BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045968
         (402 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 33.9 bits (76), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 24/130 (18%)

Query: 237 FELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAP------NLKSLDL 290
             L+ L++++T I   R  P    NL  +  +   K+++       P       L+ LDL
Sbjct: 183 VNLQSLRLEWTGI---RSLPASIANLQNLKSL---KIRNSPLSALGPAIHHLPKLEELDL 236

Query: 291 DGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAV 350
            GC A+            P + G  +P   L+RL L+D  NL ++       T+L+++ +
Sbjct: 237 RGCTALRNY---------PPIFGGRAP---LKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 351 LGCDQLEKLP 360
            GC  L +LP
Sbjct: 285 RGCVNLSRLP 294


>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
           Listeria Monocytogenes Str. 4b F2365 At 1.90 A
           Resolution
 pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
           Listeria Monocytogenes Str. 4b F2365 At 1.90 A
           Resolution
          Length = 231

 Score = 32.0 bits (71), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 27  AGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQ 74
           +G  LK    + G ++++ L L   QI  V+ +    +L  L+LD NQ
Sbjct: 99  SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 146


>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
           Domains
          Length = 308

 Score = 31.6 bits (70), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 27  AGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQ 74
           +G  LK    + G ++++ L L   QI  V+ +    +L  L+LD NQ
Sbjct: 93  SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 140


>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
          Internalin Domain With An Additional Leucine Rich
          Repeat Inserted
 pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
          Internalin Domain With An Additional Leucine Rich
          Repeat Inserted
 pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
          Internalin Domain With An Additional Leucine Rich
          Repeat Inserted
          Length = 311

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 24 LVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQ 74
          ++   + +K    ++   N+  L+L  NQI  +S +   P++  LFL+ N+
Sbjct: 49 IIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNK 99


>pdb|4GT6|A Chain A, Crystal Structure Of A Leucine Rich Cell Surface Protein
           (Faepraa2165_01021) From Faecalibacterium Prausnitzii
           A2-165 At 1.80 A Resolution
          Length = 394

 Score = 28.1 bits (61), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 26/151 (17%)

Query: 252 KRREPFVFRNLHRVTMVLCHKLKDVTFL--VFAPN----LKSLDLDGCDAMEEIISVGKF 305
            +RE   F+  + V  +  H      +L  V  P+    + +     C A+++I    + 
Sbjct: 240 SQREDPAFKIPNGVARIETHAFDSCAYLASVKXPDSVVSIGTGAFXNCPALQDIEFSSRI 299

Query: 306 AETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNS 365
            E PE +     F     L   D+P  E I       T++ + A  GC+QLE++ + S+ 
Sbjct: 300 TELPESV-----FAGCISLKSIDIP--EGI-------TQILDDAFAGCEQLERIAIPSSV 345

Query: 366 AK--ERKF----VIRGEEDWWNRLQWEDEAT 390
            K  E  F     +   E   +R QW   +T
Sbjct: 346 TKIPESAFSNCTALNNIEYSGSRSQWNAIST 376


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,791,198
Number of Sequences: 62578
Number of extensions: 403190
Number of successful extensions: 764
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 13
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)