Query 045968
Match_columns 402
No_of_seqs 158 out of 2296
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:26:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 4.8E-28 1E-32 250.0 12.0 376 1-394 483-883 (889)
2 PLN03210 Resistant to P. syrin 99.9 5.9E-23 1.3E-27 222.2 21.4 290 42-361 590-911 (1153)
3 KOG4194 Membrane glycoprotein 99.9 6.8E-23 1.5E-27 193.7 2.3 324 24-381 107-461 (873)
4 PLN00113 leucine-rich repeat r 99.8 4.6E-20 1E-24 198.6 19.2 131 37-174 89-224 (968)
5 KOG0444 Cytoskeletal regulator 99.8 3.7E-23 8E-28 196.9 -5.1 308 21-360 34-379 (1255)
6 PLN03210 Resistant to P. syrin 99.8 8E-20 1.7E-24 198.0 19.0 329 1-372 490-897 (1153)
7 KOG4194 Membrane glycoprotein 99.8 1.8E-21 3.8E-26 184.2 4.1 302 37-374 98-422 (873)
8 PLN00113 leucine-rich repeat r 99.8 2.2E-19 4.8E-24 193.3 19.1 149 21-175 95-249 (968)
9 KOG0444 Cytoskeletal regulator 99.8 2.5E-21 5.4E-26 184.6 -4.7 292 22-350 58-393 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 5.4E-18 1.2E-22 154.3 -2.6 316 25-354 189-539 (565)
11 PRK15387 E3 ubiquitin-protein 99.6 2.8E-14 6.1E-19 145.5 15.8 133 21-175 203-335 (788)
12 KOG0617 Ras suppressor protein 99.5 5.2E-16 1.1E-20 126.1 -4.5 165 29-216 21-188 (264)
13 KOG0618 Serine/threonine phosp 99.4 1E-14 2.2E-19 145.5 -0.9 256 41-331 219-488 (1081)
14 KOG0472 Leucine-rich repeat pr 99.4 6.5E-16 1.4E-20 140.9 -8.7 127 42-175 46-173 (565)
15 KOG4658 Apoptotic ATPase [Sign 99.4 1.7E-13 3.8E-18 142.5 7.6 332 21-379 525-878 (889)
16 PRK15370 E3 ubiquitin-protein 99.4 4.2E-13 9.1E-18 137.6 9.8 117 42-174 200-316 (754)
17 PRK15387 E3 ubiquitin-protein 99.4 1.7E-12 3.7E-17 132.6 13.9 247 42-357 202-458 (788)
18 KOG4237 Extracellular matrix p 99.4 3.9E-14 8.3E-19 129.2 -0.0 323 22-400 49-385 (498)
19 KOG0618 Serine/threonine phosp 99.4 1E-13 2.2E-18 138.5 1.6 271 65-361 47-327 (1081)
20 PRK15370 E3 ubiquitin-protein 99.4 2.3E-12 4.9E-17 132.3 10.4 201 41-294 178-378 (754)
21 KOG0617 Ras suppressor protein 99.3 1.5E-13 3.3E-18 111.9 -2.8 143 27-176 41-187 (264)
22 cd00116 LRR_RI Leucine-rich re 99.2 8.1E-12 1.8E-16 117.5 6.4 131 40-175 22-178 (319)
23 cd00116 LRR_RI Leucine-rich re 99.2 2.3E-11 4.9E-16 114.4 6.4 136 60-213 20-177 (319)
24 KOG4237 Extracellular matrix p 99.2 1.1E-12 2.3E-17 119.9 -4.2 281 46-374 51-352 (498)
25 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.5E-15 98.4 6.4 136 32-174 10-152 (175)
26 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.5E-15 98.4 4.9 140 50-209 6-148 (175)
27 KOG3207 Beta-tubulin folding c 99.0 4E-11 8.6E-16 111.1 -0.1 163 36-217 116-287 (505)
28 KOG4341 F-box protein containi 99.0 6.2E-11 1.3E-15 109.3 -1.5 91 258-358 318-416 (483)
29 KOG2120 SCF ubiquitin ligase, 98.9 4.6E-11 9.9E-16 105.7 -3.6 182 115-329 186-373 (419)
30 KOG4341 F-box protein containi 98.9 7.1E-11 1.5E-15 108.9 -2.8 285 42-358 139-441 (483)
31 KOG3207 Beta-tubulin folding c 98.8 1.5E-09 3.2E-14 100.9 1.0 182 85-295 118-313 (505)
32 KOG1259 Nischarin, modulator o 98.7 1.6E-09 3.5E-14 96.1 -0.8 106 61-175 282-387 (490)
33 KOG1259 Nischarin, modulator o 98.7 3.4E-09 7.3E-14 94.1 -0.3 132 84-239 280-411 (490)
34 KOG0532 Leucine-rich repeat (L 98.7 9.2E-10 2E-14 105.3 -4.1 169 41-237 75-244 (722)
35 KOG1909 Ran GTPase-activating 98.6 2.3E-08 4.9E-13 90.7 4.3 242 35-330 24-309 (382)
36 COG4886 Leucine-rich repeat (L 98.6 3.8E-08 8.2E-13 95.6 5.1 120 46-172 98-219 (394)
37 KOG2120 SCF ubiquitin ligase, 98.6 3.7E-09 7.9E-14 93.8 -2.0 184 138-355 186-375 (419)
38 COG4886 Leucine-rich repeat (L 98.6 6E-08 1.3E-12 94.2 5.7 193 67-297 97-291 (394)
39 PF13855 LRR_8: Leucine rich r 98.5 8.4E-08 1.8E-12 66.5 3.8 59 63-125 1-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.5 1.1E-07 2.4E-12 65.9 3.6 59 114-173 1-60 (61)
41 KOG0532 Leucine-rich repeat (L 98.4 3.6E-08 7.8E-13 94.7 -0.6 133 36-176 116-248 (722)
42 KOG0531 Protein phosphatase 1, 98.3 8.3E-08 1.8E-12 93.6 -1.2 106 61-175 70-175 (414)
43 KOG2982 Uncharacterized conser 98.3 2.2E-07 4.8E-12 82.7 1.2 209 85-327 68-287 (418)
44 KOG0531 Protein phosphatase 1, 98.2 1.4E-07 3E-12 92.1 -2.0 127 40-175 71-199 (414)
45 KOG1909 Ran GTPase-activating 98.2 1.2E-06 2.6E-11 79.7 3.2 13 258-270 296-308 (382)
46 KOG1947 Leucine rich repeat pr 98.1 1.3E-06 2.8E-11 86.9 2.0 240 84-359 184-443 (482)
47 PLN03150 hypothetical protein; 98.1 1.2E-05 2.5E-10 82.5 8.7 86 65-155 420-508 (623)
48 KOG1859 Leucine-rich repeat pr 98.0 2.5E-07 5.3E-12 91.4 -4.7 108 84-212 183-290 (1096)
49 PF12799 LRR_4: Leucine Rich r 98.0 1.4E-05 3E-10 51.0 4.4 40 115-155 2-41 (44)
50 KOG2982 Uncharacterized conser 97.9 2.3E-06 4.9E-11 76.4 0.3 225 89-359 46-284 (418)
51 KOG3665 ZYG-1-like serine/thre 97.9 9.9E-06 2.2E-10 83.1 4.1 31 115-146 174-204 (699)
52 KOG3665 ZYG-1-like serine/thre 97.9 1.1E-05 2.4E-10 82.8 3.9 105 88-210 122-229 (699)
53 PLN03150 hypothetical protein; 97.8 5.2E-05 1.1E-09 77.7 8.7 107 42-153 419-531 (623)
54 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.5E-10 49.8 3.6 38 89-129 2-39 (44)
55 KOG4579 Leucine-rich repeat (L 97.7 4.6E-06 1E-10 66.1 -0.7 107 45-156 31-141 (177)
56 PRK15386 type III secretion pr 97.7 0.00011 2.4E-09 70.0 8.3 62 61-131 50-112 (426)
57 KOG1644 U2-associated snRNP A' 97.7 5.6E-05 1.2E-09 64.0 4.8 98 45-146 46-149 (233)
58 KOG1644 U2-associated snRNP A' 97.7 6.3E-05 1.4E-09 63.7 5.1 122 45-172 23-150 (233)
59 PRK15386 type III secretion pr 97.7 0.00013 2.9E-09 69.4 7.7 85 36-133 47-134 (426)
60 KOG1947 Leucine rich repeat pr 97.6 2.6E-05 5.7E-10 77.5 2.4 242 60-335 185-443 (482)
61 KOG4579 Leucine-rich repeat (L 97.5 1.8E-05 4E-10 62.8 -1.0 109 62-175 26-136 (177)
62 KOG1859 Leucine-rich repeat pr 97.3 5.8E-06 1.3E-10 82.1 -6.1 127 40-174 163-291 (1096)
63 KOG2123 Uncharacterized conser 97.2 4E-05 8.6E-10 68.0 -1.8 101 61-168 17-123 (388)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00052 1.1E-08 60.6 2.0 112 60-175 40-156 (260)
65 KOG2123 Uncharacterized conser 96.8 0.00016 3.4E-09 64.3 -1.9 94 4-98 4-98 (388)
66 PF13306 LRR_5: Leucine rich r 96.7 0.006 1.3E-07 48.7 7.0 114 40-164 11-128 (129)
67 COG5238 RNA1 Ran GTPase-activa 96.7 0.0038 8.1E-08 55.6 5.7 185 40-237 29-252 (388)
68 KOG2739 Leucine-rich acidic nu 96.6 0.0015 3.3E-08 57.7 2.8 105 39-147 41-153 (260)
69 COG5238 RNA1 Ran GTPase-activa 96.1 0.008 1.7E-07 53.6 4.4 136 35-175 86-255 (388)
70 PF00560 LRR_1: Leucine Rich R 95.3 0.0077 1.7E-07 31.9 0.8 17 116-132 2-18 (22)
71 PF13306 LRR_5: Leucine rich r 94.9 0.076 1.6E-06 42.2 6.1 102 60-171 9-112 (129)
72 KOG3864 Uncharacterized conser 94.7 0.0037 8E-08 53.2 -2.1 62 258-330 123-187 (221)
73 PF13504 LRR_7: Leucine rich r 94.6 0.023 5.1E-07 28.0 1.5 16 115-130 2-17 (17)
74 PF13504 LRR_7: Leucine rich r 94.0 0.041 8.8E-07 27.1 1.5 17 343-360 1-17 (17)
75 KOG3864 Uncharacterized conser 93.8 0.019 4.1E-07 49.0 0.3 32 67-99 105-136 (221)
76 PF00560 LRR_1: Leucine Rich R 93.3 0.047 1E-06 28.9 1.2 20 89-110 1-20 (22)
77 smart00367 LRR_CC Leucine-rich 88.3 0.32 6.9E-06 26.8 1.4 17 342-358 1-17 (26)
78 KOG0473 Leucine-rich repeat pr 85.9 0.023 5E-07 49.6 -6.1 83 60-147 39-121 (326)
79 KOG0473 Leucine-rich repeat pr 85.7 0.042 9E-07 48.0 -4.6 94 77-175 31-124 (326)
80 smart00370 LRR Leucine-rich re 85.0 0.77 1.7E-05 25.1 1.9 18 115-132 3-20 (26)
81 smart00369 LRR_TYP Leucine-ric 85.0 0.77 1.7E-05 25.1 1.9 18 115-132 3-20 (26)
82 smart00364 LRR_BAC Leucine-ric 75.1 1.7 3.7E-05 23.9 1.0 17 115-131 3-19 (26)
83 PF13516 LRR_6: Leucine Rich r 55.5 7.5 0.00016 20.5 1.2 12 115-126 3-14 (24)
84 smart00365 LRR_SD22 Leucine-ri 54.5 8.9 0.00019 21.1 1.3 13 115-127 3-15 (26)
85 smart00368 LRR_RI Leucine rich 49.2 12 0.00027 20.8 1.4 13 115-127 3-15 (28)
86 KOG3763 mRNA export factor TAP 46.7 5.9 0.00013 39.4 -0.3 84 258-352 216-310 (585)
87 KOG3763 mRNA export factor TAP 40.7 19 0.00042 35.9 2.2 82 84-168 214-307 (585)
88 KOG4308 LRR-containing protein 34.0 0.88 1.9E-05 45.2 -8.3 17 110-127 112-128 (478)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.95 E-value=4.8e-28 Score=250.03 Aligned_cols=376 Identities=39% Similarity=0.640 Sum_probs=290.1
Q ss_pred CchhHHHHHHHHhhhcccccCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEecccccc-cccc
Q 045968 1 MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQE-LEMI 79 (402)
Q Consensus 1 mhdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~ 79 (402)
|||||||||+|++++....+++.++..+.+..++|....+..+|++++.++.+..++....++.|++|.+.++.. +..+
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~i 562 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEI 562 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhc
Confidence 899999999999997777778877777778888899999999999999999999999999999999999998853 7778
Q ss_pred chHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhh
Q 045968 80 ADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLIS 159 (402)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~ 159 (402)
+..+|..+|.|++|++++|. .+..+|..++.+. +|++|+++++++.++|.+++++.+|.+|++..+.....++. +..
T Consensus 563 s~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li-~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~ 639 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELV-HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILL 639 (889)
T ss_pred CHHHHhhCcceEEEECCCCC-ccCcCChHHhhhh-hhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhh
Confidence 88889999999999999986 8899999999999 99999999999999999999999999999998766666644 467
Q ss_pred CCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--
Q 045968 160 KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-- 237 (402)
Q Consensus 160 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-- 237 (402)
.+.+|++|.+....... +...+.++..+.+|+.+.++.....-+..+............+.+.++
T Consensus 640 ~L~~Lr~L~l~~s~~~~-------------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~ 706 (889)
T KOG4658|consen 640 ELQSLRVLRLPRSALSN-------------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK 706 (889)
T ss_pred hcccccEEEeecccccc-------------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc
Confidence 79999999998766322 667788899999999988875443222323222222222223332222
Q ss_pred -----------eeeeEeccccccccCCCC------ccc-cccccEEecccccCcccCcccccCCCCCEEeecCCcchHHH
Q 045968 238 -----------ELEELKIDYTEIVRKRRE------PFV-FRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEI 299 (402)
Q Consensus 238 -----------~L~~L~i~~~~~~~~~~~------~~~-~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~ 299 (402)
+|++|.|.++........ ... |+++.++.+.+|....++.+..-.|+|+.|.+..|..++++
T Consensus 707 ~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 707 RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 778888877766332211 112 66788888888877778888878899999999999999888
Q ss_pred hhcCCCCCCccccCCCCCCCcccee-ecCccccccccccCccCCCCccEEEecCCCCCCCCCCCCCCCCCC--eeEEE-c
Q 045968 300 ISVGKFAETPEMMGHISPFENLQRL-NLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKER--KFVIR-G 375 (402)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~L~~L-~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~--~~~~~-~ 375 (402)
.+...... ........|..+..+ .+.+.+.+..+.+....++.|+.+.+..||++..+|.+......+ .+.+. .
T Consensus 787 i~~~k~~~--~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~ 864 (889)
T KOG4658|consen 787 IPKLKALL--ELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYP 864 (889)
T ss_pred CCHHHHhh--hcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecC
Confidence 65322211 011124556666666 466777788888888888999999999999999999987766433 23333 3
Q ss_pred cHHHhhhccccchhhhhhc
Q 045968 376 EEDWWNRLQWEDEATQIAF 394 (402)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~ 394 (402)
+.+|.+.++|.+++.+..|
T Consensus 865 ~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 865 DGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred CccceeeEEehhhhhhhhc
Confidence 4678888999999988766
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=5.9e-23 Score=222.20 Aligned_cols=290 Identities=19% Similarity=0.237 Sum_probs=201.0
Q ss_pred cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEe
Q 045968 42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI 121 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L 121 (402)
++|.|.+.++.+..+|......+|+.|++.++ .+..++.. ++.+++|+.|+++++. .+..+|. ++.+. +|++|++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s-~l~~L~~~-~~~l~~Lk~L~Ls~~~-~l~~ip~-ls~l~-~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGS-KLEKLWDG-VHSLTGLRNIDLRGSK-NLKEIPD-LSMAT-NLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCCCCCCcCCccCCcEEECcCc-cccccccc-cccCCCCCEEECCCCC-CcCcCCc-cccCC-cccEEEe
Confidence 45556666666666676667889999999988 78888776 7889999999999985 5677764 67777 9999999
Q ss_pred cCC-CCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968 122 SCT-GITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL 200 (402)
Q Consensus 122 ~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 200 (402)
++| .+..+|..++++++|+.|++++|+.++.+|.. + ++++|++|++.+|....... . ..
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p----------------~--~~ 724 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFP----------------D--IS 724 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccc----------------c--cc
Confidence 997 67889999999999999999999999999975 3 79999999999986543110 0 12
Q ss_pred CCCceEEEEecCchhhHhhhhhhhhcccceeeEecc---------------------ceeeeEeccccccccCCCC-ccc
Q 045968 201 KYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDG---------------------FELEELKIDYTEIVRKRRE-PFV 258 (402)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---------------------~~L~~L~i~~~~~~~~~~~-~~~ 258 (402)
.+|+.|.++.+.... ++... ...+|..|.+.+ .+|++|+++++.....+|. .+.
T Consensus 725 ~nL~~L~L~~n~i~~---lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~ 800 (1153)
T PLN03210 725 TNISWLDLDETAIEE---FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN 800 (1153)
T ss_pred CCcCeeecCCCcccc---ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC
Confidence 344555554333222 11111 122333333322 1466666666544333332 125
Q ss_pred cccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcC-CC--------CCCccccCCCCCCCccceeecCcc
Q 045968 259 FRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVG-KF--------AETPEMMGHISPFENLQRLNLEDL 329 (402)
Q Consensus 259 ~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~--------~~~~~~~~~~~~l~~L~~L~l~~c 329 (402)
+++|+.|++++|..++.+|....+++|+.|++++|..++.++... .. +.. +.+..+..+++|+.|++.+|
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 777788888777767777655567777777777777665443110 00 000 12234677889999999999
Q ss_pred ccccccccCccCCCCccEEEecCCCCCCCCCC
Q 045968 330 PNLESIYWKPLPFTRLKEMAVLGCDQLEKLPV 361 (402)
Q Consensus 330 ~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~ 361 (402)
++++.++.....+++|+.+++++|++|+.++.
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCcccccccC
Confidence 99999988888889999999999999987754
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=6.8e-23 Score=193.73 Aligned_cols=324 Identities=20% Similarity=0.239 Sum_probs=152.1
Q ss_pred EEEeCCccccCCCccCCcc-ceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968 24 LVRAGAGLKEAPDVKGWEN-VRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100 (402)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~-l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (402)
+.+....+..||.+..... ++.|++..|.|..+..- ..++.||+|+++.| .+..++...|..-.++++|+++.|
T Consensus 107 v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N-- 183 (873)
T KOG4194|consen 107 VNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASN-- 183 (873)
T ss_pred eeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccc--
Confidence 3334444444444444332 44444444444443221 44444444444444 444444333444444444444444
Q ss_pred ccccc-ccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccc
Q 045968 101 GRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFH 178 (402)
Q Consensus 101 ~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 178 (402)
.|+.+ ...|..+. +|..|.|++|+++.+|.. +.++++|+.|++.. +.++-+...++.++++|+.|.+..+.+...
T Consensus 184 ~It~l~~~~F~~ln-sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~I~kL- 260 (873)
T KOG4194|consen 184 RITTLETGHFDSLN-SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRNDISKL- 260 (873)
T ss_pred cccccccccccccc-hheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcCcccc-
Confidence 44444 22344444 444444444444444433 33344444444444 333333222244444444444444333211
Q ss_pred cCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--------------eeeeEec
Q 045968 179 EAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--------------ELEELKI 244 (402)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------------~L~~L~i 244 (402)
.-..+..+.++++|++..+...... .+..-....|+.|++++| .|++|++
T Consensus 261 --------------~DG~Fy~l~kme~l~L~~N~l~~vn--~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 261 --------------DDGAFYGLEKMEHLNLETNRLQAVN--EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred --------------cCcceeeecccceeecccchhhhhh--cccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 0112334455555555544333221 111222334555555555 4444444
Q ss_pred cccccccCCCCcc-ccccccEEecccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCcc
Q 045968 245 DYTEIVRKRREPF-VFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENL 321 (402)
Q Consensus 245 ~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L 321 (402)
+.+.+....+.++ .++.|+.|.++++ .++++. .+..+.+|++|+++.+.. ...++ .....+.++++|
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~l-s~~IE--------Daa~~f~gl~~L 394 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNEL-SWCIE--------DAAVAFNGLPSL 394 (873)
T ss_pred cccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeE-EEEEe--------cchhhhccchhh
Confidence 4444433222211 3455666666665 455552 344566777777766432 22221 112356678888
Q ss_pred ceeecCccccccccccCc-cCCCCccEEEecCCCCCCCCCCCCCCCC--------CCeeEEEccHHHhh
Q 045968 322 QRLNLEDLPNLESIYWKP-LPFTRLKEMAVLGCDQLEKLPVDSNSAK--------ERKFVIRGEEDWWN 381 (402)
Q Consensus 322 ~~L~l~~c~~l~~i~~~~-~~~~~L~~L~i~~c~~L~~lp~~~~~~~--------~~~~~~~~~~~~~~ 381 (402)
+.|.+.+ ++++.|+..+ .+++.|++|++.+-+ +.++..+..... ..-..++|...|..
T Consensus 395 rkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~ 461 (873)
T KOG4194|consen 395 RKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVMNSSSFLCDCQLKWLA 461 (873)
T ss_pred hheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhhhcccceEEeccHHHHH
Confidence 8888887 5788887643 347888888885432 343322221111 22235678888876
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=4.6e-20 Score=198.57 Aligned_cols=131 Identities=22% Similarity=0.325 Sum_probs=59.5
Q ss_pred ccCCccceEEEccCCccc-ccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccc-ccccccccc
Q 045968 37 VKGWENVRRLSLMQNQIE-TVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVL 112 (402)
Q Consensus 37 ~~~~~~l~~L~l~~~~~~-~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~~l 112 (402)
+..+++|+.|++++|.+. .+|.. ..+++|++|++++|.....+|. ..+++|++|++++| .+. .+|..++.+
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n--~~~~~~p~~~~~l 163 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNN--MLSGEIPNDIGSF 163 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCC--cccccCChHHhcC
Confidence 445566666666666554 33332 2555555555555522112221 23444555555544 333 234444444
Q ss_pred cccccEEEecCCCCc-cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 113 GSSLELLDISCTGIT-ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 113 ~~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
. +|++|++++|.+. .+|..+.++++|++|++++|.....+|.. +.++++|++|++.+|.+
T Consensus 164 ~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 164 S-SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL 224 (968)
T ss_pred C-CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc
Confidence 4 4555555444432 34444444444444444443222233332 44444444444444433
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=3.7e-23 Score=196.89 Aligned_cols=308 Identities=19% Similarity=0.237 Sum_probs=186.0
Q ss_pred CcEEEEeCCccccCCC-ccCCccceEEEccCCcccccC-CCCCCCccceEecccccccc--ccchHHhccCCCCCEEEcc
Q 045968 21 RNFLVRAGAGLKEAPD-VKGWENVRRLSLMQNQIETVS-EVPTCPHLLTLFLDFNQELE--MIADGFFQLMPSLKVLKMS 96 (402)
Q Consensus 21 ~~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~l~~L~~L~l~ 96 (402)
..++...+..+..+|. ++.+.+|++|++..|.+..+. ..+.+|.||.+.+..| ++. .+|+. +-++..|..|+++
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~d-iF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTD-IFRLKDLTILDLS 111 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-ccccCCCCch-hcccccceeeecc
Confidence 5778888888888864 777788999999888776653 4578888888888877 544 37777 6678888888888
Q ss_pred CCCccccccccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 97 NCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 97 ~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
+| .+.+.|..+.... ++.+|+|++|.|..+|.. +.+++-|-+||++. +.+..+|+. ++++.+|++|.++++...
T Consensus 112 hN--qL~EvP~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 112 HN--QLREVPTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hh--hhhhcchhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCChhh
Confidence 88 8888888877777 888888888888888876 56788888888888 688888876 788888888888877763
Q ss_pred ccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-------------eeeeE
Q 045968 176 RFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-------------ELEEL 242 (402)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------~L~~L 242 (402)
. .-+..+..++.|+.|++++.. .....++.+.....+|..++++.+ +|+.|
T Consensus 187 h---------------fQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 187 H---------------FQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRL 250 (1255)
T ss_pred H---------------HHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhhee
Confidence 2 234444455555555555332 122233333333333333333333 33333
Q ss_pred eccccccccCCCCccccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCc------------
Q 045968 243 KIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETP------------ 309 (402)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~------------ 309 (402)
.++++.+.....-.+.-.+|++|+++.+ +++.+| .+..+++|+.|.+.++.. + |.|.+|
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL-~------FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKL-T------FEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcc-c------ccCCccchhhhhhhHHHH
Confidence 3333322211111112334555555554 444443 333445554444444221 1 111110
Q ss_pred -------cccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCC
Q 045968 310 -------EMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLP 360 (402)
Q Consensus 310 -------~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp 360 (402)
-.+..+..|+.|+.|.++. +.+-.+|....-+|.|+.|+++.-|+|..-|
T Consensus 323 aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 323 AANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 0113556666677776643 5555566555556777777777777766544
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=8e-20 Score=197.98 Aligned_cols=329 Identities=23% Similarity=0.301 Sum_probs=233.7
Q ss_pred CchhHHHHHHHHhhhcc--cccCcEEEEeC----------------------Ccccc--C--CCccCCccceEEEccCCc
Q 045968 1 MHDVIRDMAIWITCEIE--KEKRNFLVRAG----------------------AGLKE--A--PDVKGWENVRRLSLMQNQ 52 (402)
Q Consensus 1 mhdl~~~~~~~~~~~~~--~~~~~~~~~~~----------------------~~~~~--~--~~~~~~~~l~~L~l~~~~ 52 (402)
|||++|+||..++++++ ++++.+++..+ ....+ + ..+.++++|+.|.+..+.
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 99999999999998764 33444443221 00111 1 246788999999886553
Q ss_pred cc-------ccCCC-CCC-CccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecC
Q 045968 53 IE-------TVSEV-PTC-PHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISC 123 (402)
Q Consensus 53 ~~-------~~~~~-~~~-~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~ 123 (402)
.. .+|.. ..+ ++|+.|.+.++ .+..+|.. | .+.+|++|++.++ .+..++..+..+. +|++|++++
T Consensus 570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~-f-~~~~L~~L~L~~s--~l~~L~~~~~~l~-~Lk~L~Ls~ 643 (1153)
T PLN03210 570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSN-F-RPENLVKLQMQGS--KLEKLWDGVHSLT-GLRNIDLRG 643 (1153)
T ss_pred ccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCc-C-CccCCcEEECcCc--cccccccccccCC-CCCEEECCC
Confidence 21 13332 333 46999999987 78888876 4 5789999999999 8999988888888 999999998
Q ss_pred C-CCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCC
Q 045968 124 T-GITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKY 202 (402)
Q Consensus 124 ~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 202 (402)
+ .+..+| .+..+++|+.|++.+|..+..+|.. +.++++|++|++.+|..... +..-.++++
T Consensus 644 ~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~----------------Lp~~i~l~s 705 (1153)
T PLN03210 644 SKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEI----------------LPTGINLKS 705 (1153)
T ss_pred CCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCc----------------cCCcCCCCC
Confidence 6 567777 4788999999999999999999986 99999999999999876431 111126788
Q ss_pred CceEEEEecCchhhHhhhhhhhhcccceeeEeccce------------eeeEecccccccc-------CCCC-ccccccc
Q 045968 203 LEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFE------------LEELKIDYTEIVR-------KRRE-PFVFRNL 262 (402)
Q Consensus 203 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------L~~L~i~~~~~~~-------~~~~-~~~~~~L 262 (402)
|+.|.+++|. .+..++. ...+|+.|.++++. |++|.+.++.... ..+. ...+++|
T Consensus 706 L~~L~Lsgc~--~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCS--RLKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCC--Ccccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 9999998553 3333332 23578888888773 3334443321100 0000 0035789
Q ss_pred cEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccccc------
Q 045968 263 HRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESI------ 335 (402)
Q Consensus 263 ~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i------ 335 (402)
+.|++++|..+..+| .++.+++|+.|+|++|..++.++. . ..+++|+.|++++|..+..+
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------------~-~~L~sL~~L~Ls~c~~L~~~p~~~~n 847 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------------G-INLESLESLDLSGCSRLRTFPDISTN 847 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------------C-CCccccCEEECCCCCccccccccccc
Confidence 999999997777776 678899999999999998887753 1 25667777777777655443
Q ss_pred --------------ccCccCCCCccEEEecCCCCCCCCCCCCCCCCCCeeE
Q 045968 336 --------------YWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFV 372 (402)
Q Consensus 336 --------------~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~ 372 (402)
+.....+++|+.|++.+|++|+.+|...... ..++.
T Consensus 848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L-~~L~~ 897 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL-KHLET 897 (1153)
T ss_pred cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc-cCCCe
Confidence 3334568999999999999999998766554 44433
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.8e-21 Score=184.25 Aligned_cols=302 Identities=18% Similarity=0.256 Sum_probs=220.2
Q ss_pred ccCCccceEEEccCCcccccCCCC-CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc-cccccccc
Q 045968 37 VKGWENVRRLSLMQNQIETVSEVP-TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGS 114 (402)
Q Consensus 37 ~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~ 114 (402)
+..+++|+.+++..|.++.+|... ...+|+.|++.+| .+..+....++.++.||.|+++.| .++.++ ..|..-.
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN--~is~i~~~sfp~~~- 173 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRN--LISEIPKPSFPAKV- 173 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhc--hhhcccCCCCCCCC-
Confidence 455667777777777777777773 4455888888877 777777666888888888888888 788875 3454445
Q ss_pred cccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchh
Q 045968 115 SLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVL 193 (402)
Q Consensus 115 ~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (402)
++++|+|++|.|+.+..+ +..+.+|-.|.++. +.++.+|..+++++++|+.|++..+.+..+ .
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~iriv---------------e 237 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIV---------------E 237 (873)
T ss_pred CceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceeee---------------h
Confidence 899999999998877654 67778899999998 788999987788899999999998887532 2
Q ss_pred hHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--------------eeeeEeccccccccCCCCcc-c
Q 045968 194 IQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--------------ELEELKIDYTEIVRKRREPF-V 258 (402)
Q Consensus 194 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------------~L~~L~i~~~~~~~~~~~~~-~ 258 (402)
...++.++.|+.|.+.-++...++ .+....+..++.|+++.| .|+.|+++.+.+..+-.+.| +
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~--DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLD--DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhcCchhhhhhhhhhcCccccc--Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 234667777777777755544433 233445667888888887 67777888777755444432 6
Q ss_pred cccccEEecccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccc---cc
Q 045968 259 FRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPN---LE 333 (402)
Q Consensus 259 ~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~---l~ 333 (402)
+++|+.|+++.+ .++.++ .+..+..|++|.++++ .++.+-. ..+.++.+|+.|+++++.- ++
T Consensus 316 tqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e-----------~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 316 TQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAE-----------GAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred cccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHh-----------hHHHHhhhhhhhcCcCCeEEEEEe
Confidence 789999999998 788885 5667899999999995 4555532 4678889999999998542 23
Q ss_pred ccccCccCCCCccEEEecCCCCCCCCCCCCCCCCCCeeEEE
Q 045968 334 SIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIR 374 (402)
Q Consensus 334 ~i~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~~~ 374 (402)
+-.....++|+|++|++.+ .+||.+|....+..++++..+
T Consensus 383 Daa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred cchhhhccchhhhheeecC-ceeeecchhhhccCcccceec
Confidence 3322333489999999976 578888765555545555554
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=2.2e-19 Score=193.28 Aligned_cols=149 Identities=26% Similarity=0.334 Sum_probs=106.4
Q ss_pred CcEEEEeCCccc-cCCC--ccCCccceEEEccCCcccccCCCCCCCccceEecccccccc-ccchHHhccCCCCCEEEcc
Q 045968 21 RNFLVRAGAGLK-EAPD--VKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELE-MIADGFFQLMPSLKVLKMS 96 (402)
Q Consensus 21 ~~~~~~~~~~~~-~~~~--~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~ 96 (402)
...+......+. .+|. +..+.+|++|++++|.+....+...+++|++|++++| .+. .+|.. ++.+++|++|+++
T Consensus 95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~ 172 (968)
T PLN00113 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLG 172 (968)
T ss_pred CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCC-cccccCChH-HhcCCCCCEEECc
Confidence 455555555543 3443 2367889999998888765434456788888888887 444 45554 7888888888888
Q ss_pred CCCcccc-ccccccccccccccEEEecCCCCc-cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 97 NCGQGRL-KLPVGMSVLGSSLELLDISCTGIT-ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 97 ~~~~~i~-~l~~~~~~l~~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
+| .+. .+|..++.+. +|++|++++|.+. .+|..+.++++|++|++.+|.....+|.. +.++++|++|++.+|.+
T Consensus 173 ~n--~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 173 GN--VLVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL 248 (968)
T ss_pred cC--cccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee
Confidence 88 665 5577777777 8888888888765 56777888888888888885444456654 77888888888887766
Q ss_pred c
Q 045968 175 D 175 (402)
Q Consensus 175 ~ 175 (402)
.
T Consensus 249 ~ 249 (968)
T PLN00113 249 T 249 (968)
T ss_pred c
Confidence 3
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=2.5e-21 Score=184.55 Aligned_cols=292 Identities=21% Similarity=0.227 Sum_probs=198.9
Q ss_pred cEEEEeCCccccC-CCccCCccceEEEccCCcccc--cC-CCCCCCccceEeccccccccccchHHhccCCCCCEEEccC
Q 045968 22 NFLVRAGAGLKEA-PDVKGWENVRRLSLMQNQIET--VS-EVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN 97 (402)
Q Consensus 22 ~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~ 97 (402)
..+.++...+..+ ..++.++.||.+.+..|+++. +| ++..+..|++|++++| ++.+.|.. +...+++-+|++++
T Consensus 58 EHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~-LE~AKn~iVLNLS~ 135 (1255)
T KOG0444|consen 58 EHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTN-LEYAKNSIVLNLSY 135 (1255)
T ss_pred hhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchh-hhhhcCcEEEEccc
Confidence 4455555555444 456777899999999997764 44 4488999999999999 89999988 89999999999999
Q ss_pred CCccccccccc-cccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccc
Q 045968 98 CGQGRLKLPVG-MSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR 176 (402)
Q Consensus 98 ~~~~i~~l~~~-~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 176 (402)
| .|..+|.. |.++. .|-+|||++|++..+|.-+.++.+|++|++++ +-+.++....+.+|++|+.|++++.+.+-
T Consensus 136 N--~IetIPn~lfinLt-DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 136 N--NIETIPNSLFINLT-DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred C--ccccCCchHHHhhH-hHhhhccccchhhhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccccchh
Confidence 9 99999865 45677 89999999999999999999999999999999 45555433225567888888888877652
Q ss_pred cccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-------------eeeeEe
Q 045968 177 FHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-------------ELEELK 243 (402)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------~L~~L~ 243 (402)
......+..+.+|+.++++.++ ++.++.......+|++|+++++ +|++|.
T Consensus 212 --------------~N~Ptsld~l~NL~dvDlS~N~---Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 212 --------------DNIPTSLDDLHNLRDVDLSENN---LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLN 274 (1255)
T ss_pred --------------hcCCCchhhhhhhhhccccccC---CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhc
Confidence 2233445566677777776443 3334444445567777777777 455555
Q ss_pred ccccccccCCCCccccccccEEecccccCcc-------------------------cCc-ccccCCCCCEEeecCCcchH
Q 045968 244 IDYTEIVRKRREPFVFRNLHRVTMVLCHKLK-------------------------DVT-FLVFAPNLKSLDLDGCDAME 297 (402)
Q Consensus 244 i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-------------------------~l~-~~~~l~~L~~L~l~~c~~l~ 297 (402)
++.+.....+.....+++|++|++.++ .++ -+| .+..+++|+.|.++.+..++
T Consensus 275 lSrNQLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 275 LSRNQLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred cccchhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee
Confidence 555444222222224566666666554 222 222 23345566666666644432
Q ss_pred HHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEe
Q 045968 298 EIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAV 350 (402)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i 350 (402)
+ +..+--+|-|+.|++..++++.-=|....+-.+|+.-.|
T Consensus 354 -L------------PeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 354 -L------------PEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred -c------------hhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 2 346778899999999999988654444333344544444
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=5.4e-18 Score=154.31 Aligned_cols=316 Identities=21% Similarity=0.206 Sum_probs=205.4
Q ss_pred EEeCCccccCC-CccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccc
Q 045968 25 VRAGAGLKEAP-DVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRL 103 (402)
Q Consensus 25 ~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~ 103 (402)
......+..+| .++++.++..|++..|.+..+|.+..|..|+++.+..| .++.+|..+.+.++++.+|++.+| +++
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN--klk 265 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN--KLK 265 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc--ccc
Confidence 33444556664 57888889999999999999998899999999998877 888999888889999999999999 899
Q ss_pred ccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCC--CCcEEEee-eecccccccC
Q 045968 104 KLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFS--RLRVLRMF-AIGYDRFHEA 180 (402)
Q Consensus 104 ~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~-~~~~~~~~~~ 180 (402)
++|..+..+. +|++||+++|.++.+|..++++ +|++|.+.| +-++.+..+++.+-+ -|++|+-. .+......
T Consensus 266 e~Pde~clLr-sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leG-NPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s-- 340 (565)
T KOG0472|consen 266 EVPDEICLLR-SLERLDLSNNDISSLPYSLGNL-HLKFLALEG-NPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS-- 340 (565)
T ss_pred cCchHHHHhh-hhhhhcccCCccccCCcccccc-eeeehhhcC-CchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC--
Confidence 9999888888 8999999999999999999999 999999999 566666555333222 24454321 11111111
Q ss_pred CCcccccCC--cchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceee--------------eEec
Q 045968 181 PEDSVLFGG--GEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELE--------------ELKI 244 (402)
Q Consensus 181 ~~~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~--------------~L~i 244 (402)
+|+..... ....+.......+.+.|+++.-....++.-.-......-+...+++.+.|. .+.+
T Consensus 341 -e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 341 -EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL 419 (565)
T ss_pred -cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence 11100000 111223344445556666654333332211111111223444555555222 1222
Q ss_pred cccccccCCCC-ccccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhh-------------cCCCCCCc
Q 045968 245 DYTEIVRKRRE-PFVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIIS-------------VGKFAETP 309 (402)
Q Consensus 245 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~-------------~~~~~~~~ 309 (402)
+ ....+|++. ...+++|..|+++++ .+.++| .++.+..|+.|+++.+.. ..++. .+.. ..+
T Consensus 420 s-nn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nq-i~~ 495 (565)
T KOG0472|consen 420 S-NNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQ-IGS 495 (565)
T ss_pred h-cCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhcccc-ccc
Confidence 2 223355554 116889999999887 677777 667788899999988632 22221 0000 000
Q ss_pred cccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCC
Q 045968 310 EMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCD 354 (402)
Q Consensus 310 ~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~ 354 (402)
-....++.+.+|..|++.+ ..+..||...+.|.+|++|++.+-|
T Consensus 496 vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 1123578889999999987 6789999999999999999998866
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=2.8e-14 Score=145.53 Aligned_cols=133 Identities=23% Similarity=0.197 Sum_probs=100.1
Q ss_pred CcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968 21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100 (402)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (402)
...+.+....+..+|... ..+++.|++.+|.++.+|.. .++|++|++++| .+..+|.. .++|+.|++.+|
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~l----p~sL~~L~Ls~N-- 272 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGN-QLTSLPVL----PPGLLELSIFSN-- 272 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCC-ccCcccCc----ccccceeeccCC--
Confidence 567777787888887633 25799999999999888754 588999999988 77777652 468889999998
Q ss_pred cccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 101 GRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 101 ~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
.++.+|... . +|+.|++++|++..+|.. .++|+.|++++ +.++.+|.. ..+|+.|.+.+|.+.
T Consensus 273 ~L~~Lp~lp---~-~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 273 PLTHLPALP---S-GLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLT 335 (788)
T ss_pred chhhhhhch---h-hcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC----cccccccccccCccc
Confidence 788776532 3 788889999988888763 46789999988 577777652 345777777776664
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=5.2e-16 Score=126.12 Aligned_cols=165 Identities=23% Similarity=0.358 Sum_probs=142.6
Q ss_pred CccccCCCccCCccceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccc
Q 045968 29 AGLKEAPDVKGWENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV 107 (402)
Q Consensus 29 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~ 107 (402)
..+.+++.+..++.+++|.++.|.+..+|+. ..+.+|+.|+++.| +++++|.+ ++.+++|+.|++.-| .+..+|.
T Consensus 21 Ssf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmn--rl~~lpr 96 (264)
T KOG0617|consen 21 SSFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMN--RLNILPR 96 (264)
T ss_pred ccHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchh--hhhcCcc
Confidence 3456778888889999999999999988765 89999999999977 99999998 999999999999999 8999999
Q ss_pred ccccccccccEEEecCCCCc--cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCccc
Q 045968 108 GMSVLGSSLELLDISCTGIT--ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSV 185 (402)
Q Consensus 108 ~~~~l~~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 185 (402)
.|+.++ .|++||++.|.+. .+|-.+.-++.|+.|+++. +.++-+|.+ ++++++|+.|.+.++...+
T Consensus 97 gfgs~p-~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll~--------- 164 (264)
T KOG0617|consen 97 GFGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLLS--------- 164 (264)
T ss_pred ccCCCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchhh---------
Confidence 999998 9999999998765 6888888889999999999 788999987 9999999999998887653
Q ss_pred ccCCcchhhHhhhcCCCCceEEEEecCchhh
Q 045968 186 LFGGGEVLIQELLGLKYLEVLELSLGSYHAL 216 (402)
Q Consensus 186 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 216 (402)
...+++.+..|++|++.++....+
T Consensus 165 -------lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 165 -------LPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred -------CcHHHHHHHHHHHHhcccceeeec
Confidence 446778888888999886654433
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=1e-14 Score=145.50 Aligned_cols=256 Identities=21% Similarity=0.249 Sum_probs=164.5
Q ss_pred ccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEE
Q 045968 41 ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120 (402)
Q Consensus 41 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~ 120 (402)
.+++.|+...|.+..+.....-.+|++++++++ .+..+|.+ +..|.+|+.+++.+| .+..+|..+.... +|++|+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~w-i~~~~nle~l~~n~N--~l~~lp~ri~~~~-~L~~l~ 293 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPEW-IGACANLEALNANHN--RLVALPLRISRIT-SLVSLS 293 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchh-hhhcchHH-HHhcccceEecccch--hHHhhHHHHhhhh-hHHHHH
Confidence 356666666666654433455677888888877 77777755 788888888888888 7777777777777 888888
Q ss_pred ecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCC-CcEEEeeeecccccccCCCcc------------ccc
Q 045968 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSR-LRVLRMFAIGYDRFHEAPEDS------------VLF 187 (402)
Q Consensus 121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~------------~~~ 187 (402)
+..|.+..+|.....+..|++|++.. +.+.++|...+..... |+.|+.+.+.....+ -.|. +..
T Consensus 294 ~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 294 AAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNH 370 (1081)
T ss_pred hhhhhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHhcCc
Confidence 88888888877777778888888877 5777776643332222 444444433332211 0000 000
Q ss_pred CCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhh-hhcccceeeEeccceeeeEeccccccccCCCCccccccccEEe
Q 045968 188 GGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSN-KLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVT 266 (402)
Q Consensus 188 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~ 266 (402)
- +...+..+.++++|+.|+++.+....++ ++. .....|+.|.+++|.|+.|..+- . .++.|++|.
T Consensus 371 L-td~c~p~l~~~~hLKVLhLsyNrL~~fp---as~~~kle~LeeL~LSGNkL~~Lp~tv---------a-~~~~L~tL~ 436 (1081)
T KOG0618|consen 371 L-TDSCFPVLVNFKHLKVLHLSYNRLNSFP---ASKLRKLEELEELNLSGNKLTTLPDTV---------A-NLGRLHTLR 436 (1081)
T ss_pred c-cccchhhhccccceeeeeecccccccCC---HHHHhchHHhHHHhcccchhhhhhHHH---------H-hhhhhHHHh
Confidence 0 4445666778888999999866544333 221 22234444444444444443111 2 688999999
Q ss_pred cccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccc
Q 045968 267 MVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPN 331 (402)
Q Consensus 267 l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 331 (402)
..++ .+..+|.+..++.|+.+|++.| .++.+.. ..... =|+|++|++++++.
T Consensus 437 ahsN-~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l----------~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 437 AHSN-QLLSFPELAQLPQLKVLDLSCN-NLSEVTL----------PEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hcCC-ceeechhhhhcCcceEEecccc-hhhhhhh----------hhhCC-CcccceeeccCCcc
Confidence 9887 7888999999999999999985 4554421 11111 28999999999765
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.44 E-value=6.5e-16 Score=140.92 Aligned_cols=127 Identities=24% Similarity=0.354 Sum_probs=83.6
Q ss_pred cceEEEccCCcccccC-CCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEE
Q 045968 42 NVRRLSLMQNQIETVS-EVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~ 120 (402)
.+..+.+..|.++.+. +...+..+.++.+.+| ++..+|+. ++.+..+..++.+++ .++.+|..++.+. +|..|+
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~a-ig~l~~l~~l~vs~n--~ls~lp~~i~s~~-~l~~l~ 120 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPAA-IGELEALKSLNVSHN--KLSELPEQIGSLI-SLVKLD 120 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccc-hhhhCCHH-HHHHHHHHHhhcccc--hHhhccHHHhhhh-hhhhhh
Confidence 4555666666666543 3466677777777766 55566655 666666677777777 6777776666666 777777
Q ss_pred ecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
.+.|.+.++|++++.+..|..++... +++..+|.+ +.++.+|..+.+.++...
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~-~~~~~~l~~l~~~~n~l~ 173 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATN-NQISSLPED-MVNLSKLSKLDLEGNKLK 173 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccc-cccccCchH-HHHHHHHHHhhccccchh
Confidence 77777777777777666677666665 566666665 666666666666666554
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.43 E-value=1.7e-13 Score=142.50 Aligned_cols=332 Identities=22% Similarity=0.273 Sum_probs=190.1
Q ss_pred CcEEEEeCCccccCCCccCCccceEEEccCCc--ccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEcc
Q 045968 21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQ--IETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMS 96 (402)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~ 96 (402)
...++.-...+..++.-..+++++.|-+.++. +..++. ...+|.|++|++++|..+..+|.+ ++.+-+||+|+++
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLS 603 (889)
T ss_pred eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhccccc
Confidence 35566666667777777777789999999985 566665 588999999999999889999988 9999999999999
Q ss_pred CCCccccccccccccccccccEEEecCCC-CccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 97 NCGQGRLKLPVGMSVLGSSLELLDISCTG-ITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 97 ~~~~~i~~l~~~~~~l~~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
++ .++.+|..++++. .|.+|++..++ +..+|.....+++|++|.+..- . .......++.+.+|++|....+...
T Consensus 604 ~t--~I~~LP~~l~~Lk-~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s-~-~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 604 DT--GISHLPSGLGNLK-KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS-A-LSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred CC--CccccchHHHHHH-hhheeccccccccccccchhhhcccccEEEeecc-c-cccchhhHHhhhcccchhhheeecc
Confidence 99 9999999999999 99999999974 4445555666999999999873 3 1111122444445555544433332
Q ss_pred cc--ccCCCcc--------ccc---CCcchhhHhhhcCCCCceEEEEecCchhhHh-hhhhhhhcccceeeEeccc-eee
Q 045968 176 RF--HEAPEDS--------VLF---GGGEVLIQELLGLKYLEVLELSLGSYHALQI-LLSSNKLKSCIRSLCLDGF-ELE 240 (402)
Q Consensus 176 ~~--~~~~~~~--------~~~---~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~-~L~ 240 (402)
.. ...+.+. .+. ......+..+..+.+|+.|.+..++...+.. ......... +. ++.
T Consensus 679 s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~--------~f~~l~ 750 (889)
T KOG4658|consen 679 SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL--------CFPNLS 750 (889)
T ss_pred hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhh--------hHHHHH
Confidence 11 0111110 000 0011122234445555555555443322110 000000000 00 122
Q ss_pred eEeccccccccCCCCccccccccEEecccccCcccC-cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCC
Q 045968 241 ELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV-TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFE 319 (402)
Q Consensus 241 ~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~ 319 (402)
.+.+..+.....+.+....++|++|++..|..++++ +....+..++++.+..+ .+.........+...........++
T Consensus 751 ~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~~~~~l~~l~~i~~~~l~~~ 829 (889)
T KOG4658|consen 751 KVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLRMLCSLGGLPQLYWLPLSFL 829 (889)
T ss_pred HHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccceeeecCCCCceeEecccCcc
Confidence 223333333333333226789999999999877774 44444444444333221 1111100000000000111222333
Q ss_pred ccceeecCccccccccccCccCCCCccEEEecCC-CCCCCCCCCCCCCCCCeeEEEccHHH
Q 045968 320 NLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGC-DQLEKLPVDSNSAKERKFVIRGEEDW 379 (402)
Q Consensus 320 ~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c-~~L~~lp~~~~~~~~~~~~~~~~~~~ 379 (402)
.|+.+.+..||++.. +|.+.++.+.+| +++...|.. ..++.|.++.+.
T Consensus 830 ~l~~~~ve~~p~l~~-------~P~~~~~~i~~~~~~~~~~~~~-----~~~~~v~~~~~~ 878 (889)
T KOG4658|consen 830 KLEELIVEECPKLGK-------LPLLSTLTIVGCEEKLKEYPDG-----EWLEGVYWEDEL 878 (889)
T ss_pred chhheehhcCccccc-------CccccccceeccccceeecCCc-----cceeeEEehhhh
Confidence 455555555555544 588889999997 888888854 235566655443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=4.2e-13 Score=137.61 Aligned_cols=117 Identities=21% Similarity=0.309 Sum_probs=52.1
Q ss_pred cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEe
Q 045968 42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI 121 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L 121 (402)
.++.|++++|.++.+|... .++|++|++++| .+..+|..+ .++|+.|++++| .+..+|..+. . +|++|++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N-~LtsLP~~l---~~~L~~L~Ls~N--~L~~LP~~l~--s-~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELKSLPENL-QGNIKTLYANSN-QLTSIPATL---PDTIQEMELSIN--RITELPERLP--S-ALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCCcCChhh-ccCCCEEECCCC-ccccCChhh---hccccEEECcCC--ccCcCChhHh--C-CCCEEEC
Confidence 4555555555555444321 234555555544 444444331 124555555555 4444444332 1 4555555
Q ss_pred cCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 122 SCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 122 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
++|++..+|..+. .+|+.|++++ +.++.+|.. + .++|++|++.+|.+
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-l--p~sL~~L~Ls~N~L 316 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-L--PSGITHLNVQSNSL 316 (754)
T ss_pred cCCccCccccccC--CCCcEEECCC-CccccCccc-c--hhhHHHHHhcCCcc
Confidence 5555554444332 3455555555 244444432 1 12444444444443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=1.7e-12 Score=132.58 Aligned_cols=247 Identities=20% Similarity=0.167 Sum_probs=166.4
Q ss_pred cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEe
Q 045968 42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI 121 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L 121 (402)
.-..|+++.+.++.+|... .++|+.|.+.+| ++..+|. .+++|++|++++| .++.+|.. +++|+.|++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N-~Lt~LP~----lp~~Lk~LdLs~N--~LtsLP~l----p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDN-NLTSLPA----LPPELRTLEVSGN--QLTSLPVL----PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCC-cCCCCCC----CCCCCcEEEecCC--ccCcccCc----ccccceeec
Confidence 4556899999998888642 258999999988 7887775 2589999999999 89988753 238999999
Q ss_pred cCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCC
Q 045968 122 SCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLK 201 (402)
Q Consensus 122 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 201 (402)
++|.+..+|.. ..+|+.|++.+ +.++.+|.. +++|++|++++|.+...+. + ..
T Consensus 270 s~N~L~~Lp~l---p~~L~~L~Ls~-N~Lt~LP~~----p~~L~~LdLS~N~L~~Lp~-----------------l--p~ 322 (788)
T PRK15387 270 FSNPLTHLPAL---PSGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLASLPA-----------------L--PS 322 (788)
T ss_pred cCCchhhhhhc---hhhcCEEECcC-Ccccccccc----ccccceeECCCCccccCCC-----------------C--cc
Confidence 99999888763 36788999999 588888762 5789999999988764211 0 12
Q ss_pred CCceEEEEecCchhhHhhhhhhhhcccceeeEeccc----------eeeeEeccccccccCCCCccccccccEEeccccc
Q 045968 202 YLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF----------ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCH 271 (402)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----------~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~ 271 (402)
.|+.|.+..+....++. .+..|+.|++++| +|+.|.++++.... +|. ...+|+.|+++++
T Consensus 323 ~L~~L~Ls~N~L~~LP~------lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~-LP~--l~~~L~~LdLs~N- 392 (788)
T PRK15387 323 ELCKLWAYNNQLTSLPT------LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTS-LPA--LPSGLKELIVSGN- 392 (788)
T ss_pred cccccccccCccccccc------cccccceEecCCCccCCCCCCCcccceehhhcccccc-Ccc--cccccceEEecCC-
Confidence 34455555443333221 1234555555555 33344444444332 221 2457888888877
Q ss_pred CcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEec
Q 045968 272 KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVL 351 (402)
Q Consensus 272 ~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~ 351 (402)
.++.+|.. .++|+.|++++|. +..++ ..+.+|+.|++++ ..++.+|.....+++|+.|+++
T Consensus 393 ~Lt~LP~l--~s~L~~LdLS~N~-LssIP---------------~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 393 RLTSLPVL--PSELKELMVSGNR-LTSLP---------------MLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred cccCCCCc--ccCCCEEEccCCc-CCCCC---------------cchhhhhhhhhcc-CcccccChHHhhccCCCeEECC
Confidence 56666543 3678888888864 33332 1234678888877 4577777766778899999998
Q ss_pred CCCCCC
Q 045968 352 GCDQLE 357 (402)
Q Consensus 352 ~c~~L~ 357 (402)
+.+ |.
T Consensus 454 ~N~-Ls 458 (788)
T PRK15387 454 GNP-LS 458 (788)
T ss_pred CCC-CC
Confidence 764 44
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=3.9e-14 Score=129.20 Aligned_cols=323 Identities=20% Similarity=0.208 Sum_probs=163.0
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+...+.++.++|.--- .....+++..|.|+.+|+. ..+++||.|+++.| +|+.|.+.+|++++.|..|.+.++.
T Consensus 49 ~~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCC
Confidence 344455566666654322 3455666666666666654 56666666666666 6666666666666666666666522
Q ss_pred cccccccc-ccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968 100 QGRLKLPV-GMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF 177 (402)
Q Consensus 100 ~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 177 (402)
.|+++|. .|+.+. .|+-|.+.-|.+.-++.. +..+++|..|.+.. +.++.++..++..+.+++.+++..+.+.-.
T Consensus 127 -kI~~l~k~~F~gL~-slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 127 -KITDLPKGAFGGLS-SLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred -chhhhhhhHhhhHH-HHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccc
Confidence 6666653 355565 666666666666544433 56666666666666 455666554466666666665544432100
Q ss_pred ccCCCcccccCCcchh----hHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCC
Q 045968 178 HEAPEDSVLFGGGEVL----IQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKR 253 (402)
Q Consensus 178 ~~~~~~~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~ 253 (402)
=++.. .... ..+.+.+.-.....++. ..+.+..+. +..-.++.+ ...+. ..+.....-
T Consensus 204 ------CnL~w-la~~~a~~~ietsgarc~~p~rl~~---~Ri~q~~a~-kf~c~~esl------~s~~~-~~d~~d~~c 265 (498)
T KOG4237|consen 204 ------CNLPW-LADDLAMNPIETSGARCVSPYRLYY---KRINQEDAR-KFLCSLESL------PSRLS-SEDFPDSIC 265 (498)
T ss_pred ------cccch-hhhHHhhchhhcccceecchHHHHH---HHhcccchh-hhhhhHHhH------HHhhc-cccCcCCcC
Confidence 00000 0000 00000000000000000 000000000 000000000 00000 011111111
Q ss_pred CC---ccccccccEEecccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCc
Q 045968 254 RE---PFVFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLED 328 (402)
Q Consensus 254 ~~---~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 328 (402)
|. . .+++|++|+++++ .++.+. +|..+..+++|.+.++ .++.+.. ..+.++..|+.|++.+
T Consensus 266 P~~cf~-~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~-----------~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 266 PAKCFK-KLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFVSS-----------GMFQGLSGLKTLSLYD 331 (498)
T ss_pred hHHHHh-hcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHHHH-----------HhhhccccceeeeecC
Confidence 11 2 5788999999988 788873 7888899999999884 4555543 3667888999999988
Q ss_pred cccccccccCccC-CCCccEEEecCCCCCCCCCCCCCCCCCCeeEEEccHHHhhhccccchhhhhhccccccc
Q 045968 329 LPNLESIYWKPLP-FTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQP 400 (402)
Q Consensus 329 c~~l~~i~~~~~~-~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (402)
..++.+.+..+. ..+|.+|.+- .+...++|...|.. +|-....-.+.-+|=+|
T Consensus 332 -N~it~~~~~aF~~~~~l~~l~l~----------------~Np~~CnC~l~wl~--~Wlr~~~~~~~~~Cq~p 385 (498)
T KOG4237|consen 332 -NQITTVAPGAFQTLFSLSTLNLL----------------SNPFNCNCRLAWLG--EWLRKKSVVGNPRCQSP 385 (498)
T ss_pred -CeeEEEecccccccceeeeeehc----------------cCcccCccchHHHH--HHHhhCCCCCCCCCCCC
Confidence 466666554321 3333333331 12223456666666 55444444444445444
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.38 E-value=1e-13 Score=138.53 Aligned_cols=271 Identities=20% Similarity=0.200 Sum_probs=151.4
Q ss_pred cceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEc
Q 045968 65 LLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNL 144 (402)
Q Consensus 65 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 144 (402)
|+.|+++.| .+...|.. +-.+.+|+.|+++.| .+..+|.+.+.+. +|++|.|.+|.+..+|..+..+.+|+.|++
T Consensus 47 L~~l~lsnn-~~~~fp~~-it~l~~L~~ln~s~n--~i~~vp~s~~~~~-~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNN-QISSFPIQ-ITLLSHLRQLNLSRN--YIRSVPSSCSNMR-NLQYLNLKNNRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eEEeecccc-ccccCCch-hhhHHHHhhcccchh--hHhhCchhhhhhh-cchhheeccchhhcCchhHHhhhccccccc
Confidence 555555544 44444443 444455555555555 4555554444444 555555555555555555555555555555
Q ss_pred cCCCCccccchhhhhCCCCCcEEEeeeeccccc-c---cCCCcccccCCcchhhHhhhcCCCCceEEEEecCchh-----
Q 045968 145 RWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF-H---EAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHA----- 215 (402)
Q Consensus 145 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----- 215 (402)
+. +.+..+|.- +..++.++.+...++..... . +...+..++......+.++..+.+ .|++..+....
T Consensus 122 S~-N~f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 122 SF-NHFGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSN 197 (1081)
T ss_pred ch-hccCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhh
Confidence 55 444444442 44444444444443310000 0 000000000002223333333333 34443222220
Q ss_pred hHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCc-ccccCCCCCEEeecCCc
Q 045968 216 LQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCD 294 (402)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~ 294 (402)
...+......+..|..+.+.+-+++.|..+++...+..... ...+|+.++++.+ ++..+| |+..+++|+.|+...+.
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p-~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHP-VPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcceeecccc-ccccceeeecchh-hhhcchHHHHhcccceEecccchh
Confidence 00111112233456666666668888888887776555555 6789999999988 677775 78889999999999965
Q ss_pred chHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCCC
Q 045968 295 AMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPV 361 (402)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~ 361 (402)
. ..++ ..+....+|+.|++.+| .+++++.....+..|+.|++.. .+|..+|.
T Consensus 276 l-~~lp------------~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L~~lp~ 327 (1081)
T KOG0618|consen 276 L-VALP------------LRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPSLPD 327 (1081)
T ss_pred H-HhhH------------HHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-ccccccch
Confidence 5 4443 35666778888888774 6888888877788999999955 46777775
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=2.3e-12 Score=132.26 Aligned_cols=201 Identities=20% Similarity=0.278 Sum_probs=135.1
Q ss_pred ccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEE
Q 045968 41 ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120 (402)
Q Consensus 41 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~ 120 (402)
.+...|++.+++++.+|... .++++.|++++| .+..+|...+ ++|++|++++| .++.+|..+. . +|+.|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N--~LtsLP~~l~--~-~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNN-ELKSLPENLQ---GNIKTLYANSN--QLTSIPATLP--D-TIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCC-CCCcCChhhc---cCCCEEECCCC--ccccCChhhh--c-cccEEE
Confidence 35678999998888887642 357999999988 8888887643 58999999999 8998887653 2 899999
Q ss_pred ecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL 200 (402)
Q Consensus 121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 200 (402)
+++|.+..+|..+. .+|+.|++++ +.++.+|.. + .++|++|++++|.+...+. .+ .
T Consensus 248 Ls~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~----------------~l--p 303 (754)
T PRK15370 248 LSINRITELPERLP--SALQSLDLFH-NKISCLPEN-L--PEELRYLSVYDNSIRTLPA----------------HL--P 303 (754)
T ss_pred CcCCccCcCChhHh--CCCCEEECcC-CccCccccc-c--CCCCcEEECCCCccccCcc----------------cc--h
Confidence 99999999988764 5899999997 688888875 4 3589999999987753210 01 1
Q ss_pred CCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCcccc
Q 045968 201 KYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLV 280 (402)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 280 (402)
+.|+.|.++.+....++. . ..++|+.|.+++| .... +|.. .+++|+.|++++| .++.+|..
T Consensus 304 ~sL~~L~Ls~N~Lt~LP~---~--l~~sL~~L~Ls~N----------~Lt~-LP~~-l~~sL~~L~Ls~N-~L~~LP~~- 364 (754)
T PRK15370 304 SGITHLNVQSNSLTALPE---T--LPPGLKTLEAGEN----------ALTS-LPAS-LPPELQVLDVSKN-QITVLPET- 364 (754)
T ss_pred hhHHHHHhcCCccccCCc---c--ccccceeccccCC----------cccc-CChh-hcCcccEEECCCC-CCCcCChh-
Confidence 245666666544333221 1 1234444444433 3322 1222 2457777777776 55555421
Q ss_pred cCCCCCEEeecCCc
Q 045968 281 FAPNLKSLDLDGCD 294 (402)
Q Consensus 281 ~l~~L~~L~l~~c~ 294 (402)
-.++|+.|++++|.
T Consensus 365 lp~~L~~LdLs~N~ 378 (754)
T PRK15370 365 LPPTITTLDVSRNA 378 (754)
T ss_pred hcCCcCEEECCCCc
Confidence 13567777777754
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=1.5e-13 Score=111.86 Aligned_cols=143 Identities=28% Similarity=0.446 Sum_probs=126.2
Q ss_pred eCCccccC-CCccCCccceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccc-
Q 045968 27 AGAGLKEA-PDVKGWENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRL- 103 (402)
Q Consensus 27 ~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~- 103 (402)
+...+..+ |.+..+.+++.|.+.+|+++++|.. ++++.|+.|++..| .+..+|.. |+.+|.|++|++..| .+.
T Consensus 41 SHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprg-fgs~p~levldltyn--nl~e 116 (264)
T KOG0617|consen 41 SHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRG-FGSFPALEVLDLTYN--NLNE 116 (264)
T ss_pred ccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccc-cCCCchhhhhhcccc--cccc
Confidence 33444444 6688889999999999999999876 89999999999988 78888888 999999999999999 665
Q ss_pred -ccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccc
Q 045968 104 -KLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR 176 (402)
Q Consensus 104 -~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 176 (402)
.+|..|..+. .|+.|.++.|.+..+|..++++++|+.|.+.. +.+-.+|.+ ++.++.|++|++.++....
T Consensus 117 ~~lpgnff~m~-tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 117 NSLPGNFFYMT-TLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred ccCCcchhHHH-HHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhcccceeee
Confidence 5798888888 99999999999999999999999999999999 678889987 9999999999999987753
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.25 E-value=8.1e-12 Score=117.51 Aligned_cols=131 Identities=22% Similarity=0.174 Sum_probs=67.7
Q ss_pred CccceEEEccCCcccc-----cCC-CCCCCccceEeccccccccc------cchHHhccCCCCCEEEccCCCcccc-ccc
Q 045968 40 WENVRRLSLMQNQIET-----VSE-VPTCPHLLTLFLDFNQELEM------IADGFFQLMPSLKVLKMSNCGQGRL-KLP 106 (402)
Q Consensus 40 ~~~l~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~l~~------~~~~~~~~l~~L~~L~l~~~~~~i~-~l~ 106 (402)
+..++.+++.++.+.. ++. ....++++++.++++ .+.. .....+..+++|++|++++| .+. ..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~ 98 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDN--ALGPDGC 98 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCC--CCChhHH
Confidence 3446677777666532 221 245566667766655 2221 11122555667777777776 443 223
Q ss_pred ccccccc--ccccEEEecCCCCcc-----ccHhhhcC-CCCcEEEccCCCCcc-----ccchhhhhCCCCCcEEEeeeec
Q 045968 107 VGMSVLG--SSLELLDISCTGITE-----LPEELKKL-VNLKCLNLRWTGALI-----RIPRQLISKFSRLRVLRMFAIG 173 (402)
Q Consensus 107 ~~~~~l~--~~L~~L~L~~~~l~~-----lp~~i~~l-~~L~~L~l~~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~ 173 (402)
..+..+. ++|++|++++|.+.. +...+..+ ++|+.|++++|. ++ .++. .+..+++|++|++.+|.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAK-ALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHH-HHHhCCCcCEEECcCCC
Confidence 3333333 137777777765542 22234445 666777776643 33 1222 24555667777766665
Q ss_pred cc
Q 045968 174 YD 175 (402)
Q Consensus 174 ~~ 175 (402)
+.
T Consensus 177 l~ 178 (319)
T cd00116 177 IG 178 (319)
T ss_pred Cc
Confidence 53
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=2.3e-11 Score=114.44 Aligned_cols=136 Identities=25% Similarity=0.217 Sum_probs=76.4
Q ss_pred CCCCccceEecccccccc-----ccchHHhccCCCCCEEEccCCCccccc-------cccccccccccccEEEecCCCCc
Q 045968 60 PTCPHLLTLFLDFNQELE-----MIADGFFQLMPSLKVLKMSNCGQGRLK-------LPVGMSVLGSSLELLDISCTGIT 127 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~-----~~~~~~~~~l~~L~~L~l~~~~~~i~~-------l~~~~~~l~~~L~~L~L~~~~l~ 127 (402)
..+.+|+.+.+.++ .+. .++.. +...+.|++++++++ .+.. ++..+..+. +|++|++++|.+.
T Consensus 20 ~~l~~L~~l~l~~~-~l~~~~~~~i~~~-l~~~~~l~~l~l~~~--~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~ 94 (319)
T cd00116 20 PKLLCLQVLRLEGN-TLGEEAAKALASA-LRPQPSLKELCLSLN--ETGRIPRGLQSLLQGLTKGC-GLQELDLSDNALG 94 (319)
T ss_pred HHHhhccEEeecCC-CCcHHHHHHHHHH-HhhCCCceEEecccc--ccCCcchHHHHHHHHHHhcC-ceeEEEccCCCCC
Confidence 44556778888777 432 23333 566677888887777 4431 233445555 7888888777665
Q ss_pred c-ccHhhhcCCC---CcEEEccCCCCccc-----cchhhhhCC-CCCcEEEeeeecccccccCCCcccccCCcchhhHhh
Q 045968 128 E-LPEELKKLVN---LKCLNLRWTGALIR-----IPRQLISKF-SRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQEL 197 (402)
Q Consensus 128 ~-lp~~i~~l~~---L~~L~l~~~~~~~~-----~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (402)
. .+..+..+.+ |++|++++|. +.. +.. .+..+ ++|++|++.+|.+.... .......+
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~-----------~~~~~~~~ 161 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGAS-----------CEALAKAL 161 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchH-----------HHHHHHHH
Confidence 2 3333433333 7888877753 331 111 24455 77777777777764210 11123345
Q ss_pred hcCCCCceEEEEecCc
Q 045968 198 LGLKYLEVLELSLGSY 213 (402)
Q Consensus 198 ~~l~~L~~L~l~~~~~ 213 (402)
..+++|++|++.++..
T Consensus 162 ~~~~~L~~L~l~~n~l 177 (319)
T cd00116 162 RANRDLKELNLANNGI 177 (319)
T ss_pred HhCCCcCEEECcCCCC
Confidence 5566777777765543
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.16 E-value=1.1e-12 Score=119.87 Aligned_cols=281 Identities=19% Similarity=0.237 Sum_probs=178.2
Q ss_pred EEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecC-
Q 045968 46 LSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISC- 123 (402)
Q Consensus 46 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~- 123 (402)
.+-++.+++++|..-- +....+.+..| +|..+|+.+|+.+++||.|++++| .|+.+ |.+|..+. .|..|-+.+
T Consensus 51 VdCr~~GL~eVP~~LP-~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N--~Is~I~p~AF~GL~-~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP-PETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKN--NISFIAPDAFKGLA-SLLSLVLYGN 125 (498)
T ss_pred EEccCCCcccCcccCC-CcceEEEeccC-CcccCChhhccchhhhceeccccc--chhhcChHhhhhhH-hhhHHHhhcC
Confidence 3444456666664311 34556788888 999999999999999999999999 89998 88898888 777777776
Q ss_pred CCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCC
Q 045968 124 TGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKY 202 (402)
Q Consensus 124 ~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 202 (402)
|+|+++|.. +..+..|+.|.+.- +++..++.+++..+++|..|.+.++.+... .-..+..+..
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i---------------~~~tf~~l~~ 189 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSI---------------CKGTFQGLAA 189 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhh---------------ccccccchhc
Confidence 899999987 78899999999988 688888888899999999999999887532 1123445556
Q ss_pred CceEEEEecCchh------hHhh----hhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEE---eccc
Q 045968 203 LEVLELSLGSYHA------LQIL----LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRV---TMVL 269 (402)
Q Consensus 203 L~~L~l~~~~~~~------~~~~----~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L---~l~~ 269 (402)
++.+++.-+.... .... +......+..... .+......+..... +...++.+ ..+.
T Consensus 190 i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~----------rl~~~Ri~q~~a~k-f~c~~esl~s~~~~~ 258 (498)
T KOG4237|consen 190 IKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY----------RLYYKRINQEDARK-FLCSLESLPSRLSSE 258 (498)
T ss_pred cchHhhhcCccccccccchhhhHHhhchhhcccceecchH----------HHHHHHhcccchhh-hhhhHHhHHHhhccc
Confidence 6666665322110 0000 0000000000000 00000000111111 11112222 1122
Q ss_pred ccCcccC---cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccC-ccCCCCc
Q 045968 270 CHKLKDV---TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWK-PLPFTRL 345 (402)
Q Consensus 270 ~~~l~~l---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~~L 345 (402)
| .+..+ ..+..+++|+.|+++++ .++.+-. ..+.+...++.|.+.+ .+++.+... ...+..|
T Consensus 259 d-~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~-----------~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L 324 (498)
T KOG4237|consen 259 D-FPDSICPAKCFKKLPNLRKLNLSNN-KITRIED-----------GAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGL 324 (498)
T ss_pred c-CcCCcChHHHHhhcccceEeccCCC-ccchhhh-----------hhhcchhhhhhhhcCc-chHHHHHHHhhhccccc
Confidence 3 23332 25788999999999995 4555532 4667778899999987 567666543 3347899
Q ss_pred cEEEecCCCCCCCC-CCCCCCCCCCeeEEE
Q 045968 346 KEMAVLGCDQLEKL-PVDSNSAKERKFVIR 374 (402)
Q Consensus 346 ~~L~i~~c~~L~~l-p~~~~~~~~~~~~~~ 374 (402)
+.|++.+ .+++.+ |...... ..+..+.
T Consensus 325 ~tL~L~~-N~it~~~~~aF~~~-~~l~~l~ 352 (498)
T KOG4237|consen 325 KTLSLYD-NQITTVAPGAFQTL-FSLSTLN 352 (498)
T ss_pred eeeeecC-CeeEEEeccccccc-ceeeeee
Confidence 9999987 478887 4443333 5555443
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=1.1e-10 Score=98.42 Aligned_cols=136 Identities=26% Similarity=0.307 Sum_probs=53.8
Q ss_pred ccCCCccCCccceEEEccCCcccccCCCC-CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccc
Q 045968 32 KEAPDVKGWENVRRLSLMQNQIETVSEVP-TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMS 110 (402)
Q Consensus 32 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~ 110 (402)
..++......+++.|++.++.|+.+.... .+.+|+.|++++| .+..++. +..++.|+.|++++| .++.+...+.
T Consensus 10 ~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N--~I~~i~~~l~ 84 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNN--RISSISEGLD 84 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS-----S-CHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCC--CCCccccchH
Confidence 34455555567889999999999887775 6889999999988 8888765 788899999999999 8888865553
Q ss_pred -cccccccEEEecCCCCcccc--HhhhcCCCCcEEEccCCCCccccc---hhhhhCCCCCcEEEeeeecc
Q 045968 111 -VLGSSLELLDISCTGITELP--EELKKLVNLKCLNLRWTGALIRIP---RQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 111 -~l~~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~ 174 (402)
.++ +|++|++++|++..+. ..+..+++|+.|++.+| -+...+ ..++..+++|+.|+-.....
T Consensus 85 ~~lp-~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 85 KNLP-NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HH-T-T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred HhCC-cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEccH
Confidence 466 9999999999887653 34778899999999984 444332 23477899999998665443
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.1e-10 Score=98.42 Aligned_cols=140 Identities=28% Similarity=0.311 Sum_probs=48.5
Q ss_pred CCcccccCCCCCCCccceEeccccccccccchHHhc-cCCCCCEEEccCCCccccccccccccccccccEEEecCCCCcc
Q 045968 50 QNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQ-LMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITE 128 (402)
Q Consensus 50 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~ 128 (402)
.+-|+.++.......+++|++.+| .+..+.. +. .+.+|+.|++++| .++.+. .+..+. +|++|++++|.+.+
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n-~I~~Ie~--L~~~l~~L~~L~Ls~N--~I~~l~-~l~~L~-~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGN-QISTIEN--LGATLDKLEVLDLSNN--QITKLE-GLPGLP-RLKTLDLSNNRISS 78 (175)
T ss_dssp -------------------------------S----TT-TT--EEE-TTS----S--T-T----T-T--EEE--SS---S
T ss_pred cccccccccccccccccccccccc-ccccccc--hhhhhcCCCEEECCCC--CCcccc-CccChh-hhhhcccCCCCCCc
Confidence 344555555566667788888877 6666643 44 4677888888888 777764 455666 88888888888887
Q ss_pred ccHhh-hcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceE
Q 045968 129 LPEEL-KKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVL 206 (402)
Q Consensus 129 lp~~i-~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 206 (402)
++..+ ..+++|++|++++ +.+.++.. ..+..+++|++|++.+|..... ...-...+..+|+|+.|
T Consensus 79 i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~------------~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK------------KNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp -CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS------------TTHHHHHHHH-TT-SEE
T ss_pred cccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccch------------hhHHHHHHHHcChhhee
Confidence 76554 3578888888877 56655432 2367788888888888777532 22334456667777777
Q ss_pred EEE
Q 045968 207 ELS 209 (402)
Q Consensus 207 ~l~ 209 (402)
+-.
T Consensus 146 D~~ 148 (175)
T PF14580_consen 146 DGQ 148 (175)
T ss_dssp TTE
T ss_pred CCE
Confidence 765
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4e-11 Score=111.14 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=117.1
Q ss_pred CccCCccceEEEccCCcccccC---CCCCCCccceEeccccccccc--cchHHhccCCCCCEEEccCCCcccccccccc-
Q 045968 36 DVKGWENVRRLSLMQNQIETVS---EVPTCPHLLTLFLDFNQELEM--IADGFFQLMPSLKVLKMSNCGQGRLKLPVGM- 109 (402)
Q Consensus 36 ~~~~~~~l~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~- 109 (402)
+-+.+.+||.+.+.++.+...+ ....|++++.|+++.| -+.. .-..++.++|+|+.|+++.| .+.....+.
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N--rl~~~~~s~~ 192 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN--RLSNFISSNT 192 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc--cccCCccccc
Confidence 3456678999999998887766 3488999999999988 3332 22456899999999999999 666542221
Q ss_pred -ccccccccEEEecCCCCc--cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccc
Q 045968 110 -SVLGSSLELLDISCTGIT--ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVL 186 (402)
Q Consensus 110 -~~l~~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 186 (402)
..+. +|+.|.++.|+++ ++...+..+++|+.|++..+..+.....+ -.-+..|++|+++++.+..
T Consensus 193 ~~~l~-~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~---------- 260 (505)
T KOG3207|consen 193 TLLLS-HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID---------- 260 (505)
T ss_pred hhhhh-hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc----------
Confidence 2344 9999999999987 33334668899999999996433222211 3447789999999998863
Q ss_pred cCCcchhhHhhhcCCCCceEEEEecCchhhH
Q 045968 187 FGGGEVLIQELLGLKYLEVLELSLGSYHALQ 217 (402)
Q Consensus 187 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 217 (402)
.......+.++.|+.|.++.++..++.
T Consensus 261 ----~~~~~~~~~l~~L~~Lnls~tgi~si~ 287 (505)
T KOG3207|consen 261 ----FDQGYKVGTLPGLNQLNLSSTGIASIA 287 (505)
T ss_pred ----cccccccccccchhhhhccccCcchhc
Confidence 233445778888888888866655443
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.96 E-value=6.2e-11 Score=109.30 Aligned_cols=91 Identities=18% Similarity=0.287 Sum_probs=64.0
Q ss_pred ccccccEEecccccCcccCc--ccc-cCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccc
Q 045968 258 VFRNLHRVTMVLCHKLKDVT--FLV-FAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLES 334 (402)
Q Consensus 258 ~~~~L~~L~l~~~~~l~~l~--~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 334 (402)
++++|+.|.++.|.++++.. .++ +.+.|+.+++.+|....+- ........+|.|+.|.+++|..+.+
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~----------tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG----------TLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh----------hHhhhccCCchhccCChhhhhhhhh
Confidence 57888888888887777743 333 5678888888887776554 2334567788888888888876654
Q ss_pred c-----ccCccCCCCccEEEecCCCCCCC
Q 045968 335 I-----YWKPLPFTRLKEMAVLGCDQLEK 358 (402)
Q Consensus 335 i-----~~~~~~~~~L~~L~i~~c~~L~~ 358 (402)
- .....+...|..+.+.+||.++.
T Consensus 388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 388 EGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred hhhhhhhhccccccccceeeecCCCCchH
Confidence 4 23344567788888888887764
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.6e-11 Score=105.66 Aligned_cols=182 Identities=21% Similarity=0.166 Sum_probs=87.7
Q ss_pred cccEEEecCCCCc--cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcch
Q 045968 115 SLELLDISCTGIT--ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEV 192 (402)
Q Consensus 115 ~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (402)
.|++|||+...++ .+--.+..+.+|+.|.+.+...-.++... +.+-.+|+.|+++.|.... ...
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-------------~n~ 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-------------ENA 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc-------------hhH
Confidence 4777777766554 23223556667777777663222334433 5666677777777666542 111
Q ss_pred hhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--eeeeEeccccccccCCCCccccccccEEecccc
Q 045968 193 LIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLC 270 (402)
Q Consensus 193 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~ 270 (402)
.-..+.+++.|..|+++||.......-.....-...|.+|+++++ ++..=++.. .. . .+++|.+|++++|
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-----L~--~-rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-----LV--R-RCPNLVHLDLSDS 323 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-----HH--H-hCCceeeeccccc
Confidence 222345566666777776654332221111112223333333333 111111100 00 1 4666666666666
Q ss_pred cCccc--CcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcc
Q 045968 271 HKLKD--VTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDL 329 (402)
Q Consensus 271 ~~l~~--l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 329 (402)
..+++ +..+.+|+.|++|.++.|..+.- +..-.+...|.|.+|++.+|
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p-----------~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIP-----------ETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCCCh-----------HHeeeeccCcceEEEEeccc
Confidence 54544 22445566666666666654321 11223455566666666554
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.92 E-value=7.1e-11 Score=108.95 Aligned_cols=285 Identities=16% Similarity=0.155 Sum_probs=161.1
Q ss_pred cceEEEccCCcccccCCC----CCCCccceEeccccccccccc-hHHhccCCCCCEEEccCCCcccccc-cccc-ccccc
Q 045968 42 NVRRLSLMQNQIETVSEV----PTCPHLLTLFLDFNQELEMIA-DGFFQLMPSLKVLKMSNCGQGRLKL-PVGM-SVLGS 114 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~-~~l~~ 114 (402)
.++.|++.++.-...... ..+|++++|.+.+|..+++.. .++-..|++|+++++..|. .+++. -..+ ..++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~-~iT~~~Lk~la~gC~- 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS-SITDVSLKYLAEGCR- 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc-hhHHHHHHHHHHhhh-
Confidence 678899888743322222 789999999999998777633 3445779999999999986 67754 2222 3456
Q ss_pred cccEEEecCC-CCcc--ccHhhhcCCCCcEEEccCCCCccccchh-hhhCCCCCcEEEeeeecccccccCCCcccccCCc
Q 045968 115 SLELLDISCT-GITE--LPEELKKLVNLKCLNLRWTGALIRIPRQ-LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGG 190 (402)
Q Consensus 115 ~L~~L~L~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 190 (402)
+|++|++++| .+.. +-.....+.+++.+...+|.....-... +=..+..+..+++..|...+ +
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT-------------D 283 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT-------------D 283 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-------------c
Confidence 9999999997 3432 3233455666777777777443321110 01234445556665665442 2
Q ss_pred chhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEecccccccc---CCCCccccccccEEec
Q 045968 191 EVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVR---KRREPFVFRNLHRVTM 267 (402)
Q Consensus 191 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~---~~~~~~~~~~L~~L~l 267 (402)
.....--..+..|+.|..+.+.......+.+..+.+.+ |+.+.+..|...+ +.+....++.|+.+++
T Consensus 284 ~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~----------L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 284 EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN----------LQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc----------eEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 22222223355666666664443333334444444443 3344444333211 1111115677777777
Q ss_pred ccccCcccC---cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccC-ccCCC
Q 045968 268 VLCHKLKDV---TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWK-PLPFT 343 (402)
Q Consensus 268 ~~~~~l~~l---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~ 343 (402)
..|-.+++- ....+++.|+.|.++.|..+++.... ...........|+.+.+++|+.+.+-... .-.++
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~-------~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR-------HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh-------hhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 777444442 12235677777777777776655210 11123345566777777777766443322 23367
Q ss_pred CccEEEecCCCCCCC
Q 045968 344 RLKEMAVLGCDQLEK 358 (402)
Q Consensus 344 ~L~~L~i~~c~~L~~ 358 (402)
+|+.+++..|....+
T Consensus 427 ~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 427 NLERIELIDCQDVTK 441 (483)
T ss_pred ccceeeeechhhhhh
Confidence 777777766666554
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.5e-09 Score=100.89 Aligned_cols=182 Identities=18% Similarity=0.154 Sum_probs=85.0
Q ss_pred ccCCCCCEEEccCCCcccccccc--ccccccccccEEEecCCCCccc---cHhhhcCCCCcEEEccCCCCccccc-hhhh
Q 045968 85 QLMPSLKVLKMSNCGQGRLKLPV--GMSVLGSSLELLDISCTGITEL---PEELKKLVNLKCLNLRWTGALIRIP-RQLI 158 (402)
Q Consensus 85 ~~l~~L~~L~l~~~~~~i~~l~~--~~~~l~~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~~~-~~~l 158 (402)
.++++|++..+.++ .+...+. ....++ +++.||+++|-+..+ -..+..+++|+.|+++. |.+.... ...-
T Consensus 118 sn~kkL~~IsLdn~--~V~~~~~~~~~k~~~-~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNY--RVEDAGIEEYSKILP-NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTT 193 (505)
T ss_pred hhHHhhhheeecCc--cccccchhhhhhhCC-cceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccch
Confidence 34455666666666 4544432 233344 666666666644322 22244566666666666 3333211 1111
Q ss_pred hCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccce
Q 045968 159 SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFE 238 (402)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 238 (402)
..++.|+.|.+..|.+.|. ....-+..+|.|+.|.+..+...-+ .....+-...|+.|+|++++
T Consensus 194 ~~l~~lK~L~l~~CGls~k--------------~V~~~~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWK--------------DVQWILLTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNN 257 (505)
T ss_pred hhhhhhheEEeccCCCCHH--------------HHHHHHHhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCc
Confidence 2355666666666666421 1222344456666666554321111 11111112233333333332
Q ss_pred eeeEeccccccccCCCCccccccccEEecccccCcccCc--c------cccCCCCCEEeecCCcc
Q 045968 239 LEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT--F------LVFAPNLKSLDLDGCDA 295 (402)
Q Consensus 239 L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~------~~~l~~L~~L~l~~c~~ 295 (402)
+.+++.- +..+.++.|+.|.++.| ++.++. . ...+++|++|++..|+.
T Consensus 258 li~~~~~--------~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 258 LIDFDQG--------YKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccccccc--------cccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence 2222110 11126777777777776 566542 1 24567777777777655
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=1.6e-09 Score=96.13 Aligned_cols=106 Identities=25% Similarity=0.239 Sum_probs=49.7
Q ss_pred CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCc
Q 045968 61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLK 140 (402)
Q Consensus 61 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~ 140 (402)
.++.|+++++++| .+..+..+ .+-.|.+|.|+++.| .+..+.. +..+. +|++||+++|.+.++.-+-..+.|++
T Consensus 282 TWq~LtelDLS~N-~I~~iDES-vKL~Pkir~L~lS~N--~i~~v~n-La~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQIDES-VKLAPKLRRLILSQN--RIRTVQN-LAELP-QLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred hHhhhhhcccccc-chhhhhhh-hhhccceeEEecccc--ceeeehh-hhhcc-cceEeecccchhHhhhhhHhhhcCEe
Confidence 3444555555554 44444444 444555555555555 4443322 33344 55555555554444433333444555
Q ss_pred EEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 141 CLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 141 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
.|.+.+ |.++.+.- ++++-+|..|++.++.+.
T Consensus 356 tL~La~-N~iE~LSG--L~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 356 TLKLAQ-NKIETLSG--LRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred eeehhh-hhHhhhhh--hHhhhhheeccccccchh
Confidence 555555 34444432 444455555555555443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=3.4e-09 Score=94.10 Aligned_cols=132 Identities=20% Similarity=0.200 Sum_probs=96.4
Q ss_pred hccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCC
Q 045968 84 FQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSR 163 (402)
Q Consensus 84 ~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 163 (402)
+...+.|+.+++++| .|+.+..++.-.+ .++.|+++.|++..+.. +..+++|.+||+++ |.++.+.-. =.++.|
T Consensus 280 ~dTWq~LtelDLS~N--~I~~iDESvKL~P-kir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gw-h~KLGN 353 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN--LITQIDESVKLAP-KLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGW-HLKLGN 353 (490)
T ss_pred cchHhhhhhcccccc--chhhhhhhhhhcc-ceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhh-HhhhcC
Confidence 344567899999999 8888877776555 99999999998887754 88889999999988 677766542 346788
Q ss_pred CcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEecccee
Q 045968 164 LRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFEL 239 (402)
Q Consensus 164 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L 239 (402)
.++|.+.++.+. .+..+.++-.|..|++.++..+..+...+... .++|+.+.+.+|.|
T Consensus 354 IKtL~La~N~iE-----------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~-LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 354 IKTLKLAQNKIE-----------------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGN-LPCLETLRLTGNPL 411 (490)
T ss_pred EeeeehhhhhHh-----------------hhhhhHhhhhheeccccccchhhHHHhccccc-ccHHHHHhhcCCCc
Confidence 888888887764 34556667777788888777766666554443 45777776666643
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.67 E-value=9.2e-10 Score=105.33 Aligned_cols=169 Identities=24% Similarity=0.280 Sum_probs=131.9
Q ss_pred ccceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEE
Q 045968 41 ENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELL 119 (402)
Q Consensus 41 ~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L 119 (402)
......+++.|.+.++|.- ..|..|..+.+..| .+..+|.. +..+..|.+|+++.| .++.+|..++.++ |+.|
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~-i~~L~~lt~l~ls~N--qlS~lp~~lC~lp--Lkvl 148 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEA-ICNLEALTFLDLSSN--QLSHLPDGLCDLP--LKVL 148 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchh-hhhhhHHHHhhhccc--hhhcCChhhhcCc--ceeE
Confidence 3455677778877777755 67788888888877 77778877 888999999999999 8999988888876 9999
Q ss_pred EecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968 120 DISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG 199 (402)
Q Consensus 120 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (402)
-+++|++..+|..++.+.+|..|+.+. +.+..+|.. ++++.+|+.|++..+.... ...++..
T Consensus 149 i~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l~~----------------lp~El~~ 210 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHLED----------------LPEELCS 210 (722)
T ss_pred EEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhhhh----------------CCHHHhC
Confidence 999999999999999889999999988 578888886 8899999999988887753 3345555
Q ss_pred CCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc
Q 045968 200 LKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF 237 (402)
Q Consensus 200 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 237 (402)
|+ |..|+++++.... ++.....+++|+.|-|++|
T Consensus 211 Lp-Li~lDfScNkis~---iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 211 LP-LIRLDFSCNKISY---LPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred Cc-eeeeecccCceee---cchhhhhhhhheeeeeccC
Confidence 55 6778887555444 4444555667777777776
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.65 E-value=2.3e-08 Score=90.68 Aligned_cols=242 Identities=18% Similarity=0.198 Sum_probs=139.3
Q ss_pred CCccCCccceEEEccCCcccc-----c-CCCCCCCccceEecccc--cc-ccccc------hHHhccCCCCCEEEccCCC
Q 045968 35 PDVKGWENVRRLSLMQNQIET-----V-SEVPTCPHLLTLFLDFN--QE-LEMIA------DGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 35 ~~~~~~~~l~~L~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~--~~-l~~~~------~~~~~~l~~L~~L~l~~~~ 99 (402)
+.......+..+++++|.+-. + +.+...++|+..++++- .. ...+| ...+..+++|++++|++|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 455566788889999986642 2 22256668888877653 11 12233 2335777889999999885
Q ss_pred cccccc---ccccccccccccEEEecCCCCccccH--------------hhhcCCCCcEEEccCCCCccccch----hhh
Q 045968 100 QGRLKL---PVGMSVLGSSLELLDISCTGITELPE--------------ELKKLVNLKCLNLRWTGALIRIPR----QLI 158 (402)
Q Consensus 100 ~~i~~l---~~~~~~l~~~L~~L~L~~~~l~~lp~--------------~i~~l~~L~~L~l~~~~~~~~~~~----~~l 158 (402)
|....+ -.-+..+. .|++|.|.+|++....- .+..-++|+.+.... |.+.+.+. .++
T Consensus 104 ~G~~g~~~l~~ll~s~~-~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCT-DLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAF 181 (382)
T ss_pred cCccchHHHHHHHHhcc-CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHH
Confidence 333332 12245566 88888888887763211 123446788887777 55555432 235
Q ss_pred hCCCCCcEEEeeeecccccccCCCcccccCCcc-hhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc
Q 045968 159 SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGE-VLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF 237 (402)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 237 (402)
...+.|+.+++..+.+... +. .....+..+++|+.|++..+-...-....-.
T Consensus 182 ~~~~~leevr~~qN~I~~e------------G~~al~eal~~~~~LevLdl~DNtft~egs~~La--------------- 234 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPE------------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA--------------- 234 (382)
T ss_pred HhccccceEEEecccccCc------------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHH---------------
Confidence 6677888888877776531 22 2345577778888877764322211110000
Q ss_pred eeeeEeccccccccCCCCccccccccEEecccccCcccC------ccc-ccCCCCCEEeecCCcchHHHhhcCCCCCCcc
Q 045968 238 ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV------TFL-VFAPNLKSLDLDGCDAMEEIISVGKFAETPE 310 (402)
Q Consensus 238 ~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l------~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 310 (402)
... + .+++|+.|++++| .+.+- ..+ ..+|.|+.|.+.+|..-.+-.. .
T Consensus 235 -------------kaL--~-s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~--------~ 289 (382)
T KOG1909|consen 235 -------------KAL--S-SWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL--------A 289 (382)
T ss_pred -------------HHh--c-ccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH--------H
Confidence 001 1 5667888888888 55542 111 2467888888877655433321 1
Q ss_pred ccCCCCCCCccceeecCccc
Q 045968 311 MMGHISPFENLQRLNLEDLP 330 (402)
Q Consensus 311 ~~~~~~~l~~L~~L~l~~c~ 330 (402)
........|.|+.|.|++|.
T Consensus 290 la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHhcchhhHHhcCCccc
Confidence 11233446777777777653
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=3.8e-08 Score=95.57 Aligned_cols=120 Identities=30% Similarity=0.383 Sum_probs=63.6
Q ss_pred EEccCCcc-cccCCCCCCCccceEeccccccccccchHHhccCC-CCCEEEccCCCccccccccccccccccccEEEecC
Q 045968 46 LSLMQNQI-ETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMP-SLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISC 123 (402)
Q Consensus 46 L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~-~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~ 123 (402)
+....+.+ .........+.++.+.+.++ .+.++++. ..... +|+.|+++++ .+..+|..+..++ +|+.|+++.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N--~i~~l~~~~~~l~-~L~~L~l~~ 172 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDN--KIESLPSPLRNLP-NLKNLDLSF 172 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCc-ccccCccc-cccchhhccccccccc--chhhhhhhhhccc-cccccccCC
Confidence 44444443 22333344455556655555 55555553 33332 5666666666 5555554455555 666666666
Q ss_pred CCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeee
Q 045968 124 TGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI 172 (402)
Q Consensus 124 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 172 (402)
|.+..+|...+..++|+.|++++ +.++.+|.. +.....|++|.+..+
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccC-CccccCchh-hhhhhhhhhhhhcCC
Confidence 66666655554556666666666 455555553 334444666655555
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.7e-09 Score=93.80 Aligned_cols=184 Identities=19% Similarity=0.173 Sum_probs=121.4
Q ss_pred CCcEEEccCCCCcccc-chhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhh
Q 045968 138 NLKCLNLRWTGALIRI-PRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHAL 216 (402)
Q Consensus 138 ~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 216 (402)
.|+++|++. ..++.- -...++.|.+|+.|.+.+... ++.....+..-.+|+.|+++++..-.-
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~L---------------dD~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRL---------------DDPIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhcccccccc---------------CcHHHHHHhccccceeeccccccccch
Confidence 588999988 455541 123477899999999998887 556777888889999999997654333
Q ss_pred HhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccC-c--ccCcc-cccCCCCCEEeecC
Q 045968 217 QILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHK-L--KDVTF-LVFAPNLKSLDLDG 292 (402)
Q Consensus 217 ~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l--~~l~~-~~~l~~L~~L~l~~ 292 (402)
.........++.|..|++++|.+..=.+ +..-.. --++|+.|++++|.. + .++.. ...+|+|.+||+++
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~l~~~~V------tv~V~h-ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCFLFTEKV------TVAVAH-ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhhccchhh------hHHHhh-hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 3333334445555555444442211111 111111 357899999999843 2 22333 34799999999999
Q ss_pred CcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccc-ccccCccCCCCccEEEecCCCC
Q 045968 293 CDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE-SIYWKPLPFTRLKEMAVLGCDQ 355 (402)
Q Consensus 293 c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~i~~~~~~~~~L~~L~i~~c~~ 355 (402)
|..++.-.. ..+-.|+.|++|.+++|-.+. .-.......|+|.+|++.+|-.
T Consensus 323 ~v~l~~~~~-----------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 323 SVMLKNDCF-----------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccCchHH-----------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 998876432 356789999999999997651 1112334579999999987754
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=6e-08 Score=94.16 Aligned_cols=193 Identities=27% Similarity=0.332 Sum_probs=131.1
Q ss_pred eEeccccccc-cccchHHhccCCCCCEEEccCCCccccccccccccc-cccccEEEecCCCCccccHhhhcCCCCcEEEc
Q 045968 67 TLFLDFNQEL-EMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVL-GSSLELLDISCTGITELPEELKKLVNLKCLNL 144 (402)
Q Consensus 67 ~L~l~~~~~l-~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l-~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 144 (402)
.+....+ .+ .++.. +...+.+..|++.++ .+.+++...... . +|+.|++++|.+..+|..++.+++|+.|++
T Consensus 97 ~l~~~~~-~~~~~~~~--~~~~~~l~~L~l~~n--~i~~i~~~~~~~~~-nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLN-RLRSNISE--LLELTNLTSLDLDNN--NITDIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKNLDL 170 (394)
T ss_pred eeecccc-ccccCchh--hhcccceeEEecCCc--ccccCccccccchh-hcccccccccchhhhhhhhhcccccccccc
Confidence 4666665 33 33333 566788999999999 899987766655 4 899999999999999888999999999999
Q ss_pred cCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhh
Q 045968 145 RWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNK 224 (402)
Q Consensus 145 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 224 (402)
.. +.+.+++.. ....++|+.|+++++.+...+ .......+|+++.+..+...... ....
T Consensus 171 ~~-N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~----------------~~~~~~~~L~~l~~~~N~~~~~~---~~~~ 229 (394)
T COG4886 171 SF-NDLSDLPKL-LSNLSNLNNLDLSGNKISDLP----------------PEIELLSALEELDLSNNSIIELL---SSLS 229 (394)
T ss_pred CC-chhhhhhhh-hhhhhhhhheeccCCccccCc----------------hhhhhhhhhhhhhhcCCcceecc---hhhh
Confidence 99 688999874 448999999999999886321 11133444777777655311111 1111
Q ss_pred hcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCCcchH
Q 045968 225 LKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAME 297 (402)
Q Consensus 225 ~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~ 297 (402)
... ++..+.+.+......+.....++.++.|+++++ .+++++.++.+.+|+.|+++++....
T Consensus 230 ~~~----------~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 230 NLK----------NLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hcc----------cccccccCCceeeeccchhccccccceeccccc-cccccccccccCccCEEeccCccccc
Confidence 111 233333333332221111115777999999888 78888878888999999998865543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=8.4e-08 Score=66.51 Aligned_cols=59 Identities=34% Similarity=0.450 Sum_probs=34.1
Q ss_pred CccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecCCC
Q 045968 63 PHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTG 125 (402)
Q Consensus 63 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~ 125 (402)
|+|++|.+++| .+..++...|..+++|++|++++| .++.+ +..|..++ +|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N--~l~~i~~~~f~~l~-~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN--NLTSIPPDAFSNLP-NLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS--SESEEETTTTTTST-TESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC--ccCccCHHHHcCCC-CCCEEeCcCCc
Confidence 35566666655 555665555666666666666666 55555 33455555 66666666554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.49 E-value=1.1e-07 Score=65.88 Aligned_cols=59 Identities=34% Similarity=0.501 Sum_probs=34.4
Q ss_pred ccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeec
Q 045968 114 SSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIG 173 (402)
Q Consensus 114 ~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 173 (402)
|+|++|++++|++..+|.. +..+++|++|++++ +.++.++..++.++++|++|++.+|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3566666666666655543 45566666666665 45555555556666666666665553
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.42 E-value=3.6e-08 Score=94.69 Aligned_cols=133 Identities=24% Similarity=0.319 Sum_probs=105.4
Q ss_pred CccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccccccccc
Q 045968 36 DVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSS 115 (402)
Q Consensus 36 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~ 115 (402)
.+..+..+..++++.|.+..+|.-.+..-|+.|.++.| ++..+|.. ++..+.|..|+.+.| .+..+|..++.+. +
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~n--ei~slpsql~~l~-s 190 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKN--EIQSLPSQLGYLT-S 190 (722)
T ss_pred hhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecC-ccccCCcc-cccchhHHHhhhhhh--hhhhchHHhhhHH-H
Confidence 34555667777888888887777777777888888866 77777777 677788888888888 7888888888888 8
Q ss_pred ccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccc
Q 045968 116 LELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR 176 (402)
Q Consensus 116 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 176 (402)
|+.|++..|.+..+|..+. .-.|..||++. |++..+|.. +++|..|++|-+..|...+
T Consensus 191 lr~l~vrRn~l~~lp~El~-~LpLi~lDfSc-Nkis~iPv~-fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEELC-SLPLIRLDFSC-NKISYLPVD-FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHhhhhhhhCCHHHh-CCceeeeeccc-Cceeecchh-hhhhhhheeeeeccCCCCC
Confidence 8888888888888888877 44688888876 788888887 8889999999888887653
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.30 E-value=8.3e-08 Score=93.63 Aligned_cols=106 Identities=27% Similarity=0.271 Sum_probs=68.9
Q ss_pred CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCc
Q 045968 61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLK 140 (402)
Q Consensus 61 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~ 140 (402)
.+..++.+.+..+ .+..+... +..+++|+.|++.+| .+..+...+..+. +|++|++++|.|..+ .++..++.|+
T Consensus 70 ~l~~l~~l~l~~n-~i~~~~~~-l~~~~~l~~l~l~~n--~i~~i~~~l~~~~-~L~~L~ls~N~I~~i-~~l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAKILNH-LSKLKSLEALDLYDN--KIEKIENLLSSLV-NLQVLDLSFNKITKL-EGLSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchh-hhhhhhcc-cccccceeeeecccc--chhhcccchhhhh-cchheeccccccccc-cchhhccchh
Confidence 4455555555555 44442222 566777777777777 6776644355566 777777777777766 4566666777
Q ss_pred EEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 141 CLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 141 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
.|++.+ |.++.+.. +..+++|+.+++.++.+.
T Consensus 144 ~L~l~~-N~i~~~~~--~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 144 ELNLSG-NLISDISG--LESLKSLKLLDLSYNRIV 175 (414)
T ss_pred hheecc-CcchhccC--CccchhhhcccCCcchhh
Confidence 777777 56666654 556777777777777664
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=2.2e-07 Score=82.66 Aligned_cols=209 Identities=16% Similarity=0.114 Sum_probs=117.9
Q ss_pred ccCCCCCEEEccCCCcccccccc---ccccccccccEEEecCCCCc----cccHhhhcCCCCcEEEccCCCC-ccccchh
Q 045968 85 QLMPSLKVLKMSNCGQGRLKLPV---GMSVLGSSLELLDISCTGIT----ELPEELKKLVNLKCLNLRWTGA-LIRIPRQ 156 (402)
Q Consensus 85 ~~l~~L~~L~l~~~~~~i~~l~~---~~~~l~~~L~~L~L~~~~l~----~lp~~i~~l~~L~~L~l~~~~~-~~~~~~~ 156 (402)
..+..++.+++.+| .++++.. -+.+++ .|++|+++.|.+. ++| ....+|+.|-+.++.. ++....
T Consensus 68 ~~~~~v~elDL~~N--~iSdWseI~~ile~lP-~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s- 140 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN--LISDWSEIGAILEQLP-ALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTS- 140 (418)
T ss_pred HHhhhhhhhhcccc--hhccHHHHHHHHhcCc-cceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhh-
Confidence 44667777777777 6765532 223444 7777777777554 333 2335777777777432 222332
Q ss_pred hhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEecc
Q 045968 157 LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDG 236 (402)
Q Consensus 157 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 236 (402)
.+..++.+++|+++.|....... +....+. --+.+++|++..|............+..+++..+.+..
T Consensus 141 ~l~~lP~vtelHmS~N~~rq~n~----------Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSLRQLNL----------DDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred hhhcchhhhhhhhccchhhhhcc----------ccccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence 26677777888777775432110 1111111 12345666666555554444444555555666665555
Q ss_pred ceeeeEeccccccccCCCCccccccccEEecccccCccc---CcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccC
Q 045968 237 FELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKD---VTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMG 313 (402)
Q Consensus 237 ~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 313 (402)
|.|+++.-.. . .+.+|.+-.|.++.. ++.+ +..+..++.|.-|.+.+++..+.+..+ ++ -.-
T Consensus 209 ~PlK~~s~ek--~------se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~----er--r~l 273 (418)
T KOG2982|consen 209 GPLKTESSEK--G------SEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG----ER--RFL 273 (418)
T ss_pred Ccccchhhcc--c------CCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCC----cc--eEE
Confidence 5555442211 1 114666667777665 5555 457788999999999998877655321 10 012
Q ss_pred CCCCCCccceeecC
Q 045968 314 HISPFENLQRLNLE 327 (402)
Q Consensus 314 ~~~~l~~L~~L~l~ 327 (402)
.++.+++++.|+=+
T Consensus 274 lIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 274 LIARLTKVQVLNGS 287 (418)
T ss_pred EEeeccceEEecCc
Confidence 56778888887533
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=1.4e-07 Score=92.08 Aligned_cols=127 Identities=27% Similarity=0.341 Sum_probs=91.0
Q ss_pred CccceEEEccCCccccc-CCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccE
Q 045968 40 WENVRRLSLMQNQIETV-SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLEL 118 (402)
Q Consensus 40 ~~~l~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~ 118 (402)
+..++.+.+..+.+..+ .....+++|..+++.+| .+..+... +..+++|++|++++| .|+.+. .+..+. .|+.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~-l~~~~~L~~L~ls~N--~I~~i~-~l~~l~-~L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENL-LSSLVNLQVLDLSFN--KITKLE-GLSTLT-LLKE 144 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccc-hhhhhcchheecccc--cccccc-chhhcc-chhh
Confidence 45566666777777763 33577888888888877 66666554 567888888888888 787763 345566 7888
Q ss_pred EEecCCCCccccHhhhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeeccc
Q 045968 119 LDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 119 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 175 (402)
|++++|.+..+ ..+..+.+|+.+++++ +.+..+.. . ...+.+++.+.+.++.+.
T Consensus 145 L~l~~N~i~~~-~~~~~l~~L~~l~l~~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 145 LNLSGNLISDI-SGLESLKSLKLLDLSY-NRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred heeccCcchhc-cCCccchhhhcccCCc-chhhhhhhhh-hhhccchHHHhccCCchh
Confidence 88888888766 3455578888888888 56666654 2 367788888888877765
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.16 E-value=1.2e-06 Score=79.66 Aligned_cols=13 Identities=8% Similarity=-0.000 Sum_probs=8.3
Q ss_pred ccccccEEecccc
Q 045968 258 VFRNLHRVTMVLC 270 (402)
Q Consensus 258 ~~~~L~~L~l~~~ 270 (402)
..+.|+.|.+++|
T Consensus 296 ek~dL~kLnLngN 308 (382)
T KOG1909|consen 296 EKPDLEKLNLNGN 308 (382)
T ss_pred cchhhHHhcCCcc
Confidence 3566666666666
No 46
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.08 E-value=1.3e-06 Score=86.87 Aligned_cols=240 Identities=24% Similarity=0.232 Sum_probs=119.7
Q ss_pred hccCCCCCEEEccCCCccccc--cccccccccccccEEEecCC--CCcccc----HhhhcCCCCcEEEccCCCCccccch
Q 045968 84 FQLMPSLKVLKMSNCGQGRLK--LPVGMSVLGSSLELLDISCT--GITELP----EELKKLVNLKCLNLRWTGALIRIPR 155 (402)
Q Consensus 84 ~~~l~~L~~L~l~~~~~~i~~--l~~~~~~l~~~L~~L~L~~~--~l~~lp----~~i~~l~~L~~L~l~~~~~~~~~~~ 155 (402)
...+++|+.+.+..|. .+.. +-.....++ +|+.|+++++ .....+ .....+.+|+.+++..|..+++...
T Consensus 184 ~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCS-KITDDSLDALALKCP-NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred HhhCchhhHhhhcccc-cCChhhHHHHHhhCc-hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 4456778888777774 4444 222233444 7888888763 111111 1234557788888887765666544
Q ss_pred hhhh-CCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEe
Q 045968 156 QLIS-KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCL 234 (402)
Q Consensus 156 ~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 234 (402)
..+. .+++|++|.+..|.... +.....-...++.|+.|+++++.......+......+++++.+.+
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt-------------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLT-------------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHHHhhCCCcceEccCCCCccc-------------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 3343 37788888876666421 333334445577788888876554433333333333444444332
Q ss_pred ccc----eeeeEeccccccccCCCCcccc-ccccEEecccccCcccCc--ccccCCCCC-EEeecCCcch-HHHhhcCCC
Q 045968 235 DGF----ELEELKIDYTEIVRKRREPFVF-RNLHRVTMVLCHKLKDVT--FLVFAPNLK-SLDLDGCDAM-EEIISVGKF 305 (402)
Q Consensus 235 ~~~----~L~~L~i~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~--~~~~l~~L~-~L~l~~c~~l-~~~~~~~~~ 305 (402)
..+ .++.+.+..+.. .. ..+..+.+.+|+.++++. ..+ ..... .+.+.+|+.+ ..+.
T Consensus 329 ~~~~~c~~l~~~~l~~~~~--------~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~----- 394 (482)
T KOG1947|consen 329 LSLNGCPSLTDLSLSGLLT--------LTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLE----- 394 (482)
T ss_pred hhcCCCccHHHHHHHHhhc--------cCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHH-----
Confidence 221 133333322211 11 123333333333333321 111 11111 4455666655 2221
Q ss_pred CCCccccCCCCCCCccceeecCccccccccccC--ccCCCCccEEEecCCCCCCCC
Q 045968 306 AETPEMMGHISPFENLQRLNLEDLPNLESIYWK--PLPFTRLKEMAVLGCDQLEKL 359 (402)
Q Consensus 306 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~--~~~~~~L~~L~i~~c~~L~~l 359 (402)
.....+..++.|.++.|.....-... ...+..++.+++.+|+.+...
T Consensus 395 -------~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 395 -------LRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred -------HHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 12233333788888887655333222 111567777777777776644
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.08 E-value=1.2e-05 Score=82.50 Aligned_cols=86 Identities=28% Similarity=0.424 Sum_probs=41.3
Q ss_pred cceEecccccccc-ccchHHhccCCCCCEEEccCCCcccc-ccccccccccccccEEEecCCCCc-cccHhhhcCCCCcE
Q 045968 65 LLTLFLDFNQELE-MIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLELLDISCTGIT-ELPEELKKLVNLKC 141 (402)
Q Consensus 65 L~~L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~~L~L~~~~l~-~lp~~i~~l~~L~~ 141 (402)
++.|++.+| .+. .+|.. +..+++|+.|++++| .+. .+|..++.+. +|++|++++|.+. .+|..++++++|+.
T Consensus 420 v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N--~l~g~iP~~~~~l~-~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGN--SIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCC-CccccCCHH-HhCCCCCCEEECCCC--cccCcCChHHhCCC-CCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 444445544 222 23333 455555555555555 444 3344455554 5555555555544 34555555555555
Q ss_pred EEccCCCCccccch
Q 045968 142 LNLRWTGALIRIPR 155 (402)
Q Consensus 142 L~l~~~~~~~~~~~ 155 (402)
|++++|.....+|.
T Consensus 495 L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 495 LNLNGNSLSGRVPA 508 (623)
T ss_pred EECcCCcccccCCh
Confidence 55555333233444
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.01 E-value=2.5e-07 Score=91.42 Aligned_cols=108 Identities=27% Similarity=0.274 Sum_probs=52.1
Q ss_pred hccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCC
Q 045968 84 FQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSR 163 (402)
Q Consensus 84 ~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 163 (402)
++-++.|+.|++++| ++.... .+..+. +|++|||+.|.+..+|..-..-.+|+.|.+++ |.++.+.. +.++.+
T Consensus 183 Lqll~ale~LnLshN--k~~~v~-~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~g--ie~Lks 255 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHN--KFTKVD-NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLRG--IENLKS 255 (1096)
T ss_pred HHHHHHhhhhccchh--hhhhhH-HHHhcc-cccccccccchhccccccchhhhhheeeeecc-cHHHhhhh--HHhhhh
Confidence 444455555555555 444443 344444 55555555555555443211112355555555 34444432 455555
Q ss_pred CcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecC
Q 045968 164 LRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGS 212 (402)
Q Consensus 164 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 212 (402)
|+.|++++|-+. ....+..+..+..|+.|.+.++.
T Consensus 256 L~~LDlsyNll~--------------~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 256 LYGLDLSYNLLS--------------EHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhccchhHhhhh--------------cchhhhHHHHHHHHHHHhhcCCc
Confidence 555555555443 22333444445555555555443
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=1.4e-05 Score=51.00 Aligned_cols=40 Identities=45% Similarity=0.580 Sum_probs=27.1
Q ss_pred cccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccch
Q 045968 115 SLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPR 155 (402)
Q Consensus 115 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 155 (402)
+|++|++++|++..+|..+.++++|+.|++++ +.+++++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCCcC
Confidence 67777777777777776677777777777777 46666553
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=2.3e-06 Score=76.37 Aligned_cols=225 Identities=18% Similarity=0.152 Sum_probs=126.0
Q ss_pred CCCEEEccCCCcccccc--ccccccccccccEEEecCCCCcc---ccHhhhcCCCCcEEEccCCCCccc-cchhhh-hCC
Q 045968 89 SLKVLKMSNCGQGRLKL--PVGMSVLGSSLELLDISCTGITE---LPEELKKLVNLKCLNLRWTGALIR-IPRQLI-SKF 161 (402)
Q Consensus 89 ~L~~L~l~~~~~~i~~l--~~~~~~l~~~L~~L~L~~~~l~~---lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~l-~~l 161 (402)
-++.|.+.+| .+... ...|+.....++.|||.+|.+.. +...+.+++.|++|+++.+ .+.. +.. + --.
T Consensus 46 a~ellvln~~--~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~--lp~p~ 120 (418)
T KOG2982|consen 46 ALELLVLNGS--IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKS--LPLPL 120 (418)
T ss_pred chhhheecCC--CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCcccc--Ccccc
Confidence 4556667777 55543 22233322389999999998874 4445789999999999884 4332 221 1 235
Q ss_pred CCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhh-hhhhhcccceeeEeccceee
Q 045968 162 SRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILL-SSNKLKSCIRSLCLDGFELE 240 (402)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~L~ 240 (402)
.+|+.|-+.+....|. ..-..+..+|.++.|+++.+....+..-. ......+ .+.
T Consensus 121 ~nl~~lVLNgT~L~w~--------------~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~----------~v~ 176 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWT--------------QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWST----------EVL 176 (418)
T ss_pred cceEEEEEcCCCCChh--------------hhhhhhhcchhhhhhhhccchhhhhccccccccccch----------hhh
Confidence 6889998888877652 12234666777777777644221110000 0000111 223
Q ss_pred eEeccccccccCCCC---ccccccccEEecccccCcccCc---ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCC
Q 045968 241 ELKIDYTEIVRKRRE---PFVFRNLHRVTMVLCHKLKDVT---FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGH 314 (402)
Q Consensus 241 ~L~i~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 314 (402)
+++...|...-|... ...||++..+.+..| -+++.. ....+|.+-.|.+..+. +.++ ...+.
T Consensus 177 tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~-PlK~~s~ek~se~~p~~~~LnL~~~~-idsw----------asvD~ 244 (418)
T KOG2982|consen 177 TLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG-PLKTESSEKGSEPFPSLSCLNLGANN-IDSW----------ASVDA 244 (418)
T ss_pred hhhcCCcHHHHHHHHHhHHhhcccchheeeecC-cccchhhcccCCCCCcchhhhhcccc-cccH----------HHHHH
Confidence 333333322111111 115888888888777 354442 34456777777777643 3333 23357
Q ss_pred CCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCC
Q 045968 315 ISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKL 359 (402)
Q Consensus 315 ~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~l 359 (402)
+.+||.|..|.+.+.|-+..+... .=+.|-|...++++-+
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l~~~-----err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPLRGG-----ERRFLLIARLTKVQVL 284 (418)
T ss_pred HcCCchhheeeccCCcccccccCC-----cceEEEEeeccceEEe
Confidence 788899999988888877665442 2234444444444444
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=9.9e-06 Score=83.09 Aligned_cols=31 Identities=42% Similarity=0.590 Sum_probs=14.8
Q ss_pred cccEEEecCCCCccccHhhhcCCCCcEEEccC
Q 045968 115 SLELLDISCTGITELPEELKKLVNLKCLNLRW 146 (402)
Q Consensus 115 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 146 (402)
+|..||+|++++..+ .+++++.+|+.|.+.+
T Consensus 174 NL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 174 NLRSLDISGTNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred ccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence 444555555444444 4444444444444443
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=1.1e-05 Score=82.76 Aligned_cols=105 Identities=24% Similarity=0.307 Sum_probs=83.6
Q ss_pred CCCCEEEccCCCcccc-ccccccccccccccEEEecCCCCc--cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCC
Q 045968 88 PSLKVLKMSNCGQGRL-KLPVGMSVLGSSLELLDISCTGIT--ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRL 164 (402)
Q Consensus 88 ~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 164 (402)
.+|++|++++.. .+. .+|..++.+.|.|+.|.+++-.+. ++-.-..+++||..|||++ .+++.+ .+ ++++++|
T Consensus 122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~G-IS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SG-ISRLKNL 197 (699)
T ss_pred HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HH-HhccccH
Confidence 579999999985 333 567778877779999999997554 2333467899999999999 577877 33 9999999
Q ss_pred cEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEe
Q 045968 165 RVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSL 210 (402)
Q Consensus 165 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 210 (402)
+.|.+.+-.+. ....+.++..|++|+.|+++.
T Consensus 198 q~L~mrnLe~e--------------~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 198 QVLSMRNLEFE--------------SYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HHHhccCCCCC--------------chhhHHHHhcccCCCeeeccc
Confidence 99999877765 445677899999999999984
No 53
>PLN03150 hypothetical protein; Provisional
Probab=97.85 E-value=5.2e-05 Score=77.74 Aligned_cols=107 Identities=21% Similarity=0.309 Sum_probs=86.2
Q ss_pred cceEEEccCCcccc-cCC-CCCCCccceEecccccccc-ccchHHhccCCCCCEEEccCCCcccc-cccccccccccccc
Q 045968 42 NVRRLSLMQNQIET-VSE-VPTCPHLLTLFLDFNQELE-MIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLE 117 (402)
Q Consensus 42 ~l~~L~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~ 117 (402)
.++.|++.++.+.. +|. +..+++|+.|++++| .+. .+|.. +..+++|+.|++++| .++ .+|..++.+. +|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N--~lsg~iP~~l~~L~-~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYN--SFNGSIPESLGQLT-SLR 493 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCC--CCCCCCchHHhcCC-CCC
Confidence 47889999998864 343 378999999999999 554 57766 899999999999999 787 5688899999 999
Q ss_pred EEEecCCCCc-cccHhhhcC-CCCcEEEccCCCCcccc
Q 045968 118 LLDISCTGIT-ELPEELKKL-VNLKCLNLRWTGALIRI 153 (402)
Q Consensus 118 ~L~L~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~~~~~ 153 (402)
+|++++|.+. .+|..+... .++..+++.+|..+...
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 9999999886 788887654 56788888886444333
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=2.5e-05 Score=49.81 Aligned_cols=38 Identities=34% Similarity=0.459 Sum_probs=21.6
Q ss_pred CCCEEEccCCCccccccccccccccccccEEEecCCCCccc
Q 045968 89 SLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITEL 129 (402)
Q Consensus 89 ~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~l 129 (402)
+|++|++++| .++++|..++.+. +|++|++++|.+.++
T Consensus 2 ~L~~L~l~~N--~i~~l~~~l~~l~-~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN--QITDLPPELSNLP-NLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSS--S-SSHGGHGTTCT-TSSEEEETSSCCSBE
T ss_pred cceEEEccCC--CCcccCchHhCCC-CCCEEEecCCCCCCC
Confidence 4566666666 5666655555555 666666666665554
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.75 E-value=4.6e-06 Score=66.09 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=62.4
Q ss_pred EEEccCCcccccCCC----CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEE
Q 045968 45 RLSLMQNQIETVSEV----PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120 (402)
Q Consensus 45 ~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~ 120 (402)
.++++.+.+-.+++. ....+|+..++++| .+.+.|+.+-.+++-++.|++.+| .++++|..+..++ .|+.|+
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n--eisdvPeE~Aam~-aLr~lN 106 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN--EISDVPEELAAMP-ALRSLN 106 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchh--hhhhchHHHhhhH-Hhhhcc
Confidence 344444444333322 44555666666666 666666665566666666666666 6666666665555 666666
Q ss_pred ecCCCCccccHhhhcCCCCcEEEccCCCCccccchh
Q 045968 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQ 156 (402)
Q Consensus 121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 156 (402)
++.|.+...|.-+..+.+|-.|+..+ +....+|..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence 66666666666655566666666655 444445443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=0.00011 Score=70.02 Aligned_cols=62 Identities=23% Similarity=0.354 Sum_probs=33.2
Q ss_pred CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCC-CCccccH
Q 045968 61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCT-GITELPE 131 (402)
Q Consensus 61 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~-~l~~lp~ 131 (402)
.+.+++.|++++| .+..+|. + ..+|+.|.+.+|. .++.+|..+ +++|++|++++| .+..+|.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~--L--P~sLtsL~Lsnc~-nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV--L--PNELTEITIENCN-NLTTLPGSI---PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC--C--CCCCcEEEccCCC-CcccCCchh---hhhhhheEccCccccccccc
Confidence 3566666666666 5555541 1 1246666666654 455555433 226666666665 5555543
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=5.6e-05 Score=64.00 Aligned_cols=98 Identities=24% Similarity=0.363 Sum_probs=47.1
Q ss_pred EEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc--cccccccccccEEEec
Q 045968 45 RLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP--VGMSVLGSSLELLDIS 122 (402)
Q Consensus 45 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~--~~~~~l~~~L~~L~L~ 122 (402)
.+++.+|++-.++.++.++.|.+|.+..| .+..+.+..-.-+++|..|.+.+| ++.++. ..+..++ +|++|.+-
T Consensus 46 ~iDLtdNdl~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN--si~~l~dl~pLa~~p-~L~~Ltll 121 (233)
T KOG1644|consen 46 AIDLTDNDLRKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN--SIQELGDLDPLASCP-KLEYLTLL 121 (233)
T ss_pred eecccccchhhcccCCCccccceEEecCC-cceeeccchhhhccccceEEecCc--chhhhhhcchhccCC-ccceeeec
Confidence 35555555555555555555555555544 555555443344455555555555 444431 1122333 55555555
Q ss_pred CCCCccccHh----hhcCCCCcEEEccC
Q 045968 123 CTGITELPEE----LKKLVNLKCLNLRW 146 (402)
Q Consensus 123 ~~~l~~lp~~----i~~l~~L~~L~l~~ 146 (402)
+|.+.+-... +..+++|+.||+.+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 5544433221 34445555555433
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=6.3e-05 Score=63.69 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=66.8
Q ss_pred EEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecC
Q 045968 45 RLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISC 123 (402)
Q Consensus 45 ~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~ 123 (402)
.+++.+..+..+... .-..+...+++++| .+..++. |..++.|..|.+.+| .|+.+...+..+.|+|..|.+.+
T Consensus 23 e~~LR~lkip~ienlg~~~d~~d~iDLtdN-dl~~l~~--lp~l~rL~tLll~nN--rIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 23 ELDLRGLKIPVIENLGATLDQFDAIDLTDN-DLRKLDN--LPHLPRLHTLLLNNN--RITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccchhhccccccccceeccccc-chhhccc--CCCccccceEEecCC--cceeeccchhhhccccceEEecC
Confidence 444444444443332 23344556667766 5544443 666677777777777 67777555555555677777777
Q ss_pred CCCccccH--hhhcCCCCcEEEccCCCCccccc---hhhhhCCCCCcEEEeeee
Q 045968 124 TGITELPE--ELKKLVNLKCLNLRWTGALIRIP---RQLISKFSRLRVLRMFAI 172 (402)
Q Consensus 124 ~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~ 172 (402)
|.+.++.+ .+..+++|+.|.+-+ +.+++-. .-++..+++|+.|++...
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~-Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cchhhhhhcchhccCCccceeeecC-CchhcccCceeEEEEecCcceEeehhhh
Confidence 76665533 245556666666655 3333221 112445555555555443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=0.00013 Score=69.44 Aligned_cols=85 Identities=21% Similarity=0.368 Sum_probs=61.1
Q ss_pred CccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccccccccc
Q 045968 36 DVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSS 115 (402)
Q Consensus 36 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~ 115 (402)
.+..+..+++|++++|.++.+|.+. ++|++|.+.+|..+..+|.. + .++|++|.+.+|. .+..+| ++
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs-~L~sLP-------~s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCP-EISGLP-------ES 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcc-cccccc-------cc
Confidence 3445688999999999888887432 36999999998788777764 3 3589999999985 454444 36
Q ss_pred ccEEEecCCC---CccccHhh
Q 045968 116 LELLDISCTG---ITELPEEL 133 (402)
Q Consensus 116 L~~L~L~~~~---l~~lp~~i 133 (402)
|+.|+++.+. +..+|..+
T Consensus 114 Le~L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPNGL 134 (426)
T ss_pred cceEEeCCCCCcccccCcchH
Confidence 7777777654 45566554
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.62 E-value=2.6e-05 Score=77.47 Aligned_cols=242 Identities=21% Similarity=0.236 Sum_probs=140.2
Q ss_pred CCCCccceEeccccccccccc-hHHhccCCCCCEEEccCCCccccccc----cccccccccccEEEecCCC-CccccH-h
Q 045968 60 PTCPHLLTLFLDFNQELEMIA-DGFFQLMPSLKVLKMSNCGQGRLKLP----VGMSVLGSSLELLDISCTG-ITELPE-E 132 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~i~~l~----~~~~~l~~~L~~L~L~~~~-l~~lp~-~ 132 (402)
..+++|+.+.+..+..+.+.. ......++.|+.|++.+|...+...+ .....+. +|+.|+++++. ++...- .
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICR-KLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcC-CcCccchhhhhccCchhHHH
Confidence 458999999999887776632 33478899999999987310222212 2233455 99999999986 553321 2
Q ss_pred -hhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEe
Q 045968 133 -LKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSL 210 (402)
Q Consensus 133 -i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 210 (402)
...+++|+.|.+..|..+++... .+..++++|++|++.+|.... .........++++++.|.+..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-------------d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-------------DSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-------------HHHHHHHHHhCcchhhhhhhh
Confidence 33488999999988876665433 234578999999999988752 222333345577777666543
Q ss_pred cC-chhhHhh--hhhhhhc-ccceeeEeccc-eeeeEeccccccccCCCCccccccccEEecccccCcc-cCcc-cccCC
Q 045968 211 GS-YHALQIL--LSSNKLK-SCIRSLCLDGF-ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLK-DVTF-LVFAP 283 (402)
Q Consensus 211 ~~-~~~~~~~--~~~~~~~-~~L~~L~l~~~-~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~-~~~l~ 283 (402)
.. +..+... ....... ..+..+.+.++ +++.+.+..+.. .... ..+.+.+|+.++ .+.. ...+.
T Consensus 331 ~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~-~~~~--------~~~~l~gc~~l~~~l~~~~~~~~ 401 (482)
T KOG1947|consen 331 LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI-SDLG--------LELSLRGCPNLTESLELRLCRSD 401 (482)
T ss_pred cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc-cCcc--------hHHHhcCCcccchHHHHHhccCC
Confidence 22 1222211 1111111 13344444444 555555554431 1111 134555665552 2222 22233
Q ss_pred CCCEEeecCCcchHHHhhcCCCCCCccccCCCCC-CCccceeecCcccccccc
Q 045968 284 NLKSLDLDGCDAMEEIISVGKFAETPEMMGHISP-FENLQRLNLEDLPNLESI 335 (402)
Q Consensus 284 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~c~~l~~i 335 (402)
.++.|++..|...+.... ..... +.+++.+.+.+|+.+...
T Consensus 402 ~l~~L~l~~~~~~t~~~l-----------~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGL-----------RCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred ccceEecccCccccccch-----------HHHhhhhhccccCCccCcccccch
Confidence 489999999887665421 11111 677888888888766443
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.46 E-value=1.8e-05 Score=62.75 Aligned_cols=109 Identities=27% Similarity=0.324 Sum_probs=85.3
Q ss_pred CCccceEeccccccccccch--HHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCC
Q 045968 62 CPHLLTLFLDFNQELEMIAD--GFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNL 139 (402)
Q Consensus 62 ~~~L~~L~l~~~~~l~~~~~--~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L 139 (402)
...+..++++.| .+..++. +.+.+-..|...++++| .++.+|..|...+|.++.|++++|.+.++|..+..++.|
T Consensus 26 akE~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N--~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aL 102 (177)
T KOG4579|consen 26 AKELHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDN--GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPAL 102 (177)
T ss_pred HHHhhhcccccc-hhhHHHHHHHHHhCCceEEEEecccc--hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHh
Confidence 344566778877 5544442 33566677888899999 899998888766668999999999999999999999999
Q ss_pred cEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 140 KCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 140 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
+.++++. |.+...|.- +..+.+|-.|+..++...
T Consensus 103 r~lNl~~-N~l~~~p~v-i~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 103 RSLNLRF-NPLNAEPRV-IAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhccccc-CccccchHH-HHHHHhHHHhcCCCCccc
Confidence 9999998 677777764 666888888887776654
No 62
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.35 E-value=5.8e-06 Score=82.05 Aligned_cols=127 Identities=24% Similarity=0.298 Sum_probs=77.4
Q ss_pred CccceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccE
Q 045968 40 WENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLEL 118 (402)
Q Consensus 40 ~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~ 118 (402)
|..|...++++|.+..+... .-++.|+.|++++| ++.... .+..|++|++|+++.| .+..+|..-..-. +|+.
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsyN--~L~~vp~l~~~gc-~L~~ 236 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSYN--CLRHVPQLSMVGC-KLQL 236 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH--HHHhcccccccccccc--hhccccccchhhh-hhee
Confidence 44555566666665544433 55677777777777 555544 3777777888887777 6666653211112 5777
Q ss_pred EEecCCCCccccHhhhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecc
Q 045968 119 LDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 119 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 174 (402)
|.+++|.++++ .++.++.+|+.||++. |.+..... .-+..+..|+.|.+.+|..
T Consensus 237 L~lrnN~l~tL-~gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 237 LNLRNNALTTL-RGIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeecccHHHhh-hhHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 77777777766 5677777777777777 33332111 1144566666666666644
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=4e-05 Score=68.00 Aligned_cols=101 Identities=24% Similarity=0.171 Sum_probs=64.3
Q ss_pred CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccH--hhhcCCC
Q 045968 61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPE--ELKKLVN 138 (402)
Q Consensus 61 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~--~i~~l~~ 138 (402)
.+.+++.|+..+| .+.+| ++..+++.|++|.|+-| .|+.+. .+..+. +|+.|.|..|.|.++.+ .+.++++
T Consensus 17 dl~~vkKLNcwg~-~L~DI--sic~kMp~lEVLsLSvN--kIssL~-pl~rCt-rLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDI--SICEKMPLLEVLSLSVN--KISSLA-PLQRCT-RLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCC-CccHH--HHHHhcccceeEEeecc--ccccch-hHHHHH-HHHHHHHHhcccccHHHHHHHhcCch
Confidence 3556666777776 66665 44677777777777777 777662 255666 77777777777766643 3667777
Q ss_pred CcEEEccCCCCccccc----hhhhhCCCCCcEEE
Q 045968 139 LKCLNLRWTGALIRIP----RQLISKFSRLRVLR 168 (402)
Q Consensus 139 L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~ 168 (402)
|+.|-|..|.-...-+ ..++.-+++|+.|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777766544333222 23355677777775
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.88 E-value=0.00052 Score=60.57 Aligned_cols=112 Identities=23% Similarity=0.225 Sum_probs=70.7
Q ss_pred CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccc-ccccccccccccccEEEecCCCCcccc--HhhhcC
Q 045968 60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLELLDISCTGITELP--EELKKL 136 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~~L~L~~~~l~~lp--~~i~~l 136 (402)
..+..|+.+.+.++ .+..+.. +..+++|+.|.+++|.+.++ .++.....++ +|++|++++|++..+- ..+..+
T Consensus 40 d~~~~le~ls~~n~-gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P-~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINV-GLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAP-NLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccchhhhhhhcc-ceeeccc--CCCcchhhhhcccCCcccccccceehhhhCC-ceeEEeecCCccccccccchhhhh
Confidence 44555666666644 4444333 67778888888888854443 4444444554 8999999988776431 235677
Q ss_pred CCCcEEEccCCCCcc--ccchhhhhCCCCCcEEEeeeeccc
Q 045968 137 VNLKCLNLRWTGALI--RIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 137 ~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
.+|..|++..|.... .--..++.-+++|++|+-..+...
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 788888888874322 222344566888888887665554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.00016 Score=64.30 Aligned_cols=94 Identities=22% Similarity=0.311 Sum_probs=50.2
Q ss_pred hHHHHHHHHhhhcccccCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccch-H
Q 045968 4 VIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIAD-G 82 (402)
Q Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~ 82 (402)
|.++|....++.-...+...+.+.+-++++|.-+.+++.|+.|.++-|.|..+..+..|++|+.|.+..| .|.++.. .
T Consensus 4 LTe~mV~~raK~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~sldEL~ 82 (388)
T KOG2123|consen 4 LTESMVYIRAKCSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIESLDELE 82 (388)
T ss_pred HHHHHHHHHHHhhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccccHHHHH
Confidence 4444444444431112223333444455555555666666666666666666666666666666666665 5554432 1
Q ss_pred HhccCCCCCEEEccCC
Q 045968 83 FFQLMPSLKVLKMSNC 98 (402)
Q Consensus 83 ~~~~l~~L~~L~l~~~ 98 (402)
.++++|+||.|.|..|
T Consensus 83 YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHhcCchhhhHhhccC
Confidence 1456666666666655
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.71 E-value=0.006 Score=48.74 Aligned_cols=114 Identities=22% Similarity=0.336 Sum_probs=39.0
Q ss_pred CccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccc
Q 045968 40 WENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSL 116 (402)
Q Consensus 40 ~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L 116 (402)
+.+++.+.+.. .+..+... ..+++|+.+.+.. .+..++...|..++.|+.+.+.++ +..+ ...|..+. +|
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~---~~~i~~~~F~~~~-~l 83 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPNN---LKSIGDNAFSNCT-NL 83 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETST---T-EE-TTTTTT-T-TE
T ss_pred CCCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeeccccccccccccc---ccccccccccccc-cc
Confidence 34555555543 33334332 4445555555543 244455555555555666655432 2222 22333344 55
Q ss_pred cEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCC
Q 045968 117 ELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRL 164 (402)
Q Consensus 117 ~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 164 (402)
+.+++..+ +..++.. +.++ +|+.+.+.. .+..++...+.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 55555443 3333332 3333 555555443 3334444444444444
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.66 E-value=0.0038 Score=55.60 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=113.8
Q ss_pred CccceEEEccCCcccc-----cC-CCCCCCccceEeccccc--ccc-ccc------hHHhccCCCCCEEEccCCCccccc
Q 045968 40 WENVRRLSLMQNQIET-----VS-EVPTCPHLLTLFLDFNQ--ELE-MIA------DGFFQLMPSLKVLKMSNCGQGRLK 104 (402)
Q Consensus 40 ~~~l~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~--~l~-~~~------~~~~~~l~~L~~L~l~~~~~~i~~ 104 (402)
+..+..+++++|.|.. +. .+..-.+|+..+++... ... .++ ..++-+||+|+..++++|.|...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~- 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE- 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc-
Confidence 5678889999997653 22 12556778887777531 111 122 23378899999999999953333
Q ss_pred cccc----cccccccccEEEecCCCCccc-----cHh---------hhcCCCCcEEEccCCCCccccch----hhhhCCC
Q 045968 105 LPVG----MSVLGSSLELLDISCTGITEL-----PEE---------LKKLVNLKCLNLRWTGALIRIPR----QLISKFS 162 (402)
Q Consensus 105 l~~~----~~~l~~~L~~L~L~~~~l~~l-----p~~---------i~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~ 162 (402)
.|.. ++... .|.+|.+++|++.-+ ... +.+-+.|+.+.... |.+.+.+. ..+.+-.
T Consensus 108 ~~e~L~d~is~~t-~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 108 FPEELGDLISSST-DLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESHE 185 (388)
T ss_pred cchHHHHHHhcCC-CceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhhc
Confidence 3333 34455 899999999987633 211 23457899998888 56665443 2234446
Q ss_pred CCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhH--hhhhhhhhcccceeeEeccc
Q 045968 163 RLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQ--ILLSSNKLKSCIRSLCLDGF 237 (402)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 237 (402)
+|+++.+..|.+... +. ....+..+..+++|+.|++..+...... .+......++.|+.|.+.+|
T Consensus 186 ~lk~vki~qNgIrpe--gv--------~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 186 NLKEVKIQQNGIRPE--GV--------TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred CceeEEeeecCcCcc--hh--------HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 899999998887531 00 2234456778899999999854332221 12222334445566655555
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.0015 Score=57.66 Aligned_cols=105 Identities=25% Similarity=0.231 Sum_probs=75.9
Q ss_pred CCccceEEEccCCcccccCCCCCCCccceEecccc--ccccccchHHhccCCCCCEEEccCCCcccccc--ccccccccc
Q 045968 39 GWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFN--QELEMIADGFFQLMPSLKVLKMSNCGQGRLKL--PVGMSVLGS 114 (402)
Q Consensus 39 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l--~~~~~~l~~ 114 (402)
.+..++.+++.+...+.+.....+++|+.|.++.| .....++.. ...+|+|++|++++| .+..+ ...+..+.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N--ki~~lstl~pl~~l~- 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN--KIKDLSTLRPLKELE- 116 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC--ccccccccchhhhhc-
Confidence 34567778887778777777889999999999988 333334444 566799999999999 66643 12245566
Q ss_pred cccEEEecCCCCccccHh----hhcCCCCcEEEccCC
Q 045968 115 SLELLDISCTGITELPEE----LKKLVNLKCLNLRWT 147 (402)
Q Consensus 115 ~L~~L~L~~~~l~~lp~~----i~~l~~L~~L~l~~~ 147 (402)
+|..|++.+|....+-.. +.-+++|++|+-..+
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 899999999866654332 566789999986654
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.09 E-value=0.008 Score=53.58 Aligned_cols=136 Identities=20% Similarity=0.178 Sum_probs=75.4
Q ss_pred CCccCCccceEEEccCCcccc-cCC-C----CCCCccceEeccccccccccchHH-------------hccCCCCCEEEc
Q 045968 35 PDVKGWENVRRLSLMQNQIET-VSE-V----PTCPHLLTLFLDFNQELEMIADGF-------------FQLMPSLKVLKM 95 (402)
Q Consensus 35 ~~~~~~~~l~~L~l~~~~~~~-~~~-~----~~~~~L~~L~l~~~~~l~~~~~~~-------------~~~l~~L~~L~l 95 (402)
+.+.+|++++.+++++|.+.. ++. . ++-..|.+|.+.+| .+..+...- ...-|.|++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 456677777777777776542 221 1 56677777777766 443322111 123456777777
Q ss_pred cCCCccccccccc-----cccccccccEEEecCCCCcc-----c-cHhhhcCCCCcEEEccCCCCccccch----hhhhC
Q 045968 96 SNCGQGRLKLPVG-----MSVLGSSLELLDISCTGITE-----L-PEELKKLVNLKCLNLRWTGALIRIPR----QLISK 160 (402)
Q Consensus 96 ~~~~~~i~~l~~~-----~~~l~~~L~~L~L~~~~l~~-----l-p~~i~~l~~L~~L~l~~~~~~~~~~~----~~l~~ 160 (402)
..| ++.+.+.. +.... +|+.+.+..|+|.. + -.++..+.+|+.||+.. |.++.... .+++.
T Consensus 165 grN--Rlengs~~~~a~~l~sh~-~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~ 240 (388)
T COG5238 165 GRN--RLENGSKELSAALLESHE-NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCE 240 (388)
T ss_pred ccc--hhccCcHHHHHHHHHhhc-CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcc
Confidence 666 55543321 22234 67777777776651 1 11244556777777777 44443221 12456
Q ss_pred CCCCcEEEeeeeccc
Q 045968 161 FSRLRVLRMFAIGYD 175 (402)
Q Consensus 161 l~~L~~L~l~~~~~~ 175 (402)
++.|++|++.+|-..
T Consensus 241 W~~lrEL~lnDClls 255 (388)
T COG5238 241 WNLLRELRLNDCLLS 255 (388)
T ss_pred cchhhhccccchhhc
Confidence 666777777777653
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.28 E-value=0.0077 Score=31.93 Aligned_cols=17 Identities=41% Similarity=0.716 Sum_probs=7.5
Q ss_pred ccEEEecCCCCccccHh
Q 045968 116 LELLDISCTGITELPEE 132 (402)
Q Consensus 116 L~~L~L~~~~l~~lp~~ 132 (402)
|++|++++|.++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444433
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.90 E-value=0.076 Score=42.24 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=56.5
Q ss_pred CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecCCCCccccHh-hhcCC
Q 045968 60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLV 137 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~ 137 (402)
..+.+|+.+.+.. .+..++...|..+++|+.+.+.++ +..+ ...|..+. +|+.+.+.. .+..++.. +..++
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~---~~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN---LTSIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST---TSCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-T
T ss_pred hCCCCCCEEEECC--CeeEeChhhccccccccccccccc---ccccceeeeeccc-ccccccccc-cccccccccccccc
Confidence 4566788777763 566677777888888888888664 5554 34466666 788888865 55555443 55678
Q ss_pred CCcEEEccCCCCccccchhhhhCCCCCcEEEeee
Q 045968 138 NLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFA 171 (402)
Q Consensus 138 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 171 (402)
+|+.+++.. .+..++...+.++ +|+.+.+..
T Consensus 82 ~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 888888865 3666666557776 888777654
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.0037 Score=53.21 Aligned_cols=62 Identities=32% Similarity=0.598 Sum_probs=31.4
Q ss_pred ccccccEEecccccCcccC--cccc-cCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968 258 VFRNLHRVTMVLCHKLKDV--TFLV-FAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP 330 (402)
Q Consensus 258 ~~~~L~~L~l~~~~~l~~l--~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 330 (402)
.++.++.|.+.+|..+.+. ..++ -.++|+.|+|++|+.+++- ....+..+++|+.|.+.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----------GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----------GLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----------HHHHHHHhhhhHHHHhcCch
Confidence 3455555555555555543 2222 2455666666666655543 12344555555555555544
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.62 E-value=0.023 Score=27.95 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=6.8
Q ss_pred cccEEEecCCCCcccc
Q 045968 115 SLELLDISCTGITELP 130 (402)
Q Consensus 115 ~L~~L~L~~~~l~~lp 130 (402)
+|+.|++++|++.++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5555666665555443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.98 E-value=0.041 Score=27.07 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=9.5
Q ss_pred CCccEEEecCCCCCCCCC
Q 045968 343 TRLKEMAVLGCDQLEKLP 360 (402)
Q Consensus 343 ~~L~~L~i~~c~~L~~lp 360 (402)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467777887776 77765
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.019 Score=49.00 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=17.3
Q ss_pred eEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 67 TLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 67 ~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
.++-+++ .+...+-..+..++.++.|.+.+|.
T Consensus 105 aVDAsds-~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 105 AVDASDS-SIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEecCCc-hHHHHHHHHHhccchhhhheecccc
Confidence 3444433 4444444446666666666666663
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.30 E-value=0.047 Score=28.85 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=12.0
Q ss_pred CCCEEEccCCCccccccccccc
Q 045968 89 SLKVLKMSNCGQGRLKLPVGMS 110 (402)
Q Consensus 89 ~L~~L~l~~~~~~i~~l~~~~~ 110 (402)
+|++|++++| .++.+|..|+
T Consensus 1 ~L~~Ldls~n--~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN--NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS--EESEEGTTTT
T ss_pred CccEEECCCC--cCEeCChhhc
Confidence 3566666666 5666655544
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.28 E-value=0.32 Score=26.77 Aligned_cols=17 Identities=24% Similarity=0.669 Sum_probs=13.3
Q ss_pred CCCccEEEecCCCCCCC
Q 045968 342 FTRLKEMAVLGCDQLEK 358 (402)
Q Consensus 342 ~~~L~~L~i~~c~~L~~ 358 (402)
||+|+.|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 57888888888888764
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.92 E-value=0.023 Score=49.59 Aligned_cols=83 Identities=18% Similarity=0.097 Sum_probs=49.8
Q ss_pred CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCC
Q 045968 60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNL 139 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L 139 (402)
..+...+.|+++.| .+...... |+.+..|..|+++.+ .+..+|.+++.+. .+.++++..|.....|...+..+.+
T Consensus 39 ~~~kr~tvld~~s~-r~vn~~~n-~s~~t~~~rl~~skn--q~~~~~~d~~q~~-e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSN-RLVNLGKN-FSILTRLVRLDLSKN--QIKFLPKDAKQQR-ETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hccceeeeehhhhh-HHHhhccc-hHHHHHHHHHhccHh--hHhhChhhHHHHH-HHHHHHhhccchhhCCccccccCCc
Confidence 45566666666655 44344444 555555666666666 5666666666666 6666666666666666666666666
Q ss_pred cEEEccCC
Q 045968 140 KCLNLRWT 147 (402)
Q Consensus 140 ~~L~l~~~ 147 (402)
+.++..++
T Consensus 114 k~~e~k~~ 121 (326)
T KOG0473|consen 114 KKNEQKKT 121 (326)
T ss_pred chhhhccC
Confidence 66666554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.66 E-value=0.042 Score=48.04 Aligned_cols=94 Identities=18% Similarity=0.106 Sum_probs=78.4
Q ss_pred cccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchh
Q 045968 77 EMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQ 156 (402)
Q Consensus 77 ~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 156 (402)
..+|-.-+..+...++|+++.+ .+..+-..|+.+. .|..|+++.|.+..+|...+....+..+++.. +..++.|.+
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~--r~vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s 106 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSN--RLVNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS 106 (326)
T ss_pred cccchhhhhccceeeeehhhhh--HHHhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc
Confidence 3444333566778899999999 8888877888888 99999999999999999998888889999888 678889987
Q ss_pred hhhCCCCCcEEEeeeeccc
Q 045968 157 LISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 157 ~l~~l~~L~~L~l~~~~~~ 175 (402)
.+..+.+++++..++.+.
T Consensus 107 -~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 -QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred -ccccCCcchhhhccCcch
Confidence 899999999998877654
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.98 E-value=0.77 Score=25.07 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=9.8
Q ss_pred cccEEEecCCCCccccHh
Q 045968 115 SLELLDISCTGITELPEE 132 (402)
Q Consensus 115 ~L~~L~L~~~~l~~lp~~ 132 (402)
+|++|++++|.+..+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 455555555555555544
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.98 E-value=0.77 Score=25.07 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=9.8
Q ss_pred cccEEEecCCCCccccHh
Q 045968 115 SLELLDISCTGITELPEE 132 (402)
Q Consensus 115 ~L~~L~L~~~~l~~lp~~ 132 (402)
+|++|++++|.+..+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 455555555555555544
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.14 E-value=1.7 Score=23.94 Aligned_cols=17 Identities=47% Similarity=0.677 Sum_probs=12.7
Q ss_pred cccEEEecCCCCccccH
Q 045968 115 SLELLDISCTGITELPE 131 (402)
Q Consensus 115 ~L~~L~L~~~~l~~lp~ 131 (402)
+|+.|++++|.+.++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 67777777777777765
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.52 E-value=7.5 Score=20.54 Aligned_cols=12 Identities=50% Similarity=0.628 Sum_probs=4.7
Q ss_pred cccEEEecCCCC
Q 045968 115 SLELLDISCTGI 126 (402)
Q Consensus 115 ~L~~L~L~~~~l 126 (402)
+|++|++++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444445544443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=54.55 E-value=8.9 Score=21.12 Aligned_cols=13 Identities=46% Similarity=0.526 Sum_probs=7.2
Q ss_pred cccEEEecCCCCc
Q 045968 115 SLELLDISCTGIT 127 (402)
Q Consensus 115 ~L~~L~L~~~~l~ 127 (402)
+|+.|+++.|+|.
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4555555555554
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.17 E-value=12 Score=20.78 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=8.7
Q ss_pred cccEEEecCCCCc
Q 045968 115 SLELLDISCTGIT 127 (402)
Q Consensus 115 ~L~~L~L~~~~l~ 127 (402)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 5677777776654
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.70 E-value=5.9 Score=39.35 Aligned_cols=84 Identities=21% Similarity=0.154 Sum_probs=50.8
Q ss_pred ccccccEEecccccCcccCccc----ccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccc
Q 045968 258 VFRNLHRVTMVLCHKLKDVTFL----VFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE 333 (402)
Q Consensus 258 ~~~~L~~L~l~~~~~l~~l~~~----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 333 (402)
.++.+..+.++++ .+.++..+ ...|+|+.|+|+++...... +......+..-|+.|-+.++|--+
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~----------~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISS----------ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcc----------hhhhhhhcCCCHHHeeecCCcccc
Confidence 6788888888887 66666433 34688999999887221111 001122344567888888866444
Q ss_pred ccc-------cCccCCCCccEEEecC
Q 045968 334 SIY-------WKPLPFTRLKEMAVLG 352 (402)
Q Consensus 334 ~i~-------~~~~~~~~L~~L~i~~ 352 (402)
.+. .....||+|..||=..
T Consensus 285 tf~~~s~yv~~i~~~FPKL~~LDG~e 310 (585)
T KOG3763|consen 285 TFSDRSEYVSAIRELFPKLLRLDGVE 310 (585)
T ss_pred chhhhHHHHHHHHHhcchheeecCcc
Confidence 333 2234588888777543
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.66 E-value=19 Score=35.88 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=45.1
Q ss_pred hccCCCCCEEEccCCCccccccc--cccccccccccEEEecCC--CCccccHhhh--cCCCCcEEEccCCCCcccc--ch
Q 045968 84 FQLMPSLKVLKMSNCGQGRLKLP--VGMSVLGSSLELLDISCT--GITELPEELK--KLVNLKCLNLRWTGALIRI--PR 155 (402)
Q Consensus 84 ~~~l~~L~~L~l~~~~~~i~~l~--~~~~~l~~~L~~L~L~~~--~l~~lp~~i~--~l~~L~~L~l~~~~~~~~~--~~ 155 (402)
-.+.+.+..+++++| .+..+. .++..-.|+|..|+|++| .+...+ ++. ....|++|-+.++...+.+ +.
T Consensus 214 ~~n~p~i~sl~lsnN--rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 214 EENFPEILSLSLSNN--RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred hcCCcceeeeecccc--hhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhH
Confidence 345677777788887 666552 223332348888888887 444332 222 2346777777775433332 11
Q ss_pred hhh----hCCCCCcEEE
Q 045968 156 QLI----SKFSRLRVLR 168 (402)
Q Consensus 156 ~~l----~~l~~L~~L~ 168 (402)
+.+ ..+++|..|+
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 212 2567776665
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=33.97 E-value=0.88 Score=45.17 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=9.0
Q ss_pred ccccccccEEEecCCCCc
Q 045968 110 SVLGSSLELLDISCTGIT 127 (402)
Q Consensus 110 ~~l~~~L~~L~L~~~~l~ 127 (402)
...+ +|..|++++|.+.
T Consensus 112 ~t~~-~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 112 KTLP-TLGQLDLSGNNLG 128 (478)
T ss_pred cccc-cHhHhhcccCCCc
Confidence 3344 5556666665444
Done!