666663 567777888
Q ss_pred eeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc---CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCC
Q 045967 516 YLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIA 592 (929)
Q Consensus 516 ~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~ 592 (929)
+|++++|.+.+..+..+ ..+++|++|++++|.++++.+ ..+++|+.|++++|.++ +..+..+..+++
T Consensus 252 ~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~ 321 (477)
T 2id5_A 252 FLNLSYNPISTIEGSML--HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT--------TLEESVFHSVGN 321 (477)
T ss_dssp EEECCSSCCCEECTTSC--TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS--------CCCGGGBSCGGG
T ss_pred eeECCCCcCCccChhhc--cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc--------eeCHhHcCCCcc
Confidence 88888887776666656 566777777777777766654 23456666666666665 222334555666
Q ss_pred CCEEeCCCCcCc
Q 045967 593 LDVLDLSNNRLS 604 (929)
Q Consensus 593 L~~L~Ls~N~l~ 604 (929)
|++|++++|++.
T Consensus 322 L~~L~l~~N~l~ 333 (477)
T 2id5_A 322 LETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSSCEE
T ss_pred cCEEEccCCCcc
Confidence 666666666655
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2e-30 Score=294.67 Aligned_cols=331 Identities=20% Similarity=0.259 Sum_probs=206.2
Q ss_pred CCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEE
Q 045967 392 LPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYL 469 (929)
Q Consensus 392 l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 469 (929)
+++++.|++++|.++...+.. .+++|++|++++|.+++..+..|..+++|++|++++|.+++..+ ..|+++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCCCEE
Confidence 345555555555554322211 34555555555555554444455555555555555555554433 344555555555
Q ss_pred EccCCCCCCCccccccCCCCCcceeeccccCCCCCChh-hhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccc
Q 045967 470 YISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSF-LRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHN 548 (929)
Q Consensus 470 ~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N 548 (929)
++++| .++.+|.. +..+++|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 123 ~L~~n-------------------------~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 123 VLERN-------------------------DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSN 175 (390)
T ss_dssp ECCSS-------------------------CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--SSCTTCCEEECCSS
T ss_pred ECCCC-------------------------ccCcCCHHHhcCCCCCcEEECCCCccCccChhhc--cCCCCCCEEECCCC
Confidence 55554 44455554 4778888888888888887777767 67788888888888
Q ss_pred cccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcc
Q 045967 549 FITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNE 628 (929)
Q Consensus 549 ~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~ 628 (929)
.+++.....+++|+.|++++|.+++ +...+.|++|++++|++... |.
T Consensus 176 ~l~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~L~~L~l~~n~l~~~-~~------------------- 222 (390)
T 3o6n_A 176 RLTHVDLSLIPSLFHANVSYNLLST-------------LAIPIAVEELDASHNSINVV-RG------------------- 222 (390)
T ss_dssp CCSBCCGGGCTTCSEEECCSSCCSE-------------EECCSSCSEEECCSSCCCEE-EC-------------------
T ss_pred cCCccccccccccceeecccccccc-------------cCCCCcceEEECCCCeeeec-cc-------------------
Confidence 8887766677777888887777651 22234677777777766521 21
Q ss_pred cCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccc
Q 045967 629 LEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRN 708 (929)
Q Consensus 629 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~ 708 (929)
...++|+.|++++|.+++. .++..+++|++|++++|+++ +..|.. +.
T Consensus 223 ---------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~--------------~~~~~~-~~------- 269 (390)
T 3o6n_A 223 ---------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE--------------KIMYHP-FV------- 269 (390)
T ss_dssp ---------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC--------------EEESGG-GT-------
T ss_pred ---------cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC--------------CcChhH-cc-------
Confidence 1124567777777777654 45666666666655555443 222211 11
Q ss_pred cccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccc
Q 045967 709 VGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSL 788 (929)
Q Consensus 709 L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l 788 (929)
.+++|+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+
T Consensus 270 ---------------------------------~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~ 314 (390)
T 3o6n_A 270 ---------------------------------KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314 (390)
T ss_dssp ---------------------------------TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred ---------------------------------ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccc
Confidence 14556666777777664 4555667888888888888888 567778
Q ss_pred cCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCCCCCCCccccccccCCcCCCCC
Q 045967 789 GNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSYIGNLGLCGF 855 (929)
Q Consensus 789 ~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~Lcg~ 855 (929)
..+++|+.|+|++|.+++. | +..+++|+.|++++|++.+.... ..+..+....+.+++..|+.
T Consensus 315 ~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred cccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 8888888888888888854 3 67788899999999998874322 22344455556666666653
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.8e-30 Score=311.58 Aligned_cols=332 Identities=21% Similarity=0.274 Sum_probs=210.7
Q ss_pred CCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccC-CCCCcce
Q 045967 415 KSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKFSY 493 (929)
Q Consensus 415 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~ 493 (929)
.+++.|++++|.+....+..+.++++|+.|++++|.+++..+ ..|..+++|++|+|++|. +.+..+..+ .+++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-HHhcCCCCCCEEECCCCc--CCCCCHHHHcCCCCCCE
Confidence 344444444444443333333444445555555544444432 344444445555554442 222222222 3444444
Q ss_pred eeccccCCCCCChh-hhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCC
Q 045967 494 LSLFACNISAFPSF-LRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQ 572 (929)
Q Consensus 494 L~L~~n~l~~lp~~-l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~ 572 (929)
|++++|.++.+|.. +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++.....+++|+.|++++|.++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh--hcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccc
Confidence 44444455556654 5788888889998888888888777 77888888888888888877777788888888888775
Q ss_pred CCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCc
Q 045967 573 GPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNK 652 (929)
Q Consensus 573 ~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 652 (929)
+ +.....|+.|++++|.++.. +..+ .++|+.|++++|.
T Consensus 206 ~-------------l~~~~~L~~L~ls~n~l~~~-~~~~----------------------------~~~L~~L~L~~n~ 243 (597)
T 3oja_B 206 T-------------LAIPIAVEELDASHNSINVV-RGPV----------------------------NVELTILKLQHNN 243 (597)
T ss_dssp E-------------EECCTTCSEEECCSSCCCEE-ECSC----------------------------CSCCCEEECCSSC
T ss_pred c-------------ccCCchhheeeccCCccccc-cccc----------------------------CCCCCEEECCCCC
Confidence 1 22334677777777776521 1110 1356677777777
Q ss_pred CCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEe
Q 045967 653 INDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTL 732 (929)
Q Consensus 653 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~ 732 (929)
+++. .++..+++|+.|+|++|.++ +.+|..+ .
T Consensus 244 l~~~--~~l~~l~~L~~L~Ls~N~l~--------------~~~~~~~-~------------------------------- 275 (597)
T 3oja_B 244 LTDT--AWLLNYPGLVEVDLSYNELE--------------KIMYHPF-V------------------------------- 275 (597)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCC--------------EEESGGG-T-------------------------------
T ss_pred CCCC--hhhccCCCCCEEECCCCccC--------------CCCHHHh-c-------------------------------
Confidence 6653 45666666666555554443 2333211 1
Q ss_pred cCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhh
Q 045967 733 KGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQL 812 (929)
Q Consensus 733 ~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l 812 (929)
.+++|+.|+|++|.+++ +|..++.+++|++|+|++|.++ .+|..++.+++|+.|+|++|.+++.. +
T Consensus 276 ---------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~ 341 (597)
T 3oja_B 276 ---------KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---L 341 (597)
T ss_dssp ---------TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---C
T ss_pred ---------CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---h
Confidence 14566677777777764 4666677888999999999888 67778888899999999999988652 6
Q ss_pred ccCCCCCEEECccCcCccCCCCCCCCCccccccccCCcCCCCCC
Q 045967 813 ASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSYIGNLGLCGFS 856 (929)
Q Consensus 813 ~~L~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~Lcg~~ 856 (929)
..+++|+.|++++|++.|..+. ..+..+....+.++...|+.+
T Consensus 342 ~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 342 STHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred hhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 6778899999999999886542 235566667788899999864
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.2e-30 Score=309.30 Aligned_cols=335 Identities=19% Similarity=0.175 Sum_probs=192.5
Q ss_pred ccCCCCCCCCCCC----CcccccCCCCcccccCchh--hhhcCCCCceEEEcCCCCCCCCCCccccccccccccccccc-
Q 045967 202 KMISWKKDTNYCS----WDGLTCDMATVSLETPVFQ--ALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELAN- 274 (929)
Q Consensus 202 ~l~sW~~~~~~C~----W~Gv~C~~~~~~~~~~~~~--~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~- 274 (929)
.+++|..+.+||. |.++.|+.. ......... ..-..+.+++.|+++++.+.+ +|+
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~-i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~-----------------lp~~ 69 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVH-IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-----------------LPAA 69 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCE-ECSSCCCCEESCSSGGGCCCSEEEESSCEESE-----------------ECTH
T ss_pred cccCCCCCCcCcccCcCceeEecCce-ecccccccccCcccccCCCceEEEeeCCCCCC-----------------cCHH
Confidence 5678988888884 666655421 111111110 111235678889998886632 333
Q ss_pred ccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCC
Q 045967 275 SIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQV 353 (929)
Q Consensus 275 ~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L 353 (929)
.+.++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|.+++.++. ++++++|
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 245678899999999998887777889999999999999999888888889999999999999998876666 5888999
Q ss_pred CEEeCCCCcCCCCCCCC------CcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCC
Q 045967 354 SFFDLSNNQLAGPVPSH------EMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRL 427 (929)
Q Consensus 354 ~~L~Ls~n~l~~~~p~~------L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l 427 (929)
++|++++|.+++..|.. |+.|++++|.+++. .++.+++|+.|++++|.+++.. ...+|+.|++++|.+
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l~---~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLA---IPIAVEELDASHNSI 223 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEEE---CCTTCSEEECCSSCC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccccc---CCchhheeeccCCcc
Confidence 99998888887654432 55555555555543 1334455555555555554321 223455555555555
Q ss_pred CCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccC-CCCCcceeeccccCCCCCCh
Q 045967 428 QGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKFSYLSLFACNISAFPS 506 (929)
Q Consensus 428 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~lp~ 506 (929)
+. ++..+ .++|+.|++++|.+++. ..+..+++|+.|++++| .+.+..+..+ .+++|+.|++++|.++.+|.
T Consensus 224 ~~-~~~~~--~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 295 (597)
T 3oja_B 224 NV-VRGPV--NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN--ELEKIMYHPFVKMQRLERLYISNNRLVALNL 295 (597)
T ss_dssp CE-EECSC--CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS--CCCEEESGGGTTCSSCCEEECTTSCCCEEEC
T ss_pred cc-ccccc--CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCC--ccCCCCHHHhcCccCCCEEECCCCCCCCCCc
Confidence 42 22211 23555555555555543 34555555555555555 2233333222 34444444444444444444
Q ss_pred hhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCC
Q 045967 507 FLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLL 571 (929)
Q Consensus 507 ~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l 571 (929)
.+..+++|++|++++|.+. .+|..+ ..+++|+.|++++|.+++.....+++|+.|++++|.+
T Consensus 296 ~~~~l~~L~~L~Ls~N~l~-~i~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHNHLL-HVERNQ--PQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp SSSCCTTCCEEECCSSCCC-CCGGGH--HHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred ccccCCCCcEEECCCCCCC-ccCccc--ccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 4444444555555554444 233333 3334444444444444444333344444444444443
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.7e-31 Score=290.34 Aligned_cols=251 Identities=15% Similarity=0.213 Sum_probs=153.7
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCCcccccccccccCCC----CCCCCCCCCcccccCCCCcccccCchhhhhcCCCCceE
Q 045967 169 KHCPHEQSSALIQFKQLFSFDGDSSFVCQHSYPKMISW----KKDTNYCSWDGLTCDMATVSLETPVFQALVQNMTKLQV 244 (929)
Q Consensus 169 ~~c~~~e~~aLl~~k~~l~~~~~~~~~~~~~~~~l~sW----~~~~~~C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~ 244 (929)
..+..+|+.||++||+++..++.+ .+.+| ....++|.|.|++|+..... +. -...++|+.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~---------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~-----l~--~~~~~~l~~ 85 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNR---------WHSAWRQANSNNPQIETRTGRALKATADL-----LE--DATQPGRVA 85 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTT---------HHHHHHHHTTTCTTSCCSHHHHHHHHHHH-----HH--HHTSTTCCE
T ss_pred cccCchHHHHHHHHHHhccCCchh---------hhhhhcccccccccccccCCcchhhhHHH-----Hh--cccccceeE
Confidence 345678999999999998544432 56789 44678999999999632100 00 112457888
Q ss_pred EEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCcccc
Q 045967 245 LSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSL 324 (929)
Q Consensus 245 L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l 324 (929)
|+|++|.+. .+|..++++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+
T Consensus 86 L~L~~n~l~-----------------~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l 146 (328)
T 4fcg_A 86 LELRSVPLP-----------------QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI 146 (328)
T ss_dssp EEEESSCCS-----------------SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG
T ss_pred EEccCCCch-----------------hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH
Confidence 999888763 34556667788888888888888 68888888888888888888888 678888
Q ss_pred CCCCCCCEEEccCCcCCCCCCC-CCC---------CCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCC
Q 045967 325 SNLVQLTCLDLSGNSFVGEIPD-IVN---------LTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPL 394 (929)
Q Consensus 325 ~~L~~L~~L~Ls~N~l~~~~p~-l~~---------L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~ 394 (929)
+++++|++|++++|++.+.+|. +.. +++|++|++++|.++ .+|..++++++
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-------------------~lp~~l~~l~~ 207 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-------------------SLPASIANLQN 207 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-------------------CCCGGGGGCTT
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-------------------cchHhhcCCCC
Confidence 8888888888888877777765 332 445555544444443 33444555555
Q ss_pred CcEEEcccccCCCCCCCC-CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccC
Q 045967 395 LEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISH 473 (929)
Q Consensus 395 L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 473 (929)
|++|++++|.+++..+.. .+++|++|++++|.+.+.+|..+.++++|++|++++|++.+.+| ..+.++++|++|++++
T Consensus 208 L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRG 286 (328)
T ss_dssp CCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTT
T ss_pred CCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCC
Confidence 555555555544322222 33444444444444444444444444444444444444443333 2333333333333333
Q ss_pred C
Q 045967 474 N 474 (929)
Q Consensus 474 N 474 (929)
|
T Consensus 287 n 287 (328)
T 4fcg_A 287 C 287 (328)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.2e-29 Score=278.92 Aligned_cols=305 Identities=24% Similarity=0.390 Sum_probs=167.7
Q ss_pred CCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEE
Q 045967 277 GNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFF 356 (929)
Q Consensus 277 ~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L 356 (929)
..+++|++|++++|.+.. +| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++ ++.+.++++|++|
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L 115 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-ISALQNLTNLREL 115 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEE
T ss_pred hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-chHHcCCCcCCEE
Confidence 345667777777766654 33 266667777777777766643 22 6667777777777776664 3456666666666
Q ss_pred eCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC-CCCCCcEEEecCCCCCCCCcccc
Q 045967 357 DLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF-PSKSLQNIYLSNNRLQGSIPSSI 435 (929)
Q Consensus 357 ~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l 435 (929)
++++|.+++ ++. +.++++|++|++++|.....++.. .+++|++|++++|.+.+..+ +
T Consensus 116 ~l~~n~i~~-------------------~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~ 173 (347)
T 4fmz_A 116 YLNEDNISD-------------------ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--I 173 (347)
T ss_dssp ECTTSCCCC-------------------CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred ECcCCcccC-------------------chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--h
Confidence 666666552 222 556666666666666443333322 45556666666665553322 5
Q ss_pred ccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccc
Q 045967 436 FELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLF 515 (929)
Q Consensus 436 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~ 515 (929)
..+++|++|++++|.+.+.. .+..+++|+.|++++|.+. .++. +..+++|+
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~-------------------------~~~~-~~~~~~L~ 224 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQIT-------------------------DITP-VANMTRLN 224 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCC-------------------------CCGG-GGGCTTCC
T ss_pred ccCCCCCEEEccCCcccccc---cccCCCccceeecccCCCC-------------------------CCch-hhcCCcCC
Confidence 55666666666666665542 2555566666666555322 1221 34444555
Q ss_pred eeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCE
Q 045967 516 YLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDV 595 (929)
Q Consensus 516 ~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~ 595 (929)
+|++++|.+.+..+ + ..+++|++|++++|.++++. .+..+++|++
T Consensus 225 ~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~~~~-------------------------------~~~~l~~L~~ 269 (347)
T 4fmz_A 225 SLKIGNNKITDLSP--L--ANLSQLTWLEIGTNQISDIN-------------------------------AVKDLTKLKM 269 (347)
T ss_dssp EEECCSSCCCCCGG--G--TTCTTCCEEECCSSCCCCCG-------------------------------GGTTCTTCCE
T ss_pred EEEccCCccCCCcc--h--hcCCCCCEEECCCCccCCCh-------------------------------hHhcCCCcCE
Confidence 55555555543322 2 33444444444444443322 2333344444
Q ss_pred EeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeecccc
Q 045967 596 LDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSN 675 (929)
Q Consensus 596 L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 675 (929)
|++++|++++. ..+..++.+ +.|++++|.+.+..+..+.++++|++|++++|++++..| +..+++|+.|++++|
T Consensus 270 L~l~~n~l~~~--~~~~~l~~L--~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 270 LNVGSNQISDI--SVLNNLSQL--NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp EECCSSCCCCC--GGGGGCTTC--SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC
T ss_pred EEccCCccCCC--hhhcCCCCC--CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhh
Confidence 44444444422 123333332 245555555555555566677788888888888887755 677888888888877
Q ss_pred ccc
Q 045967 676 KLR 678 (929)
Q Consensus 676 ~l~ 678 (929)
.++
T Consensus 344 ~i~ 346 (347)
T 4fmz_A 344 VIK 346 (347)
T ss_dssp ---
T ss_pred ccc
Confidence 764
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1e-30 Score=287.60 Aligned_cols=258 Identities=26% Similarity=0.434 Sum_probs=175.2
Q ss_pred CccEEEcCCCCCCCCCCCCCCc--ccchhhhccCCCCEEeCCC-CcCcCCCccccccCcccccceeeccCcccCCCCccc
Q 045967 560 NLGYLDLRSNLLQGPLPVPPSR--EIIHSICDIIALDVLDLSN-NRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQS 636 (929)
Q Consensus 560 ~L~~L~Ls~N~l~~~~~~~~~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~ 636 (929)
+++.|++++|.++ + .+|..+.++++|++|++++ |.+.+.+|..++.++.+ ++|++++|.+++.+|..
T Consensus 51 ~l~~L~L~~~~l~--------~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 51 RVNNLDLSGLNLP--------KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL--HYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CEEEEEEECCCCS--------SCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTC--SEEEEEEECCEEECCGG
T ss_pred eEEEEECCCCCcc--------CCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCC--CEEECcCCeeCCcCCHH
Confidence 3444555555554 3 4445555555555555553 55555555555555542 35555555555555555
Q ss_pred ccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhh-cccccccCCCc
Q 045967 637 LVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLN-AMRNVGADEGK 715 (929)
Q Consensus 637 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~-~L~~L~ls~n~ 715 (929)
+.++++|++|++++|.+++.+|..+..+++|++|++++|+++ |.+|..+ ..++ .|+.|++++|.
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--------------~~~p~~l-~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS--------------GAIPDSY-GSFSKLFTSMTISRNR 185 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE--------------EECCGGG-GCCCTTCCEEECCSSE
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc--------------CcCCHHH-hhhhhcCcEEECcCCe
Confidence 555555555555555555555555555555555444444333 2233221 2222 33444444433
Q ss_pred ccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCC
Q 045967 716 LRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLE 795 (929)
Q Consensus 716 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~ 795 (929)
+....+..+ ..++ |+.|++++|++++.+|..++.+++|++|+|++|++++.+|. +..+++|+
T Consensus 186 l~~~~~~~~----------------~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~ 247 (313)
T 1ogq_A 186 LTGKIPPTF----------------ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLN 247 (313)
T ss_dssp EEEECCGGG----------------GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCC
T ss_pred eeccCChHH----------------hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCC
Confidence 321111111 1133 89999999999999999999999999999999999987776 88999999
Q ss_pred EeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCCCCCCCccccccccCCcCCCCCCCCCCC
Q 045967 796 SLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQGPQFNTIQEDSYIGNLGLCGFSLTKKY 861 (929)
Q Consensus 796 ~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~Lcg~~l~~~c 861 (929)
+|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.||+.+||.|+. .|
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred EEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999999999999999999999999999999999988888999999999999998875 46
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=9.4e-29 Score=276.08 Aligned_cols=307 Identities=20% Similarity=0.311 Sum_probs=221.1
Q ss_pred cCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCC
Q 045967 300 LGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNN 379 (929)
Q Consensus 300 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N 379 (929)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~--------------- 101 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT--------------- 101 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC---------------
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc---------------
Confidence 4567899999999998874 34 48889999999999998886544 888888888888888776
Q ss_pred CCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhh
Q 045967 380 SLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYM 459 (929)
Q Consensus 380 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 459 (929)
.+ +.+.++++|++|++++|.+++..+...+++|++|++++|.....++ .+..+++|++|++++|.+.+.. .
T Consensus 102 ----~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~---~ 172 (347)
T 4fmz_A 102 ----DI-SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT---P 172 (347)
T ss_dssp ----CC-GGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG---G
T ss_pred ----Cc-hHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCch---h
Confidence 22 3477888888888888888765554467777777777775543433 3677777777777777776652 2
Q ss_pred hhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCC
Q 045967 460 FAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDS 539 (929)
Q Consensus 460 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 539 (929)
+..+++|++|++++|.+. .++. +..+++|+.+++++|.+.+..+ + ..
T Consensus 173 ~~~l~~L~~L~l~~n~l~-------------------------~~~~-~~~l~~L~~L~l~~n~l~~~~~--~--~~--- 219 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIE-------------------------DISP-LASLTSLHYFTAYVNQITDITP--V--AN--- 219 (347)
T ss_dssp GGGCTTCSEEECTTSCCC-------------------------CCGG-GGGCTTCCEEECCSSCCCCCGG--G--GG---
T ss_pred hccCCCCCEEEccCCccc-------------------------cccc-ccCCCccceeecccCCCCCCch--h--hc---
Confidence 566666666666666332 2332 4556666666666666654433 2 33
Q ss_pred ccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCccccc
Q 045967 540 LSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLS 619 (929)
Q Consensus 540 L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~ 619 (929)
+++|++|++++|.++ + ++. +..+++|++|++++|++++. ..+..++.+
T Consensus 220 ------------------~~~L~~L~l~~n~l~--------~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-- 267 (347)
T 4fmz_A 220 ------------------MTRLNSLKIGNNKIT--------D-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKL-- 267 (347)
T ss_dssp ------------------CTTCCEEECCSSCCC--------C-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC--
T ss_pred ------------------CCcCCEEEccCCccC--------C-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCc--
Confidence 345555666666664 1 222 67788999999999998853 456777764
Q ss_pred ceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHH
Q 045967 620 VSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARF 699 (929)
Q Consensus 620 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~ 699 (929)
+.|++++|.+++. ..+..+++|++|++++|.+++..+..++.+++|++|++++|+++ +..|
T Consensus 268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--------------~~~~--- 328 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT--------------DIRP--- 328 (347)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC--------------CCGG---
T ss_pred CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc--------------cccC---
Confidence 5899999999986 46889999999999999999999999999999998887777765 3333
Q ss_pred HhhhhcccccccCCCccc
Q 045967 700 FEKLNAMRNVGADEGKLR 717 (929)
Q Consensus 700 ~~~l~~L~~L~ls~n~l~ 717 (929)
+..+++|+.|++++|.++
T Consensus 329 ~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEESSSCC---
T ss_pred hhhhhccceeehhhhccc
Confidence 567788888888888764
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2.5e-27 Score=262.85 Aligned_cols=290 Identities=22% Similarity=0.256 Sum_probs=172.6
Q ss_pred CCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccC
Q 045967 394 LLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISH 473 (929)
Q Consensus 394 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 473 (929)
+++.++++++.++ .+|....++|++|++++|.+++..|..|.++++|++|++++|++++..+ ..|.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCcc-ccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEECCC
Confidence 5777777777776 3444444677777777777776666677777777777777777776654 5677777777777777
Q ss_pred CCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccc
Q 045967 474 NSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKM 553 (929)
Q Consensus 474 N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~ 553 (929)
|++. .+|..+. ++|++|++++|.+.+..+..+ ..+++|+.|++++|.++..
T Consensus 112 n~l~-------------------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 112 NHLV-------------------------EIPPNLP--SSLVELRIHDNRIRKVPKGVF--SGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp SCCC-------------------------SCCSSCC--TTCCEEECCSSCCCCCCSGGG--SSCSSCCEEECCSCCCBGG
T ss_pred CcCC-------------------------ccCcccc--ccCCEEECCCCccCccCHhHh--CCCccCCEEECCCCccccC
Confidence 7432 2332222 456666666666655444444 4444444444444443321
Q ss_pred ccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCC
Q 045967 554 KQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGAN 633 (929)
Q Consensus 554 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~ 633 (929)
+..+..+..+ +|++|++++|++++ +|..+
T Consensus 163 ---------------------------~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~---------------------- 191 (332)
T 2ft3_A 163 ---------------------------GFEPGAFDGL-KLNYLRISEAKLTG-IPKDL---------------------- 191 (332)
T ss_dssp ---------------------------GSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS----------------------
T ss_pred ---------------------------CCCcccccCC-ccCEEECcCCCCCc-cCccc----------------------
Confidence 1122233333 55666666666552 33221
Q ss_pred cccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCC
Q 045967 634 PQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADE 713 (929)
Q Consensus 634 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~ 713 (929)
. ++|++|++++|.+++..+..+..+++|+.|++++|+++ + ++...+.
T Consensus 192 ----~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~--------------~-~~~~~~~------------ 238 (332)
T 2ft3_A 192 ----P--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR--------------M-IENGSLS------------ 238 (332)
T ss_dssp ----C--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC--------------C-CCTTGGG------------
T ss_pred ----c--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC--------------c-CChhHhh------------
Confidence 1 35566666666666665556666666665555554443 1 2211111
Q ss_pred CcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccC---
Q 045967 714 GKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGN--- 790 (929)
Q Consensus 714 n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~--- 790 (929)
.+++|+.|++++|+++ .+|..+..+++|++|+|++|++++..+..|..
T Consensus 239 ----------------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 239 ----------------------------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp ----------------------------GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred ----------------------------CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 1445666666666666 56666777777888888888877666665554
Q ss_pred ---cCCCCEeeCCCCcCC--CCCchhhccCCCCCEEECccCc
Q 045967 791 ---LAKLESLDLSSNNLA--GKIPKQLASLTSLSVLNISHNR 827 (929)
Q Consensus 791 ---L~~L~~LdLs~N~ls--~~ip~~l~~L~~L~~L~Ls~N~ 827 (929)
...|+.|++++|.+. +..|..|..++.|+.+++++|+
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 356788888888887 6677778888888888888774
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=5.8e-27 Score=259.71 Aligned_cols=291 Identities=20% Similarity=0.229 Sum_probs=180.1
Q ss_pred CCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccC
Q 045967 394 LLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISH 473 (929)
Q Consensus 394 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 473 (929)
+++.++++++.++. +|....++|++|++++|++++..+..|.++++|++|++++|++++..+ ..|.++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccc-cCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH-HHhcCCCCCCEEECCC
Confidence 57777777777663 444334677778888887776666677778888888888887777655 5677777777777777
Q ss_pred CCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccc
Q 045967 474 NSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKM 553 (929)
Q Consensus 474 N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~ 553 (929)
|++. .+|..+. ++|++|++++|.+.+..+..+ ..+++|++|++++|.++..
T Consensus 110 n~l~-------------------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 110 NQLK-------------------------ELPEKMP--KTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp SCCS-------------------------BCCSSCC--TTCCEEECCSSCCCBBCHHHH--TTCTTCCEEECCSSCCCGG
T ss_pred CcCC-------------------------ccChhhc--ccccEEECCCCcccccCHhHh--cCCccccEEECCCCcCCcc
Confidence 7432 2222221 455666666666655444444 4444444444444433221
Q ss_pred ccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCC
Q 045967 554 KQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGAN 633 (929)
Q Consensus 554 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~ 633 (929)
+..+..+..+++|++|++++|+++ .+|..+
T Consensus 161 ---------------------------~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---------------------- 190 (330)
T 1xku_A 161 ---------------------------GIENGAFQGMKKLSYIRIADTNIT-TIPQGL---------------------- 190 (330)
T ss_dssp ---------------------------GBCTTGGGGCTTCCEEECCSSCCC-SCCSSC----------------------
T ss_pred ---------------------------CcChhhccCCCCcCEEECCCCccc-cCCccc----------------------
Confidence 233455666777777777777765 233211
Q ss_pred cccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCC
Q 045967 634 PQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADE 713 (929)
Q Consensus 634 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~ 713 (929)
.++|++|++++|++++..+..+..+++|+.|++++|+++ + ++...+.
T Consensus 191 ------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------------~-~~~~~~~------------ 237 (330)
T 1xku_A 191 ------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS--------------A-VDNGSLA------------ 237 (330)
T ss_dssp ------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC--------------E-ECTTTGG------------
T ss_pred ------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc--------------e-eChhhcc------------
Confidence 145667777777776666666666666666655555443 1 1111111
Q ss_pred CcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccC---
Q 045967 714 GKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGN--- 790 (929)
Q Consensus 714 n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~--- 790 (929)
.+++|+.|++++|+++ .+|..+..+++|++|+|++|++++..+..|..
T Consensus 238 ----------------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 238 ----------------------------NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp ----------------------------GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred ----------------------------CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 1455667777777776 56677777788888888888887666665543
Q ss_pred ---cCCCCEeeCCCCcCCC--CCchhhccCCCCCEEECccCc
Q 045967 791 ---LAKLESLDLSSNNLAG--KIPKQLASLTSLSVLNISHNR 827 (929)
Q Consensus 791 ---L~~L~~LdLs~N~ls~--~ip~~l~~L~~L~~L~Ls~N~ 827 (929)
...|+.|++++|.+.. ..|..|..+..++.+++++|+
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3677888888888763 556778888888888888874
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.5e-26 Score=256.37 Aligned_cols=274 Identities=19% Similarity=0.170 Sum_probs=139.4
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLS 359 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls 359 (929)
++|++|++++|.+++..+..|+++++|++|+|++|.+++..|..++++++|++|++++|.++.....+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 456677777777766555566777777777777777776666667777777777777776663322232 456666655
Q ss_pred CCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCC--CCCCC--CCCCCcEEEecCCCCCCCCcccc
Q 045967 360 NNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSG--HIDEF--PSKSLQNIYLSNNRLQGSIPSSI 435 (929)
Q Consensus 360 ~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l 435 (929)
+|.+++ ..+..+.++++|++|++++|.+.. ..+.. .+++|++|++++|.++ .+|..+
T Consensus 130 ~n~l~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~ 190 (330)
T 1xku_A 130 ENEITK------------------VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL 190 (330)
T ss_dssp SSCCCB------------------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC
T ss_pred CCcccc------------------cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc
Confidence 555542 222334444455555555444432 11111 3444555555555444 233332
Q ss_pred ccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccC-CCCCcceeeccccCCCCCChhhhccccc
Q 045967 436 FELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKFSYLSLFACNISAFPSFLRTQDKL 514 (929)
Q Consensus 436 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~lp~~l~~~~~L 514 (929)
. ++|++|++++|++++..+ ..+..+++|++|++++|.+ .+..+..+ .+++|++|++++|.++.+|..+..+++|
T Consensus 191 ~--~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 191 P--PSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSI--SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265 (330)
T ss_dssp C--TTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCC--CEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred c--ccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcC--ceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence 2 445555555555544433 3445555555555555522 11111111 2333333344444444566666677777
Q ss_pred ceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCC
Q 045967 515 FYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALD 594 (929)
Q Consensus 515 ~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~ 594 (929)
++|++++|.+++..+..|. ... .......++.+++++|.+... ...|..+..+..++
T Consensus 266 ~~L~l~~N~i~~~~~~~f~--~~~---------------~~~~~~~l~~l~l~~N~~~~~------~i~~~~f~~~~~l~ 322 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFC--PPG---------------YNTKKASYSGVSLFSNPVQYW------EIQPSTFRCVYVRA 322 (330)
T ss_dssp CEEECCSSCCCCCCTTSSS--CSS---------------CCTTSCCCSEEECCSSSSCGG------GSCGGGGTTCCCGG
T ss_pred CEEECCCCcCCccChhhcC--Ccc---------------cccccccccceEeecCccccc------ccCcccccccccee
Confidence 7777777777665544441 110 000123455666666665410 12334556666777
Q ss_pred EEeCCCCc
Q 045967 595 VLDLSNNR 602 (929)
Q Consensus 595 ~L~Ls~N~ 602 (929)
.+++++|+
T Consensus 323 ~l~L~~N~ 330 (330)
T 1xku_A 323 AVQLGNYK 330 (330)
T ss_dssp GEEC----
T ss_pred EEEecccC
Confidence 77777664
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.9e-29 Score=293.09 Aligned_cols=86 Identities=21% Similarity=0.226 Sum_probs=46.3
Q ss_pred cccEeeccccccCcc----cchhhccccccceeeccCccCCCCCCccccC-----cCCCCEeeCCCCcCCC----CCchh
Q 045967 745 VFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLTHNHFTGKIPSSLGN-----LAKLESLDLSSNNLAG----KIPKQ 811 (929)
Q Consensus 745 ~L~~LdLs~N~l~~~----ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~-----L~~L~~LdLs~N~ls~----~ip~~ 811 (929)
.|+.|++++|.+++. ++..+..+++|++|+|++|.+++..+..+.. .++|++|+|++|.+++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 455555555555543 3444455556666666666555443333322 4456666666666554 45555
Q ss_pred hccCCCCCEEECccCcCcc
Q 045967 812 LASLTSLSVLNISHNRLDG 830 (929)
Q Consensus 812 l~~L~~L~~L~Ls~N~l~g 830 (929)
+..+++|++|++++|++++
T Consensus 394 l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHCCCCCEEECCSSSCCH
T ss_pred HHhCCCccEEECCCCCCCH
Confidence 5555666666666665543
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1.3e-26 Score=257.16 Aligned_cols=273 Identities=18% Similarity=0.142 Sum_probs=149.1
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLS 359 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls 359 (929)
++|++|++++|.+.+..|..|.++++|++|++++|++++..|..++++++|++|++++|.++...+.+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 567777777777776566677777777777777777776667777777777777777777764333333 566666666
Q ss_pred CCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCC--CCCCC--CCCCCcEEEecCCCCCCCCcccc
Q 045967 360 NNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSG--HIDEF--PSKSLQNIYLSNNRLQGSIPSSI 435 (929)
Q Consensus 360 ~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l 435 (929)
+|.+++ ..+..+.++++|++|++++|.++. ..+.. .+ +|++|++++|++++ +|..+
T Consensus 132 ~n~i~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~ 191 (332)
T 2ft3_A 132 DNRIRK------------------VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL 191 (332)
T ss_dssp SSCCCC------------------CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS
T ss_pred CCccCc------------------cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc
Confidence 666552 222335555555555555555542 22221 22 55555666655553 34333
Q ss_pred ccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccC-CCCCcceeeccccCCCCCChhhhccccc
Q 045967 436 FELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKFSYLSLFACNISAFPSFLRTQDKL 514 (929)
Q Consensus 436 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~lp~~l~~~~~L 514 (929)
. ++|++|++++|.+++..+ ..+..+++|++|++++|++. +..+..+ .+++|++|++++|+++.+|..+..+++|
T Consensus 192 ~--~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 266 (332)
T 2ft3_A 192 P--ETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIR--MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL 266 (332)
T ss_dssp C--SSCSCCBCCSSCCCCCCT-TSSTTCTTCSCCBCCSSCCC--CCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTC
T ss_pred c--CCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCC--cCChhHhhCCCCCCEEECCCCcCeecChhhhcCccC
Confidence 2 455566666666555543 44555555555555555322 2111111 2333444444444444566666666667
Q ss_pred ceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCC
Q 045967 515 FYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALD 594 (929)
Q Consensus 515 ~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~ 594 (929)
++|++++|.+++..+..+. ... ....+..|+.|++++|.+... +..+..+..++.|+
T Consensus 267 ~~L~l~~N~l~~~~~~~~~--~~~---------------~~~~~~~l~~L~l~~N~~~~~------~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFC--PVG---------------FGVKRAYYNGISLFNNPVPYW------EVQPATFRCVTDRL 323 (332)
T ss_dssp CEEECCSSCCCBCCTTSSS--CSS---------------CCSSSCCBSEEECCSSSSCGG------GSCGGGGTTBCCST
T ss_pred CEEECCCCCCCccChhHcc--ccc---------------cccccccccceEeecCccccc------ccCcccccccchhh
Confidence 7777777766655444431 100 000123456666666665410 12345566778888
Q ss_pred EEeCCCCc
Q 045967 595 VLDLSNNR 602 (929)
Q Consensus 595 ~L~Ls~N~ 602 (929)
.+++++|+
T Consensus 324 ~l~l~~n~ 331 (332)
T 2ft3_A 324 AIQFGNYK 331 (332)
T ss_dssp TEEC----
T ss_pred hhhccccc
Confidence 88888774
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=3.7e-29 Score=290.62 Aligned_cols=382 Identities=17% Similarity=0.128 Sum_probs=235.8
Q ss_pred CCCCcEEEecCCCCCCCCccc-cccCCCCcEEeccCCCCcCcc---chhhhhccCcccEEEccCCCCCCCccccccCCCC
Q 045967 414 SKSLQNIYLSNNRLQGSIPSS-IFELVNLIDLQLDSNNFSGIA---EPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFP 489 (929)
Q Consensus 414 l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 489 (929)
+++|++|++++|+++...... +..+++|++|++++|.+++.. -+..+..+++|++|++++|.+...+.......++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 357899999999987543333 678899999999999987532 1256777899999999999543222111111222
Q ss_pred ----CcceeeccccCCC-----CCChhhhcccccceeccCCCcCCCCCchhhhc---cCCCCccEEeccccccccccc--
Q 045967 490 ----KFSYLSLFACNIS-----AFPSFLRTQDKLFYLDLSESKIDGQIPRWISK---IGKDSLSYLNLSHNFITKMKQ-- 555 (929)
Q Consensus 490 ----~L~~L~L~~n~l~-----~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~---~~~~~L~~L~Ls~N~l~~~~~-- 555 (929)
+|++|++++|.++ .++..+..+++|++|++++|.+.+..+..+.. ...++|++|++++|.+++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 5777777777776 34666677777777777777766544433311 123457777777776665432
Q ss_pred -----CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhc-----cCCCCEEeCCCCcCcCC----CccccccCcccccce
Q 045967 556 -----ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICD-----IIALDVLDLSNNRLSGT----IPECIGNFSPWLSVS 621 (929)
Q Consensus 556 -----~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~-----l~~L~~L~Ls~N~l~~~----ip~~l~~l~~ll~~~ 621 (929)
..+++|++|++++|.++ +..+..+.. .++|++|++++|.+++. ++..+..++.+ +.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~--------~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L--~~ 231 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDIN--------EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL--RE 231 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCH--------HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC--CE
T ss_pred HHHHHhhCCCCCEEECcCCCcc--------hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc--cE
Confidence 22456666666666654 322222322 34666666666666543 34444444442 35
Q ss_pred eeccCcccCCCC-----cccccCCCCCcEEEccCCcCCCC----CcccccCCCCCceeeccccccccccceeeCCCCcCc
Q 045967 622 LNLNNNELEGAN-----PQSLVNCTKLEVLDIGNNKINDV----FPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFS 692 (929)
Q Consensus 622 L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~ 692 (929)
|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++| .++
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--------------~i~ 297 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN--------------ELG 297 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC--------------CCH
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC--------------CCc
Confidence 666666554331 11222455566666666655543 2344444555555555554 443
Q ss_pred ccCCHHHHhh----hhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhcc--
Q 045967 693 GYLPARFFEK----LNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGK-- 766 (929)
Q Consensus 693 g~ip~~~~~~----l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-- 766 (929)
+..+..+... .++|+.|++++|.+.......+ ......++.|+.|++++|.+++..+..+..
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l------------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF------------SSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH------------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH------------HHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence 3322222222 2578888888777543321100 112233689999999999999876666654
Q ss_pred ---ccccceeeccCccCCC----CCCccccCcCCCCEeeCCCCcCCCCCchhhc-----cCCCCCEEECccCcCccC
Q 045967 767 ---LHSLRLLNLTHNHFTG----KIPSSLGNLAKLESLDLSSNNLAGKIPKQLA-----SLTSLSVLNISHNRLDGP 831 (929)
Q Consensus 767 ---L~~L~~L~Ls~N~l~~----~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~-----~L~~L~~L~Ls~N~l~g~ 831 (929)
.++|++|+|++|.+++ .+|..+..+++|++|||++|++++.....+. ....|+.|++.++.+...
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 6799999999999997 7888999999999999999999865333332 234688888888777543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=258.70 Aligned_cols=250 Identities=17% Similarity=0.139 Sum_probs=132.7
Q ss_pred CCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCC
Q 045967 281 LLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLS 359 (929)
Q Consensus 281 ~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls 359 (929)
+|++|++++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|++++|++++..+. +.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 455555555555544344555555555555555555555555555555555555555555544333 4555555555555
Q ss_pred CCcCCCCCCCCCcEEEcCCCCCCCCCCc--cccCCCCCcEEEccccc-CCCCCCCC--CCCCCcEEEecCCCCCCCCccc
Q 045967 360 NNQLAGPVPSHEMLIRLNNNSLSGTIPS--WLFSLPLLEYVRLSDNQ-LSGHIDEF--PSKSLQNIYLSNNRLQGSIPSS 434 (929)
Q Consensus 360 ~n~l~~~~p~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~-l~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~ 434 (929)
+|.++ .+|. .+.++++|++|++++|+ +.+..+.. .+++|++|++++|++++..|..
T Consensus 133 ~n~l~-------------------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 133 GNPYK-------------------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp TCCCS-------------------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCCCc-------------------ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence 55554 1222 45555666666666653 33322222 4556666666666666666666
Q ss_pred cccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCcccc--ccCCCCCcceeeccccCCC-----CCChh
Q 045967 435 IFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFK--IDIPFPKFSYLSLFACNIS-----AFPSF 507 (929)
Q Consensus 435 l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~~L~~L~L~~n~l~-----~lp~~ 507 (929)
+.++++|++|++++|++.... ...+..+++|++|++++|++....... .......++.+++.++.+. .+|.+
T Consensus 194 l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~ 272 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQHILLL-EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272 (353)
T ss_dssp TTTCSEEEEEEEECSCSTTHH-HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH
T ss_pred HhccccCCeecCCCCccccch-hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH
Confidence 667777777777777765442 244555677777777777443211100 0002333444444444333 35556
Q ss_pred hhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccc
Q 045967 508 LRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITK 552 (929)
Q Consensus 508 l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~ 552 (929)
+..+++|++|++++|+++...+..+ ..+++|++|++++|.+.+
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSVPDGIF--DRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCBCC
T ss_pred HhcccCCCEEECCCCCCCccCHHHH--hcCCCCCEEEeeCCCccC
Confidence 6666666666666666663222223 344555555555554443
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.7e-28 Score=291.59 Aligned_cols=233 Identities=14% Similarity=0.097 Sum_probs=124.8
Q ss_pred cccCCCCCCcEEECCCCCC---CCCCccccC------------CCCCCCEEeccCccCCCCCccccCCC--CCCCEEEcc
Q 045967 274 NSIGNLKLLGRLMLGYSQF---VGPVPASLG------------NLTQLTLLHLMHNNFSSHIPSSLSNL--VQLTCLDLS 336 (929)
Q Consensus 274 ~~l~~l~~L~~L~Ls~n~l---~~~lp~~~~------------~l~~L~~L~Ls~n~l~~~~p~~l~~L--~~L~~L~Ls 336 (929)
..+.++++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 3455678888999877532 123333333 45666666666665554444444432 236666665
Q ss_pred CCcCCC--CCCC-CCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCC
Q 045967 337 GNSFVG--EIPD-IVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFP 413 (929)
Q Consensus 337 ~N~l~~--~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 413 (929)
+|.... .++. ..++++|++|++++|.+++.... .++..+.+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--------------~l~~~~~~---------------------- 190 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK--------------WLHELAQH---------------------- 190 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH--------------HHHHHHHH----------------------
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh--------------HHHHHHhc----------------------
Confidence 554110 0000 12344444444444443311000 01112223
Q ss_pred CCCCcEEEecCCCCCC----CCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCC-ccccccC-C
Q 045967 414 SKSLQNIYLSNNRLQG----SIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLG-TTFKIDI-P 487 (929)
Q Consensus 414 l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~-~ 487 (929)
+++|++|++++|.+++ .++..+.++++|++|++++|.+.+. +..+..+++|++|+++....... +...... .
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL--VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG--HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH--HHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4455555555555542 2334455677788888888777764 25677788888888875421111 1111122 4
Q ss_pred CCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCch-hhhccCCCCccEEecc
Q 045967 488 FPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPR-WISKIGKDSLSYLNLS 546 (929)
Q Consensus 488 ~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~L~~L~Ls 546 (929)
+++|+.|.+.++....+|..+..+++|++|++++|.+++.... .+ ..+++|++|+++
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~--~~~~~L~~L~L~ 326 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI--QKCPNLEVLETR 326 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH--TTCTTCCEEEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH--HhCcCCCEEecc
Confidence 5667777776665556777777788888888888776543322 12 455666666666
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.4e-25 Score=267.00 Aligned_cols=299 Identities=19% Similarity=0.245 Sum_probs=206.7
Q ss_pred cccCCCCCCCCCCCCcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCC
Q 045967 201 PKMISWKKDTNYCSWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLK 280 (929)
Q Consensus 201 ~~l~sW~~~~~~C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~ 280 (929)
...++|..+.+||.|+|..|.-.. . ..+...+++.|++++++++ .+|..+. +
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~-------~--~~c~~~~l~~L~ls~n~L~-----------------~lp~~l~--~ 61 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQK-------M--RACLNNGNAVLNVGESGLT-----------------TLPDCLP--A 61 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHH-------H--HHHHHHCCCEEECCSSCCS-----------------CCCSCCC--T
T ss_pred HHHHHHHhcCCcchhccccccCcc-------c--ccccCCCCcEEEecCCCcC-----------------ccChhhC--C
Confidence 356789878899999876542110 0 0011125889999998874 3344443 7
Q ss_pred CCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCC
Q 045967 281 LLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSN 360 (929)
Q Consensus 281 ~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~ 360 (929)
+|++|++++|.+++ +|. .+++|++|+|++|++++ +|. .+++|++|++++|.+++..+ .+++|+.|++++
T Consensus 62 ~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 62 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS
T ss_pred CCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC
Confidence 88999999998874 665 56889999999998874 554 67888889998888876433 567777887777
Q ss_pred CcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCC
Q 045967 361 NQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVN 440 (929)
Q Consensus 361 n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 440 (929)
|++++ +|.. +++|++|++++|++++.. . .+.+|+.|++++|.+++ +| ..+++
T Consensus 131 N~l~~-------------------lp~~---l~~L~~L~Ls~N~l~~l~-~-~~~~L~~L~L~~N~l~~-l~---~~~~~ 182 (622)
T 3g06_A 131 NQLTS-------------------LPVL---PPGLQELSVSDNQLASLP-A-LPSELCKLWAYNNQLTS-LP---MLPSG 182 (622)
T ss_dssp SCCSC-------------------CCCC---CTTCCEEECCSSCCSCCC-C-CCTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred CCCCc-------------------CCCC---CCCCCEEECcCCcCCCcC-C-ccCCCCEEECCCCCCCC-Cc---ccCCC
Confidence 77762 3332 367788888888777532 2 34677777777777774 44 34567
Q ss_pred CcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccC
Q 045967 441 LIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLS 520 (929)
Q Consensus 441 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls 520 (929)
|+.|++++|+++++.. .+++|+.|++++|.+ +.+|.. +++|+.|+++
T Consensus 183 L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l-------------------------~~l~~~---~~~L~~L~Ls 229 (622)
T 3g06_A 183 LQELSVSDNQLASLPT-----LPSELYKLWAYNNRL-------------------------TSLPAL---PSGLKELIVS 229 (622)
T ss_dssp CCEEECCSSCCSCCCC-----CCTTCCEEECCSSCC-------------------------SSCCCC---CTTCCEEECC
T ss_pred CcEEECCCCCCCCCCC-----ccchhhEEECcCCcc-------------------------cccCCC---CCCCCEEEcc
Confidence 7777777777776421 235666666666643 334432 3567777777
Q ss_pred CCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCC
Q 045967 521 ESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSN 600 (929)
Q Consensus 521 ~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~ 600 (929)
+|.+++ +| ..+++|+.|++++|.++.++. .+++|+.|++++|.++ .+|..+.++++|+.|++++
T Consensus 230 ~N~L~~-lp-----~~l~~L~~L~Ls~N~L~~lp~-~~~~L~~L~Ls~N~L~---------~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 230 GNRLTS-LP-----VLPSELKELMVSGNRLTSLPM-LPSGLLSLSVYRNQLT---------RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp SSCCSC-CC-----CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCC---------SCCGGGGGSCTTCEEECCS
T ss_pred CCccCc-CC-----CCCCcCcEEECCCCCCCcCCc-ccccCcEEeCCCCCCC---------cCCHHHhhccccCEEEecC
Confidence 777765 33 234678888888888876665 6678889999999885 4677888999999999999
Q ss_pred CcCcCCCccccccCc
Q 045967 601 NRLSGTIPECIGNFS 615 (929)
Q Consensus 601 N~l~~~ip~~l~~l~ 615 (929)
|++++..|..+..+.
T Consensus 294 N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 294 NPLSERTLQALREIT 308 (622)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHhcc
Confidence 999988887766544
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=5.7e-28 Score=289.91 Aligned_cols=433 Identities=13% Similarity=0.078 Sum_probs=247.8
Q ss_pred CCCCCcccccCCCC-cccc---cCchhhhhcCCCCceEEEcCCCCC---CCCCCcccccccccccccccccccCCCCCCc
Q 045967 211 NYCSWDGLTCDMAT-VSLE---TPVFQALVQNMTKLQVLSLASLEM---STVVPDSLKNLSSSLTFSELANSIGNLKLLG 283 (929)
Q Consensus 211 ~~C~W~Gv~C~~~~-~~~~---~~~~~~~l~~l~~L~~L~Ls~~~l---~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~ 283 (929)
-|++|.++.+.... ..+. ....+..+.++++|++|+|+++.. .+.+|..++... ...++....++++|+
T Consensus 40 vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~----~~~l~~l~~~~~~L~ 115 (592)
T 3ogk_B 40 VCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYV----TPWVTEISNNLRQLK 115 (592)
T ss_dssp SCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBC----HHHHHHHHHHCTTCC
T ss_pred HhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccc----hHHHHHHHhhCCCCC
Confidence 45578888653221 1111 122455677889999999988642 123333222210 011222233789999
Q ss_pred EEECCCCCCCCCCccccCCC--CCCCEEeccCccC-CC-CCccccCCCCCCCEEEccCCcCCCCC----CC-CCCCCCCC
Q 045967 284 RLMLGYSQFVGPVPASLGNL--TQLTLLHLMHNNF-SS-HIPSSLSNLVQLTCLDLSGNSFVGEI----PD-IVNLTQVS 354 (929)
Q Consensus 284 ~L~Ls~n~l~~~lp~~~~~l--~~L~~L~Ls~n~l-~~-~~p~~l~~L~~L~~L~Ls~N~l~~~~----p~-l~~L~~L~ 354 (929)
+|+|++|.+++..+..++.. .+|++|+|++|.- +. .++....++++|++|+|++|.+++.. +. ..++++|+
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~ 195 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCC
T ss_pred eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCcc
Confidence 99999999887666666653 4599999999862 21 12233457899999999999987652 22 45789999
Q ss_pred EEeCCCCcCCCCC----C------CCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCC---CCC--CCCCCCcE
Q 045967 355 FFDLSNNQLAGPV----P------SHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGH---IDE--FPSKSLQN 419 (929)
Q Consensus 355 ~L~Ls~n~l~~~~----p------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~~~--~~l~~L~~ 419 (929)
+|++++|.+++.. + ..|+.|++++|.+.+ +|..+.++++|++|+++.+..... ... ..+++|+.
T Consensus 196 ~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~ 274 (592)
T 3ogk_B 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274 (592)
T ss_dssp EEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCE
T ss_pred EEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccc
Confidence 9999999987321 1 227888888887775 567777788888888875332211 111 15677888
Q ss_pred EEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccC-CCCCcceeeccc
Q 045967 420 IYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKFSYLSLFA 498 (929)
Q Consensus 420 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~L~~ 498 (929)
|+++++.. +.+|..+..+++|++|++++|.+++......+..+++|++|+++++ +. .+.++... .+++|++|++.+
T Consensus 275 L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~-~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 275 LGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IG-DRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp EEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH-HHHHHHHHHHCTTCCEEEEEC
T ss_pred cCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cC-HHHHHHHHHhCCCCCEEEeec
Confidence 88877543 3667777777888888888877655433234567778888887733 11 11111111 344555555552
Q ss_pred -----------cCCC--CCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEE
Q 045967 499 -----------CNIS--AFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLD 565 (929)
Q Consensus 499 -----------n~l~--~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~ 565 (929)
+.++ .++.....+++|++|+++.|.+++..+..+ .. .+++|+.|+
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l--~~--------------------~~~~L~~L~ 409 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI--GT--------------------YLKNLCDFR 409 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH--HH--------------------HCCSCCEEE
T ss_pred CccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH--Hh--------------------hCCCCcEEE
Confidence 2222 122223334455555554444444333333 11 234455555
Q ss_pred cC----CCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCc--CcCCCcccccc-CcccccceeeccCcccCCC-Ccccc
Q 045967 566 LR----SNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNR--LSGTIPECIGN-FSPWLSVSLNLNNNELEGA-NPQSL 637 (929)
Q Consensus 566 Ls----~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~--l~~~ip~~l~~-l~~ll~~~L~Ls~N~l~~~-~p~~~ 637 (929)
++ .|.+++... ...++..+..+++|+.|++++|. +++..+..+.. ++. + +.|++++|.+++. ++..+
T Consensus 410 l~~~~~~n~l~~~p~---~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~-L-~~L~L~~n~l~~~~~~~~~ 484 (592)
T 3ogk_B 410 LVLLDREERITDLPL---DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN-V-RWMLLGYVGESDEGLMEFS 484 (592)
T ss_dssp EEECSCCSCCSSCCC---HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT-C-CEEEECSCCSSHHHHHHHH
T ss_pred EeecCCCccccCchH---HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc-c-eEeeccCCCCCHHHHHHHH
Confidence 53 334431100 00133334456666666665432 44443333333 232 2 3666666665542 23345
Q ss_pred cCCCCCcEEEccCCcCCCC-CcccccCCCCCceeeccccccc
Q 045967 638 VNCTKLEVLDIGNNKINDV-FPYWLGNLPELRVLVLRSNKLR 678 (929)
Q Consensus 638 ~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~ 678 (929)
.++++|++|++++|.+++. ++.....+++|+.|++++|+++
T Consensus 485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 6677788888888877544 2333456777777777777665
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=250.24 Aligned_cols=276 Identities=20% Similarity=0.221 Sum_probs=187.9
Q ss_pred CCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc---CCCCCccEE
Q 045967 488 FPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYL 564 (929)
Q Consensus 488 ~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~---~~~~~L~~L 564 (929)
++.....+.++++++.+|..+. ++|++|++++|.+++..+..+ ..+++|++|++++|.++++.+ ..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDL--QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHh--ccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3444445666667777776543 478888888888876655566 677788888888888777765 345677888
Q ss_pred EcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCcc--ccccCcccccceeeccCc-ccCCCCcccccCCC
Q 045967 565 DLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPE--CIGNFSPWLSVSLNLNNN-ELEGANPQSLVNCT 641 (929)
Q Consensus 565 ~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~ll~~~L~Ls~N-~l~~~~p~~~~~l~ 641 (929)
++++|.++ +..+..+.++++|++|++++|++++ +|. .+..++.+ +.|++++| .+.+..+..+.+++
T Consensus 106 ~Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L--~~L~l~~n~~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 106 DLSYNYLS--------NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKL--QILRVGNMDTFTKIQRKDFAGLT 174 (353)
T ss_dssp ECCSSCCS--------SCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTC--CEEEEEESSSCCEECTTTTTTCC
T ss_pred ECCCCcCC--------cCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCC--cEEECCCCccccccCHHHccCCC
Confidence 88888776 3233346777888888888888773 443 56666653 47777777 35555566777777
Q ss_pred CCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCc
Q 045967 642 KLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGE 721 (929)
Q Consensus 642 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~ 721 (929)
+|++|++++|++++..|..+..+++|++|++++|+++ .+|...+..
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---------------~~~~~~~~~------------------- 220 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI---------------LLLEIFVDV------------------- 220 (353)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST---------------THHHHHHHH-------------------
T ss_pred CCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc---------------cchhhhhhh-------------------
Confidence 7778888877777777777777777777666666543 344444333
Q ss_pred cccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhc---cccccceeeccCccCCC----CCCccccCcCCC
Q 045967 722 EYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIG---KLHSLRLLNLTHNHFTG----KIPSSLGNLAKL 794 (929)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~---~L~~L~~L~Ls~N~l~~----~ip~~l~~L~~L 794 (929)
+++|+.|++++|++++..+..+. ....++.++|++|.+++ .+|..+..+++|
T Consensus 221 ---------------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 221 ---------------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp ---------------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred ---------------------cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 34556666666666654433332 34566777777777765 467778888888
Q ss_pred CEeeCCCCcCCCCCchh-hccCCCCCEEECccCcCccCCCC
Q 045967 795 ESLDLSSNNLAGKIPKQ-LASLTSLSVLNISHNRLDGPIPQ 834 (929)
Q Consensus 795 ~~LdLs~N~ls~~ip~~-l~~L~~L~~L~Ls~N~l~g~iP~ 834 (929)
+.|||++|+++. +|.. |.++++|++|++++|++.|.+|.
T Consensus 280 ~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 280 LELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 888888888884 4544 57888888888888888887763
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=3e-25 Score=243.09 Aligned_cols=245 Identities=21% Similarity=0.288 Sum_probs=171.9
Q ss_pred CCCcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCccccccccccccccccc-ccCCCCCCcEEECCCCC
Q 045967 213 CSWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELAN-SIGNLKLLGRLMLGYSQ 291 (929)
Q Consensus 213 C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~-~l~~l~~L~~L~Ls~n~ 291 (929)
|.|.+|.|+..++. .+|..+ .+++++|+|++|.+.+ +|. .+.++++|++|++++|.
T Consensus 7 C~~~~l~c~~~~l~----~ip~~~--~~~l~~L~L~~n~l~~-----------------i~~~~~~~l~~L~~L~L~~n~ 63 (306)
T 2z66_A 7 CSGTEIRCNSKGLT----SVPTGI--PSSATRLELESNKLQS-----------------LPHGVFDKLTQLTKLSLSSNG 63 (306)
T ss_dssp EETTEEECCSSCCS----SCCSCC--CTTCCEEECCSSCCCC-----------------CCTTTTTTCTTCSEEECCSSC
T ss_pred eCCCEEEcCCCCcc----cCCCCC--CCCCCEEECCCCccCc-----------------cCHhHhhccccCCEEECCCCc
Confidence 78999999865432 223322 2578999999988743 222 35677899999999998
Q ss_pred CCCC--CccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCC--CCCCCCCCCEEeCCCCcCCCCC
Q 045967 292 FVGP--VPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIP--DIVNLTQVSFFDLSNNQLAGPV 367 (929)
Q Consensus 292 l~~~--lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p--~l~~L~~L~~L~Ls~n~l~~~~ 367 (929)
++.. .|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+++..+ .+.++++|++|++++|.+++
T Consensus 64 l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-- 140 (306)
T 2z66_A 64 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-- 140 (306)
T ss_dssp CCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE--
T ss_pred cCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc--
Confidence 8742 3666777899999999999887 467778889999999999999887665 37888888888888887663
Q ss_pred CCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCC-CCCCC--CCCCCcEEEecCCCCCCCCccccccCCCCcEE
Q 045967 368 PSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSG-HIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDL 444 (929)
Q Consensus 368 p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 444 (929)
..+..+.++++|++|++++|.+++ ..+.. .+++|++|++++|++++..|..+..+++|++|
T Consensus 141 ----------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 141 ----------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp ----------------CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ----------------cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 344556677777777777777765 23333 66777777777777776667777777777777
Q ss_pred eccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccC-CC-CCcceeeccccCCC
Q 045967 445 QLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PF-PKFSYLSLFACNIS 502 (929)
Q Consensus 445 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~-~~L~~L~L~~n~l~ 502 (929)
++++|++++..+ ..+..+++|++|++++|++ .+..+..+ .+ ++|++|++++|.++
T Consensus 205 ~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 205 NMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp ECTTSCCSBCCS-GGGTTCTTCCEEECTTSCC--CBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ECCCCccCccCh-hhccCcccCCEeECCCCCC--cccCHHHHHhhhccCCEEEccCCCee
Confidence 777777776654 4567777777777777743 33332222 22 24455555554443
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.2e-24 Score=251.90 Aligned_cols=251 Identities=22% Similarity=0.219 Sum_probs=186.7
Q ss_pred cEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccc
Q 045967 541 SYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSV 620 (929)
Q Consensus 541 ~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~ 620 (929)
..++.+++.++.++..-.+++++|++++|.++ +..+..+.++++|++|++++|++++..|..+..+.++ +
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~--------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--~ 126 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQ--------MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL--N 126 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCC--------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC--C
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCc--------eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccC--C
Confidence 34444444454444433455666666666665 4445566667777777777777776666666666653 4
Q ss_pred eeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHH
Q 045967 621 SLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFF 700 (929)
Q Consensus 621 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~ 700 (929)
.|++++|.+++..+..|.++++|++|+|++|++++..+..+..+++|+.|++++|+. .+.++...|
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~--------------l~~i~~~~~ 192 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK--------------LEYISEGAF 192 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT--------------CCEECTTTT
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC--------------ccccChhhc
Confidence 677777777766666677777777777777777776666777777777766665321 224555556
Q ss_pred hhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccC
Q 045967 701 EKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHF 780 (929)
Q Consensus 701 ~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l 780 (929)
.++++|+.|++++|.+..++.. ..+++|+.|+|++|++++..|..|.++++|++|+|++|++
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMPNL------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCCCC------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred cCCCCCCEEECCCCcccccccc------------------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 6677777777777766554321 1267899999999999999999999999999999999999
Q ss_pred CCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCC
Q 045967 781 TGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIP 833 (929)
Q Consensus 781 ~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP 833 (929)
++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+.
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 99999999999999999999999998888889999999999999999987665
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=6.4e-25 Score=242.80 Aligned_cols=234 Identities=19% Similarity=0.233 Sum_probs=176.3
Q ss_pred CCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCC
Q 045967 489 PKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRS 568 (929)
Q Consensus 489 ~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~ 568 (929)
+.++.|++++|+++.+|..+..+++|++|++++|.+. .+|..+ ..++ +|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~--~~l~---------------------~L~~L~Ls~ 136 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM--QQFA---------------------GLETLTLAR 136 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG--GGGT---------------------TCSEEEEES
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH--hccC---------------------CCCEEECCC
Confidence 3444444444444555655666666666666666665 455444 3333 445555555
Q ss_pred CCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEc
Q 045967 569 NLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDI 648 (929)
Q Consensus 569 N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 648 (929)
|.++ .+|..+..+++|++|++++|++.+.+|..+.... .+..+.++++|++|++
T Consensus 137 n~l~---------~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~-----------------~~~~~~~l~~L~~L~L 190 (328)
T 4fcg_A 137 NPLR---------ALPASIASLNRLRELSIRACPELTELPEPLASTD-----------------ASGEHQGLVNLQSLRL 190 (328)
T ss_dssp CCCC---------CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC------------------CCCEEESTTCCEEEE
T ss_pred Cccc---------cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc-----------------chhhhccCCCCCEEEC
Confidence 5553 3556777888888888888888877776553311 1234677899999999
Q ss_pred cCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccce
Q 045967 649 GNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSV 728 (929)
Q Consensus 649 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~ 728 (929)
++|+++ .+|..++.+++|++|++++|+++ .+|..+ .
T Consensus 191 ~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~---------------~l~~~l-~--------------------------- 226 (328)
T 4fcg_A 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS---------------ALGPAI-H--------------------------- 226 (328)
T ss_dssp EEECCC-CCCGGGGGCTTCCEEEEESSCCC---------------CCCGGG-G---------------------------
T ss_pred cCCCcC-cchHhhcCCCCCCEEEccCCCCC---------------cCchhh-c---------------------------
Confidence 999998 56888999999998888777665 344321 1
Q ss_pred EEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCC
Q 045967 729 VVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKI 808 (929)
Q Consensus 729 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~i 808 (929)
.+++|+.|++++|++.+.+|..++++++|++|+|++|++.+.+|..++++++|++|+|++|++.+.+
T Consensus 227 -------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 227 -------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp -------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred -------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 1578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccCCCCCEEECccCcCc
Q 045967 809 PKQLASLTSLSVLNISHNRLD 829 (929)
Q Consensus 809 p~~l~~L~~L~~L~Ls~N~l~ 829 (929)
|..+.++++|+.+++..|.+.
T Consensus 294 P~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGSC
T ss_pred cHHHhhccCceEEeCCHHHHH
Confidence 999999999999999987764
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=249.62 Aligned_cols=250 Identities=22% Similarity=0.244 Sum_probs=176.2
Q ss_pred EEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccce
Q 045967 542 YLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVS 621 (929)
Q Consensus 542 ~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~ 621 (929)
.++.+++.++.++....++++.|++++|+++ +..+..+.++++|++|++++|++++..+..+..++.+ +.
T Consensus 47 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~--------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L--~~ 116 (440)
T 3zyj_A 47 KVICVRKNLREVPDGISTNTRLLNLHENQIQ--------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL--NT 116 (440)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSCCCC--------EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC--CE
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEEccCCcCC--------eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccC--CE
Confidence 3444444444444433445555555555554 3333455566666666666666665555555555553 36
Q ss_pred eeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHh
Q 045967 622 LNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFE 701 (929)
Q Consensus 622 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~ 701 (929)
|++++|.+++..+..|.++++|++|++++|+++...+..|..+++|++|++++|+. .+.++...|.
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~--------------l~~i~~~~~~ 182 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR--------------LSYISEGAFE 182 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT--------------CCEECTTTTT
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC--------------cceeCcchhh
Confidence 66666666665555666667777777777777666666666666666665555321 1244545556
Q ss_pred hhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCC
Q 045967 702 KLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFT 781 (929)
Q Consensus 702 ~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~ 781 (929)
++++|+.|++++|.+..++.. ..+++|+.|+|++|++++..|..|.++++|++|+|++|+++
T Consensus 183 ~l~~L~~L~L~~n~l~~~~~~------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLREIPNL------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp TCSSCCEEECTTSCCSSCCCC------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred cccccCeecCCCCcCcccccc------------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 666666666666666544320 12678999999999999999999999999999999999999
Q ss_pred CCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCC
Q 045967 782 GKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIP 833 (929)
Q Consensus 782 ~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP 833 (929)
+..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+.
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999999999999999999999998888889999999999999999987654
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.4e-24 Score=237.86 Aligned_cols=253 Identities=22% Similarity=0.270 Sum_probs=178.0
Q ss_pred eeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEcCCCCCC
Q 045967 493 YLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQ 572 (929)
Q Consensus 493 ~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~ 572 (929)
.++..+++++.+|..+ .++|++|++++|.+....+..+ ..+++|++|++++|.++..
T Consensus 11 ~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~--~~l~~L~~L~L~~n~l~~~------------------- 67 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVF--DKLTQLTKLSLSSNGLSFK------------------- 67 (306)
T ss_dssp EEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTT--TTCTTCSEEECCSSCCCEE-------------------
T ss_pred EEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHh--hccccCCEEECCCCccCcc-------------------
Confidence 3445555555666533 2466677777776664433334 4555555555555554432
Q ss_pred CCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCc-ccccCCCCCcEEEccCC
Q 045967 573 GPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANP-QSLVNCTKLEVLDIGNN 651 (929)
Q Consensus 573 ~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N 651 (929)
+..+..+..+++|++|++++|.++ .+|..+..++.+ +.|++++|.+.+..+ ..+..+++|++|++++|
T Consensus 68 --------~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 68 --------GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL--EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp --------EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTC--CEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred --------cCcccccccccccCEEECCCCccc-cChhhcCCCCCC--CEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence 112344445555666666666555 344445555442 356666666655544 56778888999999999
Q ss_pred cCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEE
Q 045967 652 KINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVT 731 (929)
Q Consensus 652 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~ 731 (929)
.+++..+..+..+++|++|++++|.+++. .+|.. +
T Consensus 137 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~-~------------------------------- 171 (306)
T 2z66_A 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQEN-------------FLPDI-F------------------------------- 171 (306)
T ss_dssp CCEECSTTTTTTCTTCCEEECTTCEEGGG-------------EECSC-C-------------------------------
T ss_pred cCCccchhhcccCcCCCEEECCCCccccc-------------cchhH-H-------------------------------
Confidence 98888888888888888887777765410 12210 0
Q ss_pred ecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchh
Q 045967 732 LKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQ 811 (929)
Q Consensus 732 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~ 811 (929)
..+++|+.|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.|||++|++++..|..
T Consensus 172 ---------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 172 ---------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp ---------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ---------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 11578899999999999888999999999999999999999888888999999999999999999999999
Q ss_pred hccC-CCCCEEECccCcCccCCC
Q 045967 812 LASL-TSLSVLNISHNRLDGPIP 833 (929)
Q Consensus 812 l~~L-~~L~~L~Ls~N~l~g~iP 833 (929)
+..+ ++|++|++++|++++.++
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGG
T ss_pred HHhhhccCCEEEccCCCeecccC
Confidence 9998 499999999999998765
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=1e-24 Score=236.29 Aligned_cols=230 Identities=21% Similarity=0.223 Sum_probs=170.4
Q ss_pred cEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccc
Q 045967 541 SYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSV 620 (929)
Q Consensus 541 ~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~ 620 (929)
+.++.+++.++.++....++|++|++++|.++ +..+..+..+++|++|++++|++++..|..+..++.+ +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~--------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRIS--------HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL--E 83 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCC--------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC--C
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCC--------ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCC--C
Confidence 34455555555544444456666666666665 3333456677777777777777776666666666653 4
Q ss_pred eeeccCcc-cCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHH
Q 045967 621 SLNLNNNE-LEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARF 699 (929)
Q Consensus 621 ~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~ 699 (929)
.|++++|. +....+..+.++++|++|++++|.+++..+..+..+++|++|++++|+++ .++...
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~ 148 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ---------------ALPDDT 148 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------CCCTTT
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc---------------ccCHhH
Confidence 77777776 66666777788888888888888888877777888888887777666554 233221
Q ss_pred HhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCcc
Q 045967 700 FEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNH 779 (929)
Q Consensus 700 ~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 779 (929)
+. .+++|+.|++++|++++..+..+.++++|++|+|++|.
T Consensus 149 ~~----------------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 149 FR----------------------------------------DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp TT----------------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hc----------------------------------------cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 11 15678888899998887777778899999999999999
Q ss_pred CCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCCC
Q 045967 780 FTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQG 835 (929)
Q Consensus 780 l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~ 835 (929)
+++..|..|..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.++..
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 99888999999999999999999999877788999999999999999998877643
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1.4e-23 Score=227.47 Aligned_cols=196 Identities=24% Similarity=0.264 Sum_probs=111.9
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCc-CCCCCCC-CCCCCCCCEEe
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNS-FVGEIPD-IVNLTQVSFFD 357 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~-l~~~~p~-l~~L~~L~~L~ 357 (929)
++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|. +....+. +.++++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555554444445555555555555555554445555555555555555554 4333232 44555555555
Q ss_pred CCCCcCCCCCCCC------CcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCCCCC
Q 045967 358 LSNNQLAGPVPSH------EMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQG 429 (929)
Q Consensus 358 Ls~n~l~~~~p~~------L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~ 429 (929)
+++|.+++..|.. |++|++++|.+++..+..+.++++|++|++++|++++..+.. .+++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 5555544322211 333333333333334445666777777777777776544432 56677777777777776
Q ss_pred CCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCC
Q 045967 430 SIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSL 476 (929)
Q Consensus 430 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 476 (929)
..|..+.++++|+.|++++|++++..+ ..+..+++|++|++++|++
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCE
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCc
Confidence 667777777777777777777776543 5567777777777777743
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3.8e-23 Score=246.21 Aligned_cols=263 Identities=23% Similarity=0.278 Sum_probs=160.0
Q ss_pred CcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEE
Q 045967 464 IKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYL 543 (929)
Q Consensus 464 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L 543 (929)
.+++.|++++|.+. .++.... ++|+.|++++|+++.+|. .+++|++|++++|++++ +|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~---~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT---TLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV-----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS---CCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC-----CCTTCCEE
T ss_pred CCCcEEEecCCCcC---ccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC-----CCCCCCEE
Confidence 35778888887543 3333333 567777777777766665 45667777777776653 332 33566666
Q ss_pred ecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceee
Q 045967 544 NLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLN 623 (929)
Q Consensus 544 ~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~ 623 (929)
++++|.+++++. .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|..+.++ ..|+
T Consensus 107 ~Ls~N~l~~l~~-~l~~L~~L~L~~N~l~~---------lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L-----~~L~ 167 (622)
T 3g06_A 107 SIFSNPLTHLPA-LPSGLCKLWIFGNQLTS---------LPVL---PPGLQELSVSDNQLAS-LPALPSEL-----CKLW 167 (622)
T ss_dssp EECSCCCCCCCC-CCTTCCEEECCSSCCSC---------CCCC---CTTCCEEECCSSCCSC-CCCCCTTC-----CEEE
T ss_pred ECcCCcCCCCCC-CCCCcCEEECCCCCCCc---------CCCC---CCCCCEEECcCCcCCC-cCCccCCC-----CEEE
Confidence 666666666554 45566666666666642 2221 2556666666666652 33322111 2455
Q ss_pred ccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhh
Q 045967 624 LNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKL 703 (929)
Q Consensus 624 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l 703 (929)
+++|.+++. | ..+++|+.|++++|+++++ |.. +++|+.|++++|.+
T Consensus 168 L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l-~~~---~~~L~~L~L~~N~l-------------------------- 213 (622)
T 3g06_A 168 AYNNQLTSL-P---MLPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRL-------------------------- 213 (622)
T ss_dssp CCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCC--------------------------
T ss_pred CCCCCCCCC-c---ccCCCCcEEECCCCCCCCC-CCc---cchhhEEECcCCcc--------------------------
Confidence 555555543 2 2345555555555555543 211 23444443333333
Q ss_pred hcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCC
Q 045967 704 NAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGK 783 (929)
Q Consensus 704 ~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ 783 (929)
..++. .+++|+.|++++|++++ +| ..+++|++|+|++|+|+ .
T Consensus 214 -------------~~l~~--------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~ 255 (622)
T 3g06_A 214 -------------TSLPA--------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-S 255 (622)
T ss_dssp -------------SSCCC--------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-C
T ss_pred -------------cccCC--------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-c
Confidence 22221 03567888888888885 55 45678888888888888 5
Q ss_pred CCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCC
Q 045967 784 IPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQ 834 (929)
Q Consensus 784 ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~ 834 (929)
+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+++|.+|.
T Consensus 256 lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 665 5678888888888888 6788888888888888888888887764
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=4.8e-25 Score=242.24 Aligned_cols=249 Identities=18% Similarity=0.179 Sum_probs=164.3
Q ss_pred hcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccc-c---C-------CCCCccEEEcCCCCCCCCCCC
Q 045967 509 RTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMK-Q---I-------SWKNLGYLDLRSNLLQGPLPV 577 (929)
Q Consensus 509 ~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~-~---~-------~~~~L~~L~Ls~N~l~~~~~~ 577 (929)
+..++|+++++++|.+ .+|..+. . .|+.|++++|.++... + . .+++|++|++++|.++
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~--~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----- 108 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFT--D--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT----- 108 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHH--H--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB-----
T ss_pred ccCCCceeEeeccccc--ccHHHHH--H--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc-----
Confidence 3445566666666666 4555442 1 1666666666664321 1 0 3556666666666666
Q ss_pred CCCcccchhh--hccCCCCEEeCCCCcCcCCCccccccC-----cccccceeeccCcccCCCCcccccCCCCCcEEEccC
Q 045967 578 PPSREIIHSI--CDIIALDVLDLSNNRLSGTIPECIGNF-----SPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGN 650 (929)
Q Consensus 578 ~~~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~l~~l-----~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 650 (929)
+.+|..+ ..+++|++|++++|++++. |..++.+ +.+ ++|++++|.+.+..+..+.++++|++|++++
T Consensus 109 ---~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L--~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 109 ---GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGL--KVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182 (312)
T ss_dssp ---SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTC--CEEEEESCSCCCCCTTTCCCCSSCCEEECCS
T ss_pred ---chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCC--cEEEeeCCCCccchHHHhccCCCCCEEECCC
Confidence 4444444 6677777777777777765 6655554 332 3666666666666666666666677777777
Q ss_pred CcCCCC--Ccccc--cCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCcccccc
Q 045967 651 NKINDV--FPYWL--GNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQD 726 (929)
Q Consensus 651 N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~ 726 (929)
|++.+. .+..+ ..+++|++|++++|++++ + +.++...
T Consensus 183 N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~-~~~~~~~--------------------------- 223 (312)
T 1wwl_A 183 NPELGERGLISALCPLKFPTLQVLALRNAGMET-----------P-SGVCSAL--------------------------- 223 (312)
T ss_dssp CTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-----------H-HHHHHHH---------------------------
T ss_pred CCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-----------h-HHHHHHH---------------------------
Confidence 666553 12222 556666665555554430 0 0111111
Q ss_pred ceEEEecCchhhHhhhcccccEeeccccccCcccc-hhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCC
Q 045967 727 SVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEIS-QVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLA 805 (929)
Q Consensus 727 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls 805 (929)
...+++|+.|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++|||++|+++
T Consensus 224 -------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 224 -------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp -------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCC
T ss_pred -------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCC
Confidence 1225788999999999998775 55677899999999999999 7888776 89999999999999
Q ss_pred CCCchhhccCCCCCEEECccCcCccC
Q 045967 806 GKIPKQLASLTSLSVLNISHNRLDGP 831 (929)
Q Consensus 806 ~~ip~~l~~L~~L~~L~Ls~N~l~g~ 831 (929)
+. |. +..+++|++|++++|++++.
T Consensus 288 ~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 288 RN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 76 66 89999999999999999863
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2.8e-25 Score=244.70 Aligned_cols=249 Identities=21% Similarity=0.196 Sum_probs=167.8
Q ss_pred hhhcccccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc-CCCCCccEEEcCCCCCCCCCCCCCCcccch
Q 045967 507 FLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRSNLLQGPLPVPPSREIIH 585 (929)
Q Consensus 507 ~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~ 585 (929)
.+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+++|++|++++|.++ .+
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~---------~l-- 95 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADL--APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ---------EL-- 95 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHH--TTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEE---------EE--
T ss_pred HhccCCCCCEEECcCCccCcCCHHHh--hCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccc---------cc--
Confidence 34556788888888888888777777 777888888888888776654 45667777777777765 11
Q ss_pred hhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccc-cCC
Q 045967 586 SICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWL-GNL 664 (929)
Q Consensus 586 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l 664 (929)
...++|++|++++|++++..+..+ +.+ +.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+
T Consensus 96 --~~~~~L~~L~l~~n~l~~~~~~~~---~~L--~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 168 (317)
T 3o53_A 96 --LVGPSIETLHAANNNISRVSCSRG---QGK--KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (317)
T ss_dssp --EECTTCCEEECCSSCCSEEEECCC---SSC--EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred --cCCCCcCEEECCCCccCCcCcccc---CCC--CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence 133667777777777764433322 221 355555555555555555555556666666665555544444 245
Q ss_pred CCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcc
Q 045967 665 PELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILT 744 (929)
Q Consensus 665 ~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 744 (929)
++|++|++++|+++ .++... .++
T Consensus 169 ~~L~~L~L~~N~l~---------------------------------------~~~~~~------------------~l~ 191 (317)
T 3o53_A 169 DTLEHLNLQYNFIY---------------------------------------DVKGQV------------------VFA 191 (317)
T ss_dssp TTCCEEECTTSCCC---------------------------------------EEECCC------------------CCT
T ss_pred CcCCEEECCCCcCc---------------------------------------cccccc------------------ccc
Confidence 55555554444433 221100 156
Q ss_pred cccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCC-CCCchhhccCCCCCEEEC
Q 045967 745 VFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLA-GKIPKQLASLTSLSVLNI 823 (929)
Q Consensus 745 ~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls-~~ip~~l~~L~~L~~L~L 823 (929)
+|+.|++++|++++. |..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.++ +.+|..+..++.|+.+++
T Consensus 192 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 192 KLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp TCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred cCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 788889999988854 445888899999999999988 56778888899999999999988 777888888888888888
Q ss_pred c-cCcCccCCCC
Q 045967 824 S-HNRLDGPIPQ 834 (929)
Q Consensus 824 s-~N~l~g~iP~ 834 (929)
+ .+.++|..|.
T Consensus 270 ~~~~~l~~~~~~ 281 (317)
T 3o53_A 270 QTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHSSSSC
T ss_pred CCchhccCCchh
Confidence 8 4466666554
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=5e-25 Score=242.67 Aligned_cols=237 Identities=19% Similarity=0.180 Sum_probs=129.7
Q ss_pred cEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCc
Q 045967 283 GRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQ 362 (929)
Q Consensus 283 ~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~ 362 (929)
+.++++.+.+...++..+..+++|++|+|++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc
Confidence 334444444433333333444555555555555555545555555555555555555554333 5555555555555555
Q ss_pred CCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCc
Q 045967 363 LAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLI 442 (929)
Q Consensus 363 l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 442 (929)
+++ +...++|++|++++|++++..+. .+++|++|++++|++++..+..+..+++|+
T Consensus 92 l~~-----------------------l~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 92 VQE-----------------------LLVGPSIETLHAANNNISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp EEE-----------------------EEECTTCCEEECCSSCCSEEEEC-CCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred ccc-----------------------ccCCCCcCEEECCCCccCCcCcc-ccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence 441 11225566666666665543322 355677777777777766666777777888
Q ss_pred EEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceeccCCC
Q 045967 443 DLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSES 522 (929)
Q Consensus 443 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N 522 (929)
+|++++|.+++..+...+..+++|++|++++|.+. +. +....+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~--~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC--EE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred EEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc--cc-ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC
Confidence 88888888777655333346777888888877543 21 2222355555555555555555555555566666666666
Q ss_pred cCCCCCchhhhccCCCCccEEecccccc
Q 045967 523 KIDGQIPRWISKIGKDSLSYLNLSHNFI 550 (929)
Q Consensus 523 ~l~~~~p~~l~~~~~~~L~~L~Ls~N~l 550 (929)
.+++ +|..+ ..+++|+.|++++|.+
T Consensus 225 ~l~~-l~~~~--~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 225 KLVL-IEKAL--RFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CCCE-ECTTC--CCCTTCCEEECTTCCC
T ss_pred cccc-hhhHh--hcCCCCCEEEccCCCc
Confidence 5552 33333 3334444444444333
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=5e-23 Score=238.37 Aligned_cols=247 Identities=20% Similarity=0.217 Sum_probs=184.7
Q ss_pred CcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCC
Q 045967 215 WDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVG 294 (929)
Q Consensus 215 W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~ 294 (929)
|..|.|...++. .+|..+. +++++|+|++|++.+.. +..+.++++|++|+|++|.+++
T Consensus 56 ~~~v~c~~~~l~----~iP~~~~--~~l~~L~L~~n~i~~~~----------------~~~~~~l~~L~~L~Ls~n~i~~ 113 (452)
T 3zyi_A 56 FSKVVCTRRGLS----EVPQGIP--SNTRYLNLMENNIQMIQ----------------ADTFRHLHHLEVLQLGRNSIRQ 113 (452)
T ss_dssp SCEEECCSSCCS----SCCSCCC--TTCSEEECCSSCCCEEC----------------TTTTTTCTTCCEEECCSSCCCE
T ss_pred CcEEEECCCCcC----ccCCCCC--CCccEEECcCCcCceEC----------------HHHcCCCCCCCEEECCCCccCC
Confidence 567888765432 1232222 57888999988875433 3456677889999999998888
Q ss_pred CCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCCCCcE
Q 045967 295 PVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPSHEML 373 (929)
Q Consensus 295 ~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~L~~ 373 (929)
..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|.+++..+. +.++++|++|++++|...+.
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~------- 186 (452)
T 3zyi_A 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY------- 186 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-------
T ss_pred cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc-------
Confidence 7778888899999999999988877777788889999999999988866554 78888888888887543322
Q ss_pred EEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcC
Q 045967 374 IRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSG 453 (929)
Q Consensus 374 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 453 (929)
..+..+.++++|++|++++|++++......+++|++|+|++|++++..|..|.++++|+.|++++|++++
T Consensus 187 ----------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 187 ----------ISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp ----------ECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred ----------cChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence 2224577888899999999988865333377888888888888888878888888888888888888887
Q ss_pred ccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCC-hhhhcccccceeccCCCcCCC
Q 045967 454 IAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFP-SFLRTQDKLFYLDLSESKIDG 526 (929)
Q Consensus 454 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~N~l~~ 526 (929)
..+ ..|.++++|++|+|++|++. .+| ..+..+++|+.|++++|.+..
T Consensus 257 ~~~-~~~~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 257 IER-NAFDGLASLVELNLAHNNLS-------------------------SLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp ECT-TTTTTCTTCCEEECCSSCCS-------------------------CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ECH-HHhcCCCCCCEEECCCCcCC-------------------------ccChHHhccccCCCEEEccCCCcCC
Confidence 765 67888888888888888543 222 234556677777777776653
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9.2e-23 Score=219.08 Aligned_cols=214 Identities=24% Similarity=0.295 Sum_probs=178.2
Q ss_pred CCCCCCcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCC
Q 045967 210 TNYCSWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGY 289 (929)
Q Consensus 210 ~~~C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~ 289 (929)
.++|.|.|+.|+-. ..++.+++++++++. +|..+. ++|++|++++
T Consensus 2 ~~~C~~~~~~C~c~----------------~~~~~l~~~~~~l~~-----------------ip~~~~--~~l~~L~l~~ 46 (270)
T 2o6q_A 2 EALCKKDGGVCSCN----------------NNKNSVDCSSKKLTA-----------------IPSNIP--ADTKKLDLQS 46 (270)
T ss_dssp CCCBGGGTCSBEEE----------------TTTTEEECTTSCCSS-----------------CCSCCC--TTCSEEECCS
T ss_pred CccCCCCCCCCEeC----------------CCCCEEEccCCCCCc-----------------cCCCCC--CCCCEEECcC
Confidence 47899999999632 146789999998753 333332 5799999999
Q ss_pred CCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCC
Q 045967 290 SQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVP 368 (929)
Q Consensus 290 n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p 368 (929)
|.+++..+..|.++++|++|++++|.++...+..|.++++|++|++++|.+++..+. +.++++|++|++++|.+++
T Consensus 47 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 123 (270)
T 2o6q_A 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS--- 123 (270)
T ss_dssp SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC---
T ss_pred CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe---
Confidence 999987777899999999999999999976666778999999999999999977666 7889999999998888763
Q ss_pred CCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCCCCCCCccccccCCCCcEEec
Q 045967 369 SHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQL 446 (929)
Q Consensus 369 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 446 (929)
..+..+.++++|++|++++|.+++..+.. .+++|++|++++|++++..+..|.++++|++|++
T Consensus 124 ---------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 124 ---------------LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp ---------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ---------------eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 33456788999999999999998766543 7889999999999999777777889999999999
Q ss_pred cCCCCcCccchhhhhccCcccEEEccCCCCC
Q 045967 447 DSNNFSGIAEPYMFAKLIKLKYLYISHNSLS 477 (929)
Q Consensus 447 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 477 (929)
++|++++..+ ..|..+++|+.|++++|++.
T Consensus 189 ~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 189 DNNQLKRVPE-GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred CCCcCCcCCH-HHhccccCCCEEEecCCCee
Confidence 9999987754 67888999999999999643
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=3.7e-25 Score=243.12 Aligned_cols=247 Identities=22% Similarity=0.225 Sum_probs=141.3
Q ss_pred CCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccC-CCCCccccC-------CCCCCCEEEccCCcCCCCCCC-C
Q 045967 277 GNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNF-SSHIPSSLS-------NLVQLTCLDLSGNSFVGEIPD-I 347 (929)
Q Consensus 277 ~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l-~~~~p~~l~-------~L~~L~~L~Ls~N~l~~~~p~-l 347 (929)
+..++|++|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++|++|++++|++++.+|. +
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4445666777777776 466655543 67777777776 334555554 567777777777777766655 3
Q ss_pred --CCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCC-----CCCcEEEcccccCCCCCCCC--CCCCCc
Q 045967 348 --VNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSL-----PLLEYVRLSDNQLSGHIDEF--PSKSLQ 418 (929)
Q Consensus 348 --~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~~~~--~l~~L~ 418 (929)
..+++|++|++++|.+++. |..++.+ ++|++|++++|++++..+.. .+++|+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-------------------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-------------------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-------------------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred HHhcCCCccEEEccCCCCcch-------------------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 6677777777766666532 3333333 56666666666665544333 556666
Q ss_pred EEEecCCCCCCC--Ccccc--ccCCCCcEEeccCCCCcCc--cchhhhhccCcccEEEccCCCCCCCccccccCCCCCcc
Q 045967 419 NIYLSNNRLQGS--IPSSI--FELVNLIDLQLDSNNFSGI--AEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFS 492 (929)
Q Consensus 419 ~L~Ls~N~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~ 492 (929)
+|++++|++.+. .+..+ .++++|++|++++|++++. .+...+.++++|++|++++|++......+....+++|+
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 666666665543 22333 5667777777777776632 12233456677777777777433211111111345555
Q ss_pred eeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccc
Q 045967 493 YLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITK 552 (929)
Q Consensus 493 ~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~ 552 (929)
+|++++|.++.+|..+. ++|++|++++|++++. |. + ..+++|++|++++|.+++
T Consensus 257 ~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~--~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-P--DELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-T--TTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-H--hhCCCCCEEeccCCCCCC
Confidence 55555555555665544 5666666666666654 33 3 455555555555555543
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=9.5e-23 Score=235.16 Aligned_cols=247 Identities=19% Similarity=0.226 Sum_probs=173.9
Q ss_pred CcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCC
Q 045967 215 WDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVG 294 (929)
Q Consensus 215 W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~ 294 (929)
|..|.|....+. .+|..+. ++++.|+|++|++.+.. +..+.++++|++|+|++|.+.+
T Consensus 45 ~~~v~c~~~~l~----~iP~~~~--~~l~~L~L~~n~i~~~~----------------~~~~~~l~~L~~L~Ls~n~i~~ 102 (440)
T 3zyj_A 45 FSKVICVRKNLR----EVPDGIS--TNTRLLNLHENQIQIIK----------------VNSFKHLRHLEILQLSRNHIRT 102 (440)
T ss_dssp SCEEECCSCCCS----SCCSCCC--TTCSEEECCSCCCCEEC----------------TTTTSSCSSCCEEECCSSCCCE
T ss_pred CCEEEeCCCCcC----cCCCCCC--CCCcEEEccCCcCCeeC----------------HHHhhCCCCCCEEECCCCcCCc
Confidence 567888765432 2333332 57888888888775432 2456667888888888888887
Q ss_pred CCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCCCCcE
Q 045967 295 PVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPSHEML 373 (929)
Q Consensus 295 ~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~L~~ 373 (929)
..+..|.++++|++|+|++|++++..+..|.++++|++|++++|.++...+. +.++++|++|++++|...+.
T Consensus 103 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~------- 175 (440)
T 3zyj_A 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY------- 175 (440)
T ss_dssp ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-------
T ss_pred cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-------
Confidence 7777888888888888888888866666788888888888888888766554 77888888888887543322
Q ss_pred EEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcC
Q 045967 374 IRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSG 453 (929)
Q Consensus 374 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 453 (929)
..+..|.++++|++|++++|+++.......+++|++|+|++|++++..|..|.++++|+.|++++|++++
T Consensus 176 ----------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 176 ----------ISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp ----------ECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ----------eCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 2223567778888888888887744332367778888888888877777777778888888888888777
Q ss_pred ccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCC-hhhhcccccceeccCCCcCCC
Q 045967 454 IAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFP-SFLRTQDKLFYLDLSESKIDG 526 (929)
Q Consensus 454 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~N~l~~ 526 (929)
..+ ..|.++++|++|+|++|++. .+| ..+..+++|+.|++++|.+..
T Consensus 246 ~~~-~~~~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 246 IER-NAFDNLQSLVEINLAHNNLT-------------------------LLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ECT-TSSTTCTTCCEEECTTSCCC-------------------------CCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ECh-hhhcCCCCCCEEECCCCCCC-------------------------ccChhHhccccCCCEEEcCCCCccC
Confidence 655 66777777777777777443 222 234556677777777776653
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1e-23 Score=245.94 Aligned_cols=235 Identities=21% Similarity=0.185 Sum_probs=146.9
Q ss_pred ccccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc-CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhc
Q 045967 511 QDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICD 589 (929)
Q Consensus 511 ~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~ 589 (929)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+++|++|++++|.++ .++ .
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~---------~l~----~ 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADL--APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ---------ELL----V 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGG--TTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEE---------EEE----E
T ss_pred CCCccEEEeeCCcCCCCCHHHH--hCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCC---------CCC----C
Confidence 4488889999988888777777 777888888888888776655 45567777777777665 122 2
Q ss_pred cCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCccccc-CCCCCc
Q 045967 590 IIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLG-NLPELR 668 (929)
Q Consensus 590 l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~ 668 (929)
.++|++|++++|.+++..+..+ +.+ ..|++++|.+++..|..+.++++|++|++++|.+++.+|..+. .+++|+
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~~l---~~L--~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCSRG---QGK--KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp CTTCCEEECCSSCCCCEEECCC---SSC--EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCCcCEEECcCCcCCCCCcccc---CCC--CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 2567777777777665443322 221 3555555555555555555555556666666655555554443 455555
Q ss_pred eeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccE
Q 045967 669 VLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTT 748 (929)
Q Consensus 669 ~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 748 (929)
.|+|++|.+++ . | .. ..+++|+.
T Consensus 173 ~L~Ls~N~l~~--------------~-~------------------------~~------------------~~l~~L~~ 195 (487)
T 3oja_A 173 HLNLQYNFIYD--------------V-K------------------------GQ------------------VVFAKLKT 195 (487)
T ss_dssp EEECTTSCCCE--------------E-E------------------------CC------------------CCCTTCCE
T ss_pred EEecCCCcccc--------------c-c------------------------cc------------------ccCCCCCE
Confidence 55444444331 1 1 00 01456777
Q ss_pred eeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCC-CCCchhhccCCCCCEEECc
Q 045967 749 IDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLA-GKIPKQLASLTSLSVLNIS 824 (929)
Q Consensus 749 LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls-~~ip~~l~~L~~L~~L~Ls 824 (929)
|+|++|.+++..| .++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 196 L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 196 LDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 7777777775433 36777777777777777774 5666777777777777777776 5566666666666666665
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=5e-26 Score=273.08 Aligned_cols=416 Identities=15% Similarity=0.111 Sum_probs=231.6
Q ss_pred hhhhcCCCCceEEEcCCCCCCC---CCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccC-CCCCCCE
Q 045967 233 QALVQNMTKLQVLSLASLEMST---VVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLG-NLTQLTL 308 (929)
Q Consensus 233 ~~~l~~l~~L~~L~Ls~~~l~~---~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~-~l~~L~~ 308 (929)
...+.++++|++|+++++.... ..|..++.. ....++.....+++|++|+|++|.+++..+..+. .+++|++
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~----~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 134 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGY----VYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKV 134 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCB----CHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCE
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccch----hhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcE
Confidence 3456778899999999875321 111111110 0011222345688999999999998877666665 6899999
Q ss_pred EeccCc-cCCCC-CccccCCCCCCCEEEccCCcCCCCCCC-----CCCCCCCCEEeCCCCc--CCCC-C------CCCCc
Q 045967 309 LHLMHN-NFSSH-IPSSLSNLVQLTCLDLSGNSFVGEIPD-----IVNLTQVSFFDLSNNQ--LAGP-V------PSHEM 372 (929)
Q Consensus 309 L~Ls~n-~l~~~-~p~~l~~L~~L~~L~Ls~N~l~~~~p~-----l~~L~~L~~L~Ls~n~--l~~~-~------p~~L~ 372 (929)
|+|++| .++.. ++..+.++++|++|++++|.+++..+. ...+++|++|++++|. ++.. + ...|+
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence 999999 44432 444455899999999999997764433 3377899999999886 2100 0 01244
Q ss_pred EEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEE-eccCCCC
Q 045967 373 LIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDL-QLDSNNF 451 (929)
Q Consensus 373 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L-~Ls~N~l 451 (929)
.|++++|...+.+|..+.++++|++|+++.+... +..+.+. .++..+.++++|+.| .+.+...
T Consensus 215 ~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~---------------~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE---------------VRPDVYS-GLSVALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC---------------CCHHHHH-HHHHHHHTCTTCCEEECCBTCCG
T ss_pred EEecCCCCcHHHHHHHHhcCCcceEcccccccCc---------------cchhhHH-HHHHHHhcCCCcccccCCcccch
Confidence 4444444211123444444444444443332110 1111111 122244455555555 2322221
Q ss_pred cCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCC--CCChhhhcccccceeccCC--------
Q 045967 452 SGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNIS--AFPSFLRTQDKLFYLDLSE-------- 521 (929)
Q Consensus 452 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~--~lp~~l~~~~~L~~L~Ls~-------- 521 (929)
.. ++ ..+..+++|++|++++|.+...+.......+++|+.|++.+| ++ .++.....+++|++|++++
T Consensus 279 ~~-l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~ 355 (594)
T 2p1m_B 279 AY-LP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355 (594)
T ss_dssp GG-GG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred hh-HH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccccc
Confidence 11 11 233345555555555553221110000114455555555555 22 2223334566777776632
Q ss_pred -CcCCCCCchhhhccCCCCccEEeccccccccccc----CCCCCccEEEcC--C----CCCCCCCCCCCCcccchhhhcc
Q 045967 522 -SKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ----ISWKNLGYLDLR--S----NLLQGPLPVPPSREIIHSICDI 590 (929)
Q Consensus 522 -N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~----~~~~~L~~L~Ls--~----N~l~~~~~~~~~~~~p~~l~~l 590 (929)
+.+++.....+. ..+++|+.|.++.|.+++... ..+++|+.|+++ + +.+++... ...++..+..+
T Consensus 356 ~~~l~~~~l~~l~-~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~---~~~~~~l~~~~ 431 (594)
T 2p1m_B 356 NVALTEQGLVSVS-MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL---DIGFGAIVEHC 431 (594)
T ss_dssp SSCCCHHHHHHHH-HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT---HHHHHHHHHHC
T ss_pred CCCCCHHHHHHHH-HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch---hhHHHHHHhhC
Confidence 333332222221 235777777777777765443 246777888777 3 33331100 02233446677
Q ss_pred CCCCEEeCCCCcCcCCCcccccc-CcccccceeeccCcccCCCCcccc-cCCCCCcEEEccCCcCCCCCcc-cccCCCCC
Q 045967 591 IALDVLDLSNNRLSGTIPECIGN-FSPWLSVSLNLNNNELEGANPQSL-VNCTKLEVLDIGNNKINDVFPY-WLGNLPEL 667 (929)
Q Consensus 591 ~~L~~L~Ls~N~l~~~ip~~l~~-l~~ll~~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L 667 (929)
++|+.|++++ .+++..+..++. ++.+ +.|++++|.+++.....+ .++++|++|++++|.+++.... ....+++|
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L--~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTYAKKM--EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHHCTTC--CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred CCccEEeecC-cccHHHHHHHHHhchhc--cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 8888888876 666555555544 4442 578888888766544444 6688999999999998655433 44557888
Q ss_pred ceeeccccccc
Q 045967 668 RVLVLRSNKLR 678 (929)
Q Consensus 668 ~~L~Ls~N~l~ 678 (929)
+.|++++|+++
T Consensus 509 ~~L~l~~~~~~ 519 (594)
T 2p1m_B 509 RSLWMSSCSVS 519 (594)
T ss_dssp SEEEEESSCCB
T ss_pred CEEeeeCCCCC
Confidence 88888888764
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.3e-23 Score=241.62 Aligned_cols=231 Identities=19% Similarity=0.187 Sum_probs=153.1
Q ss_pred CCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeC
Q 045967 279 LKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDL 358 (929)
Q Consensus 279 l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~L 358 (929)
+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| ++.+++|++|+|++|.+++..+ .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3478999999998888777888889999999999998887655 8888899999999998876443 378888888
Q ss_pred CCCcCCCCCCCC---CcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC---CCCCCcEEEecCCCCCCCCc
Q 045967 359 SNNQLAGPVPSH---EMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF---PSKSLQNIYLSNNRLQGSIP 432 (929)
Q Consensus 359 s~n~l~~~~p~~---L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~p 432 (929)
++|.+++..+.. |+.|++++|.+++..|..++++++|++|+|++|.+++.++.. .+++|++|+|++|.+++. |
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 185 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence 888887644322 666666666666666666666677777777777666644433 356666666666666644 2
Q ss_pred cccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhccc
Q 045967 433 SSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQD 512 (929)
Q Consensus 433 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~ 512 (929)
.+..+++|+.|+|++|.+++..+ .+..+++|+.|++++|.+ +.+|..+..++
T Consensus 186 -~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l-------------------------~~lp~~l~~l~ 237 (487)
T 3oja_A 186 -GQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKL-------------------------VLIEKALRFSQ 237 (487)
T ss_dssp -CCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCC-------------------------CEECTTCCCCT
T ss_pred -ccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcC-------------------------cccchhhccCC
Confidence 23346666666666666666533 366666666666666643 33444455555
Q ss_pred ccceeccCCCcCC-CCCchhhhccCCCCccEEecc
Q 045967 513 KLFYLDLSESKID-GQIPRWISKIGKDSLSYLNLS 546 (929)
Q Consensus 513 ~L~~L~Ls~N~l~-~~~p~~l~~~~~~~L~~L~Ls 546 (929)
+|+.|++++|.+. +.+|.++ ..++.|+.++++
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~--~~l~~L~~l~~~ 270 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQ 270 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHH--TTCHHHHHHHHH
T ss_pred CCCEEEcCCCCCcCcchHHHH--HhCCCCcEEecc
Confidence 5555555555555 3344444 444455555443
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=2.5e-24 Score=258.26 Aligned_cols=401 Identities=13% Similarity=0.076 Sum_probs=210.3
Q ss_pred ccCCCCCcEEEcccccCCCCC---CC--------------CCCCCCcEEEecCCCCCCCCccccc-cCCCCcEEeccCC-
Q 045967 389 LFSLPLLEYVRLSDNQLSGHI---DE--------------FPSKSLQNIYLSNNRLQGSIPSSIF-ELVNLIDLQLDSN- 449 (929)
Q Consensus 389 l~~l~~L~~L~Ls~N~l~~~~---~~--------------~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N- 449 (929)
+..+++|++|+++++...... +. ..+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 455677777777776422111 10 0356788888888877766555554 5778888888877
Q ss_pred CCcCccchhhhhccCcccEEEccCCCCCCCcc--ccccC-CCCCcceeeccccC--CC--CCChhhhcccccceeccCCC
Q 045967 450 NFSGIAEPYMFAKLIKLKYLYISHNSLSLGTT--FKIDI-PFPKFSYLSLFACN--IS--AFPSFLRTQDKLFYLDLSES 522 (929)
Q Consensus 450 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~-~~~~L~~L~L~~n~--l~--~lp~~l~~~~~L~~L~Ls~N 522 (929)
.++....+..+.++++|++|++++|.+...+. +.... .+++|+.|++++|. ++ .++.....+++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 44432222444577888888888875432221 11111 46677777777775 21 22233455677888888777
Q ss_pred cCCCCCchhhhccCCCCccEEecccc-------ccccccc--CCCCCccEE-EcCCCCCCCCCCCCCCcccchhhhccCC
Q 045967 523 KIDGQIPRWISKIGKDSLSYLNLSHN-------FITKMKQ--ISWKNLGYL-DLRSNLLQGPLPVPPSREIIHSICDIIA 592 (929)
Q Consensus 523 ~l~~~~p~~l~~~~~~~L~~L~Ls~N-------~l~~~~~--~~~~~L~~L-~Ls~N~l~~~~~~~~~~~~p~~l~~l~~ 592 (929)
...+.++..+ ..+++|++|+++.+ .+.++.. ..+++|+.+ .+.+... +.++..+..+++
T Consensus 222 ~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~---------~~l~~~~~~~~~ 290 (594)
T 2p1m_B 222 VPLEKLATLL--QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP---------AYLPAVYSVCSR 290 (594)
T ss_dssp SCHHHHHHHH--HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG---------GGGGGGHHHHTT
T ss_pred CcHHHHHHHH--hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch---------hhHHHHHHhhCC
Confidence 3222255555 56677777775443 2233222 345566666 2222211 344445556677
Q ss_pred CCEEeCCCCcCcCCCccc-cccCcccccceeeccCcccCCC-CcccccCCCCCcEEEccC---------CcCCCCCcccc
Q 045967 593 LDVLDLSNNRLSGTIPEC-IGNFSPWLSVSLNLNNNELEGA-NPQSLVNCTKLEVLDIGN---------NKINDVFPYWL 661 (929)
Q Consensus 593 L~~L~Ls~N~l~~~ip~~-l~~l~~ll~~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~---------N~l~~~~p~~~ 661 (929)
|++|++++|.+++..... +..++++ +.|++++| +... ++.....+++|++|++++ +.+++.....+
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L--~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKL--QRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTC--CEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCc--CEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 777777777655332221 2233332 35555555 2211 111122355666666622 33333222222
Q ss_pred c-CCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccC--C----CcccccCccccccceEEEecC
Q 045967 662 G-NLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGAD--E----GKLRYLGEEYYQDSVVVTLKG 734 (929)
Q Consensus 662 ~-~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls--~----n~l~~l~~~~~~~~~~~~~~~ 734 (929)
. .+++|+.|.+..|.+ ++.....+...+++|+.|+++ + +.++..+.. .
T Consensus 368 ~~~~~~L~~L~~~~~~l--------------~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~-----------~ 422 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQM--------------TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD-----------I 422 (594)
T ss_dssp HHHCTTCCEEEEEESCC--------------CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH-----------H
T ss_pred HHhchhHHHHHHhcCCc--------------CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh-----------h
Confidence 1 255555554444443 333333333445666666665 2 122111000 0
Q ss_pred chhhHhhhcccccEeeccccccCcccchhhcc-ccccceeeccCccCCCCCCccc-cCcCCCCEeeCCCCcCCCCCch-h
Q 045967 735 TEIELQKILTVFTTIDFSSNGFDGEISQVIGK-LHSLRLLNLTHNHFTGKIPSSL-GNLAKLESLDLSSNNLAGKIPK-Q 811 (929)
Q Consensus 735 ~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-L~~L~~L~Ls~N~l~~~ip~~l-~~L~~L~~LdLs~N~ls~~ip~-~ 811 (929)
........+++|+.|++++ .+++..+..++. +++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. .
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~ 501 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence 0011123356677777765 566555555554 6677777777777665444444 4567777777777777544333 2
Q ss_pred hccCCCCCEEECccCcCc
Q 045967 812 LASLTSLSVLNISHNRLD 829 (929)
Q Consensus 812 l~~L~~L~~L~Ls~N~l~ 829 (929)
...+++|+.|++++|+++
T Consensus 502 ~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp GGGGGGSSEEEEESSCCB
T ss_pred HHhCCCCCEEeeeCCCCC
Confidence 334667777777777663
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.4e-21 Score=210.63 Aligned_cols=212 Identities=24% Similarity=0.245 Sum_probs=153.2
Q ss_pred CCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCccccc
Q 045967 559 KNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLV 638 (929)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~ 638 (929)
++|++|++++|.++ +..+..+.++++|++|++++|++++..+..+..++.+ +.|++++|.+++..+..+.
T Consensus 28 ~~l~~L~ls~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFNPLR--------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL--STLILTGNPIQSLALGAFS 97 (276)
T ss_dssp TTCCEEECTTCCCC--------EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTC--CEEECTTCCCCEECTTTTT
T ss_pred CCccEEECCCCccc--------ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCC--CEEECCCCccCccChhhhc
Confidence 34555666666654 3233355666677777777777665555556655553 4667777777666666777
Q ss_pred CCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccc
Q 045967 639 NCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRY 718 (929)
Q Consensus 639 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~ 718 (929)
++++|++|++++|++++..+..+..+++|++|++++|++++ ..+|.. +
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~l~~~-~------------------ 145 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-------------FKLPEY-F------------------ 145 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-------------CCCCGG-G------------------
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce-------------ecCchh-h------------------
Confidence 77888888888888877766677777777777666665541 012321 1
Q ss_pred cCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccc----eeeccCccCCCCCCccccCcCCC
Q 045967 719 LGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLR----LLNLTHNHFTGKIPSSLGNLAKL 794 (929)
Q Consensus 719 l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~----~L~Ls~N~l~~~ip~~l~~L~~L 794 (929)
..+++|+.|++++|++++..+..+..+.+|+ +|++++|.+++..+..+. ..+|
T Consensus 146 ----------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L 202 (276)
T 2z62_A 146 ----------------------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRL 202 (276)
T ss_dssp ----------------------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCE
T ss_pred ----------------------ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcc
Confidence 1156788899999999888788888877777 899999999976666554 4589
Q ss_pred CEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCCC
Q 045967 795 ESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQG 835 (929)
Q Consensus 795 ~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~~ 835 (929)
+.|+|++|++++..+..+..+++|+.|++++|++.|.+|.-
T Consensus 203 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp EEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 99999999999877777899999999999999999988854
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=5.3e-21 Score=205.29 Aligned_cols=183 Identities=26% Similarity=0.363 Sum_probs=125.0
Q ss_pred eeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHH
Q 045967 621 SLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFF 700 (929)
Q Consensus 621 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~ 700 (929)
.|++++|.+.+..+..|.++++|++|++++|+++...+..|..+++|++|++++|+++ .+|...|
T Consensus 41 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~~ 105 (270)
T 2o6q_A 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ---------------ALPIGVF 105 (270)
T ss_dssp EEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC---------------CCCTTTT
T ss_pred EEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC---------------cCCHhHc
Confidence 4444455444444444555555555555555555444444444555554444444333 2333334
Q ss_pred hhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccC
Q 045967 701 EKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHF 780 (929)
Q Consensus 701 ~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l 780 (929)
..+++|+.|++++|.+..++...+. .+++|+.|+|++|++++..+..|+.+++|++|+|++|++
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~----------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFD----------------SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTT----------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccccCCCEEECCCCccCeeCHHHhC----------------cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 4444444444444444333322221 267899999999999987777899999999999999999
Q ss_pred CCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCC
Q 045967 781 TGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQ 834 (929)
Q Consensus 781 ~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~ 834 (929)
++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 988888899999999999999999987777899999999999999999887763
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=3.2e-20 Score=199.89 Aligned_cols=203 Identities=19% Similarity=0.160 Sum_probs=111.6
Q ss_pred CCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCC
Q 045967 281 LLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSN 360 (929)
Q Consensus 281 ~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~ 360 (929)
+|++|++++|.+++..+..|.++++|++|++++|++++..+..+.++++|++|++++|.+++..+.
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------- 94 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-------------- 94 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh--------------
Confidence 455555555555554444555555555555555555544444555555555555555555544333
Q ss_pred CcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCCCCC-CCcccccc
Q 045967 361 NQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQG-SIPSSIFE 437 (929)
Q Consensus 361 n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~-~~p~~l~~ 437 (929)
.+.++++|++|++++|.+++..+.. .+++|++|++++|.+++ .+|..+.+
T Consensus 95 ---------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~ 147 (276)
T 2z62_A 95 ---------------------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147 (276)
T ss_dssp ---------------------------TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred ---------------------------hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc
Confidence 3444444444444444444333311 44555555555555554 24677777
Q ss_pred CCCCcEEeccCCCCcCccchhhhhccCccc----EEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChh-hhccc
Q 045967 438 LVNLIDLQLDSNNFSGIAEPYMFAKLIKLK----YLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSF-LRTQD 512 (929)
Q Consensus 438 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~ 512 (929)
+++|++|++++|++++..+ ..+..+++|+ +|++++|++. +..+......+|+.|++++|.++.+|.. +..++
T Consensus 148 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~l~l~L~ls~n~l~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp CTTCCEEECCSSCCCEECG-GGGHHHHTCTTCCEEEECCSSCCC--EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred CCCCCEEECCCCCCCcCCH-HHhhhhhhccccceeeecCCCccc--ccCccccCCCcccEEECCCCceeecCHhHhcccc
Confidence 7777777777777776644 5566666665 6777777432 2222222333555555555555555442 45566
Q ss_pred ccceeccCCCcCCCC
Q 045967 513 KLFYLDLSESKIDGQ 527 (929)
Q Consensus 513 ~L~~L~Ls~N~l~~~ 527 (929)
+|++|++++|.+.+.
T Consensus 225 ~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 225 SLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCCEEECCSSCBCCC
T ss_pred cccEEEccCCccccc
Confidence 666666666666643
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.9e-21 Score=209.12 Aligned_cols=183 Identities=23% Similarity=0.280 Sum_probs=130.8
Q ss_pred hhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCC
Q 045967 587 ICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPE 666 (929)
Q Consensus 587 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 666 (929)
+..+++|++|++++|++++ + ..+..++.+ ++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++
T Consensus 59 l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L--~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD-I-SALKELTNL--TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC-C-GGGTTCTTC--CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccCCCCcEEECCCCCCCC-c-hhhcCCCCC--CEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence 5556666666666666654 2 244455442 35666666666666666777777888888888887777766777777
Q ss_pred CceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccc
Q 045967 667 LRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVF 746 (929)
Q Consensus 667 L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L 746 (929)
|++|++++|+++ .+|...+. .+++|
T Consensus 135 L~~L~L~~n~l~---------------~~~~~~~~----------------------------------------~l~~L 159 (272)
T 3rfs_A 135 LTYLNLAHNQLQ---------------SLPKGVFD----------------------------------------KLTNL 159 (272)
T ss_dssp CCEEECCSSCCC---------------CCCTTTTT----------------------------------------TCTTC
T ss_pred CCEEECCCCccC---------------ccCHHHhc----------------------------------------cCccC
Confidence 777666666554 22322111 15677
Q ss_pred cEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccC
Q 045967 747 TTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHN 826 (929)
Q Consensus 747 ~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N 826 (929)
+.|++++|++++..+..++.+++|++|+|++|++++..|..++.+++|+.|+|++|.+.+.. +.|+.|+++.|
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n 232 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWIN 232 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHH
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHH
Confidence 88888888888777777888889999999999998888877888899999999999887653 46788888889
Q ss_pred cCccCCCCC
Q 045967 827 RLDGPIPQG 835 (929)
Q Consensus 827 ~l~g~iP~~ 835 (929)
.++|.+|..
T Consensus 233 ~~~g~ip~~ 241 (272)
T 3rfs_A 233 KHSGVVRNS 241 (272)
T ss_dssp HTGGGBBCT
T ss_pred hCCCcccCc
Confidence 999988864
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.3e-20 Score=202.31 Aligned_cols=176 Identities=24% Similarity=0.275 Sum_probs=110.3
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCE
Q 045967 276 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSF 355 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~ 355 (929)
+++++++++++++++.++. +|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..+ .+.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCE
Confidence 4556777777777777664 555554 567777777777776666777777777777777777765433 366667777
Q ss_pred EeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCCCCCCCcc
Q 045967 356 FDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSIPS 433 (929)
Q Consensus 356 L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~ 433 (929)
|++++|.++ .+|..+.++++|++|++++|++++..+.. .+++|++|++++|++++..+.
T Consensus 82 L~Ls~N~l~-------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 142 (290)
T 1p9a_G 82 LDLSHNQLQ-------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142 (290)
T ss_dssp EECCSSCCS-------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred EECCCCcCC-------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh
Confidence 777766665 34455566666666666666666544332 455666666666666655455
Q ss_pred ccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCC
Q 045967 434 SIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNS 475 (929)
Q Consensus 434 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 475 (929)
.|..+++|+.|++++|++++..+ ..|..+++|++|++++|+
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENS 183 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred hcccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCc
Confidence 55566666666666666665433 445555556666555553
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.8e-20 Score=198.83 Aligned_cols=189 Identities=24% Similarity=0.232 Sum_probs=139.0
Q ss_pred CCCCCcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCC
Q 045967 211 NYCSWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYS 290 (929)
Q Consensus 211 ~~C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n 290 (929)
+||.|.|.+|.. ..+.++++++.++ .+|..+. ++|++|+|++|
T Consensus 3 ~Cp~~~gC~C~~------------------~~~~l~~~~~~l~-----------------~~p~~~~--~~l~~L~L~~n 45 (251)
T 3m19_A 3 TCETVTGCTCNE------------------GKKEVDCQGKSLD-----------------SVPSGIP--ADTEKLDLQST 45 (251)
T ss_dssp -CHHHHSSEEEG------------------GGTEEECTTCCCS-----------------SCCSCCC--TTCCEEECTTS
T ss_pred cCCCCCceEcCC------------------CCeEEecCCCCcc-----------------ccCCCCC--CCCCEEEccCC
Confidence 588999999953 3567899988764 2343333 57899999999
Q ss_pred CCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCC
Q 045967 291 QFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPS 369 (929)
Q Consensus 291 ~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~ 369 (929)
.+.+..+..|.++++|++|+|++|.+++..+..+.++++|++|++++|++++..+. +.++++|++|++++|.+++
T Consensus 46 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---- 121 (251)
T 3m19_A 46 GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS---- 121 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----
T ss_pred CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC----
Confidence 99988888899999999999999999988888889999999999999998876665 6778888888888777762
Q ss_pred CCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCCCCCCCccccccCCCCcEEecc
Q 045967 370 HEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLD 447 (929)
Q Consensus 370 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 447 (929)
..+..+.++++|++|+|++|++++..+.. .+++|++|+|++|++++..+..+..+++|+.|+++
T Consensus 122 --------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 122 --------------LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp --------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred --------------cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 22234567777777777777777554432 55666666666666665555556666666666666
Q ss_pred CCCCcCc
Q 045967 448 SNNFSGI 454 (929)
Q Consensus 448 ~N~l~~~ 454 (929)
+|.+.+.
T Consensus 188 ~N~~~c~ 194 (251)
T 3m19_A 188 GNQFDCS 194 (251)
T ss_dssp SCCBCTT
T ss_pred CCceeCC
Confidence 6666544
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=4e-21 Score=206.49 Aligned_cols=227 Identities=20% Similarity=0.262 Sum_probs=175.2
Q ss_pred cccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc-CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhcc
Q 045967 512 DKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDI 590 (929)
Q Consensus 512 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l 590 (929)
.++..+++..+.+.+.... ..+++|+.|++++|.++.... ..+++|++|++++|.++ + + ..+..+
T Consensus 19 ~~l~~l~l~~~~~~~~~~~----~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~--------~-~-~~l~~l 84 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH--------D-I-SALKEL 84 (272)
T ss_dssp HHHHHHHHTCSCTTSEECH----HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC--------C-C-GGGTTC
T ss_pred HHHHHHHhcCccccccccc----ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCC--------C-c-hhhcCC
Confidence 3444555555555443221 345667777777777666554 45677888888888876 2 2 367788
Q ss_pred CCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCcee
Q 045967 591 IALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVL 670 (929)
Q Consensus 591 ~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 670 (929)
++|++|++++|++++..+..+..++.+ +.|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|+.|
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNL--KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTC--CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCccChhHhcCCcCC--CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 889999999999887777777777764 589999999998888889999999999999999999888888999999988
Q ss_pred eccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEee
Q 045967 671 VLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTID 750 (929)
Q Consensus 671 ~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 750 (929)
++++|+++ .++...+. .+++|+.|+
T Consensus 163 ~l~~n~l~---------------~~~~~~~~----------------------------------------~l~~L~~L~ 187 (272)
T 3rfs_A 163 DLSYNQLQ---------------SLPEGVFD----------------------------------------KLTQLKDLR 187 (272)
T ss_dssp ECCSSCCC---------------CCCTTTTT----------------------------------------TCTTCCEEE
T ss_pred ECCCCCcC---------------ccCHHHhc----------------------------------------CCccCCEEE
Confidence 77777664 23322211 156789999
Q ss_pred ccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCC
Q 045967 751 FSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLT 816 (929)
Q Consensus 751 Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~ 816 (929)
+++|++++..+..++.+++|++|+|++|.+.+. +++|+.|+++.|.++|.+|..++.+.
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 999999998888899999999999999998855 45789999999999999999887664
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=8.7e-21 Score=208.02 Aligned_cols=84 Identities=27% Similarity=0.356 Sum_probs=72.8
Q ss_pred hcccccEeeccccccCcccchhhccc---cccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCC
Q 045967 742 ILTVFTTIDFSSNGFDGEISQVIGKL---HSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSL 818 (929)
Q Consensus 742 ~l~~L~~LdLs~N~l~~~ip~~l~~L---~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L 818 (929)
.+++|+.|||++|++++.+|..++.+ ++|++|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 36789999999999998888888777 69999999999999 7787774 8999999999999974 43 6788999
Q ss_pred CEEECccCcCcc
Q 045967 819 SVLNISHNRLDG 830 (929)
Q Consensus 819 ~~L~Ls~N~l~g 830 (929)
+.|++++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999999974
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=2.3e-20 Score=198.05 Aligned_cols=213 Identities=21% Similarity=0.260 Sum_probs=162.0
Q ss_pred CCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCcee
Q 045967 591 IALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVL 670 (929)
Q Consensus 591 ~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 670 (929)
...++++++++.++ .+|..+.. . + +.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~~--~-l-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIPA--D-T-EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCCT--T-C-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCcc-ccCCCCCC--C-C-CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 45677888888887 66665542 2 2 488899999988888889999999999999999999888888889999888
Q ss_pred eccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEee
Q 045967 671 VLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTID 750 (929)
Q Consensus 671 ~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 750 (929)
++++|+++ .+|...|. .+++|+.|+
T Consensus 89 ~L~~n~l~---------------~~~~~~~~----------------------------------------~l~~L~~L~ 113 (251)
T 3m19_A 89 GLANNQLA---------------SLPLGVFD----------------------------------------HLTQLDKLY 113 (251)
T ss_dssp ECTTSCCC---------------CCCTTTTT----------------------------------------TCTTCCEEE
T ss_pred ECCCCccc---------------ccChhHhc----------------------------------------ccCCCCEEE
Confidence 77777664 33332221 156788999
Q ss_pred ccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCcc
Q 045967 751 FSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDG 830 (929)
Q Consensus 751 Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g 830 (929)
|++|++++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|+.|++++|++++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 99999998778888999999999999999998877789999999999999999998888899999999999999999998
Q ss_pred CCCCCCCCCcc------ccccccCCcCCCCCCCCCCCCCC
Q 045967 831 PIPQGPQFNTI------QEDSYIGNLGLCGFSLTKKYGND 864 (929)
Q Consensus 831 ~iP~~~~~~~~------~~~~~~gn~~Lcg~~l~~~c~~~ 864 (929)
..+....+..+ ......|+ .+|+.+....|...
T Consensus 194 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 194 SRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp TSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 75432222111 11112233 36666666677553
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=1.8e-19 Score=195.24 Aligned_cols=201 Identities=23% Similarity=0.170 Sum_probs=166.2
Q ss_pred hcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCcc
Q 045967 236 VQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNN 315 (929)
Q Consensus 236 l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~ 315 (929)
+.++++++.+++++++++. +|..+. +++++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-----------------ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~ 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-----------------LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-----------------CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC
T ss_pred ccccCCccEEECCCCCCCc-----------------CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc
Confidence 4567789999999998743 333333 689999999999998888899999999999999999
Q ss_pred CCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCC
Q 045967 316 FSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLL 395 (929)
Q Consensus 316 l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L 395 (929)
+++..+ .+.+++|++|++++|+++.....+..+++|++|++++|++++ ..+..|.++++|
T Consensus 67 l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~------------------l~~~~~~~l~~L 126 (290)
T 1p9a_G 67 LTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS------------------LPLGALRGLGEL 126 (290)
T ss_dssp CCEEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC------------------CCSSTTTTCTTC
T ss_pred cCcccC--CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcc------------------cCHHHHcCCCCC
Confidence 986533 388999999999999999655458889999999999988873 334668889999
Q ss_pred cEEEcccccCCCCCCCC--CCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccC
Q 045967 396 EYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISH 473 (929)
Q Consensus 396 ~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 473 (929)
++|+|++|++++..+.. .+++|+.|+|++|++++..+..|..+++|+.|++++|+++.+ | ..+....+|+.+++++
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p-~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-P-KGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-C-TTTTTTCCCSEEECCS
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-C-hhhcccccCCeEEeCC
Confidence 99999999998766554 678999999999999866666678899999999999999866 3 5667778999999999
Q ss_pred CCCC
Q 045967 474 NSLS 477 (929)
Q Consensus 474 N~l~ 477 (929)
|++.
T Consensus 205 Np~~ 208 (290)
T 1p9a_G 205 NPWL 208 (290)
T ss_dssp CCBC
T ss_pred CCcc
Confidence 9653
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=5e-21 Score=214.76 Aligned_cols=252 Identities=17% Similarity=0.196 Sum_probs=144.9
Q ss_pred eccCCCcCCCCCchhhhccCCCCccEEeccccccccccc-------CCCC-CccEEEcCCCCCCCCCCCCCCcccchhhh
Q 045967 517 LDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ-------ISWK-NLGYLDLRSNLLQGPLPVPPSREIIHSIC 588 (929)
Q Consensus 517 L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~-------~~~~-~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~ 588 (929)
++++.|.+++.+|..+ ...++|++|++++|.+++... ..++ +|++|++++|.++ +..+..+.
T Consensus 3 ~~ls~n~~~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~--------~~~~~~l~ 72 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFT--SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--------FKNSDELV 72 (362)
T ss_dssp EECCCCTTCCHHHHHH--TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG--------GSCHHHHH
T ss_pred cccccccchHHHHHHH--hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC--------HHHHHHHH
Confidence 4566666666666554 344456666666666665543 2234 6777777777776 44445555
Q ss_pred cc-----CCCCEEeCCCCcCcCCCccccccC-----cccccceeeccCcccCCCCcccc----cC-CCCCcEEEccCCcC
Q 045967 589 DI-----IALDVLDLSNNRLSGTIPECIGNF-----SPWLSVSLNLNNNELEGANPQSL----VN-CTKLEVLDIGNNKI 653 (929)
Q Consensus 589 ~l-----~~L~~L~Ls~N~l~~~ip~~l~~l-----~~ll~~~L~Ls~N~l~~~~p~~~----~~-l~~L~~L~Ls~N~l 653 (929)
.+ ++|++|++++|++++..+..+... +.+ +.|++++|.+++..+..+ .. .++|++|++++|.+
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L--~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI--TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC--CEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCc--cEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 54 778888888888776655543332 221 355555555555444332 22 24555555555555
Q ss_pred CCCCcc----cccCCC-CCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccce
Q 045967 654 NDVFPY----WLGNLP-ELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSV 728 (929)
Q Consensus 654 ~~~~p~----~~~~l~-~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~ 728 (929)
++.... .+..++ +|++|+|+ +|.+++..+..+...+
T Consensus 151 ~~~~~~~l~~~l~~~~~~L~~L~Ls--------------~n~l~~~~~~~l~~~l------------------------- 191 (362)
T 3goz_A 151 GIKSSDELIQILAAIPANVNSLNLR--------------GNNLASKNCAELAKFL------------------------- 191 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECT--------------TSCGGGSCHHHHHHHH-------------------------
T ss_pred CHHHHHHHHHHHhcCCccccEeeec--------------CCCCchhhHHHHHHHH-------------------------
Confidence 543222 222332 44444433 3333333332221111
Q ss_pred EEEecCchhhHhhhc-ccccEeeccccccCcc----cchhhccc-cccceeeccCccCCCCCC----ccccCcCCCCEee
Q 045967 729 VVTLKGTEIELQKIL-TVFTTIDFSSNGFDGE----ISQVIGKL-HSLRLLNLTHNHFTGKIP----SSLGNLAKLESLD 798 (929)
Q Consensus 729 ~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~----ip~~l~~L-~~L~~L~Ls~N~l~~~ip----~~l~~L~~L~~Ld 798 (929)
... ++|+.|||++|.+++. ++..+..+ ++|++|+|++|.+++..+ ..+..+++|++|+
T Consensus 192 ------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 192 ------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp ------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred ------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 112 4677888888887753 45555553 488888888888876544 3346678888888
Q ss_pred CCCCcCCCCCch-------hhccCCCCCEEECccCcCccC
Q 045967 799 LSSNNLAGKIPK-------QLASLTSLSVLNISHNRLDGP 831 (929)
Q Consensus 799 Ls~N~ls~~ip~-------~l~~L~~L~~L~Ls~N~l~g~ 831 (929)
|++|.+.+..+. .+..+++|+.||+++|++.+.
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 888886544333 456677788888888888765
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.1e-21 Score=217.47 Aligned_cols=264 Identities=17% Similarity=0.187 Sum_probs=173.6
Q ss_pred CCCCCCcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCC--CCCcEEEC
Q 045967 210 TNYCSWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNL--KLLGRLML 287 (929)
Q Consensus 210 ~~~C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l--~~L~~L~L 287 (929)
..|++|.++.|+.. .++.++++++.+. +..+..+ +++++|++
T Consensus 34 ~vc~~W~~~~~~~~-----------------~~~~l~l~~~~~~-------------------~~~~~~~~~~~l~~L~l 77 (336)
T 2ast_B 34 GVCKRWYRLASDES-----------------LWQTLDLTGKNLH-------------------PDVTGRLLSQGVIAFRC 77 (336)
T ss_dssp SSCHHHHHHHTCST-----------------TSSEEECTTCBCC-------------------HHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHhcCch-----------------hheeeccccccCC-------------------HHHHHhhhhccceEEEc
Confidence 45668999988743 4678899888663 1223444 78899999
Q ss_pred CCCCCCCCCccccCCCCCCCEEeccCccCCCC-CccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCC-cCC
Q 045967 288 GYSQFVGPVPASLGNLTQLTLLHLMHNNFSSH-IPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNN-QLA 364 (929)
Q Consensus 288 s~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n-~l~ 364 (929)
++|.+.+..+. +.++++|++|++++|.+++. +|..+.++++|++|++++|.+++..+. ++++++|++|++++| .++
T Consensus 78 ~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 78 PRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp TTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred CCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 99988876655 56789999999999988765 777888899999999999988766555 778888999888888 454
Q ss_pred CCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccc-cCCCC-CCCC--CCC-CCcEEEecCC--CCC-CCCccccc
Q 045967 365 GPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDN-QLSGH-IDEF--PSK-SLQNIYLSNN--RLQ-GSIPSSIF 436 (929)
Q Consensus 365 ~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~~~~--~l~-~L~~L~Ls~N--~l~-~~~p~~l~ 436 (929)
+. .++..+.++++|++|++++| .+++. ++.. .++ +|++|++++| .++ +.++..+.
T Consensus 157 ~~-----------------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 157 EF-----------------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp HH-----------------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred HH-----------------HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 21 23445667778888888887 76642 2222 566 7788888777 444 34566667
Q ss_pred cCCCCcEEeccCCC-CcCccchhhhhccCcccEEEccCCCCCCCccccccC-CCCCcceeeccccCCCCCChhhhcc-cc
Q 045967 437 ELVNLIDLQLDSNN-FSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDI-PFPKFSYLSLFACNISAFPSFLRTQ-DK 513 (929)
Q Consensus 437 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~lp~~l~~~-~~ 513 (929)
++++|++|++++|. +++..+ ..+..+++|++|++++|. .........+ .+++|+.|++++| ++. ..+..+ ..
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~ 294 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEA 294 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHH
T ss_pred hCCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhh
Confidence 77888888888887 554444 567777888888888773 1111100111 3455555555555 210 012222 23
Q ss_pred cceeccCCCcCCCCCchhh
Q 045967 514 LFYLDLSESKIDGQIPRWI 532 (929)
Q Consensus 514 L~~L~Ls~N~l~~~~p~~l 532 (929)
+..|++++|++++..|..+
T Consensus 295 l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 295 LPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp STTSEESCCCSCCTTCSSC
T ss_pred CcceEEecccCccccCCcc
Confidence 4455556666665555444
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=203.99 Aligned_cols=192 Identities=18% Similarity=0.160 Sum_probs=131.9
Q ss_pred CCCCcEEECCCCCCCCCCcccc--CCCCCCCEEeccCccCCCCCc----cccCCCCCCCEEEccCCcCCCCCCC-CCCCC
Q 045967 279 LKLLGRLMLGYSQFVGPVPASL--GNLTQLTLLHLMHNNFSSHIP----SSLSNLVQLTCLDLSGNSFVGEIPD-IVNLT 351 (929)
Q Consensus 279 l~~L~~L~Ls~n~l~~~lp~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~ 351 (929)
+++|++|++++|.+.+..|..+ .++++|++|+|++|.+++..+ ..+..+++|++|++++|.+.+..+. +.+++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568888888888888888777 788888888888888887554 3455788888888888888777665 77888
Q ss_pred CCCEEeCCCCcCCCC--C--------CCCCcEEEcCCCCCCCCCCc----cccCCCCCcEEEcccccCCCCCCCC--C--
Q 045967 352 QVSFFDLSNNQLAGP--V--------PSHEMLIRLNNNSLSGTIPS----WLFSLPLLEYVRLSDNQLSGHIDEF--P-- 413 (929)
Q Consensus 352 ~L~~L~Ls~n~l~~~--~--------p~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~~~~--~-- 413 (929)
+|++|++++|++.+. + -..|++|++++|+++. ++. .+.++++|++|+|++|++++..|.. .
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 888888888876531 0 0126666666666652 222 2356677777777777777664432 2
Q ss_pred -CCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCC
Q 045967 414 -SKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLS 477 (929)
Q Consensus 414 -l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 477 (929)
+++|++|++++|+++ .+|..+. ++|++|++++|++++.. .+..+++|+.|++++|++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP---QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC---CTTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc---hhhhCCCccEEECcCCCCC
Confidence 257777777777776 5566554 67777777777777651 2466677777777777543
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.2e-19 Score=213.49 Aligned_cols=207 Identities=22% Similarity=0.333 Sum_probs=156.6
Q ss_pred ccCCCCCCCCCC-----CCccc-ccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccc
Q 045967 202 KMISWKKDTNYC-----SWDGL-TCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANS 275 (929)
Q Consensus 202 ~l~sW~~~~~~C-----~W~Gv-~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~ 275 (929)
.+.+|..+.++| .|.|+ .|.. .+|+.|+|++|++++ +|..
T Consensus 32 ~l~~W~~~~~~~~~~~~~~~~l~~C~~-----------------~~L~~L~Ls~n~L~~-----------------lp~~ 77 (571)
T 3cvr_A 32 AWDKWEKQALPGENRNEAVSLLKECLI-----------------NQFSELQLNRLNLSS-----------------LPDN 77 (571)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHH-----------------TTCSEEECCSSCCSC-----------------CCSC
T ss_pred HHHHHhccCCccccccchhhhcccccc-----------------CCccEEEeCCCCCCc-----------------cCHh
Confidence 455686667778 69999 7853 268999999998854 3333
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCE
Q 045967 276 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSF 355 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~ 355 (929)
+ +++|++|+|++|.++ .+| ..+++|++|+|++|++++ +|. +.+ +|++|++++|++++ +|. .+++|++
T Consensus 78 l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~ 144 (571)
T 3cvr_A 78 L--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEY 144 (571)
T ss_dssp C--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCE
T ss_pred H--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC--cCccccE
Confidence 3 378999999999998 578 457999999999999997 777 665 99999999999998 555 7899999
Q ss_pred EeCCCCcCCCCCC---CCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCC-------cEEEecCC
Q 045967 356 FDLSNNQLAGPVP---SHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSL-------QNIYLSNN 425 (929)
Q Consensus 356 L~Ls~n~l~~~~p---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L-------~~L~Ls~N 425 (929)
|++++|.+++ +| ..|+.|++++|.+++ +|. +. ++|++|+|++|+|+ .+|.. ..+| +.|+|++|
T Consensus 145 L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~~-~~~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 145 INADNNQLTM-LPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPAV-PVRNHHSEETEIFFRCREN 217 (571)
T ss_dssp EECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCCC-C--------CCEEEECCSS
T ss_pred EeCCCCccCc-CCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhhH-HHhhhcccccceEEecCCC
Confidence 9999999986 44 237788888888776 565 55 77888888888877 33332 2256 77888888
Q ss_pred CCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccC
Q 045967 426 RLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLI 464 (929)
Q Consensus 426 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 464 (929)
+++ .+|..+..+++|+.|+|++|.+++.+| ..+..+.
T Consensus 218 ~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~ 254 (571)
T 3cvr_A 218 RIT-HIPENILSLDPTCTIILEDNPLSSRIR-ESLSQQT 254 (571)
T ss_dssp CCC-CCCGGGGGSCTTEEEECCSSSCCHHHH-HHHHHHH
T ss_pred cce-ecCHHHhcCCCCCEEEeeCCcCCCcCH-HHHHHhh
Confidence 777 567777777888888888888777665 5555543
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=1.1e-20 Score=214.01 Aligned_cols=243 Identities=19% Similarity=0.283 Sum_probs=159.6
Q ss_pred CCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCC---cCcCCCccccccCcccccceeeccCcccCCCC
Q 045967 557 SWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNN---RLSGTIPECIGNFSPWLSVSLNLNNNELEGAN 633 (929)
Q Consensus 557 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N---~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~ 633 (929)
.+++|+.|++++|.+++..+ ..++..+..+++|++|++++| ++++.+|..+..+
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l------------------- 86 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAA----RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL------------------- 86 (386)
T ss_dssp HCSCCCEEECTTSEECHHHH----HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH-------------------
T ss_pred cCCCccEEECCCCCCCHHHH----HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH-------------------
Confidence 34667777777777761100 112233556777777777775 3344445443110
Q ss_pred cccccCCCCCcEEEccCCcCCC----CCcccccCCCCCceeeccccccc-----------------------cccceeeC
Q 045967 634 PQSLVNCTKLEVLDIGNNKIND----VFPYWLGNLPELRVLVLRSNKLR-----------------------GSLRILDL 686 (929)
Q Consensus 634 p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~-----------------------~~L~~LdL 686 (929)
...+..+++|++|+|++|.+++ .++..+..+++|++|+|++|.++ ..|++|++
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 0122445555555555555554 23444455555555555555543 24666677
Q ss_pred CCCcCc-ccCCH--HHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccC----cc
Q 045967 687 SINNFS-GYLPA--RFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFD----GE 759 (929)
Q Consensus 687 s~N~l~-g~ip~--~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----~~ 759 (929)
++|+++ +.++. ..+..+++|+.|++++|.+...+.... .......+++|+.|+|++|.++ +.
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l-----------~~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 235 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL-----------LLEGLAYCQELKVLDLQDNTFTHLGSSA 235 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH-----------HHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH-----------HHHHhhcCCCccEEECcCCCCCcHHHHH
Confidence 777765 33442 345677889999999887642110000 0001233789999999999997 67
Q ss_pred cchhhccccccceeeccCccCCCC----CCcccc--CcCCCCEeeCCCCcCCC----CCchhh-ccCCCCCEEECccCcC
Q 045967 760 ISQVIGKLHSLRLLNLTHNHFTGK----IPSSLG--NLAKLESLDLSSNNLAG----KIPKQL-ASLTSLSVLNISHNRL 828 (929)
Q Consensus 760 ip~~l~~L~~L~~L~Ls~N~l~~~----ip~~l~--~L~~L~~LdLs~N~ls~----~ip~~l-~~L~~L~~L~Ls~N~l 828 (929)
+|..+..+++|++|+|++|.+++. +|..+. .+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 889999999999999999999876 567774 49999999999999998 488887 6689999999999999
Q ss_pred ccCCC
Q 045967 829 DGPIP 833 (929)
Q Consensus 829 ~g~iP 833 (929)
++..|
T Consensus 316 ~~~~~ 320 (386)
T 2ca6_A 316 SEEDD 320 (386)
T ss_dssp CTTSH
T ss_pred Ccchh
Confidence 97665
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=1.6e-21 Score=220.91 Aligned_cols=249 Identities=18% Similarity=0.224 Sum_probs=156.2
Q ss_pred hhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCC---CCCCCCcccc-------C
Q 045967 232 FQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYS---QFVGPVPASL-------G 301 (929)
Q Consensus 232 ~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n---~l~~~lp~~~-------~ 301 (929)
++..+..+++|++|+|++|.+++..+. .++..+.++++|++|+|++| .+++.+|..+ .
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~------------~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~ 91 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAAR------------WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHH------------HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHH------------HHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh
Confidence 456677778899999998877543222 23444677888999999886 4445566555 6
Q ss_pred CCCCCCEEeccCccCCC----CCccccCCCCCCCEEEccCCcCCCCCCC-----CCCC---------CCCCEEeCCCCcC
Q 045967 302 NLTQLTLLHLMHNNFSS----HIPSSLSNLVQLTCLDLSGNSFVGEIPD-----IVNL---------TQVSFFDLSNNQL 363 (929)
Q Consensus 302 ~l~~L~~L~Ls~n~l~~----~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-----l~~L---------~~L~~L~Ls~n~l 363 (929)
.+++|++|+|++|.+.+ .+|..+.++++|++|+|++|.+++..+. +..+ ++|++|++++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 78888899998888887 4677788888888888888887643332 2233 6777777777766
Q ss_pred CCCCCCCCcEEEcCCCCCCCCCC---ccccCCCCCcEEEcccccCCC-----CCC-CC-CCCCCcEEEecCCCCC----C
Q 045967 364 AGPVPSHEMLIRLNNNSLSGTIP---SWLFSLPLLEYVRLSDNQLSG-----HID-EF-PSKSLQNIYLSNNRLQ----G 429 (929)
Q Consensus 364 ~~~~p~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~-----~~~-~~-~l~~L~~L~Ls~N~l~----~ 429 (929)
+. +.++ ..+..+++|++|++++|+++. ..+ .. .+++|++|+|++|.++ +
T Consensus 172 ~~-----------------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 172 EN-----------------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234 (386)
T ss_dssp TG-----------------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred Cc-----------------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH
Confidence 51 1222 355667777777777777762 122 11 4566666666666664 3
Q ss_pred CCccccccCCCCcEEeccCCCCcCccc---hhhhh--ccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCC
Q 045967 430 SIPSSIFELVNLIDLQLDSNNFSGIAE---PYMFA--KLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAF 504 (929)
Q Consensus 430 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l 504 (929)
.+|..+..+++|++|+|++|.+++... +..+. .+++|++|+|++|.+...|. ..+
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~--------------------~~l 294 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV--------------------RTL 294 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH--------------------HHH
T ss_pred HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH--------------------HHH
Confidence 455566666666666666666654411 02232 25555555555553321100 015
Q ss_pred Chhh-hcccccceeccCCCcCCCCCc
Q 045967 505 PSFL-RTQDKLFYLDLSESKIDGQIP 529 (929)
Q Consensus 505 p~~l-~~~~~L~~L~Ls~N~l~~~~p 529 (929)
|..+ .++++|++|++++|.+++..+
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHhcCCCceEEEccCCcCCcchh
Confidence 5555 456777777777777776654
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=9.7e-20 Score=191.67 Aligned_cols=194 Identities=17% Similarity=0.250 Sum_probs=144.1
Q ss_pred CceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCC-CCCCCccccCCCCCCCEEeccC-ccCCC
Q 045967 241 KLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQ-FVGPVPASLGNLTQLTLLHLMH-NNFSS 318 (929)
Q Consensus 241 ~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~-l~~~lp~~~~~l~~L~~L~Ls~-n~l~~ 318 (929)
++++|++++|++++..+ ..+.++++|++|++++|. +++..+..|.++++|++|++++ |++++
T Consensus 32 ~l~~L~l~~n~l~~i~~----------------~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS----------------HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp TCCEEEEESCCCSEECT----------------TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred cccEEEEeCCcceEECH----------------HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 78888888887743322 246667888888888886 7665556788888888888888 88887
Q ss_pred CCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCC---EEeCCCC-cCCCCCCCCCcEEEcCCCCCCCCCCccccCCCC
Q 045967 319 HIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVS---FFDLSNN-QLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPL 394 (929)
Q Consensus 319 ~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~---~L~Ls~n-~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~ 394 (929)
..+..|.++++|++|++++|.+++ +|.+..+++|+ +|++++| .++ +..+..|.++++
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~------------------~i~~~~~~~l~~ 156 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMT------------------SIPVNAFQGLCN 156 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCC------------------EECTTTTTTTBS
T ss_pred cCHHHhCCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCCCcchh------------------hcCcccccchhc
Confidence 666778888888888888888876 55577777776 7776666 554 233455778888
Q ss_pred Cc-EEEcccccCCCCCCCC--CCCCCcEEEecCCC-CCCCCccccccC-CCCcEEeccCCCCcCccchhhhhccCcccEE
Q 045967 395 LE-YVRLSDNQLSGHIDEF--PSKSLQNIYLSNNR-LQGSIPSSIFEL-VNLIDLQLDSNNFSGIAEPYMFAKLIKLKYL 469 (929)
Q Consensus 395 L~-~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 469 (929)
|+ +|++++|+++ .++.. ..++|++|++++|+ +++..+..|.++ ++|+.|++++|++++..+ . .+++|+.|
T Consensus 157 L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-~---~~~~L~~L 231 (239)
T 2xwt_C 157 ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-K---GLEHLKEL 231 (239)
T ss_dssp SEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC-T---TCTTCSEE
T ss_pred ceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh-h---HhccCcee
Confidence 88 9999888887 44433 34678888888884 876656677888 888888888888887643 2 57778888
Q ss_pred EccCC
Q 045967 470 YISHN 474 (929)
Q Consensus 470 ~Ls~N 474 (929)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 88766
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=1.1e-20 Score=212.04 Aligned_cols=243 Identities=16% Similarity=0.170 Sum_probs=136.7
Q ss_pred ccccccCCCCCCcEEECCCCCCCCCCc----cccCCCC-CCCEEeccCccCCCCCccccCCC-----CCCCEEEccCCcC
Q 045967 271 ELANSIGNLKLLGRLMLGYSQFVGPVP----ASLGNLT-QLTLLHLMHNNFSSHIPSSLSNL-----VQLTCLDLSGNSF 340 (929)
Q Consensus 271 ~ip~~l~~l~~L~~L~Ls~n~l~~~lp----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~L-----~~L~~L~Ls~N~l 340 (929)
.+|..+...++|++|+|++|.+++..+ ..+.+++ +|++|+|++|.+++..+..+..+ ++|++|++++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 344445555668888888888776555 5666777 78888888887777666666554 7788888888877
Q ss_pred CCCCCC-----CCCC-CCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccC-CCCCcEEEcccccCCCCCCCC-
Q 045967 341 VGEIPD-----IVNL-TQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFS-LPLLEYVRLSDNQLSGHIDEF- 412 (929)
Q Consensus 341 ~~~~p~-----l~~L-~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~~~~- 412 (929)
++..+. +..+ ++|++|++++|.+++..+. .+...+.. .++|++|+|++|.+++.....
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--------------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS--------------EFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH--------------HHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH--------------HHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 765554 3344 6777777777776532210 01112333 246777777777666322111
Q ss_pred -----CC-CCCcEEEecCCCCCCCCcccccc----C-CCCcEEeccCCCCcCccc---hhhhhc-cCcccEEEccCCCCC
Q 045967 413 -----PS-KSLQNIYLSNNRLQGSIPSSIFE----L-VNLIDLQLDSNNFSGIAE---PYMFAK-LIKLKYLYISHNSLS 477 (929)
Q Consensus 413 -----~l-~~L~~L~Ls~N~l~~~~p~~l~~----l-~~L~~L~Ls~N~l~~~~~---~~~~~~-l~~L~~L~Ls~N~l~ 477 (929)
.. ++|++|+|++|++++..+..+.. + ++|++|+|++|.+++... +..+.. .++|++|++++|++.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 22 36777777777776555544433 3 477777777777665211 123333 346777777777554
Q ss_pred CCccc--ccc-CCCCCcceeeccccCCCCC--------ChhhhcccccceeccCCCcCCCC
Q 045967 478 LGTTF--KID-IPFPKFSYLSLFACNISAF--------PSFLRTQDKLFYLDLSESKIDGQ 527 (929)
Q Consensus 478 ~~~~~--~~~-~~~~~L~~L~L~~n~l~~l--------p~~l~~~~~L~~L~Ls~N~l~~~ 527 (929)
..+.. ... ..+++|+.|++++|.+..+ +..+..+++|++||+++|.+.+.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33221 111 1344455555555542222 22233444555555555555433
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=4.5e-19 Score=194.01 Aligned_cols=190 Identities=23% Similarity=0.340 Sum_probs=141.6
Q ss_pred CCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCC
Q 045967 239 MTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSS 318 (929)
Q Consensus 239 l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~ 318 (929)
+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+++
T Consensus 40 l~~L~~L~l~~~~i~~-----------------l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-----------------IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HHTCCEEECTTSCCCC-----------------CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC
T ss_pred cCCcCEEEeeCCCccC-----------------ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC
Confidence 4578888888887642 22 35667888888888888876 444 8888888888888888875
Q ss_pred CCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEE
Q 045967 319 HIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYV 398 (929)
Q Consensus 319 ~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 398 (929)
. ..+..+++|++|++++|.+++. +.+.++++|++|++++|.+++ ++. +.++++|++|
T Consensus 100 ~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~-------------------~~~-l~~l~~L~~L 156 (308)
T 1h6u_A 100 V--SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITN-------------------ISP-LAGLTNLQYL 156 (308)
T ss_dssp C--GGGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCC-------------------CGG-GGGCTTCCEE
T ss_pred c--hhhcCCCCCCEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCc-------------------Ccc-ccCCCCccEE
Confidence 3 3688888888888888888763 447788888888888887762 222 6777888888
Q ss_pred EcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCC
Q 045967 399 RLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSL 476 (929)
Q Consensus 399 ~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 476 (929)
++++|++++..+...+++|+.|++++|++++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++
T Consensus 157 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEE
T ss_pred EccCCcCCCChhhcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCee
Confidence 8888888765554467788888888888875433 777888888888888887763 367788888888888754
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=3.1e-19 Score=187.79 Aligned_cols=175 Identities=18% Similarity=0.199 Sum_probs=132.8
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCcc-CCCCCccccCCCCCCCEEEccC-CcCCCCCCC-CCCCCCCCEE
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNN-FSSHIPSSLSNLVQLTCLDLSG-NSFVGEIPD-IVNLTQVSFF 356 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~L~~L~~L~Ls~-N~l~~~~p~-l~~L~~L~~L 356 (929)
++|++|++++|.+++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+. +.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378999999999988667789999999999999997 8766666889999999999998 888876655 7788888888
Q ss_pred eCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCc---EEEcccc-cCCCCCCCC--CCCCCc-EEEecCCCCCC
Q 045967 357 DLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLE---YVRLSDN-QLSGHIDEF--PSKSLQ-NIYLSNNRLQG 429 (929)
Q Consensus 357 ~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~~~~--~l~~L~-~L~Ls~N~l~~ 429 (929)
++++|.+++ +|. +..+++|+ +|++++| .+++..+.. .+++|+ +|++++|+++
T Consensus 111 ~l~~n~l~~-------------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~- 169 (239)
T 2xwt_C 111 GIFNTGLKM-------------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT- 169 (239)
T ss_dssp EEEEECCCS-------------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-
T ss_pred eCCCCCCcc-------------------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-
Confidence 888887762 344 66666676 8888888 777554432 567788 8888888877
Q ss_pred CCccccccCCCCcEEeccCCC-CcCccchhhhhcc-CcccEEEccCCCC
Q 045967 430 SIPSSIFELVNLIDLQLDSNN-FSGIAEPYMFAKL-IKLKYLYISHNSL 476 (929)
Q Consensus 430 ~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l-~~L~~L~Ls~N~l 476 (929)
.+|......++|++|++++|+ ++++.+ ..|..+ ++|++|++++|++
T Consensus 170 ~i~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp EECTTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCC
T ss_pred ccCHhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCcc
Confidence 555544444778888888884 765543 567777 7777777777744
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=4.9e-20 Score=204.31 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=79.9
Q ss_pred CCcEEECCCCCCCCCCccccCCC--CCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCC-CCC-CCCCCCCCEE
Q 045967 281 LLGRLMLGYSQFVGPVPASLGNL--TQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGE-IPD-IVNLTQVSFF 356 (929)
Q Consensus 281 ~L~~L~Ls~n~l~~~lp~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~-~p~-l~~L~~L~~L 356 (929)
.++.++++++.+. |..+..+ +++++|++++|.+.+..+. +.++++|++|++++|.+++. ++. +.++++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777766654 3444444 6666666666666655443 44566666666666665543 333 4555555555
Q ss_pred eCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCC-CCcccc
Q 045967 357 DLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQG-SIPSSI 435 (929)
Q Consensus 357 ~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l 435 (929)
++++|.++ +..+..++++++|++|++++|. .+++ .++..+
T Consensus 124 ~L~~~~l~------------------~~~~~~l~~~~~L~~L~L~~~~---------------------~l~~~~l~~~~ 164 (336)
T 2ast_B 124 SLEGLRLS------------------DPIVNTLAKNSNLVRLNLSGCS---------------------GFSEFALQTLL 164 (336)
T ss_dssp ECTTCBCC------------------HHHHHHHTTCTTCSEEECTTCB---------------------SCCHHHHHHHH
T ss_pred eCcCcccC------------------HHHHHHHhcCCCCCEEECCCCC---------------------CCCHHHHHHHH
Confidence 55555443 1233445555555555555551 2332 133445
Q ss_pred ccCCCCcEEeccCC-CCcCccchhhhhccC-cccEEEccCC
Q 045967 436 FELVNLIDLQLDSN-NFSGIAEPYMFAKLI-KLKYLYISHN 474 (929)
Q Consensus 436 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~-~L~~L~Ls~N 474 (929)
.++++|++|++++| .+++...+..+..++ +|++|++++|
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 55555666666655 555431124455555 5666666555
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=8.8e-19 Score=191.73 Aligned_cols=195 Identities=25% Similarity=0.319 Sum_probs=150.9
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCE
Q 045967 276 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSF 355 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~ 355 (929)
..++++|++|++++|.+.. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ ++.+.++++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-chhhcCCCCCCE
Confidence 3457889999999998875 55 58889999999999999986544 8899999999999999885 456888889999
Q ss_pred EeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCcccc
Q 045967 356 FDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSI 435 (929)
Q Consensus 356 L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 435 (929)
|++++|.+++ ++ .+..+++|++|++++|.+++..+...+++|++|++++|++++. +. +
T Consensus 112 L~l~~n~l~~-------------------~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-l 169 (308)
T 1h6u_A 112 LDLTSTQITD-------------------VT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TP-L 169 (308)
T ss_dssp EECTTSCCCC-------------------CG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-G
T ss_pred EECCCCCCCC-------------------ch-hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC-hh-h
Confidence 9888888762 22 3788899999999999988765544778888888888888754 33 7
Q ss_pred ccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccc
Q 045967 436 FELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLF 515 (929)
Q Consensus 436 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~ 515 (929)
..+++|+.|++++|++++.. .+..+++|++|++++|++. .++ .+..+++|+
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~-------------------------~~~-~l~~l~~L~ 220 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDIS---PLASLPNLIEVHLKNNQIS-------------------------DVS-PLANTSNLF 220 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECTTSCCC-------------------------BCG-GGTTCTTCC
T ss_pred cCCCCCCEEECCCCccCcCh---hhcCCCCCCEEEccCCccC-------------------------ccc-cccCCCCCC
Confidence 88888888888888888763 2777888888888888543 233 255666777
Q ss_pred eeccCCCcCCC
Q 045967 516 YLDLSESKIDG 526 (929)
Q Consensus 516 ~L~Ls~N~l~~ 526 (929)
+|++++|.+++
T Consensus 221 ~L~l~~N~i~~ 231 (308)
T 1h6u_A 221 IVTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEccCCeeec
Confidence 77777777654
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.2e-18 Score=179.10 Aligned_cols=183 Identities=22% Similarity=0.233 Sum_probs=128.5
Q ss_pred CCCcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCC
Q 045967 213 CSWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQF 292 (929)
Q Consensus 213 C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l 292 (929)
|+|.+|.|+..+.. .+|..+ .++|++|++++|.+++..+ ..+.++++|++|++++|.+
T Consensus 7 C~~~~v~c~~~~l~----~~p~~~--~~~l~~L~l~~n~l~~~~~----------------~~~~~l~~L~~L~l~~n~l 64 (208)
T 2o6s_A 7 CSGTTVECYSQGRT----SVPTGI--PAQTTYLDLETNSLKSLPN----------------GVFDELTSLTQLYLGGNKL 64 (208)
T ss_dssp EETTEEECCSSCCS----SCCSCC--CTTCSEEECCSSCCCCCCT----------------TTTTTCTTCSEEECCSSCC
T ss_pred ECCCEEEecCCCcc----CCCCCC--CCCCcEEEcCCCccCcCCh----------------hhhcccccCcEEECCCCcc
Confidence 78999999865421 122222 3477888888887753322 2355667888888888888
Q ss_pred CCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCCCC
Q 045967 293 VGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPSHE 371 (929)
Q Consensus 293 ~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~L 371 (929)
++..+..|.++++|++|++++|++++..+..+.++++|++|++++|++++..+. +.++++|++|++++|.+++
T Consensus 65 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~------ 138 (208)
T 2o6s_A 65 QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS------ 138 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------
T ss_pred CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce------
Confidence 765555677788888888888888766666677888888888888888766655 6777777777777776652
Q ss_pred cEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCC
Q 045967 372 MLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVN 440 (929)
Q Consensus 372 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 440 (929)
..+..+.++++|++|++++|.+.+. +++|++|+++.|+++|.+|++++.++.
T Consensus 139 ------------~~~~~~~~l~~L~~L~l~~N~~~~~-----~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 139 ------------VPDGVFDRLTSLQYIWLHDNPWDCT-----CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------------CCTTTTTTCTTCCEEECCSCCBCCC-----TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------------eCHHHhccCCCccEEEecCCCeecC-----CCCHHHHHHHHHhCCceeeccCccccC
Confidence 2234467788888888888876643 457788888888888888877776554
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.2e-17 Score=174.47 Aligned_cols=130 Identities=25% Similarity=0.220 Sum_probs=87.5
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDL 358 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~L 358 (929)
++|++|+|++|.+++..|..|.++++|++|+|++|++....+..|.++++|++|+|++|++++..+. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 6777888888888777777778888888888888888765556677788888888888877766555 567777777777
Q ss_pred CCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCC--CCCCCcEEEecCCCCC
Q 045967 359 SNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEF--PSKSLQNIYLSNNRLQ 428 (929)
Q Consensus 359 s~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~ 428 (929)
++|+++ .+|..+.++++|++|+|++|++++..+.. .+++|+.|++++|.+.
T Consensus 120 s~N~l~-------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLT-------------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCC-------------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccc-------------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 777665 45556666667777766666665433221 3344444444444443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=1.1e-17 Score=186.42 Aligned_cols=239 Identities=16% Similarity=0.149 Sum_probs=157.8
Q ss_pred EecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccc-hhhhccCCCCEEeCCCCcCcCCCcc-ccccCcccccc
Q 045967 543 LNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREII-HSICDIIALDVLDLSNNRLSGTIPE-CIGNFSPWLSV 620 (929)
Q Consensus 543 L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~-~l~~l~~ll~~ 620 (929)
++.+++.++.++..-.+++++|++++|+++ .+| ..|.++++|++|+|++|++.+.+|. .|.+++.+ ..
T Consensus 14 v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~---------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l-~~ 83 (350)
T 4ay9_X 14 FLCQESKVTEIPSDLPRNAIELRFVLTKLR---------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL-HE 83 (350)
T ss_dssp EEEESTTCCSCCTTCCTTCSEEEEESCCCS---------EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC-CE
T ss_pred EEecCCCCCccCcCcCCCCCEEEccCCcCC---------CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh-hh
Confidence 444444444443333345666666667664 333 3467788888888888887766664 45566653 33
Q ss_pred eeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeecccc-ccccccceeeCCCCcCcccCCHHH
Q 045967 621 SLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSN-KLRGSLRILDLSINNFSGYLPARF 699 (929)
Q Consensus 621 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~L~~LdLs~N~l~g~ip~~~ 699 (929)
.+.++.|++....|..|.++++|++|++++|+++...+..+....++..|++.++ ++. .+|...
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~---------------~l~~~~ 148 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH---------------TIERNS 148 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC---------------EECTTS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc---------------cccccc
Confidence 5777788888888888899999999999999998877666666667777766543 332 344443
Q ss_pred Hhhhh-cccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccc-cccCcccchhhccccccceeeccC
Q 045967 700 FEKLN-AMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSS-NGFDGEISQVIGKLHSLRLLNLTH 777 (929)
Q Consensus 700 ~~~l~-~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~-N~l~~~ip~~l~~L~~L~~L~Ls~ 777 (929)
|..+. .++.|++++|.++.++...+. ...|+.|++++ |.++...++.|+++++|++|||++
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~f~-----------------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSAFN-----------------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTSST-----------------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hhhcchhhhhhccccccccCCChhhcc-----------------ccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 44433 466677777777666544332 34678888875 555544445688999999999999
Q ss_pred ccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCc
Q 045967 778 NHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNR 827 (929)
Q Consensus 778 N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~ 827 (929)
|+|+...+..|. +|+.|.+.++.--..+| .+.++++|+.++++++.
T Consensus 212 N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 212 TRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp SCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred CCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 999855444444 45555554444334666 47888999999998654
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=3.4e-17 Score=192.62 Aligned_cols=192 Identities=22% Similarity=0.333 Sum_probs=133.3
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLS 359 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls 359 (929)
.+|++|+|++|.+++ +|..+. ++|++|+|++|+++ .+| ..+++|++|++++|++++ +|.+.+ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECC
Confidence 389999999999887 777664 78999999999988 566 457889999999998887 444444 77777777
Q ss_pred CCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCC
Q 045967 360 NNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELV 439 (929)
Q Consensus 360 ~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 439 (929)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|+|++|++++ +|. |. +
T Consensus 129 ~N~l~~-------------------lp~---~l~~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~L~~-lp~-l~--~ 180 (571)
T 3cvr_A 129 NNQLTM-------------------LPE---LPALLEYINADNNQLTM-LPE-LPTSLEVLSVRNNQLTF-LPE-LP--E 180 (571)
T ss_dssp SSCCSC-------------------CCC---CCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSC-CCC-CC--T
T ss_pred CCcCCC-------------------CCC---cCccccEEeCCCCccCc-CCC-cCCCcCEEECCCCCCCC-cch-hh--C
Confidence 776652 344 56778888888888876 443 56777888888887775 555 54 7
Q ss_pred CCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceecc
Q 045967 440 NLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDL 519 (929)
Q Consensus 440 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~L 519 (929)
+|+.|+|++|+++.+ | . +.. +| . ...+.|+.|++++|.++.+|..+..+++|+.|++
T Consensus 181 ~L~~L~Ls~N~L~~l-p-~-~~~--~L-----~-------------~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 181 SLEALDVSTNLLESL-P-A-VPV--RN-----H-------------HSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp TCCEEECCSSCCSSC-C-C-CC----------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEEC
T ss_pred CCCEEECcCCCCCch-h-h-HHH--hh-----h-------------cccccceEEecCCCcceecCHHHhcCCCCCEEEe
Confidence 777777777777743 2 2 222 33 0 0112234555555555677777777888888888
Q ss_pred CCCcCCCCCchhh
Q 045967 520 SESKIDGQIPRWI 532 (929)
Q Consensus 520 s~N~l~~~~p~~l 532 (929)
++|.+++.+|..+
T Consensus 238 ~~N~l~~~~p~~l 250 (571)
T 3cvr_A 238 EDNPLSSRIRESL 250 (571)
T ss_dssp CSSSCCHHHHHHH
T ss_pred eCCcCCCcCHHHH
Confidence 8888887777766
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=6.9e-18 Score=175.04 Aligned_cols=158 Identities=24% Similarity=0.306 Sum_probs=134.0
Q ss_pred cEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccc
Q 045967 644 EVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEY 723 (929)
Q Consensus 644 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~ 723 (929)
+.+++++|.++.+ |..+. +.++.| ++++|.+++..|...|..+++|+.|++++|.+..++...
T Consensus 14 ~~l~~s~n~l~~i-P~~~~--~~~~~L--------------~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~ 76 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHIP--QYTAEL--------------RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76 (220)
T ss_dssp TEEECCSSCCSSC-CSCCC--TTCSEE--------------ECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT
T ss_pred CEeEeCCCCcccC-ccCCC--CCCCEE--------------EcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH
Confidence 5899999999875 55443 234555 555555555556666788999999999999987776543
Q ss_pred cccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCc
Q 045967 724 YQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNN 803 (929)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ 803 (929)
+.. +++|+.|+|++|++++..+..|+++++|++|+|++|++++..|..|..+++|++|+|++|+
T Consensus 77 ~~~----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 77 FEG----------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp TTT----------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred hCC----------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 332 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhccCCCCCEEECccCcCccCCCC
Q 045967 804 LAGKIPKQLASLTSLSVLNISHNRLDGPIPQ 834 (929)
Q Consensus 804 ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~ 834 (929)
+++..|..|..+++|+.|++++|++.+.++.
T Consensus 141 l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 141 ITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 9999999999999999999999999998774
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=9e-17 Score=179.15 Aligned_cols=237 Identities=16% Similarity=0.083 Sum_probs=173.4
Q ss_pred CEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCC
Q 045967 331 TCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHID 410 (929)
Q Consensus 331 ~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 410 (929)
++++.++++++..+..+ .+++++|+|++|+++ ...+..|.++++|++|+|++|++.+.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~------------------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLR------------------VIQKGAFSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCS------------------EECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCC------------------CcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence 45667777766432223 235555555555554 3334568999999999999999987776
Q ss_pred CC---CCCCCc-EEEecCCCCCCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCcccccc-
Q 045967 411 EF---PSKSLQ-NIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKID- 485 (929)
Q Consensus 411 ~~---~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~- 485 (929)
.. .+++++ .+.+++|+++...|..|..+++|++|++++|++.+..+ ..+....++..|++.++ .....++..
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~--~~i~~l~~~~ 148 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDN--INIHTIERNS 148 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-CTTCCBSSCEEEEEESC--TTCCEECTTS
T ss_pred hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc-hhhcccchhhhhhhccc--cccccccccc
Confidence 54 566665 46777899997778899999999999999999988765 56677778889999775 222233322
Q ss_pred C-C-CCCcceeeccccCCCCCChhhhcccccceeccCC-CcCCCCCchhhhccCCCCccEEecccccccccccCCCCCcc
Q 045967 486 I-P-FPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSE-SKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLG 562 (929)
Q Consensus 486 ~-~-~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~-N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~ 562 (929)
+ . ...++.|++++|+++.+|.......+|+.+++++ |.++...+..| ..+++|++|++++|+++.+++..+.+|+
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f--~~l~~L~~LdLs~N~l~~lp~~~~~~L~ 226 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF--HGASGPVILDISRTRIHSLPSYGLENLK 226 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTT--TTEECCSEEECTTSCCCCCCSSSCTTCC
T ss_pred hhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHh--ccCcccchhhcCCCCcCccChhhhccch
Confidence 2 2 3468889999999998888777778899999986 55554444556 6788999999999999999888888888
Q ss_pred EEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCC
Q 045967 563 YLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNN 601 (929)
Q Consensus 563 ~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N 601 (929)
.|.+.++.-- ..+| .+.++++|+.++++++
T Consensus 227 ~L~~l~~~~l--------~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 227 KLRARSTYNL--------KKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp EEECTTCTTC--------CCCC-CTTTCCSCCEEECSCH
T ss_pred HhhhccCCCc--------CcCC-CchhCcChhhCcCCCC
Confidence 8887766543 3444 3667788888887654
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=5.7e-17 Score=166.53 Aligned_cols=194 Identities=23% Similarity=0.263 Sum_probs=122.0
Q ss_pred EEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccce
Q 045967 542 YLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVS 621 (929)
Q Consensus 542 ~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~ 621 (929)
.++.+++.++.++....++|++|++++|.++ +..+..+..+++|++|++++|++++..+..+..++.+ ++
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~ 80 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLK--------SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL--TY 80 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCC--------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC--CE
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccC--------cCChhhhcccccCcEEECCCCccCccChhhcCCCCCc--CE
Confidence 3444444444444444455666666666665 2223345666777777777777775444445555553 46
Q ss_pred eeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHh
Q 045967 622 LNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFE 701 (929)
Q Consensus 622 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~ 701 (929)
|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|+++ .+|...+.
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~---------------~~~~~~~~ 145 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK---------------SVPDGVFD 145 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS---------------CCCTTTTT
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc---------------eeCHHHhc
Confidence 777777777666666777777777777777777776666777777777666666554 23322222
Q ss_pred hhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCC
Q 045967 702 KLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFT 781 (929)
Q Consensus 702 ~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~ 781 (929)
. +++|+.|++++|.+.+ .+++|+.|+++.|+++
T Consensus 146 ~----------------------------------------l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 146 R----------------------------------------LTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp T----------------------------------------CTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred c----------------------------------------CCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 1 4567777888887664 3456788888888888
Q ss_pred CCCCccccCcCCCCEeeCCCCcCCCCCchh
Q 045967 782 GKIPSSLGNLAKLESLDLSSNNLAGKIPKQ 811 (929)
Q Consensus 782 ~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~ 811 (929)
|.+|..++.++. ++..|...+..+.+
T Consensus 179 g~ip~~~~~l~~----~~~~C~~~~~~~~~ 204 (208)
T 2o6s_A 179 GVVRNSAGSVAP----DSAKCSGSGKPVRS 204 (208)
T ss_dssp TTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred ceeeccCccccC----CccccccCCCccee
Confidence 888888777665 56666655554443
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=4.8e-17 Score=176.33 Aligned_cols=171 Identities=24% Similarity=0.337 Sum_probs=128.8
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCE
Q 045967 276 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSF 355 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~ 355 (929)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +.++++|++|++++|.+++ ++.+.++++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSSLKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCE
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-ChhhccCCCCCE
Confidence 3456788888888888775 34 47778888888888888886544 8888888888888888875 455788888888
Q ss_pred EeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCcccc
Q 045967 356 FDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSI 435 (929)
Q Consensus 356 L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 435 (929)
|++++|.+++ + ..+..+++|++|++++|++++......+++|++|++++|++++..+ +
T Consensus 117 L~L~~n~i~~-------------------~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 117 LSLEHNGISD-------------------I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp EECTTSCCCC-------------------C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred EECCCCcCCC-------------------C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--h
Confidence 8888887762 2 3467778888888888888765222267788888888888875544 7
Q ss_pred ccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCC
Q 045967 436 FELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSL 476 (929)
Q Consensus 436 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 476 (929)
..+++|+.|++++|.+++. ..+..+++|+.|++++|++
T Consensus 175 ~~l~~L~~L~L~~N~i~~l---~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp TTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCCC---hhhccCCCCCEEECcCCcc
Confidence 7888888888888888775 2477888888888888854
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=3.2e-17 Score=183.62 Aligned_cols=179 Identities=25% Similarity=0.291 Sum_probs=141.2
Q ss_pred CEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCccccc-CCCCCcEEEccCCcCCCCCcccccCCCCCceeec
Q 045967 594 DVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLV-NCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVL 672 (929)
Q Consensus 594 ~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 672 (929)
+.+++++++++ .+|..+... .+.|++++|.+++..+..+. ++++|++|+|++|+|+++.+..|..+++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~~~----l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLPSY----TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCCTT----CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCCCC----CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 57788888777 566654332 24788888888888777777 8899999999999999888888888998888877
Q ss_pred cccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeecc
Q 045967 673 RSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFS 752 (929)
Q Consensus 673 s~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 752 (929)
++|+++ .++...|. .+++|+.|+|+
T Consensus 96 s~N~l~---------------~~~~~~~~----------------------------------------~l~~L~~L~L~ 120 (361)
T 2xot_A 96 SSNHLH---------------TLDEFLFS----------------------------------------DLQALEVLLLY 120 (361)
T ss_dssp CSSCCC---------------EECTTTTT----------------------------------------TCTTCCEEECC
T ss_pred CCCcCC---------------cCCHHHhC----------------------------------------CCcCCCEEECC
Confidence 777665 23322222 15678899999
Q ss_pred ccccCcccchhhccccccceeeccCccCCCCCCccc---cCcCCCCEeeCCCCcCCCCCchhhccCCC--CCEEECccCc
Q 045967 753 SNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSL---GNLAKLESLDLSSNNLAGKIPKQLASLTS--LSVLNISHNR 827 (929)
Q Consensus 753 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l---~~L~~L~~LdLs~N~ls~~ip~~l~~L~~--L~~L~Ls~N~ 827 (929)
+|++++..|..|.++++|+.|+|++|++++..+..| ..+++|+.|||++|+|++..+..+..++. |+.|++++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 999998888999999999999999999996555555 67999999999999999877788888887 4889999999
Q ss_pred CccCC
Q 045967 828 LDGPI 832 (929)
Q Consensus 828 l~g~i 832 (929)
+.+.+
T Consensus 201 ~~C~C 205 (361)
T 2xot_A 201 LECDC 205 (361)
T ss_dssp EECCH
T ss_pred ccCCc
Confidence 98754
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=9.7e-17 Score=173.92 Aligned_cols=172 Identities=28% Similarity=0.372 Sum_probs=146.7
Q ss_pred CCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCC
Q 045967 238 NMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFS 317 (929)
Q Consensus 238 ~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~ 317 (929)
.+++|+.|++++|.+.+. +.+..+++|++|++++|.+++. +. +.++++|++|++++|.++
T Consensus 44 ~l~~L~~L~l~~~~i~~~------------------~~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV------------------QGIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHHTCCEEECTTSCCCCC------------------TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred hcCcccEEEccCCCcccC------------------hhHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC
Confidence 356899999999987432 2367789999999999999874 44 999999999999999998
Q ss_pred CCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcE
Q 045967 318 SHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEY 397 (929)
Q Consensus 318 ~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 397 (929)
+ + ..+..+++|++|++++|++++ ++.+..+++|++|++++|.+++ + ..+.++++|++
T Consensus 104 ~-~-~~l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~-------------------~-~~l~~l~~L~~ 160 (291)
T 1h6t_A 104 D-L-SSLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITD-------------------I-TVLSRLTKLDT 160 (291)
T ss_dssp C-G-GGGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCC-------------------C-GGGGGCTTCSE
T ss_pred C-C-hhhccCCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCcCCc-------------------c-hhhccCCCCCE
Confidence 6 3 359999999999999999986 4678999999999999998873 2 46888999999
Q ss_pred EEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCCCCcEEeccCCCCcCc
Q 045967 398 VRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELVNLIDLQLDSNNFSGI 454 (929)
Q Consensus 398 L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 454 (929)
|++++|++++..+...+++|++|++++|.+++ ++ .+..+++|+.|++++|++...
T Consensus 161 L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 161 LSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred EEccCCccccchhhcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 99999999987775588999999999999985 44 488999999999999998765
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=1.7e-16 Score=165.66 Aligned_cols=155 Identities=26% Similarity=0.358 Sum_probs=118.6
Q ss_pred eeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHH
Q 045967 621 SLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFF 700 (929)
Q Consensus 621 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~ 700 (929)
.++.+++.+... |..+ .++|++|+|++|++++..|..+..+++|++|+|++|+++ .+|...|
T Consensus 23 ~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~---------------~i~~~~~ 84 (229)
T 3e6j_A 23 TVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG---------------ALPVGVF 84 (229)
T ss_dssp EEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------CCCTTTT
T ss_pred EeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC---------------CcChhhc
Confidence 344444444433 2222 267788888888888877777777777777766666554 3343222
Q ss_pred hhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccC
Q 045967 701 EKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHF 780 (929)
Q Consensus 701 ~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l 780 (929)
.. +++|+.|+|++|++++..+..|..+++|++|+|++|++
T Consensus 85 ~~----------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 85 DS----------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp TT----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cc----------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 11 56778888888888877777788999999999999999
Q ss_pred CCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCCCC
Q 045967 781 TGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPIPQ 834 (929)
Q Consensus 781 ~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~iP~ 834 (929)
+ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+.++.
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 9 7888999999999999999999987778899999999999999999988763
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=5.9e-17 Score=167.95 Aligned_cols=91 Identities=19% Similarity=0.228 Sum_probs=74.1
Q ss_pred cccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEE
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~ 822 (929)
+++|+.|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 79 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 45566677777777755556677888888899999998888888888899999999999999888777888889999999
Q ss_pred CccCcCccCCC
Q 045967 823 ISHNRLDGPIP 833 (929)
Q Consensus 823 Ls~N~l~g~iP 833 (929)
+++|++.+..+
T Consensus 159 L~~N~~~c~c~ 169 (220)
T 2v9t_B 159 LAQNPFICDCH 169 (220)
T ss_dssp CCSSCEECSGG
T ss_pred eCCCCcCCCCc
Confidence 99999887554
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=163.09 Aligned_cols=156 Identities=28% Similarity=0.372 Sum_probs=127.9
Q ss_pred CEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCc-ccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeec
Q 045967 594 DVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANP-QSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVL 672 (929)
Q Consensus 594 ~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 672 (929)
+.+++++|.++ .+|..+.... +.|++++|.+++..+ ..|.++++|++|++++|+++++.+..|.++++|++|+|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~~~~----~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIPQYT----AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCS-SCCSCCCTTC----SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcc-cCccCCCCCC----CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 57888888877 5676554322 478888888888754 45788999999999999999988888999999988877
Q ss_pred cccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeecc
Q 045967 673 RSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFS 752 (929)
Q Consensus 673 s~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 752 (929)
++|+++ .++...|. .+++|+.|+|+
T Consensus 89 s~N~l~---------------~~~~~~~~----------------------------------------~l~~L~~L~Ls 113 (220)
T 2v70_A 89 TSNRLE---------------NVQHKMFK----------------------------------------GLESLKTLMLR 113 (220)
T ss_dssp CSSCCC---------------CCCGGGGT----------------------------------------TCSSCCEEECT
T ss_pred CCCccC---------------ccCHhHhc----------------------------------------CCcCCCEEECC
Confidence 777665 33433322 16778999999
Q ss_pred ccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCc
Q 045967 753 SNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIP 809 (929)
Q Consensus 753 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip 809 (929)
+|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|.+++..+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999989999999999999999999999999999999999999999999987654
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=2.4e-16 Score=187.35 Aligned_cols=166 Identities=25% Similarity=0.354 Sum_probs=74.5
Q ss_pred CCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeC
Q 045967 279 LKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDL 358 (929)
Q Consensus 279 l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~L 358 (929)
+++|++|++++|.+.. +| .+..+++|++|+|++|.+.+..| +..+++|++|+|++|.+.+ ++.+..+++|++|+|
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEe
Confidence 3444444444444433 22 24444455555555554443322 4444555555555554443 233444455555554
Q ss_pred CCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccC
Q 045967 359 SNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFEL 438 (929)
Q Consensus 359 s~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 438 (929)
++|.+++ + ..+..+++|+.|+|++|.+++......+++|+.|+|++|.+++..| +..+
T Consensus 117 s~N~l~~-------------------l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l 174 (605)
T 1m9s_A 117 EHNGISD-------------------I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL 174 (605)
T ss_dssp TTSCCCC-------------------C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred cCCCCCC-------------------C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hccC
Confidence 4444431 1 1233444444444444444433111144444444444444443333 4445
Q ss_pred CCCcEEeccCCCCcCccchhhhhccCcccEEEccCC
Q 045967 439 VNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHN 474 (929)
Q Consensus 439 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 474 (929)
++|+.|+|++|++++. ..+..+++|+.|+|++|
T Consensus 175 ~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp TTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSE
T ss_pred CCCCEEECcCCCCCCC---hHHccCCCCCEEEccCC
Confidence 5555555555555443 13444555555555555
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=8e-16 Score=182.91 Aligned_cols=191 Identities=24% Similarity=0.296 Sum_probs=129.5
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEeCC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFDLS 359 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~Ls 359 (929)
..+..++++.+.+...++ +..+++|++|++++|.+... + .+..+++|++|+|++|.+.+..+ +.++++|+.|+|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 345566777777765433 46788899999999988753 3 58888999999999998887555 8888888888888
Q ss_pred CCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCccccccCC
Q 045967 360 NNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFELV 439 (929)
Q Consensus 360 ~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 439 (929)
+|.+++ +| .+..+++|++|+|++|.+++......+++|+.|+|++|.+++. ..+..++
T Consensus 96 ~N~l~~-------------------l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~ 153 (605)
T 1m9s_A 96 ENKIKD-------------------LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLT 153 (605)
T ss_dssp SSCCCC-------------------CT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCT
T ss_pred CCCCCC-------------------Ch-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccC
Confidence 887762 22 4677788888888888877542222566777777777776644 4566666
Q ss_pred CCcEEeccCCCCcCccchhhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCCCChhhhcccccceecc
Q 045967 440 NLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISAFPSFLRTQDKLFYLDL 519 (929)
Q Consensus 440 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~L 519 (929)
+|+.|+|++|.+.+..+ +..+++|+.|+|++|++ +.+| .+..+++|+.|+|
T Consensus 154 ~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i-------------------------~~l~-~l~~l~~L~~L~L 204 (605)
T 1m9s_A 154 KLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHI-------------------------SDLR-ALAGLKNLDVLEL 204 (605)
T ss_dssp TCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-------------------------CBCG-GGTTCTTCSEEEC
T ss_pred CCCEEECcCCcCCCchh---hccCCCCCEEECcCCCC-------------------------CCCh-HHccCCCCCEEEc
Confidence 67777776666666532 55666666666666633 2232 3555666666666
Q ss_pred CCCcCCC
Q 045967 520 SESKIDG 526 (929)
Q Consensus 520 s~N~l~~ 526 (929)
++|.+.+
T Consensus 205 ~~N~l~~ 211 (605)
T 1m9s_A 205 FSQECLN 211 (605)
T ss_dssp CSEEEEC
T ss_pred cCCcCcC
Confidence 6666654
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=6.7e-16 Score=160.01 Aligned_cols=153 Identities=24% Similarity=0.404 Sum_probs=126.2
Q ss_pred CEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeecc
Q 045967 594 DVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLR 673 (929)
Q Consensus 594 ~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 673 (929)
+.++++++.++ .+|..+. .. + +.|++++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~-l-~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ET-I-TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TT-C-CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC--cC-C-CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 56777777776 5665543 12 2 478888888888877788999999999999999999888899999999888777
Q ss_pred ccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEeeccc
Q 045967 674 SNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSS 753 (929)
Q Consensus 674 ~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~ 753 (929)
+|+++ .+|...|.. +++|+.|+|++
T Consensus 89 ~N~l~---------------~l~~~~f~~----------------------------------------l~~L~~L~L~~ 113 (220)
T 2v9t_B 89 GNKIT---------------ELPKSLFEG----------------------------------------LFSLQLLLLNA 113 (220)
T ss_dssp SSCCC---------------CCCTTTTTT----------------------------------------CTTCCEEECCS
T ss_pred CCcCC---------------ccCHhHccC----------------------------------------CCCCCEEECCC
Confidence 77665 455433221 56788999999
Q ss_pred cccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCC
Q 045967 754 NGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAG 806 (929)
Q Consensus 754 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~ 806 (929)
|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 114 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 114 NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999989999999999999999999998888889999999999999999875
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=170.55 Aligned_cols=155 Identities=23% Similarity=0.190 Sum_probs=87.7
Q ss_pred CCcEEECCCCCCCCCCccccC-CCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeC
Q 045967 281 LLGRLMLGYSQFVGPVPASLG-NLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDL 358 (929)
Q Consensus 281 ~L~~L~Ls~n~l~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~L 358 (929)
.+++|+|++|.+++..+..+. ++++|++|+|++|++++..+..|.++++|++|+|++|++++..+. +.++++|++|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 456666666666655555554 566666666666666655555566666666666666666544443 455555555555
Q ss_pred CCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCcccc---
Q 045967 359 SNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSI--- 435 (929)
Q Consensus 359 s~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--- 435 (929)
++|.+++ ..|..|.++++|++|+|++| ++++..+..|
T Consensus 120 ~~N~i~~------------------~~~~~~~~l~~L~~L~L~~N----------------------~l~~l~~~~~~~~ 159 (361)
T 2xot_A 120 YNNHIVV------------------VDRNAFEDMAQLQKLYLSQN----------------------QISRFPVELIKDG 159 (361)
T ss_dssp CSSCCCE------------------ECTTTTTTCTTCCEEECCSS----------------------CCCSCCGGGTC--
T ss_pred CCCcccE------------------ECHHHhCCcccCCEEECCCC----------------------cCCeeCHHHhcCc
Confidence 5554431 22334444455555555544 4443222223
Q ss_pred ccCCCCcEEeccCCCCcCccchhhhhccCc--ccEEEccCCCC
Q 045967 436 FELVNLIDLQLDSNNFSGIAEPYMFAKLIK--LKYLYISHNSL 476 (929)
Q Consensus 436 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~--L~~L~Ls~N~l 476 (929)
..+++|+.|+|++|+++++.+ ..+..++. ++.|+|++|++
T Consensus 160 ~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp --CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEECCSSCE
T ss_pred ccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEEecCCCc
Confidence 457777777777777776543 56777766 37778887754
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=5.1e-18 Score=200.57 Aligned_cols=90 Identities=26% Similarity=0.359 Sum_probs=82.0
Q ss_pred cccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCC-chhhccCCCCCEE
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKI-PKQLASLTSLSVL 821 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~i-p~~l~~L~~L~~L 821 (929)
+++|+.|+|++|+++ .+|..|+++++|+.|+|++|++++ +| .++++++|+.|+|++|+|++.+ |..+..+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 678899999999999 789999999999999999999996 67 8999999999999999999887 9999999999999
Q ss_pred ECccCcCccCCCCC
Q 045967 822 NISHNRLDGPIPQG 835 (929)
Q Consensus 822 ~Ls~N~l~g~iP~~ 835 (929)
++++|++++..|..
T Consensus 539 ~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 539 NLQGNSLCQEEGIQ 552 (567)
T ss_dssp ECTTSGGGGSSSCT
T ss_pred EecCCcCCCCccHH
Confidence 99999999877743
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=2.8e-16 Score=159.20 Aligned_cols=114 Identities=19% Similarity=0.280 Sum_probs=97.8
Q ss_pred cccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEE
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~ 822 (929)
+++|+.|+|++|++++..|..|+++++|++|+|++|++++..|..|.++++|++|+|++|++++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCcCccCCCCCCCCCccccccccCCcCCCCCC
Q 045967 823 ISHNRLDGPIPQGPQFNTIQEDSYIGNLGLCGFS 856 (929)
Q Consensus 823 Ls~N~l~g~iP~~~~~~~~~~~~~~gn~~Lcg~~ 856 (929)
+++|+++|.+|.......+....+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999988743222223333455665566654
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=7.7e-17 Score=196.44 Aligned_cols=220 Identities=19% Similarity=0.098 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCcccccccccccCCCCC-CCCCCCCcccccCCCCcccccCchhhhhcCCCCceEEEcCC
Q 045967 171 CPHEQSSALIQFKQLFSFDGDSSFVCQHSYPKMISWKK-DTNYCSWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLAS 249 (929)
Q Consensus 171 c~~~e~~aLl~~k~~l~~~~~~~~~~~~~~~~l~sW~~-~~~~C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 249 (929)
....++++|+++..+....... .-..|.. .+..+.|.++++... +++.|+|.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~-----------------~~~~l~L~~ 182 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTA---------KKQQPTGDSTPSGTATNSAVSTP-----------------LTPKIELFA 182 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTT---------C------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCc---------ccCCCcCCCCccccCCCceecCC-----------------ccceEEeeC
Confidence 4466888999998876432211 2234643 345678988887643 466777777
Q ss_pred CCCCCCCCcccccccccccccccccccCCCCC-----CcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCcccc
Q 045967 250 LEMSTVVPDSLKNLSSSLTFSELANSIGNLKL-----LGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSL 324 (929)
Q Consensus 250 ~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~-----L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l 324 (929)
+.+... + ..+..... +..++++.|.+. ..|..+..+++|++|+|++|.+. .+|..+
T Consensus 183 n~~~~~-~----------------~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~ 243 (727)
T 4b8c_D 183 NGKDEA-N----------------QALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANI 243 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGG
T ss_pred CCCCcc-h----------------hhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhh
Confidence 665432 1 11111111 112222233332 23555666666666666666665 455555
Q ss_pred CCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccc
Q 045967 325 SNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDN 403 (929)
Q Consensus 325 ~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 403 (929)
.++++|++|+|++|.++ .+|. ++++++|++|+|++|.++ .+|..|+++++|++|+|++|
T Consensus 244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-------------------~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-------------------SLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-------------------SCCSSGGGGTTCSEEECCSS
T ss_pred cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-------------------ccChhhcCCCCCCEEECCCC
Confidence 56666666666666666 3333 666666666666666554 34455555666666666666
Q ss_pred cCCCCCCCC--CCCCCcEEEecCCCCCCCCccccccCCC-CcEEeccCCCCcCccc
Q 045967 404 QLSGHIDEF--PSKSLQNIYLSNNRLQGSIPSSIFELVN-LIDLQLDSNNFSGIAE 456 (929)
Q Consensus 404 ~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~~ 456 (929)
.++ .+|.. .+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|
T Consensus 304 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 304 MVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 554 22222 4455555555555555555555443321 1234555555555443
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1.2e-15 Score=155.08 Aligned_cols=85 Identities=27% Similarity=0.302 Sum_probs=41.2
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCC
Q 045967 276 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVS 354 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~ 354 (929)
+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..|..++++++|++|++++|.+++..+. +.++++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 3444555555555554332 22445555555555555555544444555555555555555555443332 44444444
Q ss_pred EEeCCCCc
Q 045967 355 FFDLSNNQ 362 (929)
Q Consensus 355 ~L~Ls~n~ 362 (929)
+|++++|.
T Consensus 140 ~L~L~~n~ 147 (197)
T 4ezg_A 140 SIDLSYNG 147 (197)
T ss_dssp EEECCSCT
T ss_pred EEEccCCC
Confidence 44444443
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=5.9e-16 Score=165.06 Aligned_cols=149 Identities=22% Similarity=0.244 Sum_probs=79.5
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCE
Q 045967 276 IGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSF 355 (929)
Q Consensus 276 l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~ 355 (929)
+..+++|++|++++|.++. +| .+..+++|++|+|++|++++..+ +.++++|++|++++|++++ ++.+.. ++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~-~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS-ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC-SSCCE
T ss_pred hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc-CcccE
Confidence 4455667777777776654 44 46666677777777776665433 6666666677666666664 233333 55555
Q ss_pred EeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCcccc
Q 045967 356 FDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSI 435 (929)
Q Consensus 356 L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 435 (929)
|++++|.+++ + ..+.++++|++|++++|++++......+++|++|++++|++++. ..+
T Consensus 111 L~L~~N~l~~-------------------~-~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l 168 (263)
T 1xeu_A 111 LFLDNNELRD-------------------T-DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGL 168 (263)
T ss_dssp EECCSSCCSB-------------------S-GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred EEccCCccCC-------------------C-hhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HHh
Confidence 5555555441 1 23555666666666666555332111344444444444444432 334
Q ss_pred ccCCCCcEEeccCCCCc
Q 045967 436 FELVNLIDLQLDSNNFS 452 (929)
Q Consensus 436 ~~l~~L~~L~Ls~N~l~ 452 (929)
..+++|+.|++++|.+.
T Consensus 169 ~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTCCCCCEEEEEEEEEE
T ss_pred ccCCCCCEEeCCCCccc
Confidence 44444444444444443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=6.9e-18 Score=199.47 Aligned_cols=216 Identities=19% Similarity=0.147 Sum_probs=153.2
Q ss_pred CCCCcceeeccccCCCCCChhhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccccccCCCCCccEEEc
Q 045967 487 PFPKFSYLSLFACNISAFPSFLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQISWKNLGYLDL 566 (929)
Q Consensus 487 ~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~L 566 (929)
..+.|+.|++++|+++.+|..++.+++|+.|++++|......|..+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll---------------------------------- 392 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM---------------------------------- 392 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------------------
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHH----------------------------------
Confidence 4566777777777777888888888888888886654211111100
Q ss_pred CCCCCCCCCCCCCCcccchhhhccCCCCEEe-CCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcE
Q 045967 567 RSNLLQGPLPVPPSREIIHSICDIIALDVLD-LSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEV 645 (929)
Q Consensus 567 s~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~-Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~ 645 (929)
..+... +..|..++.+++|+.|+ ++.|.+. . + ..+.+++|.+....+ ..|+.
T Consensus 393 ~~~~~~--------~~~~~~l~~l~~L~~L~~l~~n~~~-----------~-L-~~l~l~~n~i~~l~~------~~L~~ 445 (567)
T 1dce_A 393 RALDPL--------LYEKETLQYFSTLKAVDPMRAAYLD-----------D-L-RSKFLLENSVLKMEY------ADVRV 445 (567)
T ss_dssp HHHCTG--------GGHHHHHHHHHHHHHHCGGGHHHHH-----------H-H-HHHHHHHHHHHHHHH------TTCSE
T ss_pred Hhcccc--------cCCHHHHHHHHhcccCcchhhcccc-----------h-h-hhhhhhcccccccCc------cCceE
Confidence 001112 45667778888888887 6666543 1 1 245566666655422 24888
Q ss_pred EEccCCcCCCCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccc
Q 045967 646 LDIGNNKINDVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQ 725 (929)
Q Consensus 646 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~ 725 (929)
|++++|+++++ |. ++.+++|+.|+|++|+++ .+|..+ .
T Consensus 446 L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~---------------~lp~~~-~------------------------ 483 (567)
T 1dce_A 446 LHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR---------------ALPPAL-A------------------------ 483 (567)
T ss_dssp EECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC---------------CCCGGG-G------------------------
T ss_pred EEecCCCCCCC-cC-ccccccCcEeecCccccc---------------ccchhh-h------------------------
Confidence 99999999885 55 888888887776666554 566432 1
Q ss_pred cceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCCC-CccccCcCCCCEeeCCCCcC
Q 045967 726 DSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKI-PSSLGNLAKLESLDLSSNNL 804 (929)
Q Consensus 726 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~i-p~~l~~L~~L~~LdLs~N~l 804 (929)
.+++|+.|+|++|++++ +| .++++++|++|+|++|++++.+ |..++.+++|+.|+|++|.+
T Consensus 484 ----------------~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 484 ----------------ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp ----------------GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred ----------------cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 16778899999999996 67 8999999999999999999887 99999999999999999999
Q ss_pred CCCCch---hhccCCCCCEEEC
Q 045967 805 AGKIPK---QLASLTSLSVLNI 823 (929)
Q Consensus 805 s~~ip~---~l~~L~~L~~L~L 823 (929)
++.+|. .+..+++|+.||+
T Consensus 546 ~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 546 CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCccHHHHHHHHCcccCccCC
Confidence 977553 2344789999875
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=5.9e-16 Score=165.09 Aligned_cols=168 Identities=20% Similarity=0.236 Sum_probs=128.4
Q ss_pred CCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCCCCCCEEe
Q 045967 278 NLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNLTQVSFFD 357 (929)
Q Consensus 278 ~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L~~L~~L~ 357 (929)
++.++..++++++.+++ ++ .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+ +.++++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 35667778888888875 34 57788999999999998884 45 68889999999999999887665 88888898888
Q ss_pred CCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCCCcccccc
Q 045967 358 LSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGSIPSSIFE 437 (929)
Q Consensus 358 Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 437 (929)
+++|++++ +|. +.. ++|++|++++|++++......+++|++|++++|++++. + .+..
T Consensus 92 L~~N~l~~-------------------l~~-~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~ 148 (263)
T 1xeu_A 92 VNRNRLKN-------------------LNG-IPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-V-MLGF 148 (263)
T ss_dssp CCSSCCSC-------------------CTT-CCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-G-GGGG
T ss_pred CCCCccCC-------------------cCc-ccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-h-HHcc
Confidence 88888773 222 222 78888888888888653333778888888888888754 3 6777
Q ss_pred CCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCCC
Q 045967 438 LVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNSL 476 (929)
Q Consensus 438 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 476 (929)
+++|+.|++++|++++. ..+..+++|+.|++++|++
T Consensus 149 l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEE
T ss_pred CCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcc
Confidence 88888888888888776 4577788888888888754
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=7.9e-15 Score=149.12 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=105.8
Q ss_pred CCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCC
Q 045967 348 VNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRL 427 (929)
Q Consensus 348 ~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l 427 (929)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++.......+++|++|++++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-------------------~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-------------------DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV 100 (197)
T ss_dssp HHHHTCCEEEEESSCCS-------------------CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTC
T ss_pred hhcCCccEEeccCCCcc-------------------ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCcc
Confidence 34555666666666554 344 5778889999999999776443333788899999999998
Q ss_pred CCCCccccccCCCCcEEeccCCCCcCccchhhhhccCcccEEEccCCC-CCCCccccccCCCCCcceeeccccCCCCCCh
Q 045967 428 QGSIPSSIFELVNLIDLQLDSNNFSGIAEPYMFAKLIKLKYLYISHNS-LSLGTTFKIDIPFPKFSYLSLFACNISAFPS 506 (929)
Q Consensus 428 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~ 506 (929)
++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++|+ +. .+|
T Consensus 101 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~-------------------------~~~- 153 (197)
T 4ezg_A 101 TSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAIT-------------------------DIM- 153 (197)
T ss_dssp BGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCC-------------------------CCG-
T ss_pred CcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCcc-------------------------ccH-
Confidence 87778888889999999999999887655 678888888888888884 32 233
Q ss_pred hhhcccccceeccCCCcCCCCCchhhhccCCCCccEEecccccccc
Q 045967 507 FLRTQDKLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITK 552 (929)
Q Consensus 507 ~l~~~~~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~ 552 (929)
.+..+++|++|++++|.+.+.. .+ ..+++|+.|++++|++.+
T Consensus 154 ~l~~l~~L~~L~l~~n~i~~~~--~l--~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 154 PLKTLPELKSLNIQFDGVHDYR--GI--EDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGGGCSSCCEEECTTBCCCCCT--TG--GGCSSCCEEEECBC----
T ss_pred hhcCCCCCCEEECCCCCCcChH--Hh--ccCCCCCEEEeeCcccCC
Confidence 3555566666666666665422 23 455666666666666543
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=1.3e-15 Score=185.58 Aligned_cols=182 Identities=21% Similarity=0.270 Sum_probs=79.5
Q ss_pred chhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccC
Q 045967 584 IHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGN 663 (929)
Q Consensus 584 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 663 (929)
+..+..++.|+.|+|++|.+. .+|..+..+..+ +.|+|++|.++ .+|..+.++++|++|+|++|+|+ .+|..++.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L--~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL--TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSC--SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC--CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 344555556666666666665 455555555542 35666666665 44555666666666666666666 33556666
Q ss_pred CCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhc
Q 045967 664 LPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKIL 743 (929)
Q Consensus 664 l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 743 (929)
+++|++|+|++|.|+ .+|.. |.. +
T Consensus 292 l~~L~~L~L~~N~l~---------------~lp~~-~~~----------------------------------------l 315 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT---------------TLPWE-FGN----------------------------------------L 315 (727)
T ss_dssp GTTCSEEECCSSCCC---------------CCCSS-TTS----------------------------------------C
T ss_pred CCCCCEEECCCCCCC---------------ccChh-hhc----------------------------------------C
Confidence 666665555554443 33422 111 4
Q ss_pred ccccEeeccccccCcccchhhccccc-cceeeccCccCCCCCCccccCcCCCCEeeCCCC--------cCCCCCchhhcc
Q 045967 744 TVFTTIDFSSNGFDGEISQVIGKLHS-LRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSN--------NLAGKIPKQLAS 814 (929)
Q Consensus 744 ~~L~~LdLs~N~l~~~ip~~l~~L~~-L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N--------~ls~~ip~~l~~ 814 (929)
++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++| .+.+..+..+.+
T Consensus 316 ~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~ 389 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD 389 (727)
T ss_dssp TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred CCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence 45566666666666666665554322 123566666666666543 334455555 344444445555
Q ss_pred CCCCCEEECccCcCccCC
Q 045967 815 LTSLSVLNISHNRLDGPI 832 (929)
Q Consensus 815 L~~L~~L~Ls~N~l~g~i 832 (929)
+..+....+++|-+.+..
T Consensus 390 l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 390 LAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp ------------CCCGGG
T ss_pred ccccceeeeecccccccc
Confidence 666666777777775443
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=2.3e-14 Score=145.01 Aligned_cols=135 Identities=20% Similarity=0.272 Sum_probs=111.7
Q ss_pred CCCcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCC
Q 045967 213 CSWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQF 292 (929)
Q Consensus 213 C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l 292 (929)
|.|+.+.|....+ ..+|..+. .++++|+|++|.+.+..+. ..++++++|++|+|++|.+
T Consensus 8 C~~~~l~~s~~~l----~~ip~~~~--~~l~~L~l~~n~i~~~~~~---------------~~~~~l~~L~~L~Ls~N~l 66 (192)
T 1w8a_A 8 CEGTTVDCTGRGL----KEIPRDIP--LHTTELLLNDNELGRISSD---------------GLFGRLPHLVKLELKRNQL 66 (192)
T ss_dssp EETTEEECTTSCC----SSCCSCCC--TTCSEEECCSCCCCSBCCS---------------CSGGGCTTCCEEECCSSCC
T ss_pred ECCCEEEcCCCCc----CcCccCCC--CCCCEEECCCCcCCccCCc---------------cccccCCCCCEEECCCCCC
Confidence 7899999986543 12344333 3899999999988554332 1266779999999999999
Q ss_pred CCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCC
Q 045967 293 VGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVP 368 (929)
Q Consensus 293 ~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p 368 (929)
++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|. +..+++|++|++++|.+++..+
T Consensus 67 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 998899999999999999999999988888899999999999999999988776 8899999999999999987654
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=3.5e-14 Score=140.24 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=51.1
Q ss_pred CCCCcEEECCCCCCC-CCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEE
Q 045967 279 LKLLGRLMLGYSQFV-GPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFF 356 (929)
Q Consensus 279 l~~L~~L~Ls~n~l~-~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L 356 (929)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|. +.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356666666666665 45666666666666666666666644 5566666666666666666654444 3345556555
Q ss_pred eCCCCcCC
Q 045967 357 DLSNNQLA 364 (929)
Q Consensus 357 ~Ls~n~l~ 364 (929)
++++|.++
T Consensus 101 ~Ls~N~l~ 108 (168)
T 2ell_A 101 NLSGNKLK 108 (168)
T ss_dssp ECBSSSCC
T ss_pred eccCCccC
Confidence 55555554
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=4.4e-14 Score=139.56 Aligned_cols=133 Identities=21% Similarity=0.209 Sum_probs=113.0
Q ss_pred CCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCC
Q 045967 239 MTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSS 318 (929)
Q Consensus 239 l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~ 318 (929)
.++|+.|++++|.+. .+.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 23 ~~~L~~L~l~~n~l~---------------~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 85 (168)
T 2ell_A 23 PAAVRELVLDNCKSN---------------DGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG 85 (168)
T ss_dssp TTSCSEEECCSCBCB---------------TTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS
T ss_pred cccCCEEECCCCCCC---------------hhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch
Confidence 468999999999874 134555667789999999999999875 789999999999999999998
Q ss_pred CCccccCCCCCCCEEEccCCcCCCCC--CCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCc----cccCC
Q 045967 319 HIPSSLSNLVQLTCLDLSGNSFVGEI--PDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPS----WLFSL 392 (929)
Q Consensus 319 ~~p~~l~~L~~L~~L~Ls~N~l~~~~--p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~----~l~~l 392 (929)
.+|..+.++++|++|++++|.+++.. +.+..+++|++|++++|.+++ +|. .+..+
T Consensus 86 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-------------------~~~~~~~~~~~l 146 (168)
T 2ell_A 86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-------------------LNDYRESVFKLL 146 (168)
T ss_dssp CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-------------------STTHHHHHHTTC
T ss_pred HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-------------------hHHHHHHHHHhC
Confidence 88888888999999999999999754 458899999999999988872 333 68889
Q ss_pred CCCcEEEcccccCCC
Q 045967 393 PLLEYVRLSDNQLSG 407 (929)
Q Consensus 393 ~~L~~L~Ls~N~l~~ 407 (929)
++|++|++++|.+..
T Consensus 147 ~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 147 PQLTYLDGYDREDQE 161 (168)
T ss_dssp SSCCEETTEETTSCB
T ss_pred ccCcEecCCCCChhh
Confidence 999999999998763
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=4.7e-14 Score=142.82 Aligned_cols=91 Identities=25% Similarity=0.265 Sum_probs=81.3
Q ss_pred cccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEE
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~ 822 (929)
+++|+.|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 56678888888888887788899999999999999999988888999999999999999999977777899999999999
Q ss_pred CccCcCccCCC
Q 045967 823 ISHNRLDGPIP 833 (929)
Q Consensus 823 Ls~N~l~g~iP 833 (929)
+++|++.+.+.
T Consensus 133 L~~N~~~C~c~ 143 (193)
T 2wfh_A 133 IGANPLYCDCN 143 (193)
T ss_dssp CCSSCEECSGG
T ss_pred eCCCCeecCCc
Confidence 99999987665
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=1.9e-13 Score=136.19 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=108.0
Q ss_pred CCCcccccCCCCcccccCchhhhhcCCCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCC
Q 045967 213 CSWDGLTCDMATVSLETPVFQALVQNMTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQF 292 (929)
Q Consensus 213 C~W~Gv~C~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l 292 (929)
|+|++|.|+..++. .+|..+ .++|++|++++|.+.+..+ ..++++++|++|++++|.+
T Consensus 7 C~~~~l~~~~~~l~----~~p~~~--~~~l~~L~l~~n~l~~~~~----------------~~~~~l~~L~~L~l~~n~l 64 (177)
T 2o6r_A 7 CSGTEIRCNSKGLT----SVPTGI--PSSATRLELESNKLQSLPH----------------GVFDKLTQLTKLSLSQNQI 64 (177)
T ss_dssp EETTEEECCSSCCS----SCCTTC--CTTCSEEECCSSCCCCCCT----------------TTTTTCTTCSEEECCSSCC
T ss_pred eCCCEEEecCCCCc----cCCCCC--CCCCcEEEeCCCcccEeCH----------------HHhcCcccccEEECCCCcc
Confidence 78999999865432 223222 3689999999998854322 3457779999999999999
Q ss_pred CCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCCCCC
Q 045967 293 VGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAGPVP 368 (929)
Q Consensus 293 ~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~~~p 368 (929)
++..+..|+++++|++|++++|++++..+..+.++++|++|++++|.+++..+. +.++++|++|++++|.+.+..|
T Consensus 65 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 65 QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred eEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 876667789999999999999999987777789999999999999999977666 6789999999999998886543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=5.4e-14 Score=135.88 Aligned_cols=128 Identities=21% Similarity=0.248 Sum_probs=97.0
Q ss_pred CCCcEEEccCCcCC-CCCcccccCCCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCccccc
Q 045967 641 TKLEVLDIGNNKIN-DVFPYWLGNLPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYL 719 (929)
Q Consensus 641 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l 719 (929)
++|+.|++++|.++ +.+|..+..+++|++|++++|++++ ++ .+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~--~~------------------- 60 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---------------IA--NL------------------- 60 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC---------------CT--TC-------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC---------------ch--hh-------------------
Confidence 56788888888887 5667777778888777777666541 10 00
Q ss_pred CccccccceEEEecCchhhHhhhcccccEeeccccccCcccchhhccccccceeeccCccCCCC-CCccccCcCCCCEee
Q 045967 720 GEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGK-IPSSLGNLAKLESLD 798 (929)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~-ip~~l~~L~~L~~Ld 798 (929)
..++.|+.|++++|.+++.+|..++.+++|++|++++|.+++. .|..++.+++|++|+
T Consensus 61 ---------------------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 61 ---------------------PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp ---------------------CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred ---------------------hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 0156778888888888877888888888899999999988863 347788889999999
Q ss_pred CCCCcCCCCCc---hhhccCCCCCEEECcc
Q 045967 799 LSSNNLAGKIP---KQLASLTSLSVLNISH 825 (929)
Q Consensus 799 Ls~N~ls~~ip---~~l~~L~~L~~L~Ls~ 825 (929)
+++|.+++..+ ..+..+++|+.||+++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999887665 5788888999988864
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=8.6e-14 Score=134.45 Aligned_cols=132 Identities=22% Similarity=0.184 Sum_probs=106.3
Q ss_pred CCCceEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCC
Q 045967 239 MTKLQVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSS 318 (929)
Q Consensus 239 l~~L~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~ 318 (929)
.++|+.|++++|.++ .+.+|..++.+++|++|++++|.+++. ..++++++|++|++++|.+++
T Consensus 16 ~~~l~~L~l~~n~l~---------------~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~ 78 (149)
T 2je0_A 16 PSDVKELVLDNSRSN---------------EGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG 78 (149)
T ss_dssp GGGCSEEECTTCBCB---------------TTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS
T ss_pred CccCeEEEccCCcCC---------------hhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc
Confidence 357999999999874 134556677889999999999999875 778999999999999999998
Q ss_pred CCccccCCCCCCCEEEccCCcCCCCC--CCCCCCCCCCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCccccCCCCCc
Q 045967 319 HIPSSLSNLVQLTCLDLSGNSFVGEI--PDIVNLTQVSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPSWLFSLPLLE 396 (929)
Q Consensus 319 ~~p~~l~~L~~L~~L~Ls~N~l~~~~--p~l~~L~~L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 396 (929)
.+|..+.++++|++|++++|.+++.. ..+.++++|++|++++|.+++..+ .....+..+++|+
T Consensus 79 ~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------------~~~~~~~~l~~L~ 143 (149)
T 2je0_A 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND---------------YRENVFKLLPQLT 143 (149)
T ss_dssp CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT---------------HHHHHHHHCTTCC
T ss_pred hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH---------------HHHHHHHHCCCcc
Confidence 78888888999999999999998743 448889999999999988773211 0013678899999
Q ss_pred EEEccc
Q 045967 397 YVRLSD 402 (929)
Q Consensus 397 ~L~Ls~ 402 (929)
+|++++
T Consensus 144 ~L~l~d 149 (149)
T 2je0_A 144 YLDGYD 149 (149)
T ss_dssp EETTBC
T ss_pred cccCCC
Confidence 998763
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=1.5e-13 Score=136.89 Aligned_cols=92 Identities=27% Similarity=0.342 Sum_probs=83.8
Q ss_pred cccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEE
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~ 822 (929)
+++|+.|++++|++++..+..|+++++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 57889999999999987778889999999999999999988888889999999999999999987777788999999999
Q ss_pred CccCcCccCCCC
Q 045967 823 ISHNRLDGPIPQ 834 (929)
Q Consensus 823 Ls~N~l~g~iP~ 834 (929)
+++|++.|.+|.
T Consensus 131 l~~N~~~~~~~~ 142 (177)
T 2o6r_A 131 LHTNPWDCSCPR 142 (177)
T ss_dssp CCSSCBCCCHHH
T ss_pred ecCCCeeccCcc
Confidence 999999998773
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.43 E-value=4.5e-13 Score=147.79 Aligned_cols=86 Identities=13% Similarity=0.170 Sum_probs=70.2
Q ss_pred hcccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCC-EeeCCCCcCCCCCchhhccCCCCCE
Q 045967 742 ILTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLE-SLDLSSNNLAGKIPKQLASLTSLSV 820 (929)
Q Consensus 742 ~l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~-~LdLs~N~ls~~ip~~l~~L~~L~~ 820 (929)
.+++|+.++|++|+++...+..|.++.+|+.|+|.+| ++...+..|.++++|+ .+++.+ .++...+.+|.++++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3678888888888888666777888888888888887 7766677788888888 888888 777666788888888888
Q ss_pred EECccCcCc
Q 045967 821 LNISHNRLD 829 (929)
Q Consensus 821 L~Ls~N~l~ 829 (929)
+++++|+++
T Consensus 302 l~l~~n~i~ 310 (329)
T 3sb4_A 302 VLATGDKIT 310 (329)
T ss_dssp EEECSSCCC
T ss_pred EEeCCCccC
Confidence 888888875
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=6e-13 Score=131.68 Aligned_cols=92 Identities=22% Similarity=0.234 Sum_probs=85.4
Q ss_pred cccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEE
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~ 822 (929)
.+.++.|+|++|++++..|..|+++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 35788999999999999999999999999999999999988888889999999999999999988888899999999999
Q ss_pred CccCcCccCCCC
Q 045967 823 ISHNRLDGPIPQ 834 (929)
Q Consensus 823 Ls~N~l~g~iP~ 834 (929)
+++|++++.++.
T Consensus 109 L~~N~~~c~c~~ 120 (170)
T 3g39_A 109 LLNNPWDCACSD 120 (170)
T ss_dssp CCSSCBCTTBGG
T ss_pred eCCCCCCCCchh
Confidence 999999987764
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=2e-13 Score=150.67 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=42.2
Q ss_pred cccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCC-EEECcc
Q 045967 766 KLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLS-VLNISH 825 (929)
Q Consensus 766 ~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~-~L~Ls~ 825 (929)
.+++|+.|+|++|+++...+..|.++++|+.|+|++| ++...+.+|.++++|+ .+++.+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 3677777777777777555566777777777777776 6656666777777777 777766
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=3.8e-12 Score=128.68 Aligned_cols=127 Identities=22% Similarity=0.270 Sum_probs=100.9
Q ss_pred cEEecccccccccccCCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCCccccccCcccccc
Q 045967 541 SYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSV 620 (929)
Q Consensus 541 ~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~ 620 (929)
+.+++++|.++.++....++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+..+ +
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~---------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L--~ 81 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT---------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL--L 81 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC---------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC--C
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc---------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC--C
Confidence 34555555555555444457778888888775 456778888899999999999987777778888774 5
Q ss_pred eeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeeccccccc
Q 045967 621 SLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNKLR 678 (929)
Q Consensus 621 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 678 (929)
.|++++|.+++..+..|.++++|++|+|++|+++...+..|..+++|+.|++++|.+.
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8999999999888888999999999999999999887778888999988888888765
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=3.5e-14 Score=144.43 Aligned_cols=161 Identities=24% Similarity=0.300 Sum_probs=112.8
Q ss_pred hhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCC
Q 045967 587 ICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPE 666 (929)
Q Consensus 587 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 666 (929)
+.....++.++++.+.++|.+|.. + .+|..+..+++|++|++++|.+++. | .+..+++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l-------------------~-~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~ 71 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPI-------------------E-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMEN 71 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTC-------------------C-CCHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTT
T ss_pred HHhcccccCcchheeEeccccCcH-------------------h-hhhHHHhcCCCCCEEECCCCCCccc-c-ccccCCC
Confidence 444556666666666666544420 0 1234677788888888888888874 5 7777888
Q ss_pred CceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccc
Q 045967 667 LRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVF 746 (929)
Q Consensus 667 L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L 746 (929)
|++|++++|+++ .+|... . .+++|
T Consensus 72 L~~L~l~~n~l~---------------~l~~~~-~----------------------------------------~~~~L 95 (198)
T 1ds9_A 72 LRILSLGRNLIK---------------KIENLD-A----------------------------------------VADTL 95 (198)
T ss_dssp CCEEEEEEEEEC---------------SCSSHH-H----------------------------------------HHHHC
T ss_pred CCEEECCCCCcc---------------cccchh-h----------------------------------------cCCcC
Confidence 888877777664 344211 1 14677
Q ss_pred cEeeccccccCcccchhhccccccceeeccCccCCCCCC-ccccCcCCCCEeeCCCCcCCCCCchh----------hccC
Q 045967 747 TTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIP-SSLGNLAKLESLDLSSNNLAGKIPKQ----------LASL 815 (929)
Q Consensus 747 ~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip-~~l~~L~~L~~LdLs~N~ls~~ip~~----------l~~L 815 (929)
+.|++++|++++ +| .++.+++|++|+|++|++++..+ ..+..+++|++|++++|.+++.+|.. +..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 888888888886 44 58888888999999988885332 46788888889999888888766643 7788
Q ss_pred CCCCEEECccCcCc
Q 045967 816 TSLSVLNISHNRLD 829 (929)
Q Consensus 816 ~~L~~L~Ls~N~l~ 829 (929)
++|+.|| +|+++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 8888887 56654
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=1.8e-12 Score=128.69 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=83.4
Q ss_pred cccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEE
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~ 822 (929)
.+.|+.|+|++|++++..|..|+++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 35789999999999999999999999999999999999987777789999999999999999987777799999999999
Q ss_pred CccCcCccCCC
Q 045967 823 ISHNRLDGPIP 833 (929)
Q Consensus 823 Ls~N~l~g~iP 833 (929)
+++|++.+..+
T Consensus 112 L~~N~~~c~~~ 122 (174)
T 2r9u_A 112 LYNNPWDCECR 122 (174)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCcccccc
Confidence 99999987655
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.4e-12 Score=129.85 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=37.7
Q ss_pred CCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCC--CCCCCCCCCEEeC
Q 045967 281 LLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIP--DIVNLTQVSFFDL 358 (929)
Q Consensus 281 ~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p--~l~~L~~L~~L~L 358 (929)
+|++|++++|.+++. ..++.+++|++|++++|.+++..+..+..+++|++|++++|.+....+ .+.++++|++|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 455555555555442 344455555555555555543322333445555555555555433222 2444444444444
Q ss_pred CCCcC
Q 045967 359 SNNQL 363 (929)
Q Consensus 359 s~n~l 363 (929)
++|.+
T Consensus 121 ~~N~i 125 (176)
T 1a9n_A 121 LRNPV 125 (176)
T ss_dssp CSSGG
T ss_pred cCCCC
Confidence 44444
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=2.5e-12 Score=127.95 Aligned_cols=133 Identities=18% Similarity=0.156 Sum_probs=81.3
Q ss_pred ccCCCCCCcEEECCCCCCCCCCccccCCCC-CCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCC
Q 045967 275 SIGNLKLLGRLMLGYSQFVGPVPASLGNLT-QLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQ 352 (929)
Q Consensus 275 ~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~ 352 (929)
.+.++.+|++|++++|.++. +|. +..+. +|++|++++|.+++. ..+.++++|++|++++|.+++..+. +..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 34556777777777777764 444 33333 777777777777754 4666777777777777777655444 356666
Q ss_pred CCEEeCCCCcCCCCCCCCCcEEEcCCCCCCCCCCc--cccCCCCCcEEEcccccCCCCCCCCCCCCCcEEEecCCCCCCC
Q 045967 353 VSFFDLSNNQLAGPVPSHEMLIRLNNNSLSGTIPS--WLFSLPLLEYVRLSDNQLSGHIDEFPSKSLQNIYLSNNRLQGS 430 (929)
Q Consensus 353 L~~L~Ls~n~l~~~~p~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 430 (929)
|++|++++|.++ .+|. .+..+++|++|++++|.+ + .
T Consensus 90 L~~L~L~~N~i~-------------------~~~~~~~l~~l~~L~~L~l~~N~i----------------------~-~ 127 (176)
T 1a9n_A 90 LTELILTNNSLV-------------------ELGDLDPLASLKSLTYLCILRNPV----------------------T-N 127 (176)
T ss_dssp CCEEECCSCCCC-------------------CGGGGGGGGGCTTCCEEECCSSGG----------------------G-G
T ss_pred CCEEECCCCcCC-------------------cchhhHhhhcCCCCCEEEecCCCC----------------------C-C
Confidence 666666666554 2222 444555555555555544 3 3
Q ss_pred Ccc----ccccCCCCcEEeccCCCCcC
Q 045967 431 IPS----SIFELVNLIDLQLDSNNFSG 453 (929)
Q Consensus 431 ~p~----~l~~l~~L~~L~Ls~N~l~~ 453 (929)
+|. .+..+++|+.|++++|....
T Consensus 128 ~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 128 KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 344 26677777777777776554
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=2.1e-14 Score=146.14 Aligned_cols=84 Identities=25% Similarity=0.234 Sum_probs=44.2
Q ss_pred CCCCCCcEEECCCCCCCCCCcc------ccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCC
Q 045967 277 GNLKLLGRLMLGYSQFVGPVPA------SLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVN 349 (929)
Q Consensus 277 ~~l~~L~~L~Ls~n~l~~~lp~------~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~ 349 (929)
.....++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|.++. +|. +..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhc
Confidence 3445556666666666555554 55556666666666666554 34 55555555555555555552 222 333
Q ss_pred CCCCCEEeCCCCcC
Q 045967 350 LTQVSFFDLSNNQL 363 (929)
Q Consensus 350 L~~L~~L~Ls~n~l 363 (929)
+++|++|++++|++
T Consensus 92 ~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 92 ADTLEELWISYNQI 105 (198)
T ss_dssp HHHCSEEEEEEEEC
T ss_pred CCcCCEEECcCCcC
Confidence 34444444444443
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.24 E-value=6.6e-11 Score=133.58 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=41.1
Q ss_pred hhhhccCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCC
Q 045967 585 HSICDIIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNL 664 (929)
Q Consensus 585 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 664 (929)
..|.+|.+|+.+++++|+++..-...|. ...+ ..+.+..+ +..+...+|.+|++|+.+++.+| ++.+...+|.+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L--~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~- 247 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGI--EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE- 247 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTT-TCCC--SEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-
T ss_pred HHhhCcccCCeeecCCCcceEechhhEe-eccc--CEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-
Confidence 3455666666666666666522222222 2221 34455422 44444455666666666666553 44444445554
Q ss_pred CCCceeec
Q 045967 665 PELRVLVL 672 (929)
Q Consensus 665 ~~L~~L~L 672 (929)
.+|+.+.+
T Consensus 248 ~~L~~i~l 255 (401)
T 4fdw_A 248 SGITTVKL 255 (401)
T ss_dssp CCCSEEEE
T ss_pred CCccEEEe
Confidence 45555544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=5.4e-11 Score=117.55 Aligned_cols=87 Identities=28% Similarity=0.234 Sum_probs=79.2
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeC
Q 045967 280 KLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDL 358 (929)
Q Consensus 280 ~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~L 358 (929)
++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+. +.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 7899999999999998888999999999999999999987777889999999999999999987776 889999999999
Q ss_pred CCCcCCCC
Q 045967 359 SNNQLAGP 366 (929)
Q Consensus 359 s~n~l~~~ 366 (929)
++|.++..
T Consensus 110 ~~N~~~c~ 117 (170)
T 3g39_A 110 LNNPWDCA 117 (170)
T ss_dssp CSSCBCTT
T ss_pred CCCCCCCC
Confidence 99988744
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.21 E-value=6.7e-11 Score=117.33 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=90.3
Q ss_pred eEEEcCCCCCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEeccCccCCCCCcc
Q 045967 243 QVLSLASLEMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPS 322 (929)
Q Consensus 243 ~~L~Ls~~~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~ 322 (929)
+.++++++.+ +.+|..+. ++|++|+|++|.+++..|..|+++++|++|+|++|++++..+.
T Consensus 15 ~~l~~~~n~l-----------------~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~ 75 (174)
T 2r9u_A 15 TLVNCQNIRL-----------------ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG 75 (174)
T ss_dssp SEEECCSSCC-----------------SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cEEEeCCCCC-----------------CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh
Confidence 4788888876 23444443 7899999999999998899999999999999999999987666
Q ss_pred ccCCCCCCCEEEccCCcCCCCCCC-CCCCCCCCEEeCCCCcCCC
Q 045967 323 SLSNLVQLTCLDLSGNSFVGEIPD-IVNLTQVSFFDLSNNQLAG 365 (929)
Q Consensus 323 ~l~~L~~L~~L~Ls~N~l~~~~p~-l~~L~~L~~L~Ls~n~l~~ 365 (929)
.|.++++|++|+|++|++++..+. +.++++|++|++++|.+..
T Consensus 76 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 789999999999999999987776 8899999999999998874
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.16 E-value=6.9e-10 Score=125.40 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=27.9
Q ss_pred CcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeecccc
Q 045967 633 NPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSN 675 (929)
Q Consensus 633 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 675 (929)
...+|.+|.+|+.+++..+ ++.+...+|.++++|+.+++..+
T Consensus 335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 3456777777777777655 55555667777777777766544
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=6.7e-12 Score=140.35 Aligned_cols=165 Identities=18% Similarity=0.190 Sum_probs=102.7
Q ss_pred CCCcEEEccCCcCCCCCcccccC-----CCCCceeeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCc
Q 045967 641 TKLEVLDIGNNKINDVFPYWLGN-----LPELRVLVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGK 715 (929)
Q Consensus 641 ~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~ 715 (929)
++|+.|++++|.++......+.. .++|+.|+|++|.++. .-...+...+.+|+.|++++|.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~--------------~~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP--------------AGLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH--------------HHHHHTHHHHHTEEEEECCSSC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH--------------HHHHHHHHHHHhccHhhcCCCC
Confidence 46777777777776543333221 2456665555555432 1112223334445555555554
Q ss_pred ccccCccccccceEEEecCchhhHhhhcccccEeeccccccCcc----cchhhccccccceeeccCccCCCC----CCcc
Q 045967 716 LRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLTHNHFTGK----IPSS 787 (929)
Q Consensus 716 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----ip~~l~~L~~L~~L~Ls~N~l~~~----ip~~ 787 (929)
+...+...+.. ......+.|+.|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..
T Consensus 138 l~~~~~~~L~~-----------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 138 LGPEACKDLRD-----------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp CCHHHHHHHHH-----------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-----------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 32211100000 0001146789999999998753 455567889999999999998753 3566
Q ss_pred ccCcCCCCEeeCCCCcCCCC----CchhhccCCCCCEEECccCcCcc
Q 045967 788 LGNLAKLESLDLSSNNLAGK----IPKQLASLTSLSVLNISHNRLDG 830 (929)
Q Consensus 788 l~~L~~L~~LdLs~N~ls~~----ip~~l~~L~~L~~L~Ls~N~l~g 830 (929)
+...++|++|||++|.|+.. +...+...+.|++|||++|+|+.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 77788999999999999864 34455667899999999999864
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.8e-10 Score=127.81 Aligned_cols=92 Identities=20% Similarity=0.152 Sum_probs=71.8
Q ss_pred cccccCCCCCCcEEECCC-CCCCCCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCCCCCC
Q 045967 272 LANSIGNLKLLGRLMLGY-SQFVGPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPDIVNL 350 (929)
Q Consensus 272 ip~~l~~l~~L~~L~Ls~-n~l~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~l~~L 350 (929)
+|. +..+++|++|+|++ |.+.+..+..|+++++|++|+|++|++++..|..|.++++|++|+|++|++++.++.+...
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 555 67778888888885 8888766778888888888888888888888888888888888888888888766663333
Q ss_pred CCCCEEeCCCCcCC
Q 045967 351 TQVSFFDLSNNQLA 364 (929)
Q Consensus 351 ~~L~~L~Ls~n~l~ 364 (929)
..|+.|++.+|.+.
T Consensus 103 ~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 103 LSLQELVLSGNPLH 116 (347)
T ss_dssp CCCCEEECCSSCCC
T ss_pred CCceEEEeeCCCcc
Confidence 33888888888776
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.11 E-value=1e-09 Score=123.87 Aligned_cols=243 Identities=10% Similarity=0.127 Sum_probs=143.0
Q ss_pred ccceeccCCCcCCCCCchhhhccCCCCccEEeccccccccccc---CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhc
Q 045967 513 KLFYLDLSESKIDGQIPRWISKIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICD 589 (929)
Q Consensus 513 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~L~~L~Ls~N~l~~~~~---~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~ 589 (929)
+|+.+++.++ +.......| .+ .+|+.+.+.. .++.+.. ..+++|+.+++.+|.++ .++.....
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF--~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~---------~I~~~aF~ 201 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAF--FN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT---------KLPASTFV 201 (401)
T ss_dssp CCSEEECCTT-CCEECTTTT--TT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS---------EECTTTTT
T ss_pred CccEEEeCCC-ccEECHHhc--CC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce---------EechhhEe
Confidence 3555555443 332223333 22 2455555553 3444433 23345666666655554 22222222
Q ss_pred cCCCCEEeCCCCcCcCCCccccccCcccccceeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCce
Q 045967 590 IIALDVLDLSNNRLSGTIPECIGNFSPWLSVSLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRV 669 (929)
Q Consensus 590 l~~L~~L~Ls~N~l~~~ip~~l~~l~~ll~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 669 (929)
+.+|+.+.+..+ ++..-..+|.++..+ +.+++..+ +..+...+|.+ .+|+.+++ .+.++.+...+|.++++|+.
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L--~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQL--KTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAE 275 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTC--CCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCC--CEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCE
Confidence 456666666533 443334445555543 35555543 44444566776 68899988 45577777788888999998
Q ss_pred eeccccccccccceeeCCCCcCcccCCHHHHhhhhcccccccCCCcccccCccccccceEEEecCchhhHhhhcccccEe
Q 045967 670 LVLRSNKLRGSLRILDLSINNFSGYLPARFFEKLNAMRNVGADEGKLRYLGEEYYQDSVVVTLKGTEIELQKILTVFTTI 749 (929)
Q Consensus 670 L~Ls~N~l~~~L~~LdLs~N~l~g~ip~~~~~~l~~L~~L~ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 749 (929)
+++.+|.+. .+.. ..++...|.+ +++|+.+
T Consensus 276 l~l~~~~~~---------~~~~-~~I~~~aF~~----------------------------------------c~~L~~l 305 (401)
T 4fdw_A 276 VTTYGSTFN---------DDPE-AMIHPYCLEG----------------------------------------CPKLARF 305 (401)
T ss_dssp EEEESSCCC---------CCTT-CEECTTTTTT----------------------------------------CTTCCEE
T ss_pred EEeCCcccc---------CCcc-cEECHHHhhC----------------------------------------CccCCeE
Confidence 888777543 1111 1244444444 4455556
Q ss_pred eccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCC-CCCEEECccCcC
Q 045967 750 DFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLT-SLSVLNISHNRL 828 (929)
Q Consensus 750 dLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~-~L~~L~Ls~N~l 828 (929)
+|. +.++..-...|.++.+|+.++|..| ++..-+..|.++ +|+.+++++|.+....+..|.+++ .++.+++..|.+
T Consensus 306 ~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 306 EIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 665 3355455667778888888888554 665666778888 888888888888776677777774 678888777654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=4.4e-10 Score=124.62 Aligned_cols=90 Identities=21% Similarity=0.186 Sum_probs=79.4
Q ss_pred cccccEeeccc-cccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEE
Q 045967 743 LTVFTTIDFSS-NGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVL 821 (929)
Q Consensus 743 l~~L~~LdLs~-N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L 821 (929)
+++|+.|+|++ |+|++..+..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 56788999996 999988888999999999999999999999999999999999999999999977777777766 9999
Q ss_pred ECccCcCccCCC
Q 045967 822 NISHNRLDGPIP 833 (929)
Q Consensus 822 ~Ls~N~l~g~iP 833 (929)
++++|++.+.+.
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 999999987654
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.01 E-value=8.1e-09 Score=116.58 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=32.7
Q ss_pred cccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEe
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESL 797 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L 797 (929)
+.+|+.+++..+ ++..-..+|.++.+|+.+++..+ ++ .+...|.++++|+.+
T Consensus 342 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 342 CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 556666666655 55445567777888888887655 22 334567777776653
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.97 E-value=3.9e-11 Score=134.15 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=27.5
Q ss_pred CCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCCcCcCCC
Q 045967 559 KNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNNRLSGTI 607 (929)
Q Consensus 559 ~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 607 (929)
++|+.|++++|.+++... ..+...+...++|++|+|++|.+++.-
T Consensus 211 ~~L~~L~Ls~N~i~~~g~----~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAA----LALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp SCCCEEECCSSCCCHHHH----HHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred CCcCeEECCCCCCCHHHH----HHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 456666666666651100 134445556778888888888877443
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.74 E-value=2.6e-07 Score=104.19 Aligned_cols=81 Identities=12% Similarity=0.203 Sum_probs=39.4
Q ss_pred cccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEE
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLN 822 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~ 822 (929)
+.+|+.++|..+ ++..-..+|.++.+|+.+.|..+ ++..-...|.++++|+.+++.+|.... .++.....|+.+.
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP 384 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence 344555555432 33333455666677777776543 443444566677777777776664431 3455556666666
Q ss_pred CccCcC
Q 045967 823 ISHNRL 828 (929)
Q Consensus 823 Ls~N~l 828 (929)
+..|.+
T Consensus 385 i~~~~~ 390 (394)
T 4gt6_A 385 VAPGSI 390 (394)
T ss_dssp ------
T ss_pred eCCCCE
Confidence 655443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.64 E-value=1.6e-06 Score=97.54 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=48.2
Q ss_pred ccCCCC-CCcEEECCCCCCCCCCccccCCCCCCCEEeccCcc---CCCCCccccCCCCCCCEEEccCCcCCCCCCC-CCC
Q 045967 275 SIGNLK-LLGRLMLGYSQFVGPVPASLGNLTQLTLLHLMHNN---FSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-IVN 349 (929)
Q Consensus 275 ~l~~l~-~L~~L~Ls~n~l~~~lp~~~~~l~~L~~L~Ls~n~---l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l~~ 349 (929)
++.+++ .|+.+.+..+ ++..-..+|.+|++|+.+.+..|. ++..-..+|.++.+|+.+.+..+ ++..... +..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 345553 4777777643 444345677788888888877653 44333456667777776666544 2211111 556
Q ss_pred CCCCCEEeCCC
Q 045967 350 LTQVSFFDLSN 360 (929)
Q Consensus 350 L~~L~~L~Ls~ 360 (929)
+.+|+.+.+..
T Consensus 136 c~~L~~i~lp~ 146 (394)
T 4gt6_A 136 CEELDTVTIPE 146 (394)
T ss_dssp CTTCCEEECCT
T ss_pred hcccccccccc
Confidence 66666666543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=1.1e-07 Score=105.41 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=54.1
Q ss_pred CCCceEEEcCCCCCCC-CCCcccccccccccccccccccCCCCCCcEEECCCCCCC---------CCCccccCCCCCCCE
Q 045967 239 MTKLQVLSLASLEMST-VVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFV---------GPVPASLGNLTQLTL 308 (929)
Q Consensus 239 l~~L~~L~Ls~~~l~~-~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~---------~~lp~~~~~l~~L~~ 308 (929)
..+++.|.+......| .....+ ..+..++.++++|+.|.+...... +.+...+..+++|+.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~---------~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~ 176 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIA---------DGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNN 176 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHH---------HHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCE
T ss_pred chhcceEEEcccccCCCcHHHHH---------HHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcE
Confidence 4467888888765432 110111 123445667788888888664321 123334455566666
Q ss_pred EeccCccCCCCCccccCCCCCCCEEEccCCcCCCCCCC-C--CCCCCCCEEeCC
Q 045967 309 LHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFVGEIPD-I--VNLTQVSFFDLS 359 (929)
Q Consensus 309 L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-l--~~L~~L~~L~Ls 359 (929)
|+|++|.-. .++. +. +++|++|++..|.+...... + ..+++|++|+|+
T Consensus 177 L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 177 LKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp EEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred EEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 666665211 1222 22 55666666655554321111 1 245555555543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.41 E-value=4.4e-07 Score=100.47 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=78.8
Q ss_pred hhhhccCcccEEEccCCCCCCCccccccCCCCCcceeeccccCCCC-CChhhh--cccccceeccCC--CcCCCCC----
Q 045967 458 YMFAKLIKLKYLYISHNSLSLGTTFKIDIPFPKFSYLSLFACNISA-FPSFLR--TQDKLFYLDLSE--SKIDGQI---- 528 (929)
Q Consensus 458 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~l~--~~~~L~~L~Ls~--N~l~~~~---- 528 (929)
..+..+++|+.|++++|. .. .++. ...++|+.|++..|.+.. ....+. .+++|++|+|+. |...+..
T Consensus 166 ~ll~~~P~L~~L~L~g~~--~l-~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTN--NL-SIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHTCTTCCEEEEECCB--TC-BCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHhcCCCCcEEEEeCCC--Cc-eecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 345566777777776651 00 1111 235667777776666541 112232 567788887753 2211111
Q ss_pred -chhhhccCCCCccEEeccccccccccc------CCCCCccEEEcCCCCCCCCCCCCCCcccchhhhccCCCCEEeCCCC
Q 045967 529 -PRWISKIGKDSLSYLNLSHNFITKMKQ------ISWKNLGYLDLRSNLLQGPLPVPPSREIIHSICDIIALDVLDLSNN 601 (929)
Q Consensus 529 -p~~l~~~~~~~L~~L~Ls~N~l~~~~~------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~N 601 (929)
...+....+++|+.|++.+|.+.+... ..+++|+.|+++.|.+++... ..++..+..+++|+.|++++|
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~----~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA----RLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH----HHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH----HHHHhhcccCCcceEEECCCC
Confidence 111211246788888888887764321 346788888888888762100 123444556788888888888
Q ss_pred cCcCC
Q 045967 602 RLSGT 606 (929)
Q Consensus 602 ~l~~~ 606 (929)
.++..
T Consensus 318 ~i~d~ 322 (362)
T 2ra8_A 318 YLSDE 322 (362)
T ss_dssp BCCHH
T ss_pred cCCHH
Confidence 77644
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=2.2e-07 Score=97.70 Aligned_cols=66 Identities=26% Similarity=0.366 Sum_probs=30.8
Q ss_pred cccccceeeccCccCCC--CCCccccCcCCCCEeeCCCCcCCCCCchhhccCC--CCCEEECccCcCccCCC
Q 045967 766 KLHSLRLLNLTHNHFTG--KIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLT--SLSVLNISHNRLDGPIP 833 (929)
Q Consensus 766 ~L~~L~~L~Ls~N~l~~--~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~--~L~~L~Ls~N~l~g~iP 833 (929)
++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. .|++|++++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34445555555555544 2333444455555555555555433 2222222 45555555555555444
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.25 E-value=1.2e-07 Score=94.66 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=90.1
Q ss_pred hhhhhcCCCCceEEEcCCC-CCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCC----CccccCCCCCC
Q 045967 232 FQALVQNMTKLQVLSLASL-EMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGP----VPASLGNLTQL 306 (929)
Q Consensus 232 ~~~~l~~l~~L~~L~Ls~~-~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~----lp~~~~~l~~L 306 (929)
+...+...+.|++|+|++| .+..... ..+...+...++|++|+|++|.+... +...+...++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~------------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L 95 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTL------------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHH------------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHH------------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCc
Confidence 4556777889999999998 8754321 22345567788999999999998653 34556667889
Q ss_pred CEEeccCccCCCC----CccccCCCCCCCEEEc--cCCcCCCCCCC-----CCCCCCCCEEeCCCCcCC
Q 045967 307 TLLHLMHNNFSSH----IPSSLSNLVQLTCLDL--SGNSFVGEIPD-----IVNLTQVSFFDLSNNQLA 364 (929)
Q Consensus 307 ~~L~Ls~n~l~~~----~p~~l~~L~~L~~L~L--s~N~l~~~~p~-----l~~L~~L~~L~Ls~n~l~ 364 (929)
++|+|++|.+... +...+...++|++|+| ++|.+...-.. +...++|++|++++|.+.
T Consensus 96 ~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 9999999998854 4566777889999999 88888753211 556688999999888764
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.15 E-value=8.1e-05 Score=83.01 Aligned_cols=54 Identities=17% Similarity=0.397 Sum_probs=35.8
Q ss_pred eeeccCcccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeecccc
Q 045967 621 SLNLNNNELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSN 675 (929)
Q Consensus 621 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 675 (929)
.+.+.++.++.+...+|.+|.+|+.++|..+ ++.+...+|.++.+|+.+.+..+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 4555555555455567777888888888654 55565667778888887777543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.15 E-value=7.7e-07 Score=88.79 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=67.5
Q ss_pred cccccEeeccccccCcc----cchhhccccccceeeccCccCCCC----CCccccCcCCCCEeeC--CCCcCCCC----C
Q 045967 743 LTVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLTHNHFTGK----IPSSLGNLAKLESLDL--SSNNLAGK----I 808 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~----ip~~l~~L~~L~~L~Ls~N~l~~~----ip~~l~~L~~L~~LdL--s~N~ls~~----i 808 (929)
.+.|++|+|++|.+... +...+...++|++|+|++|.|.+. +...+...++|++|+| ++|.++.. +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 45788899999988753 345556668899999999998853 4566777889999999 88999864 3
Q ss_pred chhhccCCCCCEEECccCcCc
Q 045967 809 PKQLASLTSLSVLNISHNRLD 829 (929)
Q Consensus 809 p~~l~~L~~L~~L~Ls~N~l~ 829 (929)
...+...+.|++|++++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 345566689999999999874
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=9.6e-07 Score=92.79 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=67.7
Q ss_pred hhcccccEeeccccccCc--ccchhhccccccceeeccCccCCCCCCccccCcC--CCCEeeCCCCcCCCCCch------
Q 045967 741 KILTVFTTIDFSSNGFDG--EISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLA--KLESLDLSSNNLAGKIPK------ 810 (929)
Q Consensus 741 ~~l~~L~~LdLs~N~l~~--~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~--~L~~LdLs~N~ls~~ip~------ 810 (929)
..++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457899999999999998 5678888999999999999999975 3455555 999999999999987762
Q ss_pred -hhccCCCCCEEE
Q 045967 811 -QLASLTSLSVLN 822 (929)
Q Consensus 811 -~l~~L~~L~~L~ 822 (929)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 467889999886
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=6e-05 Score=84.08 Aligned_cols=72 Identities=8% Similarity=0.066 Sum_probs=50.5
Q ss_pred cccccEeeccccccCcccchhhccccccceeeccCccCCCCCCccccCcCCCCEeeCCCCcCCCCCchhhccCC
Q 045967 743 LTVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNHFTGKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLT 816 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~ 816 (929)
+.+|+.+++.++.++..-...|.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++..-..+|.+..
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 566777777777776555677888888888888654 55455567888888888888654 5544456666654
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=1e-05 Score=78.81 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=69.2
Q ss_pred ccccEeeccccccCcccchhhccccccceeeccCcc-CCCCCCccccCc----CCCCEeeCCCCc-CCCCCchhhccCCC
Q 045967 744 TVFTTIDFSSNGFDGEISQVIGKLHSLRLLNLTHNH-FTGKIPSSLGNL----AKLESLDLSSNN-LAGKIPKQLASLTS 817 (929)
Q Consensus 744 ~~L~~LdLs~N~l~~~ip~~l~~L~~L~~L~Ls~N~-l~~~ip~~l~~L----~~L~~LdLs~N~-ls~~ip~~l~~L~~ 817 (929)
..|+.||++++.++..--..+.++++|++|+|++|. +++.--..++.+ ++|++|+|++|. +|..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 368999999999988777778899999999999995 776544455554 479999999985 88766667888999
Q ss_pred CCEEECccCc
Q 045967 818 LSVLNISHNR 827 (929)
Q Consensus 818 L~~L~Ls~N~ 827 (929)
|++|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999886
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.29 E-value=0.00025 Score=69.08 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=29.1
Q ss_pred CCCcEEEccCCcCCCCCcccccCCCCCceeeccccc
Q 045967 641 TKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSNK 676 (929)
Q Consensus 641 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 676 (929)
..|+.||+++|.+++..-..+.++++|+.|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 468999999998887766667788888888888774
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.61 E-value=0.0013 Score=65.34 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=61.8
Q ss_pred cccccEeeccccccCcc----cchhhccccccceeeccCccCCCC----CCccccCcCCCCEeeCCCCc---CCC----C
Q 045967 743 LTVFTTIDFSSNGFDGE----ISQVIGKLHSLRLLNLTHNHFTGK----IPSSLGNLAKLESLDLSSNN---LAG----K 807 (929)
Q Consensus 743 l~~L~~LdLs~N~l~~~----ip~~l~~L~~L~~L~Ls~N~l~~~----ip~~l~~L~~L~~LdLs~N~---ls~----~ 807 (929)
-+.|+.|+|++|.+... +.+.+..-+.|++|+|++|.|.+. +-+.+..-+.|++|+|++|. +.. .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 35688899999988743 444555668899999999998753 33456666789999998763 332 2
Q ss_pred CchhhccCCCCCEEECccCcC
Q 045967 808 IPKQLASLTSLSVLNISHNRL 828 (929)
Q Consensus 808 ip~~l~~L~~L~~L~Ls~N~l 828 (929)
+-..+..-+.|+.|++++|.+
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 344566668899999988765
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.54 E-value=0.0037 Score=57.79 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=42.0
Q ss_pred eeeccCccCC-CCCCccccCcCCCCEeeCCCCcCCCCCchhhccCCCCCEEECccCcCccCC
Q 045967 772 LLNLTHNHFT-GKIPSSLGNLAKLESLDLSSNNLAGKIPKQLASLTSLSVLNISHNRLDGPI 832 (929)
Q Consensus 772 ~L~Ls~N~l~-~~ip~~l~~L~~L~~LdLs~N~ls~~ip~~l~~L~~L~~L~Ls~N~l~g~i 832 (929)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 5666777765 34554432 46788888888888766677788888888888888886643
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.49 E-value=0.00044 Score=68.65 Aligned_cols=120 Identities=12% Similarity=0.107 Sum_probs=79.7
Q ss_pred hhhhhcCCCCceEEEcCCC-CCCCCCCcccccccccccccccccccCCCCCCcEEECCCCCCCCC----CccccCCCCCC
Q 045967 232 FQALVQNMTKLQVLSLASL-EMSTVVPDSLKNLSSSLTFSELANSIGNLKLLGRLMLGYSQFVGP----VPASLGNLTQL 306 (929)
Q Consensus 232 ~~~~l~~l~~L~~L~Ls~~-~l~~~~p~~l~~l~~~L~~g~ip~~l~~l~~L~~L~Ls~n~l~~~----lp~~~~~l~~L 306 (929)
+...+.+-+.|+.|+|+++ .+.+..- ..+.+.+..-+.|++|+|++|.+... +-+.+..-+.|
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga------------~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL 100 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERI------------RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL 100 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHH------------HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHH------------HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCcc
Confidence 4455666778999999885 6643211 12445566678899999999988743 34445566889
Q ss_pred CEEeccCccCCCC----CccccCCCCCCCEEEccCCcC---CCC----CCC-CCCCCCCCEEeCCCCcC
Q 045967 307 TLLHLMHNNFSSH----IPSSLSNLVQLTCLDLSGNSF---VGE----IPD-IVNLTQVSFFDLSNNQL 363 (929)
Q Consensus 307 ~~L~Ls~n~l~~~----~p~~l~~L~~L~~L~Ls~N~l---~~~----~p~-l~~L~~L~~L~Ls~n~l 363 (929)
++|+|+.|.|... +-+.+..-+.|++|+|++|.. ... +.. +..-+.|+.|+++.|.+
T Consensus 101 ~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 101 RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 9999999998753 334556667799999986532 211 111 44557788888876653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.70 E-value=0.017 Score=53.33 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=39.7
Q ss_pred EEECCCCCCC-CCCccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccCCcCC
Q 045967 284 RLMLGYSQFV-GPVPASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSGNSFV 341 (929)
Q Consensus 284 ~L~Ls~n~l~-~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~N~l~ 341 (929)
.++.++++++ ..+|..+. .+|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6777777775 24665544 46788888888887666666777788888888887664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.43 E-value=45 Score=28.44 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=36.4
Q ss_pred ccCCCCcccccCCCCCcEEEccCCcCCCCCcccccCCCCCceeecccc
Q 045967 628 ELEGANPQSLVNCTKLEVLDIGNNKINDVFPYWLGNLPELRVLVLRSN 675 (929)
Q Consensus 628 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 675 (929)
.++.+....|.+|++|+.+.|-.+ ++.+...+|.++.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444555678899999999999865 56666778999999998888664
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=32.74 E-value=38 Score=24.15 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=4.2
Q ss_pred HHHhhhhhccC
Q 045967 918 FMKMVVTWQSK 928 (929)
Q Consensus 918 ~~~~~~~~~~~ 928 (929)
++..-++.++|
T Consensus 32 ~~~RRRr~~~k 42 (44)
T 2l2t_A 32 VYVRRKSIKKK 42 (44)
T ss_dssp HHHHTTCSSCC
T ss_pred HHhhhhhhhhc
Confidence 33333444444
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.03 E-value=1.3e+02 Score=25.48 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=21.9
Q ss_pred ccccCCCCCCCEEeccCccCCCCCccccCCCCCCCEEEccC
Q 045967 297 PASLGNLTQLTLLHLMHNNFSSHIPSSLSNLVQLTCLDLSG 337 (929)
Q Consensus 297 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~ 337 (929)
...|.+|++|+.+.+-.+ ++..-..+|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345566666666666543 3333344566666666666554
Done!