Query 045968
Match_columns 402
No_of_seqs 158 out of 2296
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 12:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 2.5E-25 8.6E-30 210.5 23.4 275 38-360 41-327 (347)
2 4fmz_A Internalin; leucine ric 99.9 3.2E-25 1.1E-29 209.8 21.6 289 19-354 44-344 (347)
3 1o6v_A Internalin A; bacterial 99.9 4.6E-23 1.6E-27 203.0 25.5 240 20-293 47-319 (466)
4 3v47_A TOLL-like receptor 5B a 99.9 3.7E-23 1.3E-27 202.8 24.0 332 22-374 13-401 (455)
5 3o6n_A APL1; leucine-rich repe 99.9 1E-23 3.5E-28 202.8 16.7 276 39-361 43-335 (390)
6 2id5_A Lingo-1, leucine rich r 99.9 5.9E-23 2E-27 202.7 21.6 293 22-352 14-329 (477)
7 1o6v_A Internalin A; bacterial 99.9 1.4E-22 4.9E-27 199.4 23.7 293 20-362 69-393 (466)
8 3vq2_A TLR4, TOLL-like recepto 99.9 2.6E-22 9E-27 203.9 24.4 148 22-176 14-167 (606)
9 2z63_A TOLL-like receptor 4, v 99.9 4.5E-22 1.5E-26 200.6 25.4 147 22-175 10-162 (570)
10 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-22 7.8E-27 201.9 22.6 150 22-176 8-162 (549)
11 3t6q_A CD180 antigen; protein- 99.9 4.9E-22 1.7E-26 201.9 23.9 148 22-175 15-166 (606)
12 3t6q_A CD180 antigen; protein- 99.9 7.2E-22 2.5E-26 200.7 24.5 61 37-98 125-189 (606)
13 2id5_A Lingo-1, leucine rich r 99.9 4.3E-22 1.5E-26 196.5 21.5 282 44-363 14-315 (477)
14 3vq2_A TLR4, TOLL-like recepto 99.9 6.1E-22 2.1E-26 201.2 22.3 130 20-154 33-169 (606)
15 3o6n_A APL1; leucine-rich repe 99.9 4.3E-22 1.5E-26 191.5 19.7 285 20-354 46-350 (390)
16 3oja_B Anopheles plasmodium-re 99.9 1.3E-22 4.4E-27 205.8 16.7 277 39-362 49-342 (597)
17 4eco_A Uncharacterized protein 99.9 1.4E-22 4.7E-27 207.0 16.5 314 34-374 198-593 (636)
18 4ecn_A Leucine-rich repeat pro 99.9 4.2E-22 1.4E-26 208.1 18.9 317 34-374 440-833 (876)
19 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-22 8.2E-27 197.0 15.5 138 22-174 45-182 (457)
20 2z7x_B TOLL-like receptor 1, v 99.9 3.8E-21 1.3E-25 191.8 23.8 143 21-174 2-150 (520)
21 3rgz_A Protein brassinosteroid 99.9 9.7E-22 3.3E-26 205.0 19.5 145 22-174 181-330 (768)
22 2ft3_A Biglycan; proteoglycan, 99.9 8E-22 2.7E-26 185.4 15.9 261 42-354 34-305 (332)
23 4eco_A Uncharacterized protein 99.9 6.5E-22 2.2E-26 202.0 16.0 208 60-294 203-468 (636)
24 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-21 6E-26 190.9 18.4 214 36-290 37-261 (457)
25 3oja_B Anopheles plasmodium-re 99.9 1.2E-21 4.2E-26 198.6 17.4 283 22-354 54-356 (597)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-20 6E-25 188.8 24.9 142 22-174 34-181 (562)
27 3v47_A TOLL-like receptor 5B a 99.9 3E-21 1E-25 189.2 18.8 304 20-354 31-406 (455)
28 1xku_A Decorin; proteoglycan, 99.9 4.2E-21 1.4E-25 180.3 19.0 263 42-354 32-304 (330)
29 4ecn_A Leucine-rich repeat pro 99.9 2.2E-21 7.4E-26 202.7 18.6 268 60-361 445-770 (876)
30 1ziw_A TOLL-like receptor 3; i 99.9 9.8E-21 3.3E-25 194.9 23.3 313 22-360 7-371 (680)
31 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-20 4.8E-25 188.8 23.4 149 20-174 27-184 (549)
32 4fcg_A Uncharacterized protein 99.9 2.6E-21 8.9E-26 181.6 16.7 83 87-174 80-162 (328)
33 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-20 4.5E-25 198.5 23.5 305 22-361 7-379 (844)
34 2z63_A TOLL-like receptor 4, v 99.9 8.3E-21 2.8E-25 191.3 21.0 335 21-374 30-524 (570)
35 2z80_A TOLL-like receptor 2, v 99.9 1.1E-21 3.7E-26 186.1 13.7 174 22-215 34-212 (353)
36 2z7x_B TOLL-like receptor 1, v 99.9 2E-20 6.8E-25 186.6 22.2 120 20-148 22-149 (520)
37 4fcg_A Uncharacterized protein 99.9 7.7E-21 2.6E-25 178.4 17.6 221 61-351 79-309 (328)
38 3rgz_A Protein brassinosteroid 99.9 2.8E-21 9.7E-26 201.5 15.5 321 21-362 202-557 (768)
39 1ziw_A TOLL-like receptor 3; i 99.8 4.6E-20 1.6E-24 189.9 22.1 152 20-176 26-185 (680)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.1E-19 1.1E-23 179.7 24.4 119 20-147 53-179 (562)
41 4g8a_A TOLL-like receptor 4; l 99.8 3.6E-19 1.2E-23 181.2 24.6 147 23-176 35-187 (635)
42 1ogq_A PGIP-2, polygalacturona 99.8 2.3E-20 7.9E-25 174.0 13.7 128 41-175 50-187 (313)
43 2z80_A TOLL-like receptor 2, v 99.8 8.8E-20 3E-24 172.9 16.9 273 40-354 30-312 (353)
44 3zyj_A Leucine-rich repeat-con 99.8 1.5E-19 5.2E-24 176.5 18.4 238 23-294 47-290 (440)
45 3zyi_A Leucine-rich repeat-con 99.8 1.6E-19 5.6E-24 176.9 18.1 239 22-294 57-301 (452)
46 1jl5_A Outer protein YOPM; leu 99.8 1.8E-18 6.2E-23 169.3 23.7 282 21-353 73-367 (454)
47 1xku_A Decorin; proteoglycan, 99.8 1.3E-18 4.5E-23 163.2 21.8 288 22-353 34-329 (330)
48 2z66_A Variable lymphocyte rec 99.8 1.1E-19 3.8E-24 168.7 14.2 144 24-174 12-162 (306)
49 3g06_A SSPH2 (leucine-rich rep 99.8 1.4E-18 4.7E-23 175.8 23.0 254 21-354 42-295 (622)
50 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-20 4.3E-25 176.1 6.9 121 41-174 34-156 (317)
51 2z66_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 165.4 16.3 148 44-212 10-161 (306)
52 3zyj_A Leucine-rich repeat-con 99.8 2.3E-19 7.9E-24 175.2 15.8 242 42-330 44-290 (440)
53 3zyi_A Leucine-rich repeat-con 99.8 2E-19 6.8E-24 176.3 15.4 242 42-330 55-301 (452)
54 2ft3_A Biglycan; proteoglycan, 99.8 8E-19 2.8E-23 164.9 18.1 287 22-354 36-331 (332)
55 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-18 4.2E-23 183.4 20.5 319 20-362 25-399 (844)
56 1jl5_A Outer protein YOPM; leu 99.8 2.5E-18 8.6E-23 168.3 19.8 275 20-358 92-410 (454)
57 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-17 4.6E-22 169.6 24.1 131 19-154 52-189 (635)
58 3o53_A Protein LRIM1, AGAP0063 99.8 1E-18 3.5E-23 163.1 11.7 267 42-362 11-281 (317)
59 3g06_A SSPH2 (leucine-rich rep 99.8 2.1E-17 7.2E-22 167.1 21.8 250 42-374 41-290 (622)
60 1ozn_A Reticulon 4 receptor; N 99.8 1.7E-17 6E-22 152.2 18.4 215 24-295 16-237 (285)
61 1h6u_A Internalin H; cell adhe 99.8 7.2E-18 2.5E-22 156.7 15.5 192 37-294 37-228 (308)
62 1ogq_A PGIP-2, polygalacturona 99.8 1.6E-18 5.4E-23 161.5 10.4 228 36-336 71-308 (313)
63 1ozn_A Reticulon 4 receptor; N 99.8 1.5E-17 5.1E-22 152.7 15.7 218 44-330 14-236 (285)
64 3oja_A Leucine-rich immune mol 99.7 1.5E-18 5E-23 171.5 8.9 215 39-296 32-250 (487)
65 2z62_A TOLL-like receptor 4, v 99.7 9.5E-17 3.3E-21 146.6 18.5 216 23-294 11-235 (276)
66 1wwl_A Monocyte differentiatio 99.7 1.5E-18 5.1E-23 161.7 6.1 244 40-330 42-307 (312)
67 1h6u_A Internalin H; cell adhe 99.7 2.8E-17 9.6E-22 152.7 14.2 205 46-330 24-228 (308)
68 2xwt_C Thyrotropin receptor; s 99.7 3.9E-17 1.3E-21 145.9 13.6 140 30-175 22-169 (239)
69 3oja_A Leucine-rich immune mol 99.7 2.3E-17 7.8E-22 163.0 12.8 238 60-351 31-270 (487)
70 1p9a_G Platelet glycoprotein I 99.7 7.2E-17 2.5E-21 148.6 15.1 199 37-294 6-206 (290)
71 3ogk_B Coronatine-insensitive 99.7 3.3E-17 1.1E-21 165.7 13.6 88 258-358 434-527 (592)
72 1z7x_W Ribonuclease inhibitor; 99.7 1.4E-17 4.8E-22 163.2 10.3 309 21-357 30-411 (461)
73 2o6q_A Variable lymphocyte rec 99.7 2.1E-16 7.2E-21 143.9 15.7 128 42-175 17-146 (270)
74 1z7x_W Ribonuclease inhibitor; 99.7 5.3E-18 1.8E-22 166.3 5.2 290 37-357 24-383 (461)
75 2ast_B S-phase kinase-associat 99.7 6.9E-17 2.4E-21 151.7 10.9 233 88-360 70-309 (336)
76 2xwt_C Thyrotropin receptor; s 99.7 1.8E-16 6.1E-21 141.6 12.7 84 89-175 32-118 (239)
77 2z62_A TOLL-like receptor 4, v 99.7 4.1E-16 1.4E-20 142.3 14.2 217 46-330 12-235 (276)
78 3ogk_B Coronatine-insensitive 99.7 8.8E-17 3E-21 162.6 10.4 298 39-354 110-499 (592)
79 2o6q_A Variable lymphocyte rec 99.7 6.9E-16 2.4E-20 140.5 15.3 170 21-211 18-191 (270)
80 2ast_B S-phase kinase-associat 99.7 7.6E-17 2.6E-21 151.4 8.5 221 42-293 48-282 (336)
81 3rfs_A Internalin B, repeat mo 99.7 8.5E-16 2.9E-20 140.0 14.0 196 35-270 35-232 (272)
82 3rfs_A Internalin B, repeat mo 99.7 2E-16 7E-21 144.2 9.3 173 20-212 42-216 (272)
83 2p1m_B Transport inhibitor res 99.6 6E-16 2.1E-20 156.5 12.1 85 258-355 430-518 (594)
84 1h6t_A Internalin B; cell adhe 99.6 1.2E-15 4.2E-20 140.4 12.1 117 47-174 30-146 (291)
85 2ca6_A RAN GTPase-activating p 99.6 3.4E-16 1.2E-20 150.0 8.1 234 60-330 29-314 (386)
86 4ay9_X Follicle-stimulating ho 99.6 4.7E-15 1.6E-19 140.2 15.7 228 75-351 20-254 (350)
87 3m19_A Variable lymphocyte rec 99.6 4.5E-15 1.6E-19 133.5 14.5 171 22-213 17-191 (251)
88 2p1m_B Transport inhibitor res 99.6 6.3E-16 2.1E-20 156.3 9.7 129 39-171 103-244 (594)
89 1wwl_A Monocyte differentiatio 99.6 1.5E-15 5.2E-20 141.2 11.4 223 42-295 64-308 (312)
90 2ca6_A RAN GTPase-activating p 99.6 4.4E-16 1.5E-20 149.2 7.8 247 75-354 20-314 (386)
91 4ay9_X Follicle-stimulating ho 99.6 3.6E-15 1.2E-19 141.0 13.8 237 22-292 12-255 (350)
92 1p9a_G Platelet glycoprotein I 99.6 6.3E-15 2.2E-19 135.5 13.8 169 21-212 12-183 (290)
93 4ezg_A Putative uncharacterize 99.6 5.2E-15 1.8E-19 128.1 12.4 150 38-212 41-192 (197)
94 1m9s_A Internalin B; cell inva 99.6 1.4E-15 4.8E-20 153.5 8.9 124 40-174 42-165 (605)
95 1h6t_A Internalin B; cell adhe 99.6 2.9E-14 9.8E-19 131.2 16.2 178 32-241 37-214 (291)
96 3m19_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 130.5 12.7 149 42-211 15-165 (251)
97 3goz_A Leucine-rich repeat-con 99.6 1.2E-14 4E-19 138.1 12.5 62 260-330 225-295 (362)
98 4glp_A Monocyte differentiatio 99.6 8.9E-15 3E-19 135.9 11.2 155 41-212 64-235 (310)
99 1xeu_A Internalin C; cellular 99.6 2.2E-14 7.7E-19 129.9 12.6 156 29-213 29-184 (263)
100 1m9s_A Internalin B; cell inva 99.5 2.5E-14 8.5E-19 144.4 13.2 118 46-174 26-143 (605)
101 3e6j_A Variable lymphocyte rec 99.5 4.4E-14 1.5E-18 125.2 13.3 146 24-175 24-172 (229)
102 4ezg_A Putative uncharacterize 99.5 4.7E-14 1.6E-18 122.0 12.5 148 20-175 45-194 (197)
103 4glp_A Monocyte differentiatio 99.5 6.1E-14 2.1E-18 130.2 13.3 203 62-294 63-283 (310)
104 2v9t_B SLIT homolog 2 protein 99.5 7.8E-14 2.7E-18 122.9 11.6 124 45-174 15-140 (220)
105 2v9t_B SLIT homolog 2 protein 99.5 1.5E-13 5.1E-18 121.0 13.1 148 22-175 14-165 (220)
106 3goz_A Leucine-rich repeat-con 99.5 2.9E-14 9.8E-19 135.4 8.8 250 46-354 3-295 (362)
107 2o6s_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 117.5 13.6 146 23-174 11-160 (208)
108 2v70_A SLIT-2, SLIT homolog 2 99.5 2.3E-13 7.9E-18 119.8 12.5 145 24-174 16-165 (220)
109 2xot_A Amphoterin-induced prot 99.5 2E-13 6.9E-18 129.5 12.6 170 22-212 21-200 (361)
110 1xeu_A Internalin C; cellular 99.5 1.7E-14 5.7E-19 130.8 4.4 145 39-212 17-161 (263)
111 3e6j_A Variable lymphocyte rec 99.5 3.8E-13 1.3E-17 119.2 11.7 150 42-213 20-171 (229)
112 2v70_A SLIT-2, SLIT homolog 2 99.4 4.2E-13 1.4E-17 118.1 11.6 150 43-213 13-165 (220)
113 1a9n_A U2A', U2A'; complex (nu 99.4 2.6E-13 8.9E-18 115.1 9.5 134 35-175 13-153 (176)
114 2ell_A Acidic leucine-rich nuc 99.4 3.8E-13 1.3E-17 113.0 9.6 129 41-176 24-161 (168)
115 2o6s_A Variable lymphocyte rec 99.4 9.4E-13 3.2E-17 114.7 12.2 148 43-211 9-158 (208)
116 2je0_A Acidic leucine-rich nuc 99.4 3.9E-13 1.3E-17 110.6 9.1 123 41-170 17-148 (149)
117 2xot_A Amphoterin-induced prot 99.4 6.2E-13 2.1E-17 126.1 11.0 156 43-216 20-178 (361)
118 3cvr_A Invasion plasmid antige 99.4 3.4E-12 1.2E-16 127.6 14.4 183 42-300 60-247 (571)
119 3cvr_A Invasion plasmid antige 99.4 1.9E-12 6.5E-17 129.4 12.4 180 89-335 60-246 (571)
120 2wfh_A SLIT homolog 2 protein 99.3 7.7E-12 2.6E-16 107.7 11.9 125 44-175 13-139 (193)
121 1a9n_A U2A', U2A'; complex (nu 99.3 3.6E-12 1.2E-16 108.0 9.1 124 20-147 20-150 (176)
122 2ell_A Acidic leucine-rich nuc 99.3 1.5E-11 5.3E-16 103.1 12.6 134 17-155 22-164 (168)
123 2o6r_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 105.2 11.4 127 43-175 9-137 (177)
124 1w8a_A SLIT protein; signaling 99.3 8.7E-12 3E-16 107.2 9.9 127 43-175 10-139 (192)
125 2je0_A Acidic leucine-rich nuc 99.3 4.1E-11 1.4E-15 98.4 12.2 125 18-146 16-149 (149)
126 3sb4_A Hypothetical leucine ri 99.2 1.3E-11 4.3E-16 115.5 8.2 219 112-373 100-326 (329)
127 1dce_A Protein (RAB geranylger 99.2 3.6E-11 1.2E-15 120.5 10.8 123 64-207 442-566 (567)
128 2wfh_A SLIT homolog 2 protein 99.2 1.2E-10 3.9E-15 100.2 11.0 124 22-151 13-139 (193)
129 1dce_A Protein (RAB geranylger 99.2 7.6E-11 2.6E-15 118.2 11.3 152 60-233 406-566 (567)
130 1ds9_A Outer arm dynein; leuci 99.2 2.7E-12 9.1E-17 111.0 0.1 126 42-175 24-153 (198)
131 4b8c_D Glucose-repressible alc 99.2 3.2E-11 1.1E-15 124.5 8.0 109 60-175 221-329 (727)
132 1w8a_A SLIT protein; signaling 99.2 1.4E-10 4.7E-15 99.6 10.5 124 22-151 11-139 (192)
133 3sb4_A Hypothetical leucine ri 99.2 1.7E-10 5.9E-15 107.7 12.0 264 40-349 24-327 (329)
134 2o6r_A Variable lymphocyte rec 99.1 3.1E-10 1E-14 96.0 11.3 123 23-151 11-137 (177)
135 4b8c_D Glucose-repressible alc 99.1 8.4E-11 2.9E-15 121.4 8.2 152 41-214 173-329 (727)
136 1ds9_A Outer arm dynein; leuci 99.1 1.5E-11 5E-16 106.3 1.9 128 64-213 24-152 (198)
137 2r9u_A Variable lymphocyte rec 99.0 1.2E-09 4.1E-14 92.2 9.9 97 45-146 16-114 (174)
138 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4E-14 91.9 9.4 98 44-146 12-111 (170)
139 2r9u_A Variable lymphocyte rec 99.0 1.1E-09 3.9E-14 92.3 8.6 103 65-175 14-118 (174)
140 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 91.7 8.5 104 64-175 10-115 (170)
141 4fdw_A Leucine rich hypothetic 98.9 6.2E-08 2.1E-12 92.8 18.4 254 41-376 113-378 (401)
142 4fdw_A Leucine rich hypothetic 98.8 2.9E-07 9.9E-12 88.1 20.9 216 42-329 136-355 (401)
143 4fs7_A Uncharacterized protein 98.7 9.4E-08 3.2E-12 91.4 13.4 124 37-171 67-194 (394)
144 2ifg_A High affinity nerve gro 98.7 3.1E-08 1E-12 93.0 9.4 102 45-151 12-116 (347)
145 3un9_A NLR family member X1; l 98.6 2.4E-08 8.3E-13 94.7 5.8 108 62-174 71-195 (372)
146 2ifg_A High affinity nerve gro 98.6 6.4E-08 2.2E-12 90.7 8.7 103 66-175 11-116 (347)
147 3un9_A NLR family member X1; l 98.6 6.3E-08 2.1E-12 91.8 7.3 192 61-275 45-253 (372)
148 3e4g_A ATP synthase subunit S, 98.4 8.6E-08 3E-12 80.0 3.0 87 260-358 61-154 (176)
149 4gt6_A Cell surface protein; l 98.4 8.1E-06 2.8E-10 77.8 15.9 126 37-171 59-191 (394)
150 2ra8_A Uncharacterized protein 98.3 1.3E-06 4.6E-11 82.1 8.6 62 129-209 164-227 (362)
151 4gt6_A Cell surface protein; l 98.3 2.8E-05 9.5E-10 74.1 17.5 114 53-172 51-170 (394)
152 3e4g_A ATP synthase subunit S, 98.3 1.9E-06 6.6E-11 71.8 7.9 83 89-174 62-151 (176)
153 4fs7_A Uncharacterized protein 98.2 2.1E-05 7E-10 75.0 14.1 104 60-172 159-263 (394)
154 2ra8_A Uncharacterized protein 98.2 6.1E-06 2.1E-10 77.6 10.1 34 258-294 305-341 (362)
155 4h09_A Hypothetical leucine ri 97.9 0.00045 1.5E-08 65.2 18.0 124 37-171 42-167 (379)
156 1io0_A Tropomodulin; LRR prote 97.9 1.6E-05 5.4E-10 67.3 7.0 111 60-174 33-163 (185)
157 1io0_A Tropomodulin; LRR prote 97.8 2.4E-05 8.2E-10 66.2 5.4 111 37-152 32-165 (185)
158 3rw6_A Nuclear RNA export fact 97.6 8.8E-05 3E-09 66.3 6.6 80 85-168 167-257 (267)
159 3rw6_A Nuclear RNA export fact 97.2 0.00033 1.1E-08 62.6 5.7 61 111-175 168-233 (267)
160 4h09_A Hypothetical leucine ri 97.0 0.0026 8.9E-08 59.8 9.7 103 60-170 214-318 (379)
161 1pgv_A TMD-1, tropomodulin TMD 95.1 0.045 1.5E-06 46.2 6.8 84 60-146 38-135 (197)
162 3rfe_A Platelet glycoprotein I 95.0 0.033 1.1E-06 43.7 5.4 50 92-146 12-64 (130)
163 3rfe_A Platelet glycoprotein I 94.4 0.05 1.7E-06 42.6 4.9 56 117-175 11-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 92.4 0.28 9.5E-06 41.3 6.6 120 82-212 35-168 (197)
165 2lz0_A Uncharacterized protein 56.0 8.8 0.0003 28.0 3.1 46 125-172 7-53 (100)
166 2lz0_A Uncharacterized protein 51.4 8.4 0.00029 28.1 2.4 44 76-123 8-52 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.5e-25 Score=210.52 Aligned_cols=275 Identities=15% Similarity=0.158 Sum_probs=155.2
Q ss_pred cCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccccccccccc
Q 045968 38 KGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLE 117 (402)
Q Consensus 38 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~ 117 (402)
..+++++.|++.++.+..++....+++|++|++++| .+.+++. +..+++|++|++++| .++.++ .+..+. +|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n--~i~~~~-~~~~l~-~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTN--KITDIS-ALQNLT-NLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS--CCCCCG-GGTTCT-TCS
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCC--cccCch-HHcCCC-cCC
Confidence 344555666666655555555555566666666655 5555444 555566666666665 555543 344455 566
Q ss_pred EEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhh
Q 045968 118 LLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQEL 197 (402)
Q Consensus 118 ~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (402)
+|++++|.+..++. +..+++|++|++++|.....++. +..+++|++|++.+|..... ..+
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~-----------------~~~ 173 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV-----------------TPI 173 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------GGG
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc-----------------hhh
Confidence 66666655555544 55555666666655444444433 55555666665555554321 113
Q ss_pred hcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc------------eeeeEeccccccccCCCCccccccccEE
Q 045968 198 LGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF------------ELEELKIDYTEIVRKRREPFVFRNLHRV 265 (402)
Q Consensus 198 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------~L~~L~i~~~~~~~~~~~~~~~~~L~~L 265 (402)
..+++|+.|+++++....+.. ....+.|+.+.++++ +|++|+++++......+.. .+++|+.|
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~l~~L~~L 248 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLA-NLSQLTWL 248 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGT-TCTTCCEE
T ss_pred ccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchh-cCCCCCEE
Confidence 344445555544333322221 112234444444443 5666666666554444434 67888888
Q ss_pred ecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCc
Q 045968 266 TMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRL 345 (402)
Q Consensus 266 ~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L 345 (402)
++++| .++.++.+..+++|++|++++|.. +++ ..+..+++|+.|++++|.--...+.....+++|
T Consensus 249 ~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 249 EIGTN-QISDINAVKDLTKLKMLNVGSNQI-SDI-------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp ECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCC-------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred ECCCC-ccCCChhHhcCCCcCEEEccCCcc-CCC-------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 88887 677777777788888888888643 222 245677888888888764333333334457888
Q ss_pred cEEEecCCCCCCCCC
Q 045968 346 KEMAVLGCDQLEKLP 360 (402)
Q Consensus 346 ~~L~i~~c~~L~~lp 360 (402)
+.|++++|+ ++.++
T Consensus 314 ~~L~L~~n~-l~~~~ 327 (347)
T 4fmz_A 314 TTLFLSQNH-ITDIR 327 (347)
T ss_dssp SEEECCSSS-CCCCG
T ss_pred CEEEccCCc-ccccc
Confidence 888888775 56554
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=3.2e-25 Score=209.78 Aligned_cols=289 Identities=18% Similarity=0.178 Sum_probs=236.3
Q ss_pred ccCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968 19 EKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98 (402)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 98 (402)
++...+.+.+..+..++.+..+++|+.|++++|.+..++....+++|++|++++| .+..++. +..+++|++|++++|
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNED 120 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTS
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCC
Confidence 3456777888888888889999999999999999999888899999999999999 7777764 899999999999999
Q ss_pred CccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccc
Q 045968 99 GQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFH 178 (402)
Q Consensus 99 ~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 178 (402)
.+..++. +..+. +|++|++++|.....+..+..+++|++|++.+| .+..++. +..+++|++|++.+|.+..
T Consensus 121 --~i~~~~~-~~~l~-~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~-- 191 (347)
T 4fmz_A 121 --NISDISP-LANLT-KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED-- 191 (347)
T ss_dssp --CCCCCGG-GTTCT-TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC--
T ss_pred --cccCchh-hccCC-ceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc--
Confidence 8888866 77788 999999999955444455899999999999994 6777765 8899999999999998753
Q ss_pred cCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc------------eeeeEeccc
Q 045968 179 EAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF------------ELEELKIDY 246 (402)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------~L~~L~i~~ 246 (402)
+..+..+++|+.+.++.+....... ...++.|+.|.+++| +|++|++++
T Consensus 192 ---------------~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 192 ---------------ISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGT 252 (347)
T ss_dssp ---------------CGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred ---------------cccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCC
Confidence 1227788899999998766554433 344568999999888 788999988
Q ss_pred cccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeec
Q 045968 247 TEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNL 326 (402)
Q Consensus 247 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 326 (402)
+......... .+++|+.|++++| .++.++.+..+++|++|++++|......+ ..+..+++|+.|++
T Consensus 253 n~l~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 253 NQISDINAVK-DLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDM------------EVIGGLTNLTTLFL 318 (347)
T ss_dssp SCCCCCGGGT-TCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGH------------HHHHTCTTCSEEEC
T ss_pred CccCCChhHh-cCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcCh------------hHhhccccCCEEEc
Confidence 8775543334 7899999999999 88888889999999999999986543332 25677999999999
Q ss_pred CccccccccccCccCCCCccEEEecCCC
Q 045968 327 EDLPNLESIYWKPLPFTRLKEMAVLGCD 354 (402)
Q Consensus 327 ~~c~~l~~i~~~~~~~~~L~~L~i~~c~ 354 (402)
++|+ +..++. ...+++|++|++++|+
T Consensus 319 ~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 319 SQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCc-cccccC-hhhhhccceeehhhhc
Confidence 9986 555544 5568999999998875
No 3
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=4.6e-23 Score=202.98 Aligned_cols=240 Identities=19% Similarity=0.219 Sum_probs=147.7
Q ss_pred cCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 20 KRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
....+...+.++..++.+..+++|+.|++++|.+..++....+++|++|++++| .+..+++ +..+++|++|++++|
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n- 122 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNN- 122 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCC-
Confidence 346666777788888888889999999999999988877888999999999988 7777766 889999999999999
Q ss_pred ccccccccccccccccccEEEecCCCCccccHhhhcCCC---------------------CcEEEccCCCCccccchhhh
Q 045968 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVN---------------------LKCLNLRWTGALIRIPRQLI 158 (402)
Q Consensus 100 ~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~---------------------L~~L~l~~~~~~~~~~~~~l 158 (402)
.++.++. +..+. +|++|++++|.+..++. +..+++ |+.|++++| .++.++. +
T Consensus 123 -~l~~~~~-~~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l 195 (466)
T 1o6v_A 123 -QITDIDP-LKNLT-NLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--L 195 (466)
T ss_dssp -CCCCCGG-GTTCT-TCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--G
T ss_pred -CCCCChH-HcCCC-CCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--h
Confidence 8888765 77777 99999999887776643 444444 444444442 3333332 4
Q ss_pred hCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-
Q 045968 159 SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF- 237 (402)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~- 237 (402)
..+++|++|++.+|.+... ..+..+++|+.|.++++....+.. ...+++|+.|++++|
T Consensus 196 ~~l~~L~~L~l~~n~l~~~-----------------~~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDI-----------------TPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQ 254 (466)
T ss_dssp GGCTTCSEEECCSSCCCCC-----------------GGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSC
T ss_pred ccCCCCCEEEecCCccccc-----------------ccccccCCCCEEECCCCCcccchh----hhcCCCCCEEECCCCc
Confidence 4455555555554444321 113344455555554443332211 122334455554444
Q ss_pred -----------eeeeEeccccccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCC
Q 045968 238 -----------ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGC 293 (402)
Q Consensus 238 -----------~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c 293 (402)
+|++|+++++......+.. .+++|+.|++++| .++.++.+..+++|+.|++++|
T Consensus 255 l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 255 ISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp CCCCGGGTTCTTCSEEECCSSCCCCCGGGT-TCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS
T ss_pred cccchhhhcCCCCCEEECCCCccCcccccc-CCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC
Confidence 3444555444443333322 4555555555554 4444444455555555555554
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.7e-23 Score=202.78 Aligned_cols=332 Identities=19% Similarity=0.170 Sum_probs=233.3
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+.....++..+|.+ .+++++|++++|.+..++. ...+++|++|++++|.....+++..|..+++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n- 89 (455)
T 3v47_A 13 YNAICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN- 89 (455)
T ss_dssp TEEECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-
T ss_pred cccCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-
Confidence 4566677788888873 3799999999999988743 4889999999999994444677666999999999999999
Q ss_pred cccccc-ccccccccccccEEEecCCCCcc-ccHh--hhcCCCCcEEEccCCCCcccc-chhhhhCCCCCcEEEeeeecc
Q 045968 100 QGRLKL-PVGMSVLGSSLELLDISCTGITE-LPEE--LKKLVNLKCLNLRWTGALIRI-PRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 100 ~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 174 (402)
.+..+ |..++.+. +|++|++++|.+.. .+.. +..+++|++|++++| .++.+ |...+.++++|++|++.+|.+
T Consensus 90 -~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 90 -QFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp -TTCEECTTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred -ccCccChhhccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcc
Confidence 88876 77888898 99999999999975 3444 889999999999994 66665 444478999999999999987
Q ss_pred cccccCCCc-c--------cccCCcch----------hhHhhhcCCCCceEEEEecCchhh-HhhhhhhhhcccceeeEe
Q 045968 175 DRFHEAPED-S--------VLFGGGEV----------LIQELLGLKYLEVLELSLGSYHAL-QILLSSNKLKSCIRSLCL 234 (402)
Q Consensus 175 ~~~~~~~~~-~--------~~~~~~~~----------~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l 234 (402)
........+ . .++.+... ....+..+++|+.|+++++..... ............|+.|.+
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 643211000 0 00000000 001123446788888876544321 111111112256777776
Q ss_pred ccc--------------------------eeeeEeccccccccCCCCc-cccccccEEecccccCcccCc--ccccCCCC
Q 045968 235 DGF--------------------------ELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDVT--FLVFAPNL 285 (402)
Q Consensus 235 ~~~--------------------------~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L 285 (402)
+++ +|++|+++++......+.. ..+++|+.|++++| .++.++ .+..+++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHL 325 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChhHhcCcccC
Confidence 654 6888888887765554431 16889999999998 676653 67788999
Q ss_pred CEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccccc-ccCccCCCCccEEEecCCCCCCCCCCCCC
Q 045968 286 KSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESI-YWKPLPFTRLKEMAVLGCDQLEKLPVDSN 364 (402)
Q Consensus 286 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L~i~~c~~L~~lp~~~~ 364 (402)
++|++++|.. ..+. ...+..+++|+.|+++++ .+..+ +.....+++|++|+++++ +++.+|....
T Consensus 326 ~~L~Ls~N~l-~~~~-----------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 391 (455)
T 3v47_A 326 LKLNLSQNFL-GSID-----------SRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIF 391 (455)
T ss_dssp CEEECCSSCC-CEEC-----------GGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred CEEECCCCcc-CCcC-----------hhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHh
Confidence 9999999754 3321 135678899999999987 45554 445566899999999886 6888876554
Q ss_pred CCCCCeeEEE
Q 045968 365 SAKERKFVIR 374 (402)
Q Consensus 365 ~~~~~~~~~~ 374 (402)
....+++.+.
T Consensus 392 ~~l~~L~~L~ 401 (455)
T 3v47_A 392 DRLTSLQKIW 401 (455)
T ss_dssp TTCTTCCEEE
T ss_pred ccCCcccEEE
Confidence 3335666554
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1e-23 Score=202.80 Aligned_cols=276 Identities=16% Similarity=0.163 Sum_probs=215.7
Q ss_pred CCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-cccccccccc
Q 045968 39 GWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSS 115 (402)
Q Consensus 39 ~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~ 115 (402)
.+.+++.+++.++.+..+|.. ..+++|++|++++| .+..+++..|..+++|++|++++| .+..+ |..++.+. +
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~-~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVP-L 118 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCT-T
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCC--CCCcCCHHHhcCCC-C
Confidence 457899999999999998874 78999999999998 788888766999999999999999 88877 45578888 9
Q ss_pred ccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhh
Q 045968 116 LELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLI 194 (402)
Q Consensus 116 L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (402)
|++|++++|.+..+|.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+...
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------- 180 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV----------------- 180 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----------------
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCcc-----------------
Confidence 99999999999999887 48899999999999 577777765689999999999999887531
Q ss_pred HhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-----------eeeeEeccccccccCCCCcccccccc
Q 045968 195 QELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-----------ELEELKIDYTEIVRKRREPFVFRNLH 263 (402)
Q Consensus 195 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-----------~L~~L~i~~~~~~~~~~~~~~~~~L~ 263 (402)
.+..+++|+.|.++.+....+ .....|+.|+++++ +|++|+++++......... .+++|+
T Consensus 181 -~~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~-~l~~L~ 251 (390)
T 3o6n_A 181 -DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL-NYPGLV 251 (390)
T ss_dssp -CGGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGG-GCTTCS
T ss_pred -ccccccccceeeccccccccc-------CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHc-CCCCcc
Confidence 245667788888775543322 22346777777776 5777777777664443333 788999
Q ss_pred EEecccccCcccC--cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccC
Q 045968 264 RVTMVLCHKLKDV--TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLP 341 (402)
Q Consensus 264 ~L~l~~~~~l~~l--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~ 341 (402)
.|+++++ .++.+ ..+..+++|++|++++|.. +.++ .....+++|+.|+++++ .+..++.....
T Consensus 252 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 316 (390)
T 3o6n_A 252 EVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRL-VALN------------LYGQPIPTLKVLDLSHN-HLLHVERNQPQ 316 (390)
T ss_dssp EEECCSS-CCCEEESGGGTTCSSCCEEECCSSCC-CEEE------------CSSSCCTTCCEEECCSS-CCCCCGGGHHH
T ss_pred EEECCCC-cCCCcChhHccccccCCEEECCCCcC-cccC------------cccCCCCCCCEEECCCC-cceecCccccc
Confidence 9999988 66664 3677889999999998653 3332 24567899999999987 56677666667
Q ss_pred CCCccEEEecCCCCCCCCCC
Q 045968 342 FTRLKEMAVLGCDQLEKLPV 361 (402)
Q Consensus 342 ~~~L~~L~i~~c~~L~~lp~ 361 (402)
+++|+.|++++++ ++.+|.
T Consensus 317 l~~L~~L~L~~N~-i~~~~~ 335 (390)
T 3o6n_A 317 FDRLENLYLDHNS-IVTLKL 335 (390)
T ss_dssp HTTCSEEECCSSC-CCCCCC
T ss_pred cCcCCEEECCCCc-cceeCc
Confidence 8999999998874 777763
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=5.9e-23 Score=202.72 Aligned_cols=293 Identities=20% Similarity=0.194 Sum_probs=197.3
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+...+..+..+|.-- ..+++.|++++|.+..++. ...+++|++|++++| .+..+++..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n- 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN- 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-
Confidence 45666777888887522 3689999999999998754 488999999999998 788876666999999999999999
Q ss_pred cccccccc-ccccccccccEEEecCCCCccc-cHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968 100 QGRLKLPV-GMSVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF 177 (402)
Q Consensus 100 ~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 177 (402)
.++.+|. .|..+. +|++|++++|.+..+ +..+..+++|++|++++ +.++.++...+.++++|++|++.+|.+..
T Consensus 91 -~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 166 (477)
T 2id5_A 91 -RLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTS- 166 (477)
T ss_dssp -CCCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSS-
T ss_pred -cCCccCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcc-
Confidence 8998865 467788 999999999999876 44688999999999999 57777766568999999999999998753
Q ss_pred ccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--------------eeeeEe
Q 045968 178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--------------ELEELK 243 (402)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------------~L~~L~ 243 (402)
.....+..+++|+.|.+..+....+.. .....+..|+.|+++++ +|++|+
T Consensus 167 --------------~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 167 --------------IPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp --------------CCHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred --------------cChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 233457788999999998765544321 12333456666766654 455555
Q ss_pred ccccccccCCCC--ccccccccEEecccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCC
Q 045968 244 IDYTEIVRKRRE--PFVFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFE 319 (402)
Q Consensus 244 i~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~ 319 (402)
++++.....+.. . .+++|+.|+++++ .++.++ .+..+++|++|++++|..- .+. ...+..++
T Consensus 231 l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-----------~~~~~~l~ 296 (477)
T 2id5_A 231 ITHCNLTAVPYLAVR-HLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLA-VVE-----------PYAFRGLN 296 (477)
T ss_dssp EESSCCCSCCHHHHT-TCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCCS-EEC-----------TTTBTTCT
T ss_pred CcCCcccccCHHHhc-CccccCeeECCCC-cCCccChhhccccccCCEEECCCCccc-eEC-----------HHHhcCcc
Confidence 555444322211 1 3455555555555 344432 2445555555555554321 111 12444555
Q ss_pred ccceeecCccccccccccCc-cCCCCccEEEecC
Q 045968 320 NLQRLNLEDLPNLESIYWKP-LPFTRLKEMAVLG 352 (402)
Q Consensus 320 ~L~~L~l~~c~~l~~i~~~~-~~~~~L~~L~i~~ 352 (402)
+|+.|+++++ .+..++... ..+++|+.|++++
T Consensus 297 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 297 YLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp TCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence 6666666553 344443321 2345555555543
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.4e-22 Score=199.44 Aligned_cols=293 Identities=18% Similarity=0.220 Sum_probs=222.2
Q ss_pred cCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 20 KRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
....+...+..+..++.+..+++|+.|++++|.+..++....+++|++|++++| .+..++. +..+++|++|++++|
T Consensus 69 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n- 144 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSN- 144 (466)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEEEEEE-
T ss_pred CCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCC-CCCCChH--HcCCCCCCEEECCCC-
Confidence 346666777777777667888888888888888887777788888888888887 6777665 788888888888888
Q ss_pred cccccccc--------------------ccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhh
Q 045968 100 QGRLKLPV--------------------GMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLIS 159 (402)
Q Consensus 100 ~~i~~l~~--------------------~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~ 159 (402)
.+..++. .+..+. +|++|++++|.+..++ .+..+++|++|++++ +.++.++. +.
T Consensus 145 -~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~-n~l~~~~~--~~ 218 (466)
T 1o6v_A 145 -TISDISALSGLTSLQQLSFGNQVTDLKPLANLT-TLERLDISSNKVSDIS-VLAKLTNLESLIATN-NQISDITP--LG 218 (466)
T ss_dssp -EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCT-TCCEEECCSSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GG
T ss_pred -ccCCChhhccCCcccEeecCCcccCchhhccCC-CCCEEECcCCcCCCCh-hhccCCCCCEEEecC-Cccccccc--cc
Confidence 6655432 144556 8999999999888774 478899999999998 46666655 77
Q ss_pred CCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--
Q 045968 160 KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-- 237 (402)
Q Consensus 160 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-- 237 (402)
.+++|++|++.+|.+.. +..+..+++|+.|+++++....... ...++.|+.|.+++|
T Consensus 219 ~l~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKD-----------------IGTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQI 277 (466)
T ss_dssp GCTTCCEEECCSSCCCC-----------------CGGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCC
T ss_pred ccCCCCEEECCCCCccc-----------------chhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCcc
Confidence 89999999999887752 1346677888888887665544332 334557888888776
Q ss_pred ----------eeeeEeccccccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCC
Q 045968 238 ----------ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAE 307 (402)
Q Consensus 238 ----------~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 307 (402)
+|++|+++++......+.. .+++|+.|++++| .++.++.+..+++|+.|++++|.. ..+
T Consensus 278 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~-------- 346 (466)
T 1o6v_A 278 SNISPLAGLTALTNLELNENQLEDISPIS-NLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNKV-SDV-------- 346 (466)
T ss_dssp CCCGGGTTCTTCSEEECCSSCCSCCGGGG-GCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSCC-CCC--------
T ss_pred CccccccCCCccCeEEcCCCcccCchhhc-CCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCcc-CCc--------
Confidence 6888888888776666555 8999999999999 788887788999999999999854 322
Q ss_pred CccccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCCCC
Q 045968 308 TPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVD 362 (402)
Q Consensus 308 ~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~~ 362 (402)
..+..+++|+.|++++|. +..+.. ...+++|+.|++++|+ ++.+|..
T Consensus 347 -----~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 347 -----SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp -----GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE-EECCCBC
T ss_pred -----hhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc-ccCCchh
Confidence 256789999999999875 444443 5668999999998874 5555533
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2.6e-22 Score=203.88 Aligned_cols=148 Identities=21% Similarity=0.184 Sum_probs=117.0
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+...+.++..+|.-. .++++.|++++|.+..++. ...+++|++|++++| .+..+++..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n- 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGN- 90 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-
T ss_pred CceEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCC-
Confidence 45666777788887632 2789999999998888765 378899999999988 777776666888999999999998
Q ss_pred cccccc-ccccccccccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCcc--ccchhhhhCCCCCcEEEeeeeccc
Q 045968 100 QGRLKL-PVGMSVLGSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALI--RIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 100 ~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
.++.+ |..|+.+. +|++|++++|.+..++ ..++++++|++|++++| .++ .+|.. +.++++|++|++.+|.+.
T Consensus 91 -~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 91 -PIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp -CCCCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred -cccccChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcce
Confidence 78877 77788888 8999999998888776 45888889999999884 555 35664 888888888888887665
Q ss_pred c
Q 045968 176 R 176 (402)
Q Consensus 176 ~ 176 (402)
.
T Consensus 167 ~ 167 (606)
T 3vq2_A 167 T 167 (606)
T ss_dssp E
T ss_pred e
Confidence 4
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.5e-22 Score=200.56 Aligned_cols=147 Identities=22% Similarity=0.227 Sum_probs=98.3
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+...+.++..+|.. -.++++.|++++|.+..++. ...+++|++|++++| .+..+++..|.++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n- 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN- 86 (570)
T ss_dssp TEEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-
T ss_pred cEEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCC-
Confidence 3455566666777652 23567778887777776653 367777777777777 666666666777777777777777
Q ss_pred ccccccc-cccccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccc--cchhhhhCCCCCcEEEeeeeccc
Q 045968 100 QGRLKLP-VGMSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIR--IPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 100 ~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
.++.++ ..|+.+. +|++|++++|.+..++. .+..+++|++|++++| .++. +|.. +.++++|++|++.+|.+.
T Consensus 87 -~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 87 -PIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp -CCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred -cCCccCHhhhcCcc-ccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccc
Confidence 676663 5566666 77777777777766654 3667777777777773 4443 4543 667777777777666543
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=2.3e-22 Score=201.91 Aligned_cols=150 Identities=20% Similarity=0.249 Sum_probs=123.0
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
......+.++..+|..- .++++.|++++|.+..++. ...+++|++|++++| .+..+++..|..+++|++|++++|
T Consensus 8 ~~c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n- 84 (549)
T 2z81_A 8 GVCDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN- 84 (549)
T ss_dssp SEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-
T ss_pred ceEECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC-
Confidence 44455566777887633 3789999999999988743 488999999999998 777877666899999999999999
Q ss_pred cccccccc-ccccccccccEEEecCCCCccc--cHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccc
Q 045968 100 QGRLKLPV-GMSVLGSSLELLDISCTGITEL--PEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR 176 (402)
Q Consensus 100 ~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 176 (402)
.++.++. .++.+. +|++|++++|.+..+ |..+.++++|++|++++|..++.++...+.++++|++|++.+|.+..
T Consensus 85 -~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 85 -HLSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp -CCCSCCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred -ccCccCHHHhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 8888754 488888 999999999988854 56688999999999999766788876558999999999999988754
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=4.9e-22 Score=201.93 Aligned_cols=148 Identities=20% Similarity=0.131 Sum_probs=120.1
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+...+.++..+|..- .++++.|++++|.++.++. ...+++|++|++++| .+..+.+..|.++++|++|++++|
T Consensus 15 ~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n- 91 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN- 91 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-
T ss_pred ceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCC-
Confidence 45666777888887532 2589999999999998754 388999999999998 777776666999999999999999
Q ss_pred cccccc-ccccccccccccEEEecCCCCccc-cHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 100 QGRLKL-PVGMSVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 100 ~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
.+..+ |..++.+. +|++|++++|.+..+ +..+..+++|++|++++ +.++.++...+..+++|++|++.+|.+.
T Consensus 92 -~l~~~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 92 -PLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp -CCSEECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS-SCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred -cccccChhhhcccc-cccEeeccccCcccCCcchhccCCcccEEECCC-CcccccCcccccCCcccCEEEcccCccc
Confidence 88776 67788888 999999999999887 45688999999999999 5677653222566999999999998774
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=7.2e-22 Score=200.65 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=37.2
Q ss_pred ccCCccceEEEccCCccccc--CCCCCCCccceEeccccccccccchHHhccCCCCC--EEEccCC
Q 045968 37 VKGWENVRRLSLMQNQIETV--SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLK--VLKMSNC 98 (402)
Q Consensus 37 ~~~~~~l~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~--~L~l~~~ 98 (402)
+..+++|+.|++++|.+..+ +....+++|++|++++| .+..+++..+..+++|+ .|++++|
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCC
Confidence 44555666666666666554 33345667777777766 55555555566677666 6666666
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=4.3e-22 Score=196.53 Aligned_cols=282 Identities=18% Similarity=0.169 Sum_probs=218.6
Q ss_pred eEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEec
Q 045968 44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDIS 122 (402)
Q Consensus 44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~ 122 (402)
+.++..++.+..+|... .++++.|++++| .+..+++..|..+++|++|++++| .++.+ |..|..+. +|++|+++
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~-~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNEN--IVSAVEPGAFNNLF-NLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCT-TCCEEECC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCC--ccCEeChhhhhCCc-cCCEEECC
Confidence 46777788888887642 368999999998 888887766999999999999999 88877 77888898 99999999
Q ss_pred CCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCC
Q 045968 123 CTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLK 201 (402)
Q Consensus 123 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 201 (402)
+|.+..+|.. +..+++|++|++++ +.++.++...+.++++|++|++.++.+.. .....+..++
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~ 152 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVY---------------ISHRAFSGLN 152 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEEECCTTCCE---------------ECTTSSTTCT
T ss_pred CCcCCccCcccccCCCCCCEEECCC-CccccCChhHccccccCCEEECCCCccce---------------eChhhccCCC
Confidence 9999999876 68899999999999 57777665568999999999999988743 2234567889
Q ss_pred CCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--------------eeeeEeccccccccCCCC-ccccccccEEe
Q 045968 202 YLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--------------ELEELKIDYTEIVRKRRE-PFVFRNLHRVT 266 (402)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------------~L~~L~i~~~~~~~~~~~-~~~~~~L~~L~ 266 (402)
+|+.|.++.+....+.. .....+++|+.|.++++ +|++|+++++......+. .....+|+.|+
T Consensus 153 ~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp TCCEEEEESCCCSSCCH--HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCEEECCCCcCcccCh--hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 99999999776554331 22344568999999887 677777777554333332 21345899999
Q ss_pred cccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccccc-ccCccCCC
Q 045968 267 MVLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESI-YWKPLPFT 343 (402)
Q Consensus 267 l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i-~~~~~~~~ 343 (402)
+++| .++.++ .+..+++|+.|++++|.. +.+. ...+..+++|+.|+++++ .+..+ +.....++
T Consensus 231 l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~-----------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 296 (477)
T 2id5_A 231 ITHC-NLTAVPYLAVRHLVYLRFLNLSYNPI-STIE-----------GSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLN 296 (477)
T ss_dssp EESS-CCCSCCHHHHTTCTTCCEEECCSSCC-CEEC-----------TTSCTTCTTCCEEECCSS-CCSEECTTTBTTCT
T ss_pred CcCC-cccccCHHHhcCccccCeeECCCCcC-CccC-----------hhhccccccCCEEECCCC-ccceECHHHhcCcc
Confidence 9998 788876 577899999999999763 3332 135778999999999986 45444 34455689
Q ss_pred CccEEEecCCCCCCCCCCCC
Q 045968 344 RLKEMAVLGCDQLEKLPVDS 363 (402)
Q Consensus 344 ~L~~L~i~~c~~L~~lp~~~ 363 (402)
+|+.|+++++ +++.+|...
T Consensus 297 ~L~~L~L~~N-~l~~~~~~~ 315 (477)
T 2id5_A 297 YLRVLNVSGN-QLTTLEESV 315 (477)
T ss_dssp TCCEEECCSS-CCSCCCGGG
T ss_pred cCCEEECCCC-cCceeCHhH
Confidence 9999999887 678877544
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=6.1e-22 Score=201.19 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=105.0
Q ss_pred cCcEEEEeCCccccCC--CccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEc
Q 045968 20 KRNFLVRAGAGLKEAP--DVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM 95 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 95 (402)
....+...+..+..++ .+.++++|++|++++|.+..++. ...+++|++|++++| .+..+++..|.++++|++|++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEEC
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEc
Confidence 3466666776776664 47788999999999999888754 378999999999988 677775555899999999999
Q ss_pred cCCCccccccc-cccccccccccEEEecCCCCc--cccHhhhcCCCCcEEEccCCCCccccc
Q 045968 96 SNCGQGRLKLP-VGMSVLGSSLELLDISCTGIT--ELPEELKKLVNLKCLNLRWTGALIRIP 154 (402)
Q Consensus 96 ~~~~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~ 154 (402)
++| .+..++ ..++.+. +|++|++++|.+. .+|..+.++++|++|++++| .++.++
T Consensus 112 ~~n--~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~ 169 (606)
T 3vq2_A 112 VET--KLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTIT 169 (606)
T ss_dssp TTS--CCCCSSSSCCTTCT-TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEEC
T ss_pred cCC--ccccccccccCCCC-CCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecC
Confidence 999 888774 6788888 9999999999887 47888999999999999884 555543
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=4.3e-22 Score=191.47 Aligned_cols=285 Identities=19% Similarity=0.263 Sum_probs=207.6
Q ss_pred cCcEEEEeCCccccCCC--ccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEc
Q 045968 20 KRNFLVRAGAGLKEAPD--VKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM 95 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 95 (402)
....+.+....+..+|. +..+++|+.|++++|.+..++. ...+++|++|++++| .+..+++..+..+++|++|++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEEC
Confidence 34667777777777776 6778999999999999998764 488999999999999 788888777899999999999
Q ss_pred cCCCccccccccc-cccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeec
Q 045968 96 SNCGQGRLKLPVG-MSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIG 173 (402)
Q Consensus 96 ~~~~~~i~~l~~~-~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 173 (402)
++| .++.+|.. +..+. +|++|++++|.+..++. .+..+++|++|++++ +.++.++ +..+++|++|++.++.
T Consensus 125 ~~n--~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 125 ERN--DLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp CSS--CCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCSSC
T ss_pred CCC--ccCcCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccccc
Confidence 999 89988765 57788 99999999999988755 488999999999999 5777765 5668889999888876
Q ss_pred ccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc------------eeee
Q 045968 174 YDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF------------ELEE 241 (402)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------~L~~ 241 (402)
+... ...+.|+.|.++++....++. .....|+.|.+++| +|++
T Consensus 198 l~~~--------------------~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~ 252 (390)
T 3o6n_A 198 LSTL--------------------AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDTAWLLNYPGLVE 252 (390)
T ss_dssp CSEE--------------------ECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred cccc--------------------CCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCcccHHHcCCCCccE
Confidence 6431 122234444443332221110 11123444444433 5666
Q ss_pred EeccccccccCCCCc-cccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCC
Q 045968 242 LKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFE 319 (402)
Q Consensus 242 L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~ 319 (402)
|+++++......+.. ..+++|+.|+++++ .++.++ ....+++|++|++++|.. ..++ ..+..++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l-~~~~------------~~~~~l~ 318 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LHVE------------RNQPQFD 318 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCC-CCCG------------GGHHHHT
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcc-eecC------------ccccccC
Confidence 666666554433321 16899999999998 777775 345789999999999854 3333 2456789
Q ss_pred ccceeecCccccccccccCccCCCCccEEEecCCC
Q 045968 320 NLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCD 354 (402)
Q Consensus 320 ~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~ 354 (402)
+|+.|+++++. +..++ ...+++|+.|++++++
T Consensus 319 ~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 319 RLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred cCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 99999999964 56554 4557888888887653
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.3e-22 Score=205.83 Aligned_cols=277 Identities=16% Similarity=0.163 Sum_probs=215.9
Q ss_pred CCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc-ccccccccc
Q 045968 39 GWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGSS 115 (402)
Q Consensus 39 ~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~ 115 (402)
.+.+++.+++.++.+..+|.. ..+++|++|++++| .+..+++..|..+++|++|++++| .+..++ ..|+.+. +
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~-~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVP-L 124 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCT-T
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC--cCCCCCHHHHcCCC-C
Confidence 356889999999999988874 67899999999998 788887766999999999999999 888874 4568888 9
Q ss_pred ccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhh
Q 045968 116 LELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLI 194 (402)
Q Consensus 116 L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (402)
|++|++++|.+..+|.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+...
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------- 186 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV----------------- 186 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECTTSCCSBC-----------------
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC-CcCCCCChhhhhcCCcCcEEECcCCCCCCc-----------------
Confidence 99999999999999877 58999999999999 577777765689999999999999887531
Q ss_pred HhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-----------eeeeEeccccccccCCCCcccccccc
Q 045968 195 QELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-----------ELEELKIDYTEIVRKRREPFVFRNLH 263 (402)
Q Consensus 195 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-----------~L~~L~i~~~~~~~~~~~~~~~~~L~ 263 (402)
.+..+++|+.|.++++....+ ..+..|+.|++++| +|+.|+++++......... .+++|+
T Consensus 187 -~~~~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~-~l~~L~ 257 (597)
T 3oja_B 187 -DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL-NYPGLV 257 (597)
T ss_dssp -CGGGCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG-GCTTCS
T ss_pred -ChhhhhhhhhhhcccCccccc-------cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc-cCCCCC
Confidence 245577788888775543322 22346777777776 5778888877665443334 788999
Q ss_pred EEecccccCcccC--cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccC
Q 045968 264 RVTMVLCHKLKDV--TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLP 341 (402)
Q Consensus 264 ~L~l~~~~~l~~l--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~ 341 (402)
.|++++| .++.+ ..+..+++|+.|++++|.. ..++ .....+|+|+.|++++| .+..++.....
T Consensus 258 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~------------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~ 322 (597)
T 3oja_B 258 EVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRL-VALN------------LYGQPIPTLKVLDLSHN-HLLHVERNQPQ 322 (597)
T ss_dssp EEECCSS-CCCEEESGGGTTCSSCCEEECTTSCC-CEEE------------CSSSCCTTCCEEECCSS-CCCCCGGGHHH
T ss_pred EEECCCC-ccCCCCHHHhcCccCCCEEECCCCCC-CCCC------------cccccCCCCcEEECCCC-CCCccCccccc
Confidence 9999998 66664 3677899999999999754 3332 34567899999999986 56677766677
Q ss_pred CCCccEEEecCCCCCCCCCCC
Q 045968 342 FTRLKEMAVLGCDQLEKLPVD 362 (402)
Q Consensus 342 ~~~L~~L~i~~c~~L~~lp~~ 362 (402)
+++|+.|++++|. +..+|..
T Consensus 323 l~~L~~L~L~~N~-l~~~~~~ 342 (597)
T 3oja_B 323 FDRLENLYLDHNS-IVTLKLS 342 (597)
T ss_dssp HTTCSEEECCSSC-CCCCCCC
T ss_pred CCCCCEEECCCCC-CCCcChh
Confidence 8999999998874 7777633
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.4e-22 Score=206.98 Aligned_cols=314 Identities=11% Similarity=0.100 Sum_probs=208.5
Q ss_pred CCC-ccCCccceEEEccCCcccc------------------cCCC-C--CCCccceEeccccccccccchHHhccCCCCC
Q 045968 34 APD-VKGWENVRRLSLMQNQIET------------------VSEV-P--TCPHLLTLFLDFNQELEMIADGFFQLMPSLK 91 (402)
Q Consensus 34 ~~~-~~~~~~l~~L~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 91 (402)
+|. +..+++|+.|++++|.+.. +|.. . .+++|++|++++|.....+|.. +.++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCC
Confidence 443 6778899999999998887 7765 5 7999999999998555667766 88999999
Q ss_pred EEEccCCCcc-ccc--cccccccc------cccccEEEecCCCCccccH--hhhcCCCCcEEEccCCCCcc-ccchhhhh
Q 045968 92 VLKMSNCGQG-RLK--LPVGMSVL------GSSLELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALI-RIPRQLIS 159 (402)
Q Consensus 92 ~L~l~~~~~~-i~~--l~~~~~~l------~~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~-~~~~~~l~ 159 (402)
+|++++| . ++. +|..++.+ . +|++|++++|.+..+|. .+..+++|++|++++| .++ .+| . +.
T Consensus 277 ~L~Ls~n--~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~-~~ 350 (636)
T 4eco_A 277 LINVACN--RGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-A-FG 350 (636)
T ss_dssp EEECTTC--TTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-C-CE
T ss_pred EEECcCC--CCCccccchHHHHhhhccccCC-CCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-h-hC
Confidence 9999999 6 774 78877776 6 99999999999989988 7899999999999984 566 788 3 88
Q ss_pred CCCCCcEEEeeeecccccccCCCc-------ccccCCcchhhH-hhhc--CCCCceEEEEecCchhhHhhhhhhh-----
Q 045968 160 KFSRLRVLRMFAIGYDRFHEAPED-------SVLFGGGEVLIQ-ELLG--LKYLEVLELSLGSYHALQILLSSNK----- 224 (402)
Q Consensus 160 ~l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~----- 224 (402)
.+++|++|++.+|.+...+..+.+ ..++.+....+. .+.. +++|+.|+++.+..... .+....
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV--DGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT--TTCSSCTTCSS
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCc--chhhhcccccc
Confidence 888888888888876532211111 011111111111 1111 22455555554332211 011111
Q ss_pred --hcccceeeEeccc--------------eeeeEeccccccccCCCCccc--------cccccEEecccccCcccCc-cc
Q 045968 225 --LKSCIRSLCLDGF--------------ELEELKIDYTEIVRKRREPFV--------FRNLHRVTMVLCHKLKDVT-FL 279 (402)
Q Consensus 225 --~~~~L~~L~l~~~--------------~L~~L~i~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~l~~l~-~~ 279 (402)
...+|+.|++++| +|++|+++++.....+...+. +++|+.|++++| .++.++ .+
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~ 507 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDF 507 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhh
Confidence 2336777777766 577777777666533332211 127888888887 666765 34
Q ss_pred c--cCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCc------cccccccccCccCCCCccEEEec
Q 045968 280 V--FAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLED------LPNLESIYWKPLPFTRLKEMAVL 351 (402)
Q Consensus 280 ~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~i~~~~~~~~~L~~L~i~ 351 (402)
. .+++|++|++++|..-. ++ ..+..+++|+.|++++ +.-...++.....+++|++|+++
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~-ip------------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSK-FP------------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp STTTCTTCCEEECCSSCCSS-CC------------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred hhccCCCcCEEECCCCCCCC-cC------------hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 4 78888888888865432 32 3556788999999854 33345566666678999999998
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEE
Q 045968 352 GCDQLEKLPVDSNSAKERKFVIR 374 (402)
Q Consensus 352 ~c~~L~~lp~~~~~~~~~~~~~~ 374 (402)
++. ++.+|.... .+++.++
T Consensus 575 ~N~-l~~ip~~~~---~~L~~L~ 593 (636)
T 4eco_A 575 SND-IRKVNEKIT---PNISVLD 593 (636)
T ss_dssp SSC-CCBCCSCCC---TTCCEEE
T ss_pred CCc-CCccCHhHh---CcCCEEE
Confidence 875 588886533 4555554
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=4.2e-22 Score=208.09 Aligned_cols=317 Identities=11% Similarity=0.084 Sum_probs=206.4
Q ss_pred CC-CccCCccceEEEccCCcccc------------------cCCC-C--CCCccceEeccccccccccchHHhccCCCCC
Q 045968 34 AP-DVKGWENVRRLSLMQNQIET------------------VSEV-P--TCPHLLTLFLDFNQELEMIADGFFQLMPSLK 91 (402)
Q Consensus 34 ~~-~~~~~~~l~~L~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 91 (402)
+| .+..+++|+.|++++|.+.. +|.. . .+++|++|++++|.....+|.. +.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCC
Confidence 54 37778899999999998887 7765 4 7999999999998556667765 89999999
Q ss_pred EEEccCCCcc-ccc--ccccccccc------ccccEEEecCCCCccccH--hhhcCCCCcEEEccCCCCccccchhhhhC
Q 045968 92 VLKMSNCGQG-RLK--LPVGMSVLG------SSLELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALIRIPRQLISK 160 (402)
Q Consensus 92 ~L~l~~~~~~-i~~--l~~~~~~l~------~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~l~~ 160 (402)
+|++++| . ++. +|..++.+. |+|++|++++|.+..+|. .+.++++|+.|++++ +.++.+| . +..
T Consensus 519 ~L~Ls~N--~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~-N~l~~lp-~-~~~ 593 (876)
T 4ecn_A 519 SLNIACN--RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NKVRHLE-A-FGT 593 (876)
T ss_dssp EEECTTC--TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTT-SCCCBCC-C-CCT
T ss_pred EEECcCC--CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCC-CCcccch-h-hcC
Confidence 9999999 6 664 676555432 389999999999989988 789999999999998 4667888 3 888
Q ss_pred CCCCcEEEeeeecccccccCCCc-------ccccCCcchhhH-hhhcC--CCCceEEEEecCchhh-Hhhhhhhh--hcc
Q 045968 161 FSRLRVLRMFAIGYDRFHEAPED-------SVLFGGGEVLIQ-ELLGL--KYLEVLELSLGSYHAL-QILLSSNK--LKS 227 (402)
Q Consensus 161 l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~l~~l--~~L~~L~l~~~~~~~~-~~~~~~~~--~~~ 227 (402)
+++|++|++.+|.+...+..+.+ ..++.+....+. .+..+ ++|+.|.++.+..... +.++.... ...
T Consensus 594 L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp TSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 99999999998887532211111 011111110111 11111 2244555543332211 11111111 112
Q ss_pred cceeeEeccc--------------eeeeEeccccccccCCCCcc--------ccccccEEecccccCcccCc-ccc--cC
Q 045968 228 CIRSLCLDGF--------------ELEELKIDYTEIVRKRREPF--------VFRNLHRVTMVLCHKLKDVT-FLV--FA 282 (402)
Q Consensus 228 ~L~~L~l~~~--------------~L~~L~i~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~l~~l~-~~~--~l 282 (402)
+|+.|++++| +|+.|+++++.....+...+ .+++|+.|++++| .++.++ .+. .+
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l 752 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTL 752 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTC
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccC
Confidence 5667777666 56777777665543332211 1237888888887 676765 343 68
Q ss_pred CCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcc------ccccccccCccCCCCccEEEecCCCCC
Q 045968 283 PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDL------PNLESIYWKPLPFTRLKEMAVLGCDQL 356 (402)
Q Consensus 283 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c------~~l~~i~~~~~~~~~L~~L~i~~c~~L 356 (402)
++|+.|++++|..- .++ ..+..+++|+.|+++++ .-...++.....+++|+.|++++|. +
T Consensus 753 ~~L~~L~Ls~N~L~-~lp------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L 818 (876)
T 4ecn_A 753 PYLSNMDVSYNCFS-SFP------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-I 818 (876)
T ss_dssp TTCCEEECCSSCCS-SCC------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-C
T ss_pred CCcCEEEeCCCCCC-ccc------------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-C
Confidence 88888888886542 232 35667888999988763 3335556566678999999998874 5
Q ss_pred CCCCCCCCCCCCCeeEEE
Q 045968 357 EKLPVDSNSAKERKFVIR 374 (402)
Q Consensus 357 ~~lp~~~~~~~~~~~~~~ 374 (402)
..+|.... ++++.++
T Consensus 819 ~~Ip~~l~---~~L~~Ld 833 (876)
T 4ecn_A 819 RKVDEKLT---PQLYILD 833 (876)
T ss_dssp CBCCSCCC---SSSCEEE
T ss_pred CccCHhhc---CCCCEEE
Confidence 88886633 3454444
No 19
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.4e-22 Score=197.05 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=68.1
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcc
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 101 (402)
..+......+..+|.+..+++|+.|++++|.+..++ ...+++|++|++++| .+..++ +..+++|++|++++| .
T Consensus 45 ~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N--~ 117 (457)
T 3bz5_A 45 TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTN--K 117 (457)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSS--C
T ss_pred CEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCC--c
Confidence 334444444444444555555555555555555443 444555555555554 344432 445555555555555 4
Q ss_pred ccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 102 RLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 102 i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
++.++ ++.+. +|++|++++|.+..++ +..+++|++|++++|..+..++ +..+++|++|++.+|.+
T Consensus 118 l~~l~--~~~l~-~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 118 LTKLD--VSQNP-LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CSCCC--CTTCT-TCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCC
T ss_pred CCeec--CCCCC-cCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcc
Confidence 44443 44444 5555555555555442 4455555555555543444442 34455555555555544
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=3.8e-21 Score=191.80 Aligned_cols=143 Identities=19% Similarity=0.240 Sum_probs=119.9
Q ss_pred CcEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968 21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98 (402)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 98 (402)
+..+...+..+..+|..-. +++++|++++|.+..++. ...+++|++|++++| .+..+++..|.++++|++|++++|
T Consensus 2 ~~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CCEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred cceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence 3566777788888876333 899999999999988764 488999999999999 788876666999999999999999
Q ss_pred CccccccccccccccccccEEEecCCCCcc--ccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCC--cEEEeeeecc
Q 045968 99 GQGRLKLPVGMSVLGSSLELLDISCTGITE--LPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRL--RVLRMFAIGY 174 (402)
Q Consensus 99 ~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 174 (402)
.++.+|.. .+. +|++|++++|.+.. +|..++.+++|++|++++ +.++.. .+..+++| ++|++.+|.+
T Consensus 80 --~l~~lp~~--~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 --KLVKISCH--PTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST-THLEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp --CCCEEECC--CCC-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEE-SSCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred --ceeecCcc--ccC-CccEEeccCCccccccchhhhccCCcceEEEecC-cccchh---hccccccceeeEEEeecccc
Confidence 89988876 677 99999999999986 567899999999999999 456552 26777888 9999999877
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=9.7e-22 Score=205.04 Aligned_cols=145 Identities=23% Similarity=0.244 Sum_probs=79.3
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccc-cCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIET-VSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (402)
..+......+........+++|+.|++++|.+.. ++....+++|++|++++| .+....+..+..+++|++|++++|
T Consensus 181 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n-- 257 (768)
T 3rgz_A 181 KHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSN-- 257 (768)
T ss_dssp CEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSS--
T ss_pred CEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCC--
Confidence 3334444344333344566777777777776665 344567778888888877 554433334777777777777777
Q ss_pred ccccc-ccccccccccccEEEecCCCCc-cccHhhhcC-CCCcEEEccCCCCcc-ccchhhhhCCCCCcEEEeeeecc
Q 045968 101 GRLKL-PVGMSVLGSSLELLDISCTGIT-ELPEELKKL-VNLKCLNLRWTGALI-RIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 101 ~i~~l-~~~~~~l~~~L~~L~L~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
.+... |.. .+. +|++|++++|.+. .+|..+... ++|++|++++| .++ .+|.. +.++++|++|++.+|.+
T Consensus 258 ~l~~~~~~~--~l~-~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 258 QFVGPIPPL--PLK-SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPF-FGSCSLLESLALSSNNF 330 (768)
T ss_dssp CCEESCCCC--CCT-TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGG-GGGCTTCCEEECCSSEE
T ss_pred cccCccCcc--ccC-CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchH-HhcCCCccEEECCCCcc
Confidence 55532 221 333 5555555555444 444444332 55555555553 222 23332 55555555555555544
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=8e-22 Score=185.41 Aligned_cols=261 Identities=19% Similarity=0.234 Sum_probs=178.4
Q ss_pred cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEE
Q 045968 42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLD 120 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~ 120 (402)
+++.++++++.+..+|... .+++++|++++| .+..+++..|..+++|++|++++| .++.+ |..+..+. +|++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~-~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN--KISKIHEKAFSPLR-KLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS--CCCEECGGGSTTCT-TCCEEE
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC--ccCccCHhHhhCcC-CCCEEE
Confidence 6888999998888877543 478999999988 777777666899999999999999 88877 67788888 999999
Q ss_pred ecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL 200 (402)
Q Consensus 121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 200 (402)
+++|.+..+|..+. ++|++|++++ +.++.++...+.++++|++|++.++.+... ......+..+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l 172 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENS-------------GFEPGAFDGL 172 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGG-------------GSCTTSSCSC
T ss_pred CCCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccC-------------CCCcccccCC
Confidence 99999988887654 7899999998 577888876688999999999998877421 1112234444
Q ss_pred CCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCC-ccccccccEEecccccCcccCc--
Q 045968 201 KYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRRE-PFVFRNLHRVTMVLCHKLKDVT-- 277 (402)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~-- 277 (402)
+|+.|.++.+....++ .. ..+.|+.|+++ ++......+. -..+++|+.|+++++ .++.++
T Consensus 173 -~L~~L~l~~n~l~~l~---~~--~~~~L~~L~l~----------~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~ 235 (332)
T 2ft3_A 173 -KLNYLRISEAKLTGIP---KD--LPETLNELHLD----------HNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENG 235 (332)
T ss_dssp -CCSCCBCCSSBCSSCC---SS--SCSSCSCCBCC----------SSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT
T ss_pred -ccCEEECcCCCCCccC---cc--ccCCCCEEECC----------CCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChh
Confidence 6778888765544322 11 11344444444 4433222221 115677778888777 566653
Q ss_pred ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCcc-------CCCCccEEEe
Q 045968 278 FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPL-------PFTRLKEMAV 350 (402)
Q Consensus 278 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~-------~~~~L~~L~i 350 (402)
.+..+++|++|++++|.. +.++ ..+..+++|+.|+++++ .+..++.... .+++|+.|++
T Consensus 236 ~~~~l~~L~~L~L~~N~l-~~lp------------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKL-SRVP------------AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp GGGGCTTCCEEECCSSCC-CBCC------------TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred HhhCCCCCCEEECCCCcC-eecC------------hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEe
Confidence 466777888888877643 2332 24566777888888774 4544443211 1466777777
Q ss_pred cCCC
Q 045968 351 LGCD 354 (402)
Q Consensus 351 ~~c~ 354 (402)
.+++
T Consensus 302 ~~N~ 305 (332)
T 2ft3_A 302 FNNP 305 (332)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 7765
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=6.5e-22 Score=202.02 Aligned_cols=208 Identities=15% Similarity=0.258 Sum_probs=131.9
Q ss_pred CCCCccceEeccccccccc------------------cchHHhc--cCCCCCEEEccCCCcccc-ccccccccccccccE
Q 045968 60 PTCPHLLTLFLDFNQELEM------------------IADGFFQ--LMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLEL 118 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~------------------~~~~~~~--~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~~ 118 (402)
..+++|++|++++| .+.. +|.. +. ++++|++|++++| .+. .+|..++.+. +|++
T Consensus 203 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~-~L~~ 277 (636)
T 4eco_A 203 MRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNC--PNLTKLPTFLKALP-EMQL 277 (636)
T ss_dssp GGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECC--TTCSSCCTTTTTCS-SCCE
T ss_pred hcccCCCEEECcCC-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCC--cCCccChHHHhcCC-CCCE
Confidence 67888899999888 5666 7766 66 8889999999988 554 5688888888 8999
Q ss_pred EEecCCC-Cc--cccHhhhcC------CCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeeccc-ccccCCCccccc
Q 045968 119 LDISCTG-IT--ELPEELKKL------VNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYD-RFHEAPEDSVLF 187 (402)
Q Consensus 119 L~L~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~ 187 (402)
|++++|. +. .+|..++.+ ++|++|++++ +.++.+|. ..+.++++|++|++.+|.+. ..+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--------- 347 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--------- 347 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC---------
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCCccCchhhhccCCCCCEEeCcCCcCccchh---------
Confidence 9999887 76 478877776 8899999988 46668886 13888999999998888775 211
Q ss_pred CCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhccc-ceeeEeccc---------------eeeeEecccccccc
Q 045968 188 GGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSC-IRSLCLDGF---------------ELEELKIDYTEIVR 251 (402)
Q Consensus 188 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~---------------~L~~L~i~~~~~~~ 251 (402)
.+..+++|+.|.++.+... .++........ |+.|++++| +|++|+++++....
T Consensus 348 --------~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 348 --------AFGSEIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp --------CCEEEEEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred --------hhCCCCCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC
Confidence 3444455555555543322 22222222333 555555554 35555555554433
Q ss_pred CCCCc--------cccccccEEecccccCcccCcc--cccCCCCCEEeecCCc
Q 045968 252 KRREP--------FVFRNLHRVTMVLCHKLKDVTF--LVFAPNLKSLDLDGCD 294 (402)
Q Consensus 252 ~~~~~--------~~~~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~c~ 294 (402)
..|.. ..+++|+.|++++| .++.++. +..+++|++|++++|.
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred cchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC
Confidence 22211 02335666666665 4445432 3345666666666543
No 24
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.7e-21 Score=190.90 Aligned_cols=214 Identities=15% Similarity=0.149 Sum_probs=157.4
Q ss_pred CccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccccccccc
Q 045968 36 DVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSS 115 (402)
Q Consensus 36 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~ 115 (402)
.+..+++++.|+++++.+..+|....+++|++|++++| .+..++ +..+++|++|++++| .++.++ ++.+. +
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N--~l~~~~--~~~l~-~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSN--KLTNLD--VTPLT-K 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSS--CCSCCC--CTTCT-T
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCC--CCceee--cCCCC-c
Confidence 45667899999999999999887889999999999999 777774 789999999999999 888875 77788 9
Q ss_pred ccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhH
Q 045968 116 LELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQ 195 (402)
Q Consensus 116 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (402)
|++|++++|.+..+| +..+++|++|++++ +.++.++ +.++++|++|++.+|..... .
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~~~~--------------~--- 164 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLNKKITK--------------L--- 164 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTCSCCCC--------------C---
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCCCcccc--------------c---
Confidence 999999999999886 88999999999999 5777774 77899999999999854321 1
Q ss_pred hhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-----------eeeeEeccccccccCCCCccccccccE
Q 045968 196 ELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-----------ELEELKIDYTEIVRKRREPFVFRNLHR 264 (402)
Q Consensus 196 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-----------~L~~L~i~~~~~~~~~~~~~~~~~L~~ 264 (402)
.+..+++|+.|+++.+....++ ....+.|+.|.+++| +|++|+++++.... +|.. .+++|+.
T Consensus 165 ~~~~l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip~~-~l~~L~~ 237 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-IDVT-PLTQLTY 237 (457)
T ss_dssp CCTTCTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CCCT-TCTTCSE
T ss_pred ccccCCcCCEEECCCCccceec-----cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cCcc-ccCCCCE
Confidence 2455666777777655444432 223345666666655 56666666665544 2333 5777777
Q ss_pred EecccccCcccCcccccCCCCCEEee
Q 045968 265 VTMVLCHKLKDVTFLVFAPNLKSLDL 290 (402)
Q Consensus 265 L~l~~~~~l~~l~~~~~l~~L~~L~l 290 (402)
|+++++ .++.++ ...+++|+.|++
T Consensus 238 L~l~~N-~l~~~~-~~~l~~L~~L~l 261 (457)
T 3bz5_A 238 FDCSVN-PLTELD-VSTLSKLTTLHC 261 (457)
T ss_dssp EECCSS-CCSCCC-CTTCTTCCEEEC
T ss_pred EEeeCC-cCCCcC-HHHCCCCCEEec
Confidence 777776 555543 333444443333
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.2e-21 Score=198.65 Aligned_cols=283 Identities=19% Similarity=0.269 Sum_probs=206.3
Q ss_pred cEEEEeCCccccCCC--ccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccC
Q 045968 22 NFLVRAGAGLKEAPD--VKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN 97 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~ 97 (402)
..+.+....+..+|. +..+++|+.|++++|.+..++. ...+++|++|++++| .+..+++..|..+++|++|++++
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeC
Confidence 555566666666665 5678899999999999998764 488999999999999 78888887789999999999999
Q ss_pred CCccccccccc-cccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 98 CGQGRLKLPVG-MSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 98 ~~~~i~~l~~~-~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
| .++.+|.. |+.+. +|++|++++|.+..++. .+..+++|++|++++ +.++.++ +..+++|++|++.++.+.
T Consensus 133 n--~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 133 N--DLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp S--CCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred C--CCCCCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccCccc
Confidence 9 89988765 57788 99999999999987765 588999999999999 5777775 456889999998887764
Q ss_pred ccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc------------eeeeEe
Q 045968 176 RFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF------------ELEELK 243 (402)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------~L~~L~ 243 (402)
.. ...+.|+.|.++++....+.. ....+|+.|.+++| +|++|+
T Consensus 206 ~l--------------------~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~ 260 (597)
T 3oja_B 206 TL--------------------AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDTAWLLNYPGLVEVD 260 (597)
T ss_dssp EE--------------------ECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred cc--------------------cCCchhheeeccCCccccccc-----ccCCCCCEEECCCCCCCCChhhccCCCCCEEE
Confidence 31 222334444444332221110 01123444444443 566666
Q ss_pred ccccccccCCCCc-cccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCcc
Q 045968 244 IDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENL 321 (402)
Q Consensus 244 i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L 321 (402)
++++......+.. ..+++|+.|++++| .++.++ ....+++|+.|++++|... .++ ..+..+++|
T Consensus 261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~------------~~~~~l~~L 326 (597)
T 3oja_B 261 LSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVE------------RNQPQFDRL 326 (597)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCG------------GGHHHHTTC
T ss_pred CCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccC------------cccccCCCC
Confidence 6666554443321 16889999999998 777775 3456899999999997643 333 245678999
Q ss_pred ceeecCccccccccccCccCCCCccEEEecCCC
Q 045968 322 QRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCD 354 (402)
Q Consensus 322 ~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~ 354 (402)
+.|++++|. +..++ ...+++|+.|++++++
T Consensus 327 ~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 327 ENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp SEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 999999864 55554 4557999999998765
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.7e-20 Score=188.84 Aligned_cols=142 Identities=21% Similarity=0.276 Sum_probs=114.5
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+...+.++..+|..- .++++.|++++|.+..++. ...+++|++|++++| .+..+++..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS-
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC-
Confidence 56777777888887532 3789999999999988763 488999999999988 788876666899999999999999
Q ss_pred ccccccccccccccccccEEEecCCCCcccc--HhhhcCCCCcEEEccCCCCccccchhhhhCCCCC--cEEEeeeecc
Q 045968 100 QGRLKLPVGMSVLGSSLELLDISCTGITELP--EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRL--RVLRMFAIGY 174 (402)
Q Consensus 100 ~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 174 (402)
.++.+|.. .+. +|++|++++|.+..++ ..+.++++|++|++++ +.++..+ +..+++| ++|++.+|.+
T Consensus 111 -~l~~lp~~--~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 -RLQNISCC--PMA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp -CCCEECSC--CCT-TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred -cCCccCcc--ccc-cCCEEECCCCCccccCchHhhcccCcccEEecCC-CccccCc---hhhhhhceeeEEEeecccc
Confidence 88888776 677 9999999999988764 6789999999999998 5665533 4445555 9999988876
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=3e-21 Score=189.23 Aligned_cols=304 Identities=17% Similarity=0.215 Sum_probs=206.2
Q ss_pred cCcEEEEeCCccccC--CCccCCccceEEEccCCccc-ccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEE
Q 045968 20 KRNFLVRAGAGLKEA--PDVKGWENVRRLSLMQNQIE-TVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLK 94 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~-~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 94 (402)
....+...+..+..+ ..+.++++|+.|++++|.+. .++. ...+++|++|++++| .+..+++..|.++++|++|+
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEE
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEe
Confidence 356677777677665 35788899999999999875 4543 478999999999998 67776555599999999999
Q ss_pred ccCCCccccc-cccc--cccccccccEEEecCCCCccc-cHh-hhcCCCCcEEEccCCCCccccchhhhhCC--------
Q 045968 95 MSNCGQGRLK-LPVG--MSVLGSSLELLDISCTGITEL-PEE-LKKLVNLKCLNLRWTGALIRIPRQLISKF-------- 161 (402)
Q Consensus 95 l~~~~~~i~~-l~~~--~~~l~~~L~~L~L~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l-------- 161 (402)
+++| .++. .+.. +..+. +|++|++++|.+..+ |.. +..+++|++|++++| .++.++...+..+
T Consensus 110 L~~n--~l~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 110 LTQC--NLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CTTS--CCBTHHHHSSTTTTCT-TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEE
T ss_pred CCCC--CCCccccCcccccCcc-cCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhcccccccccc
Confidence 9999 7875 3333 77788 999999999999876 544 789999999999994 5655443334433
Q ss_pred --------------------------CCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchh
Q 045968 162 --------------------------SRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHA 215 (402)
Q Consensus 162 --------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 215 (402)
++|++|++.+|.+... ....+......++|+.|.++.+....
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~------------~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES------------MAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH------------HHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCccccc------------chhhhhccccccceeeEeeccccccc
Confidence 4555555555544211 01111122223555566554321110
Q ss_pred h----------HhhhhhhhhcccceeeEeccc--------------eeeeEeccccccccCCCCc-cccccccEEecccc
Q 045968 216 L----------QILLSSNKLKSCIRSLCLDGF--------------ELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLC 270 (402)
Q Consensus 216 ~----------~~~~~~~~~~~~L~~L~l~~~--------------~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~ 270 (402)
. ....-.......|+.|++++| +|++|+++++......+.. ..+++|+.|++++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 0 000000001235666666555 6777777777665544421 16899999999999
Q ss_pred cCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCc-cCCCCccE
Q 045968 271 HKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKP-LPFTRLKE 347 (402)
Q Consensus 271 ~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~-~~~~~L~~ 347 (402)
.++.++ .+..+++|++|++++|.. +.+. ...+..+++|++|+++++ .++.++... ..+++|++
T Consensus 334 -~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 334 -FLGSIDSRMFENLDKLEVLDLSYNHI-RALG-----------DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp -CCCEECGGGGTTCTTCCEEECCSSCC-CEEC-----------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred -ccCCcChhHhcCcccCCEEECCCCcc-cccC-----------hhhccccccccEEECCCC-ccccCCHhHhccCCcccE
Confidence 677763 577899999999999864 3321 246788999999999985 676766543 56899999
Q ss_pred EEecCCC
Q 045968 348 MAVLGCD 354 (402)
Q Consensus 348 L~i~~c~ 354 (402)
|++++++
T Consensus 400 L~l~~N~ 406 (455)
T 3v47_A 400 IWLHTNP 406 (455)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 9998764
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=4.2e-21 Score=180.30 Aligned_cols=263 Identities=19% Similarity=0.262 Sum_probs=176.9
Q ss_pred cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEE
Q 045968 42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLD 120 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~ 120 (402)
+++.++++++.++.+|... .++++.|++++| .+..++...|..+++|++|++++| .++.+ |..+..+. +|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~-~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN--KISKISPGAFAPLV-KLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS--CCCCBCTTTTTTCT-TCCEEE
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC--cCCeeCHHHhcCCC-CCCEEE
Confidence 6788888888887776532 367888888887 777777766888888888888888 77776 67777777 888888
Q ss_pred ecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL 200 (402)
Q Consensus 121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 200 (402)
+++|.+..+|..+. ++|++|++++ +.++.++...+.++++|++|++.++.+.. .......+..+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l 170 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGM 170 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGC
T ss_pred CCCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCC
Confidence 88888888776654 7888888888 57777776668888888888888877642 11223456678
Q ss_pred CCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCc--c
Q 045968 201 KYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT--F 278 (402)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~ 278 (402)
++|+.|.++.+....++. . ..+.|+.|++++|.++.+.... .. .+++|+.|+++++ .++.++ .
T Consensus 171 ~~L~~L~l~~n~l~~l~~---~--~~~~L~~L~l~~n~l~~~~~~~--------~~-~l~~L~~L~Ls~n-~l~~~~~~~ 235 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQ---G--LPPSLTELHLDGNKITKVDAAS--------LK-GLNNLAKLGLSFN-SISAVDNGS 235 (330)
T ss_dssp TTCCEEECCSSCCCSCCS---S--CCTTCSEEECTTSCCCEECTGG--------GT-TCTTCCEEECCSS-CCCEECTTT
T ss_pred CCcCEEECCCCccccCCc---c--ccccCCEEECCCCcCCccCHHH--------hc-CCCCCCEEECCCC-cCceeChhh
Confidence 888888887665443321 1 1134555555444333321110 12 5677888888877 566553 4
Q ss_pred cccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCcc-------CCCCccEEEec
Q 045968 279 LVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPL-------PFTRLKEMAVL 351 (402)
Q Consensus 279 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~-------~~~~L~~L~i~ 351 (402)
+..+++|++|++++|.. ..++ ..+..+++|+.|+++++ .++.++.... ..+.|+.|++.
T Consensus 236 ~~~l~~L~~L~L~~N~l-~~lp------------~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~ 301 (330)
T 1xku_A 236 LANTPHLRELHLNNNKL-VKVP------------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLF 301 (330)
T ss_dssp GGGSTTCCEEECCSSCC-SSCC------------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred ccCCCCCCEEECCCCcC-ccCC------------hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEee
Confidence 66778888888888643 2332 24567788888888774 3554443221 24677778777
Q ss_pred CCC
Q 045968 352 GCD 354 (402)
Q Consensus 352 ~c~ 354 (402)
+.+
T Consensus 302 ~N~ 304 (330)
T 1xku_A 302 SNP 304 (330)
T ss_dssp SSS
T ss_pred cCc
Confidence 655
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.2e-21 Score=202.70 Aligned_cols=268 Identities=15% Similarity=0.181 Sum_probs=163.2
Q ss_pred CCCCccceEeccccccccc------------------cchHHhc--cCCCCCEEEccCCCcccc-ccccccccccccccE
Q 045968 60 PTCPHLLTLFLDFNQELEM------------------IADGFFQ--LMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLEL 118 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~------------------~~~~~~~--~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~~ 118 (402)
..+++|++|++++| .+.. +|.. +. ++++|++|++++| .+. .+|..++.+. +|++
T Consensus 445 ~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N--~l~~~iP~~l~~L~-~L~~ 519 (876)
T 4ecn_A 445 QRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNC--PNMTQLPDFLYDLP-ELQS 519 (876)
T ss_dssp GGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESC--TTCCSCCGGGGGCS-SCCE
T ss_pred hcCCCCCEEECcCC-cCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCC--CCCccChHHHhCCC-CCCE
Confidence 57788888888888 5555 6666 45 8888888888888 544 5687888888 8888
Q ss_pred EEecCCC-Ccc--ccHhhhcCC-------CCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecccccccCCCccccc
Q 045968 119 LDISCTG-ITE--LPEELKKLV-------NLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLF 187 (402)
Q Consensus 119 L~L~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 187 (402)
|++++|. +.. +|..+..++ +|++|++++ +.++.+|. ..+.++++|++|++.+|.+...
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l---------- 588 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHNKVRHL---------- 588 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCCCBCCCHHHHTTCTTCCEEECTTSCCCBC----------
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcCCccCChhhhhcCCCCCEEECCCCCcccc----------
Confidence 8888887 763 777766655 888888888 46668886 2388888888888888877421
Q ss_pred CCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhccc-ceeeEeccc---------------eeeeEecccccccc
Q 045968 188 GGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSC-IRSLCLDGF---------------ELEELKIDYTEIVR 251 (402)
Q Consensus 188 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~---------------~L~~L~i~~~~~~~ 251 (402)
..+..+++|+.|.++.+... .++......+. |+.|++++| +|+.|+++++....
T Consensus 589 -------p~~~~L~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 589 -------EAFGTNVKLTDLKLDYNQIE---EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp -------CCCCTTSEESEEECCSSCCS---CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred -------hhhcCCCcceEEECcCCccc---cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 14556667777777655443 23333333444 777777666 26777777665543
Q ss_pred CCCCc------cccccccEEecccccCcccCcc--cccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccce
Q 045968 252 KRREP------FVFRNLHRVTMVLCHKLKDVTF--LVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQR 323 (402)
Q Consensus 252 ~~~~~------~~~~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 323 (402)
.++.. ...++|+.|++++| .++.++. +..+++|+.|++++|.. ..++...+.+.. .....+++|+.
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~----~~l~nl~~L~~ 732 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKD----GNYKNTYLLTT 732 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTT----SCCTTGGGCCE
T ss_pred ccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcC-CccChHHhcccc----ccccccCCccE
Confidence 32211 02346777777776 5666542 23567777777777533 233221111000 01122335555
Q ss_pred eecCccccccccccCcc--CCCCccEEEecCCCCCCCCCC
Q 045968 324 LNLEDLPNLESIYWKPL--PFTRLKEMAVLGCDQLEKLPV 361 (402)
Q Consensus 324 L~l~~c~~l~~i~~~~~--~~~~L~~L~i~~c~~L~~lp~ 361 (402)
|++++| .+..++.... .+++|+.|+++++ +++.+|.
T Consensus 733 L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~ 770 (876)
T 4ecn_A 733 IDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPT 770 (876)
T ss_dssp EECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCC
T ss_pred EECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccch
Confidence 555554 3444444333 4555555555544 3444443
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=9.8e-21 Score=194.94 Aligned_cols=313 Identities=19% Similarity=0.172 Sum_probs=194.2
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+...+..+..+|..- .+++++|++++|.+..++. ...+++|++|++++| .+..+++..|.++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n- 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN- 83 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS-
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC-
Confidence 46667777888887532 2799999999999998775 478999999999998 777777777999999999999999
Q ss_pred cccccccc-ccccccccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968 100 QGRLKLPV-GMSVLGSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF 177 (402)
Q Consensus 100 ~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 177 (402)
.++.+|. .|+.+. +|++|++++|.+..++ ..+..+++|++|++++| .++..+...+.++++|++|++.+|.+...
T Consensus 84 -~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 84 -ELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp -CCCCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred -ccCccChhhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccccc
Confidence 8998875 588888 9999999999998886 45899999999999995 66665554588999999999999877532
Q ss_pred ccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhc---------------------------ccce
Q 045968 178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLK---------------------------SCIR 230 (402)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~---------------------------~~L~ 230 (402)
.........+++|+.|+++.+....+. +...... ..|+
T Consensus 161 -------------~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~ 225 (680)
T 1ziw_A 161 -------------KSEELDIFANSSLKKLELSSNQIKEFS--PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225 (680)
T ss_dssp -------------CHHHHGGGTTCEESEEECTTCCCCCBC--TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC
T ss_pred -------------CHHHhhccccccccEEECCCCcccccC--hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc
Confidence 111111223456666666544322211 1111111 3455
Q ss_pred eeEeccc----------------eeeeEeccccccccCCCCc-cccccccEEecccccCcccC--cccccCCCCCEEeec
Q 045968 231 SLCLDGF----------------ELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDV--TFLVFAPNLKSLDLD 291 (402)
Q Consensus 231 ~L~l~~~----------------~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l--~~~~~l~~L~~L~l~ 291 (402)
.|.++++ +|++|+++++......+.. ..+++|+.|+++++ .++.+ ..+..+++|++|+++
T Consensus 226 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECT
T ss_pred EEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC-ccCccChhhhcCCCCccEEecc
Confidence 5555444 1555555544443322211 13455555555555 33332 134455555555555
Q ss_pred CCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccc-cCccCCCCccEEEecCCC-CCCCCC
Q 045968 292 GCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIY-WKPLPFTRLKEMAVLGCD-QLEKLP 360 (402)
Q Consensus 292 ~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~-~~~~~~~~L~~L~i~~c~-~L~~lp 360 (402)
++..-..+....... -....+..+++|+.|+++++. +..+. .....+++|++|++++|. .++.++
T Consensus 305 ~~~~~~~~~~~~lp~---i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~ 371 (680)
T 1ziw_A 305 RSFTKQSISLASLPK---IDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371 (680)
T ss_dssp TCBCCC------CCE---ECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred chhhhcccccccccc---cChhhcccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCchhhhhcc
Confidence 432211110000000 001144566777777777653 33332 223456777777777664 244444
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=1.4e-20 Score=188.81 Aligned_cols=149 Identities=19% Similarity=0.196 Sum_probs=118.9
Q ss_pred cCcEEEEeCCccccC--CCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEc
Q 045968 20 KRNFLVRAGAGLKEA--PDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM 95 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 95 (402)
....+...+..+..+ ..+.++++|++|++++|.+..++. ...+++|++|++++| .+..+++..|.++++|++|++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEEC
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEEC
Confidence 346666677666665 357888999999999999988764 488999999999999 888888877999999999999
Q ss_pred cCCCcccccc--ccccccccccccEEEecCCC-CccccH-hhhcCCCCcEEEccCCCCccc-cchhhhhCCCCCcEEEee
Q 045968 96 SNCGQGRLKL--PVGMSVLGSSLELLDISCTG-ITELPE-ELKKLVNLKCLNLRWTGALIR-IPRQLISKFSRLRVLRMF 170 (402)
Q Consensus 96 ~~~~~~i~~l--~~~~~~l~~~L~~L~L~~~~-l~~lp~-~i~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L~~L~l~ 170 (402)
++| .++.+ |..++.+. +|++|++++|. +..+|. .+..+++|++|++++| .++. .|. .+..+++|++|++.
T Consensus 106 s~n--~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 106 MGN--PYQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQ-SLKSIRDIHHLTLH 180 (549)
T ss_dssp TTC--CCSSSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTT-TTTTCSEEEEEEEE
T ss_pred CCC--cccccchhhhhhccC-CccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChh-hhhccccCceEecc
Confidence 999 78754 66788888 99999999987 677764 6888999999999984 5555 444 37777777777776
Q ss_pred eecc
Q 045968 171 AIGY 174 (402)
Q Consensus 171 ~~~~ 174 (402)
.+..
T Consensus 181 ~n~~ 184 (549)
T 2z81_A 181 LSES 184 (549)
T ss_dssp CSBS
T ss_pred cCcc
Confidence 6554
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2.6e-21 Score=181.62 Aligned_cols=83 Identities=25% Similarity=0.408 Sum_probs=48.5
Q ss_pred CCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcE
Q 045968 87 MPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRV 166 (402)
Q Consensus 87 l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 166 (402)
.+.+++|++++| .+..+|..++.+. +|++|++++|.+..+|..+..+++|++|++++ +.++.+|.. +.++++|++
T Consensus 80 ~~~l~~L~L~~n--~l~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~-l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSV--PLPQFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLAR-NPLRALPAS-IASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESS--CCSSCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEES-CCCCCCCGG-GGGCTTCCE
T ss_pred ccceeEEEccCC--CchhcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCC-CccccCcHH-HhcCcCCCE
Confidence 355666666666 5555555555555 66666666666555555556666666666665 344555543 556666666
Q ss_pred EEeeeecc
Q 045968 167 LRMFAIGY 174 (402)
Q Consensus 167 L~l~~~~~ 174 (402)
|++.+|..
T Consensus 155 L~L~~n~~ 162 (328)
T 4fcg_A 155 LSIRACPE 162 (328)
T ss_dssp EEEEEETT
T ss_pred EECCCCCC
Confidence 66666544
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=1.3e-20 Score=198.49 Aligned_cols=305 Identities=18% Similarity=0.175 Sum_probs=207.3
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+.....++..+|. ..++++.|++++|.+..+.. ...+++|++|++++|..+..+++..|.++++|++|++++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N- 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS- 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-
Confidence 466677788999998 55899999999999988643 4899999999999996677786666999999999999999
Q ss_pred cccccc-ccccccccccccEEEecCCCCcc-ccHh--hhcCCCCcEEEccCCCCccccc-hhhhhCCCCCcEEEeeeecc
Q 045968 100 QGRLKL-PVGMSVLGSSLELLDISCTGITE-LPEE--LKKLVNLKCLNLRWTGALIRIP-RQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 100 ~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 174 (402)
.+..+ |..|+.+. +|++|++++|.+.. +|.. +.++++|++|++++| .++.++ ...+.++++|++|++.+|.+
T Consensus 84 -~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 84 -KIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp -CCCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred -cCcccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcC
Confidence 88877 78899999 99999999998875 4554 889999999999994 666543 23489999999999999887
Q ss_pred cccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhh--------------------------------Hhhhhh
Q 045968 175 DRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHAL--------------------------------QILLSS 222 (402)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--------------------------------~~~~~~ 222 (402)
... ....+..+.. ++|+.|.++.+..... ..+...
T Consensus 161 ~~~------------~~~~l~~l~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 161 FLV------------CEHELEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp CCC------------CSGGGHHHHH-CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred Cee------------CHHHcccccC-CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 542 1111221211 3444444443321110 000000
Q ss_pred hhhcccceeeEecc-------------------------ceeeeEeccccccccCCCCc-cccccccEEecccccCcccC
Q 045968 223 NKLKSCIRSLCLDG-------------------------FELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDV 276 (402)
Q Consensus 223 ~~~~~~L~~L~l~~-------------------------~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l 276 (402)
. ....+..+.+.. .+|+.|+++++......+.. ..+++|+.|+++++ .++.+
T Consensus 228 l-~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~ 305 (844)
T 3j0a_A 228 I-SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKI 305 (844)
T ss_dssp S-CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEE
T ss_pred c-CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCC
Confidence 0 001222222220 14666666665554333321 15778888888877 56554
Q ss_pred --cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccC-ccCCCCccEEEecCC
Q 045968 277 --TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWK-PLPFTRLKEMAVLGC 353 (402)
Q Consensus 277 --~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~~L~~L~i~~c 353 (402)
..+..+++|++|++++|.. ..+ ....+..+++|+.|+++++ .+..++.. ...+++|+.|+++++
T Consensus 306 ~~~~~~~l~~L~~L~Ls~N~l-~~~-----------~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 306 ADEAFYGLDNLQVLNLSYNLL-GEL-----------YSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CTTTTTTCSSCCEEEEESCCC-SCC-----------CSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred ChHHhcCCCCCCEEECCCCCC-Ccc-----------CHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence 2566778888888888653 222 1236678888999999886 45555443 345789999999876
Q ss_pred CCCCCCCC
Q 045968 354 DQLEKLPV 361 (402)
Q Consensus 354 ~~L~~lp~ 361 (402)
+++.++.
T Consensus 373 -~l~~i~~ 379 (844)
T 3j0a_A 373 -ALTTIHF 379 (844)
T ss_dssp -CSCCCSS
T ss_pred -CCCcccC
Confidence 4565543
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=8.3e-21 Score=191.27 Aligned_cols=335 Identities=19% Similarity=0.175 Sum_probs=227.8
Q ss_pred CcEEEEeCCccccCC--CccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEcc
Q 045968 21 RNFLVRAGAGLKEAP--DVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMS 96 (402)
Q Consensus 21 ~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~ 96 (402)
...+......+..++ .+.++++|+.|++++|.+..++. ...+++|++|++++| .+..+++..|.++++|++|+++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccccc
Confidence 456666666666654 57888999999999999888764 378999999999988 7777776668999999999999
Q ss_pred CCCcccccccc-ccccccccccEEEecCCCCcc--ccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCC---------
Q 045968 97 NCGQGRLKLPV-GMSVLGSSLELLDISCTGITE--LPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRL--------- 164 (402)
Q Consensus 97 ~~~~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--------- 164 (402)
+| .++.++. .++.+. +|++|++++|.+.. +|..+.++++|++|++++| .++.++...+..+++|
T Consensus 109 ~n--~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 109 ET--NLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp TS--CCCCSTTCSCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred cc--ccccCCCccccccc-cccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhccc
Confidence 99 8887754 577888 99999999998875 6788888999999998884 5554433223333333
Q ss_pred --------------------------------------------------------------------------------
Q 045968 165 -------------------------------------------------------------------------------- 164 (402)
Q Consensus 165 -------------------------------------------------------------------------------- 164 (402)
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence
Q ss_pred --------------------cEEEeeeecccccccCCCcc-----cc---------------------cCCcchhhHhhh
Q 045968 165 --------------------RVLRMFAIGYDRFHEAPEDS-----VL---------------------FGGGEVLIQELL 198 (402)
Q Consensus 165 --------------------~~L~l~~~~~~~~~~~~~~~-----~~---------------------~~~~~~~~~~l~ 198 (402)
++|++.++.+...+..+.+. .+ ..+.........
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccc
Confidence 33333332222111000000 00 000000000015
Q ss_pred cCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-------------eeeeEeccccccccCCCC--cccccccc
Q 045968 199 GLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-------------ELEELKIDYTEIVRKRRE--PFVFRNLH 263 (402)
Q Consensus 199 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------~L~~L~i~~~~~~~~~~~--~~~~~~L~ 263 (402)
.+++|+.|+++.+........+.....+++|+.|++++| +|++|+++++......+. -..+++|+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 789999999987665443222333445668999998887 678888888776555442 12689999
Q ss_pred EEecccccCcccC--cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccccc-ccCcc
Q 045968 264 RVTMVLCHKLKDV--TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESI-YWKPL 340 (402)
Q Consensus 264 ~L~l~~~~~l~~l--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i-~~~~~ 340 (402)
.|++++| .++.. ..+..+++|++|++++|..... ..+..+..+++|+.|++++|. +..+ +....
T Consensus 425 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 491 (570)
T 2z63_A 425 YLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQEN-----------FLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN 491 (570)
T ss_dssp EEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGG-----------EECSCCTTCTTCCEEECTTSC-CCEECTTTTT
T ss_pred EEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccc-----------cchhhhhcccCCCEEECCCCc-cccCChhhhh
Confidence 9999999 55543 3577899999999999875422 122467889999999999974 5444 55556
Q ss_pred CCCCccEEEecCCCCCCCCCCCCCCCCCCeeEEE
Q 045968 341 PFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIR 374 (402)
Q Consensus 341 ~~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~~~ 374 (402)
.+++|++|++++| +++.+|........+++.+.
T Consensus 492 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 492 SLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred cccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEE
Confidence 7899999999987 68888755433335666554
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=186.10 Aligned_cols=174 Identities=22% Similarity=0.251 Sum_probs=113.2
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
.........+..+|..- .++++.|++++|.+..++. ...+++|++|++++| .+..+++..|.++++|++|++++|
T Consensus 34 ~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n- 110 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN- 110 (353)
T ss_dssp SEEECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred eEeeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-
Confidence 34444555666665422 2467777777777776654 366777777777776 666665555777777777777777
Q ss_pred ccccccccc-cccccccccEEEecCCCCccccH--hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccc
Q 045968 100 QGRLKLPVG-MSVLGSSLELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR 176 (402)
Q Consensus 100 ~~i~~l~~~-~~~l~~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 176 (402)
.++.++.. +..+. +|++|++++|.+..+|. .+..+++|++|++++|+.++.++...+.++++|++|++.+|.+..
T Consensus 111 -~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 111 -YLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp -CCSSCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred -cCCcCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 67766544 56666 77777777777777665 466777777777777555666655446777777777777776532
Q ss_pred cccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchh
Q 045968 177 FHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHA 215 (402)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 215 (402)
.....+..+++|+.|+++.+....
T Consensus 189 ---------------~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 189 ---------------YEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp ---------------ECTTTTTTCSEEEEEEEECSCSTT
T ss_pred ---------------cCHHHHhccccCCeecCCCCcccc
Confidence 123345566677777777655433
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=2e-20 Score=186.57 Aligned_cols=120 Identities=20% Similarity=0.150 Sum_probs=95.7
Q ss_pred cCcEEEEeCCccccCC--CccCCccceEEEccCCcccccC--CCCCCCccceEeccccccccccchHHhccCCCCCEEEc
Q 045968 20 KRNFLVRAGAGLKEAP--DVKGWENVRRLSLMQNQIETVS--EVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM 95 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 95 (402)
....+......+..++ .+.++++|+.|++++|.+..++ ....+++|++|++++| .+..+|.. .+++|++|++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~L 97 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH---PTVNLKHLDL 97 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC---CCCCCSEEEC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc---ccCCccEEec
Confidence 3466677777776664 4778889999999999988873 3478999999999998 77788774 7899999999
Q ss_pred cCCCccccc--cccccccccccccEEEecCCCCccccHhhhcCCCC--cEEEccCCC
Q 045968 96 SNCGQGRLK--LPVGMSVLGSSLELLDISCTGITELPEELKKLVNL--KCLNLRWTG 148 (402)
Q Consensus 96 ~~~~~~i~~--l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~~ 148 (402)
++| .++. +|..++.+. +|++|++++|.+.. ..+..+++| +.|++.+|.
T Consensus 98 ~~N--~l~~~~~p~~~~~l~-~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 98 SFN--AFDALPICKEFGNMS-QLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CSS--CCSSCCCCGGGGGCT-TCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred cCC--ccccccchhhhccCC-cceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence 999 7875 467888888 99999999998875 346667777 888888753
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=7.7e-21 Score=178.40 Aligned_cols=221 Identities=21% Similarity=0.267 Sum_probs=156.4
Q ss_pred CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCc
Q 045968 61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLK 140 (402)
Q Consensus 61 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~ 140 (402)
..++++.|++++| .+..+|.. +..+++|++|++++| .++.+|..++.+. +|++|++++|.+..+|..+..+++|+
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~n--~l~~lp~~~~~l~-~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAA--GLMELPDTMQQFA-GLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSC-GGGGTTCSEEEEESS--CCCCCCSCGGGGT-TCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred cccceeEEEccCC-CchhcChh-hhhCCCCCEEECCCC--CccchhHHHhccC-CCCEEECCCCccccCcHHHhcCcCCC
Confidence 4588999999998 78888887 777999999999999 8888899999998 99999999999999999999999999
Q ss_pred EEEccCCCCccccchhhhh---------CCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEec
Q 045968 141 CLNLRWTGALIRIPRQLIS---------KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLG 211 (402)
Q Consensus 141 ~L~l~~~~~~~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 211 (402)
+|++++|+....+|.. +. ++++|++|++.+|.+.. ....+..+++|+.|+++++
T Consensus 154 ~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------------lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 154 ELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRS----------------LPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp EEEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCC----------------CCGGGGGCTTCCEEEEESS
T ss_pred EEECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCc----------------chHhhcCCCCCCEEEccCC
Confidence 9999998888888864 43 36677777777666532 1123455556666665543
Q ss_pred CchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCc-ccccCCCCCEEee
Q 045968 212 SYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDL 290 (402)
Q Consensus 212 ~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l 290 (402)
. +.. .++....+++|+.|++++|.....++ .+..+++|++|++
T Consensus 217 ~--------------------------l~~----------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 217 P--------------------------LSA----------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp C--------------------------CCC----------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred C--------------------------CCc----------CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 2 111 01111156677777777764444443 4566677777777
Q ss_pred cCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEec
Q 045968 291 DGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVL 351 (402)
Q Consensus 291 ~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~ 351 (402)
++|.....++ ..+..+++|+.|++++|+.+..++.....+++|+.+++.
T Consensus 261 ~~n~~~~~~p------------~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 261 KDCSNLLTLP------------LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCTTCCBCC------------TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCCchhhcc------------hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 7766554433 245566677777777776666666666666666666664
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=2.8e-21 Score=201.54 Aligned_cols=321 Identities=19% Similarity=0.154 Sum_probs=197.5
Q ss_pred CcEEEEeCCcccc-CCCccCCccceEEEccCCcccc-cC-CCCCCCccceEeccccccccccchHHhccCCCCCEEEccC
Q 045968 21 RNFLVRAGAGLKE-APDVKGWENVRRLSLMQNQIET-VS-EVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN 97 (402)
Q Consensus 21 ~~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~ 97 (402)
...+......+.. +|.+..+++|+.|++++|.+.. ++ ....+++|++|++++|.-...++. . .+++|++|++++
T Consensus 202 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~-~l~~L~~L~L~~ 278 (768)
T 3rgz_A 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L-PLKSLQYLSLAE 278 (768)
T ss_dssp CCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--C-CCTTCCEEECCS
T ss_pred CCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--c-ccCCCCEEECcC
Confidence 4555555555543 4667888899999999998774 23 347888899999988833333433 2 778888888888
Q ss_pred CCcccc-ccccccccc-cccccEEEecCCCCc-cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 98 CGQGRL-KLPVGMSVL-GSSLELLDISCTGIT-ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 98 ~~~~i~-~l~~~~~~l-~~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
| .+. .+|..+... . +|++|++++|.+. .+|..+..+++|++|++++|.....+|...+.++++|++|++.+|.+
T Consensus 279 n--~l~~~ip~~~~~~~~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 279 N--KFTGEIPDFLSGACD-TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp S--EEEESCCCCSCTTCT-TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred C--ccCCccCHHHHhhcC-cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 8 776 567766654 5 8888888888776 56777888888888888885333367765578888888888888766
Q ss_pred ccc-ccCC-------CcccccCC--cchhhHhhhc--CCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-----
Q 045968 175 DRF-HEAP-------EDSVLFGG--GEVLIQELLG--LKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF----- 237 (402)
Q Consensus 175 ~~~-~~~~-------~~~~~~~~--~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----- 237 (402)
... +..+ ...+++.+ .......+.. +++|+.|.++.+.... .++.....++.|+.|++++|
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG--KIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE--ECCGGGGGCTTCCEEECCSSEEESC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc--ccCHHHhcCCCCCEEECcCCcccCc
Confidence 421 0000 00001000 0001111212 4455555555433221 12223334456666666665
Q ss_pred ---------eeeeEeccccccccCCCCc-cccccccEEecccccCcc-cCc-ccccCCCCCEEeecCCcchHHHhhcCCC
Q 045968 238 ---------ELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLK-DVT-FLVFAPNLKSLDLDGCDAMEEIISVGKF 305 (402)
Q Consensus 238 ---------~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 305 (402)
+|++|+++++......+.. ..+++|+.|++++| .++ .++ .+..+++|++|++++|.....++
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p----- 507 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIP----- 507 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-----
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCccCCcCC-----
Confidence 5666666666554444331 14667777777776 444 333 56667777777777765432222
Q ss_pred CCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCCCC
Q 045968 306 AETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVD 362 (402)
Q Consensus 306 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~~ 362 (402)
..++.+++|+.|++++|.-...++.....+++|+.|++++|+--..+|..
T Consensus 508 -------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 508 -------KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp -------GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred -------hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 35567788888888887655566666667788888888777543355543
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=4.6e-20 Score=189.89 Aligned_cols=152 Identities=20% Similarity=0.225 Sum_probs=124.9
Q ss_pred cCcEEEEeCCccccCCC--ccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEc
Q 045968 20 KRNFLVRAGAGLKEAPD--VKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM 95 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 95 (402)
....+...+..+..++. +.++++|+.|++++|.+..++.. ..+++|++|++++| .+..++...|..+++|++|++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEEC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEEC
Confidence 45667777777777753 78889999999999998887543 68999999999998 888888877999999999999
Q ss_pred cCCCccccccc-cccccccccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCccccchhhhh--CCCCCcEEEeee
Q 045968 96 SNCGQGRLKLP-VGMSVLGSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALIRIPRQLIS--KFSRLRVLRMFA 171 (402)
Q Consensus 96 ~~~~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~ 171 (402)
++| .+..++ ..++.+. +|++|++++|.+...+ ..+.++++|++|++++ +.++.++...+. .+++|++|++.+
T Consensus 105 ~~n--~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 105 MSN--SIQKIKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp CSS--CCCCCCSCTTTTCT-TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred CCC--ccCccChhHccccC-CCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhhccccccccEEECCC
Confidence 999 888875 6788888 9999999999887654 4578899999999999 567776654343 568999999998
Q ss_pred ecccc
Q 045968 172 IGYDR 176 (402)
Q Consensus 172 ~~~~~ 176 (402)
|.+..
T Consensus 181 n~l~~ 185 (680)
T 1ziw_A 181 NQIKE 185 (680)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 87654
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=3.1e-19 Score=179.67 Aligned_cols=119 Identities=24% Similarity=0.245 Sum_probs=97.9
Q ss_pred cCcEEEEeCCccccCC--CccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEc
Q 045968 20 KRNFLVRAGAGLKEAP--DVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM 95 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 95 (402)
....+......+..++ .+.++++|+.|++++|.+..++. ...+++|++|++++| .+..+|.. .+++|++|++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~L 128 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC---PMASLRHLDL 128 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC---CCTTCSEEEC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc---ccccCCEEEC
Confidence 4567777777777775 58888999999999999998743 378999999999999 78888875 8999999999
Q ss_pred cCCCcccccc--ccccccccccccEEEecCCCCccccHhhhcCCCC--cEEEccCC
Q 045968 96 SNCGQGRLKL--PVGMSVLGSSLELLDISCTGITELPEELKKLVNL--KCLNLRWT 147 (402)
Q Consensus 96 ~~~~~~i~~l--~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~ 147 (402)
++| .++.+ |..++.+. +|++|++++|.+... .+..+++| +.|++++|
T Consensus 129 s~N--~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 129 SFN--DFDVLPVCKEFGNLT-KLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CSS--CCSBCCCCGGGGGCT-TCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEES
T ss_pred CCC--CccccCchHhhcccC-cccEEecCCCccccC--chhhhhhceeeEEEeecc
Confidence 999 88876 46888898 999999999988753 34555566 99998885
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=3.6e-19 Score=181.23 Aligned_cols=147 Identities=22% Similarity=0.230 Sum_probs=123.8
Q ss_pred EEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968 23 FLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100 (402)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (402)
.+...+.++..+|.-- ..++++|++++|.++.++. +..+++|++|++++| .+..+++.+|.++++|++|++++|
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-- 110 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-- 110 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC--
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC--
Confidence 3445567888887422 2589999999999999875 488999999999999 889998888999999999999999
Q ss_pred cccccc-cccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCcccc--chhhhhCCCCCcEEEeeeecccc
Q 045968 101 GRLKLP-VGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRI--PRQLISKFSRLRVLRMFAIGYDR 176 (402)
Q Consensus 101 ~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 176 (402)
.++.+| ..|..+. +|++|++++|.+..+|.. ++++++|++|++++ +.++.+ |. .+..+++|++|++.+|.+..
T Consensus 111 ~l~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 111 PIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCEECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCG-GGGGCTTCCEEECCSSCCCE
T ss_pred cCCCCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeecccc-CccccCCCch-hhccchhhhhhcccCccccc
Confidence 899886 4578888 999999999999988765 88999999999999 566653 44 37889999999999887643
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=2.3e-20 Score=173.98 Aligned_cols=128 Identities=20% Similarity=0.275 Sum_probs=84.3
Q ss_pred ccceEEEccCCcccc---cCC-CCCCCccceEeccc-ccccc-ccchHHhccCCCCCEEEccCCCcccc-cccccccccc
Q 045968 41 ENVRRLSLMQNQIET---VSE-VPTCPHLLTLFLDF-NQELE-MIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVLG 113 (402)
Q Consensus 41 ~~l~~L~l~~~~~~~---~~~-~~~~~~L~~L~l~~-~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~~l~ 113 (402)
.+++.|+++++.+.. ++. ...+++|++|++++ | .+. .+|.. +..+++|++|++++| .++ .+|..+..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-~l~~~~p~~-l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPIPPA-IAKLTQLHYLYITHT--NVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET-TEESCCCGG-GGGCTTCSEEEEEEE--CCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC-cccccCChh-HhcCCCCCEEECcCC--eeCCcCCHHHhCCC
Confidence 467777777776653 443 26677777777774 4 443 34444 677777777777777 666 4566677666
Q ss_pred ccccEEEecCCCCc-cccHhhhcCCCCcEEEccCCCCcc-ccchhhhhCCC-CCcEEEeeeeccc
Q 045968 114 SSLELLDISCTGIT-ELPEELKKLVNLKCLNLRWTGALI-RIPRQLISKFS-RLRVLRMFAIGYD 175 (402)
Q Consensus 114 ~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~-~L~~L~l~~~~~~ 175 (402)
+|++|++++|.+. .+|..+..+++|++|++++| .++ .+|.. +..++ +|++|++.+|.+.
T Consensus 126 -~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 126 -TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp -TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEE
T ss_pred -CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeee
Confidence 7777777777666 56666777777777777773 444 55554 66666 7777777776653
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=8.8e-20 Score=172.94 Aligned_cols=273 Identities=18% Similarity=0.187 Sum_probs=195.6
Q ss_pred CccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccE
Q 045968 40 WENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLEL 118 (402)
Q Consensus 40 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~ 118 (402)
++.....+.+++.++.+|.. -.++|++|++++| .+..++...+.++++|++|++++| .++.+ +..+..+. +|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~-~L~~ 104 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSG-LTEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN--GINTIEEDSFSSLG-SLEH 104 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTT-CCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCT-TCCE
T ss_pred CCCCeEeeCCCCCccccccc-ccccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC--ccCccCHhhcCCCC-CCCE
Confidence 34445578888888888764 3369999999998 788888866999999999999999 88887 56688888 9999
Q ss_pred EEecCCCCccccHh-hhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHh
Q 045968 119 LDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQE 196 (402)
Q Consensus 119 L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (402)
|++++|.+..+|.. +..+++|++|++++ +.++.+|. ..+.++++|++|++.+|... .......
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~--------------~~~~~~~ 169 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTF--------------TKIQRKD 169 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSC--------------CEECTTT
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccc--------------cccCHHH
Confidence 99999999999877 88999999999999 57888876 45889999999999998532 1222345
Q ss_pred hhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc-cccccccEEecccccCccc
Q 045968 197 LLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKD 275 (402)
Q Consensus 197 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~ 275 (402)
+..+++|+.|+++.+...... +......+ +|++|+++++.....+... ..+++|+.|+++++ .++.
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~----------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~ 236 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYE--PKSLKSIQ----------NVSHLILHMKQHILLLEIFVDVTSSVECLELRDT-DLDT 236 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEEC--TTTTTTCS----------EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC-BCTT
T ss_pred ccCCCCCCEEECCCCCcCccC--HHHHhccc----------cCCeecCCCCccccchhhhhhhcccccEEECCCC-cccc
Confidence 678899999999977544321 22222233 4555555555432211111 14788999999988 5665
Q ss_pred Cc-----ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCc-cCCCCccEEE
Q 045968 276 VT-----FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKP-LPFTRLKEMA 349 (402)
Q Consensus 276 l~-----~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~-~~~~~L~~L~ 349 (402)
++ .....+.++.++++++..-..-.. .....+..+++|+.|+++++ .++.++... ..+++|++|+
T Consensus 237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~--------~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFTFRNVKITDESLF--------QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp CCCC------CCCCCCEEEEESCBCCHHHHH--------HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred ccccccccccccchhhccccccccccCcchh--------hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEE
Confidence 42 223456788888887654322110 11124567889999999986 566777654 5688899998
Q ss_pred ecCCC
Q 045968 350 VLGCD 354 (402)
Q Consensus 350 i~~c~ 354 (402)
+++++
T Consensus 308 L~~N~ 312 (353)
T 2z80_A 308 LHTNP 312 (353)
T ss_dssp CCSSC
T ss_pred eeCCC
Confidence 88774
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.5e-19 Score=176.47 Aligned_cols=238 Identities=21% Similarity=0.239 Sum_probs=170.1
Q ss_pred EEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968 23 FLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100 (402)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (402)
.+...+.++..+|.-- ..+++.|++++|.+..++. ...+++|++|++++| .+..++...|.++++|++|++++|
T Consensus 47 ~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-- 122 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-- 122 (440)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS--
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC--
Confidence 4555666777777532 2688889999998887753 378889999999988 777777777888999999999998
Q ss_pred ccccccc-ccccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccc
Q 045968 101 GRLKLPV-GMSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFH 178 (402)
Q Consensus 101 ~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 178 (402)
.++.++. .+..+. +|++|++++|.+..++. .+..+++|++|++.+|+.+..++...+.++++|++|++.+|.+..
T Consensus 123 ~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-- 199 (440)
T 3zyj_A 123 RLTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-- 199 (440)
T ss_dssp CCSSCCTTTSCSCS-SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--
T ss_pred cCCeeCHhHhhccc-cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--
Confidence 7887754 577777 89999999998887766 477888999999988888888887668889999999998887753
Q ss_pred cCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccc
Q 045968 179 EAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFV 258 (402)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~ 258 (402)
+..+..+++|+.|+++++....+. +......++|+.|.+++|.++.+.... .. .
T Consensus 200 ---------------~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~-~ 253 (440)
T 3zyj_A 200 ---------------IPNLTPLIKLDELDLSGNHLSAIR--PGSFQGLMHLQKLWMIQSQIQVIERNA--------FD-N 253 (440)
T ss_dssp ---------------CCCCTTCSSCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTS--------ST-T
T ss_pred ---------------ccccCCCcccCEEECCCCccCccC--hhhhccCccCCEEECCCCceeEEChhh--------hc-C
Confidence 124667788888888765443321 122233445555555554444332111 12 5
Q ss_pred cccccEEecccccCcccCc--ccccCCCCCEEeecCCc
Q 045968 259 FRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCD 294 (402)
Q Consensus 259 ~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~ 294 (402)
+++|+.|+++++ .++.++ .+..+++|+.|++++|+
T Consensus 254 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 254 LQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 677888888887 666664 35667888888887765
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.6e-19 Score=176.85 Aligned_cols=239 Identities=21% Similarity=0.219 Sum_probs=170.2
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+...+.++..+|.-- .++++.|++++|.+..++. ...+++|++|++++| .+..+++..|.++++|++|++++|
T Consensus 57 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n- 133 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN- 133 (452)
T ss_dssp CEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred cEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-
Confidence 34555666777776422 2688899999998887643 378899999999988 777777666888999999999998
Q ss_pred cccccccc-ccccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968 100 QGRLKLPV-GMSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF 177 (402)
Q Consensus 100 ~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 177 (402)
.++.++. .+..+. +|++|++++|.+..+|. .+..+++|+.|++++|+.++.++...+.++++|++|++.+|.+..
T Consensus 134 -~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 134 -WLTVIPSGAFEYLS-KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp -CCSBCCTTTSSSCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred -cCCccChhhhcccC-CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 7887754 467777 89999999998888776 477888999999988888888887668888999999998887752
Q ss_pred ccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCcc
Q 045968 178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPF 257 (402)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~ 257 (402)
+..+..+++|+.|+++++....+. +......++|+.|.+++|.+..+.... ..
T Consensus 211 ----------------~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~- 263 (452)
T 3zyi_A 211 ----------------MPNLTPLVGLEELEMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQVSLIERNA--------FD- 263 (452)
T ss_dssp ----------------CCCCTTCTTCCEEECTTSCCSEEC--GGGGTTCTTCCEEECTTSCCCEECTTT--------TT-
T ss_pred ----------------cccccccccccEEECcCCcCcccC--cccccCccCCCEEEeCCCcCceECHHH--------hc-
Confidence 124667788888888766544331 122233345555555544443332111 12
Q ss_pred ccccccEEecccccCcccCc--ccccCCCCCEEeecCCc
Q 045968 258 VFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCD 294 (402)
Q Consensus 258 ~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~ 294 (402)
.+++|+.|+++++ .++.++ .+..+++|+.|++++|+
T Consensus 264 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 5778888888887 676664 35667888888888765
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=1.8e-18 Score=169.33 Aligned_cols=282 Identities=20% Similarity=0.201 Sum_probs=158.7
Q ss_pred CcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968 21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100 (402)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (402)
...+...+..+..+|.+ .++++.|++++|.++.+|.. .++|++|++++| .+..++.. .++|++|++++|
T Consensus 73 l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n-~l~~l~~~----~~~L~~L~L~~n-- 141 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNN-- 141 (454)
T ss_dssp CSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSS--
T ss_pred CCEEEecCCccccCCCC--cCCCCEEEccCCcCCccccc--cCCCcEEECCCC-ccCcccCC----CCCCCEEECcCC--
Confidence 45677777777777664 36888888888888776643 467777777776 55554431 157777777777
Q ss_pred cccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccC
Q 045968 101 GRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180 (402)
Q Consensus 101 ~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 180 (402)
.++.+| .++.+. +|++|++++|.+..+|..+ .+|++|++++ +.++.+|. +.++++|++|++.+|.+...+..
T Consensus 142 ~l~~lp-~~~~l~-~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~-n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 142 QLEKLP-ELQNSS-FLKIIDVDNNSLKKLPDLP---PSLEFIAAGN-NQLEELPE--LQNLPFLTAIYADNNSLKKLPDL 213 (454)
T ss_dssp CCSSCC-CCTTCT-TCCEEECCSSCCSCCCCCC---TTCCEEECCS-SCCSSCCC--CTTCTTCCEEECCSSCCSSCCCC
T ss_pred CCCCCc-ccCCCC-CCCEEECCCCcCcccCCCc---ccccEEECcC-CcCCcCcc--ccCCCCCCEEECCCCcCCcCCCC
Confidence 677666 466676 7777777777777666433 4777777777 46666663 67777777777777766532111
Q ss_pred C---CcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc----------eeeeEecccc
Q 045968 181 P---EDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF----------ELEELKIDYT 247 (402)
Q Consensus 181 ~---~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----------~L~~L~i~~~ 247 (402)
. ....++.+....+..+..+++|+.|+++.+....++. ....|+.|++++| +|++|+++++
T Consensus 214 ~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 214 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcccccCcccCcCCEEECcCC
Confidence 1 1112222221223346667778888877654443221 2246666666665 3555555555
Q ss_pred ccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecC
Q 045968 248 EIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLE 327 (402)
Q Consensus 248 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 327 (402)
....... ..++|+.|+++++ .++.++.+ .++|++|++++|.. +.++ ..+++|+.|+++
T Consensus 288 ~l~~l~~---~~~~L~~L~l~~N-~l~~i~~~--~~~L~~L~Ls~N~l-~~lp---------------~~~~~L~~L~L~ 345 (454)
T 1jl5_A 288 IFSGLSE---LPPNLYYLNASSN-EIRSLCDL--PPSLEELNVSNNKL-IELP---------------ALPPRLERLIAS 345 (454)
T ss_dssp CCSEESC---CCTTCCEEECCSS-CCSEECCC--CTTCCEEECCSSCC-SCCC---------------CCCTTCCEEECC
T ss_pred ccCcccC---cCCcCCEEECcCC-cCCcccCC--cCcCCEEECCCCcc-cccc---------------ccCCcCCEEECC
Confidence 4432111 1245555555554 33332211 13556666655432 1111 124555666655
Q ss_pred ccccccccccCccCCCCccEEEecCC
Q 045968 328 DLPNLESIYWKPLPFTRLKEMAVLGC 353 (402)
Q Consensus 328 ~c~~l~~i~~~~~~~~~L~~L~i~~c 353 (402)
++ .+..++. .+++|++|+++++
T Consensus 346 ~N-~l~~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 346 FN-HLAEVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp SS-CCSCCCC---CCTTCCEEECCSS
T ss_pred CC-ccccccc---hhhhccEEECCCC
Confidence 53 3444433 2455555555544
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.3e-18 Score=163.25 Aligned_cols=288 Identities=17% Similarity=0.120 Sum_probs=202.6
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+...+..+..+|... .++++.|++++|.+..++. ...+++|++|++++| .+..+.+..|..+++|++|++++|
T Consensus 34 ~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n- 110 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN- 110 (330)
T ss_dssp TEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-
T ss_pred eEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCC-
Confidence 45566666777776532 3689999999999998875 488999999999998 787875555999999999999999
Q ss_pred ccccccccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccc--cchhhhhCCCCCcEEEeeeecccc
Q 045968 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIR--IPRQLISKFSRLRVLRMFAIGYDR 176 (402)
Q Consensus 100 ~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 176 (402)
.++.+|..+. . +|++|++++|.+..++.. +..+++|+.|++++| .++. +....+.++++|++|++.++.+..
T Consensus 111 -~l~~l~~~~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 111 -QLKELPEKMP--K-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp -CCSBCCSSCC--T-TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred -cCCccChhhc--c-cccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 8998887665 4 999999999999988764 889999999999995 5543 333448899999999999998764
Q ss_pred cccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc
Q 045968 177 FHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP 256 (402)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~ 256 (402)
.+. . ..++|+.|+++++....+. +......++|+.|++++|.++.+... ...
T Consensus 186 l~~----------------~--~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~ 237 (330)
T 1xku_A 186 IPQ----------------G--LPPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNG--------SLA 237 (330)
T ss_dssp CCS----------------S--CCTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTT--------TGG
T ss_pred CCc----------------c--ccccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChh--------hcc
Confidence 210 1 1268899999866544331 12223344555555555544433211 012
Q ss_pred cccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccc-c
Q 045968 257 FVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE-S 334 (402)
Q Consensus 257 ~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~ 334 (402)
.+++|+.|++++| .++.++ .+..+++|++|++++|. ++.++...+.+. ......+.|+.|++.+++--. .
T Consensus 238 -~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~-----~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 238 -NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP-----GYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp -GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS-----SCCTTSCCCSEEECCSSSSCGGG
T ss_pred -CCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCc-----ccccccccccceEeecCcccccc
Confidence 6889999999999 788875 67889999999999975 444443222211 122346889999999876321 1
Q ss_pred cc-cCccCCCCccEEEecCC
Q 045968 335 IY-WKPLPFTRLKEMAVLGC 353 (402)
Q Consensus 335 i~-~~~~~~~~L~~L~i~~c 353 (402)
+. .....+++|+.+++++.
T Consensus 310 i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGGTTCCCGGGEEC---
T ss_pred cCccccccccceeEEEeccc
Confidence 21 22334678888888664
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-19 Score=168.69 Aligned_cols=144 Identities=24% Similarity=0.257 Sum_probs=77.4
Q ss_pred EEEeCCccccCCCccCCccceEEEccCCcccccCCC--CCCCccceEecccccccccc---chHHhccCCCCCEEEccCC
Q 045968 24 LVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMI---ADGFFQLMPSLKVLKMSNC 98 (402)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~---~~~~~~~l~~L~~L~l~~~ 98 (402)
+...+.++..+|.- -.+++++|++++|.+..++.. ..+++|++|++++| .+..+ +.. +..+++|++|++++|
T Consensus 12 l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 12 IRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFN 88 (306)
T ss_dssp EECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSC
T ss_pred EEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCC
Confidence 34444455555431 124566666666666655542 45666666666655 44332 222 445566666666666
Q ss_pred CccccccccccccccccccEEEecCCCCccccH--hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 99 GQGRLKLPVGMSVLGSSLELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 99 ~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
.+..+|..+..+. +|++|++++|.+..++. .+..+++|++|++++| .++..+...+.++++|++|++.+|.+
T Consensus 89 --~i~~l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 89 --GVITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp --SEEEEEEEEETCT-TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred --ccccChhhcCCCC-CCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCcc
Confidence 5555555555555 66666666665555543 3555666666666653 44443333355566666666655544
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.4e-18 Score=175.76 Aligned_cols=254 Identities=20% Similarity=0.176 Sum_probs=170.6
Q ss_pred CcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968 21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100 (402)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (402)
...+.+.+..+..+|.... ++|+.|++++|.++.+|. .+++|++|++++| .+..+|. .+++|++|++++|
T Consensus 42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N-- 111 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSN-- 111 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEECSC--
T ss_pred CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEECcCC--
Confidence 4567777777777765333 678888888888887776 6788888888877 6666665 5678888888888
Q ss_pred cccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccC
Q 045968 101 GRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180 (402)
Q Consensus 101 ~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 180 (402)
.++.+|. .+. +|++|++++|.+..+|.. +++|++|++++ +.++.+|. .+++|+.|++.+|.+...
T Consensus 112 ~l~~l~~---~l~-~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~-N~l~~l~~----~~~~L~~L~L~~N~l~~l--- 176 (622)
T 3g06_A 112 PLTHLPA---LPS-GLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPA----LPSELCKLWAYNNQLTSL--- 176 (622)
T ss_dssp CCCCCCC---CCT-TCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSCC---
T ss_pred cCCCCCC---CCC-CcCEEECCCCCCCcCCCC---CCCCCEEECcC-CcCCCcCC----ccCCCCEEECCCCCCCCC---
Confidence 7777765 234 788888888888877764 47888888888 46666664 256788888887776521
Q ss_pred CCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccc
Q 045968 181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFR 260 (402)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~ 260 (402)
. ..+++|+.|+++.+....++. ...+ |+.|.+.++.....+. .++
T Consensus 177 --------------~--~~~~~L~~L~Ls~N~l~~l~~------~~~~----------L~~L~L~~N~l~~l~~---~~~ 221 (622)
T 3g06_A 177 --------------P--MLPSGLQELSVSDNQLASLPT------LPSE----------LYKLWAYNNRLTSLPA---LPS 221 (622)
T ss_dssp --------------C--CCCTTCCEEECCSSCCSCCCC------CCTT----------CCEEECCSSCCSSCCC---CCT
T ss_pred --------------c--ccCCCCcEEECCCCCCCCCCC------ccch----------hhEEECcCCcccccCC---CCC
Confidence 1 345778888887665443322 1233 4444444444432221 357
Q ss_pred cccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCcc
Q 045968 261 NLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPL 340 (402)
Q Consensus 261 ~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~ 340 (402)
+|+.|++++| .++.++ ..+++|+.|++++|. ++.++ ..+++|+.|++++| .+..++....
T Consensus 222 ~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp---------------~~~~~L~~L~Ls~N-~L~~lp~~l~ 281 (622)
T 3g06_A 222 GLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLP---------------MLPSGLLSLSVYRN-QLTRLPESLI 281 (622)
T ss_dssp TCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCC---------------CCCTTCCEEECCSS-CCCSCCGGGG
T ss_pred CCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCC---------------cccccCcEEeCCCC-CCCcCCHHHh
Confidence 7888888877 676666 456778888888863 33321 15677888888775 5666666666
Q ss_pred CCCCccEEEecCCC
Q 045968 341 PFTRLKEMAVLGCD 354 (402)
Q Consensus 341 ~~~~L~~L~i~~c~ 354 (402)
.+++|+.|++++++
T Consensus 282 ~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 282 HLSSETTVNLEGNP 295 (622)
T ss_dssp GSCTTCEEECCSCC
T ss_pred hccccCEEEecCCC
Confidence 67888888887765
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=1.3e-20 Score=176.09 Aligned_cols=121 Identities=21% Similarity=0.161 Sum_probs=58.1
Q ss_pred ccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccE
Q 045968 41 ENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLEL 118 (402)
Q Consensus 41 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~ 118 (402)
++|+.|++++|.+..++. ...+++|++|++++| .+..+++ +..+++|++|++++| .++.++. .. +|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~Ls~n--~l~~l~~----~~-~L~~ 103 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNN--YVQELLV----GP-SIET 103 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTCTTCCEEECCSS--EEEEEEE----CT-TCCE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhcCCCCEEECcCC--ccccccC----CC-CcCE
Confidence 345555555555554432 245555555555555 3333333 455555555555555 4444331 12 5555
Q ss_pred EEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 119 LDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 119 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
|++++|.+..++.. .+++|++|++++ +.++.++...+..+++|++|++.+|.+
T Consensus 104 L~l~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 104 LHAANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp EECCSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred EECCCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCC
Confidence 55555555444322 244555555555 344444332344555555555555544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=3.4e-19 Score=165.38 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=121.1
Q ss_pred eEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc---ccccccccccccEEE
Q 045968 44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL---PVGMSVLGSSLELLD 120 (402)
Q Consensus 44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l---~~~~~~l~~~L~~L~ 120 (402)
+.++..++.++.+|.. ..++|++|++++| .+..++..+|.++++|++|++++| .++.+ +..+..+. +|++|+
T Consensus 10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~~~-~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN--GLSFKGCCSQSDFGTT-SLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS--CCCEEEEEEHHHHSCS-CCCEEE
T ss_pred CEEEcCCCCcccCCCC-CCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCC--ccCcccCccccccccc-ccCEEE
Confidence 4688888888888764 2379999999998 788999887899999999999999 77754 45666677 999999
Q ss_pred ecCCCCccccHhhhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG 199 (402)
Q Consensus 121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (402)
+++|.+..+|..+..+++|++|++++ +.++.++. ..+.++++|++|++.+|.+.. .....+..
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~ 148 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRV---------------AFNGIFNG 148 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSCCEE---------------CSTTTTTT
T ss_pred CCCCccccChhhcCCCCCCCEEECCC-CcccccccchhhhhccCCCEEECCCCcCCc---------------cchhhccc
Confidence 99999999988899999999999999 57777764 458899999999999988742 22234667
Q ss_pred CCCCceEEEEecC
Q 045968 200 LKYLEVLELSLGS 212 (402)
Q Consensus 200 l~~L~~L~l~~~~ 212 (402)
+++|+.|.++++.
T Consensus 149 l~~L~~L~l~~n~ 161 (306)
T 2z66_A 149 LSSLEVLKMAGNS 161 (306)
T ss_dssp CTTCCEEECTTCE
T ss_pred CcCCCEEECCCCc
Confidence 7888888887543
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=175.19 Aligned_cols=242 Identities=19% Similarity=0.246 Sum_probs=184.8
Q ss_pred cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEE
Q 045968 42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLD 120 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~ 120 (402)
..+.++..+..++.+|... .++++.|++++| .+..++...|.++++|++|++++| .++.+ +..|..+. +|++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~i~~~~~~~l~-~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI-STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN--HIRTIEIGAFNGLA-NLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC-CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSS--CCCEECGGGGTTCS-SCCEEE
T ss_pred CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCC--cCCccChhhccCCc-cCCEEE
Confidence 3567888888888887643 378999999998 888888777999999999999999 89887 46788888 999999
Q ss_pred ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968 121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG 199 (402)
Q Consensus 121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (402)
+++|.+..+|.. +..+++|++|++++ +.++.++...+.++++|++|++.++.... ......+..
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~ 183 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLS--------------YISEGAFEG 183 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTT
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcc--------------eeCcchhhc
Confidence 999999998874 88999999999999 68888887679999999999999866542 122234678
Q ss_pred CCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc-cccccccEEecccccCcccCc-
Q 045968 200 LKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDVT- 277 (402)
Q Consensus 200 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~- 277 (402)
+++|+.|+++.+....++.+ ....+|+.|++++|.++.+ .+.. ..+++|+.|+++++ .++.++
T Consensus 184 l~~L~~L~L~~n~l~~~~~~----~~l~~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~L~~n-~l~~~~~ 248 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLREIPNL----TPLIKLDELDLSGNHLSAI----------RPGSFQGLMHLQKLWMIQS-QIQVIER 248 (440)
T ss_dssp CSSCCEEECTTSCCSSCCCC----TTCSSCCEEECTTSCCCEE----------CTTTTTTCTTCCEEECTTC-CCCEECT
T ss_pred ccccCeecCCCCcCcccccc----CCCcccCEEECCCCccCcc----------ChhhhccCccCCEEECCCC-ceeEECh
Confidence 89999999987765544322 2233444444444444333 2221 16889999999998 677763
Q ss_pred -ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968 278 -FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP 330 (402)
Q Consensus 278 -~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 330 (402)
.+..+++|++|++++|.. +.++. ..+..+++|+.|++++++
T Consensus 249 ~~~~~l~~L~~L~L~~N~l-~~~~~-----------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNL-TLLPH-----------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TSSTTCTTCCEEECTTSCC-CCCCT-----------TTTSSCTTCCEEECCSSC
T ss_pred hhhcCCCCCCEEECCCCCC-CccCh-----------hHhccccCCCEEEcCCCC
Confidence 577899999999999743 33322 356778999999999855
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=2e-19 Score=176.29 Aligned_cols=242 Identities=18% Similarity=0.198 Sum_probs=183.3
Q ss_pred cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEE
Q 045968 42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLD 120 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~ 120 (402)
..+.++..+..+..+|... .+++++|++++| .+..+++..|..+++|++|++++| .++.+ +..|..+. +|++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~-~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRN--SIRQIEVGAFNGLA-SLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCT-TCCEEE
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCC--ccCCcChhhccCcc-cCCEEE
Confidence 3567888888888887542 378999999998 888887766999999999999999 89887 46788888 999999
Q ss_pred ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968 121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG 199 (402)
Q Consensus 121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (402)
+++|.+..+|.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.... ......+..
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~ 194 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLE--------------YISEGAFEG 194 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTT
T ss_pred CCCCcCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCcc--------------ccChhhccC
Confidence 999999988876 78899999999999 68888888779999999999999865542 122234677
Q ss_pred CCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc-cccccccEEecccccCcccC--
Q 045968 200 LKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDV-- 276 (402)
Q Consensus 200 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l-- 276 (402)
+++|+.|+++.+....++. .....+|+.|++++|.+.. ..+.. ..+++|+.|+++++ .++.+
T Consensus 195 l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~----------~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 259 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDMPN----LTPLVGLEELEMSGNHFPE----------IRPGSFHGLSSLKKLWVMNS-QVSLIER 259 (452)
T ss_dssp CTTCCEEECTTSCCSSCCC----CTTCTTCCEEECTTSCCSE----------ECGGGGTTCTTCCEEECTTS-CCCEECT
T ss_pred CCCCCEEECCCCccccccc----ccccccccEEECcCCcCcc----------cCcccccCccCCCEEEeCCC-cCceECH
Confidence 8999999998776554432 2223344455444444433 22221 16889999999998 67665
Q ss_pred cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968 277 TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP 330 (402)
Q Consensus 277 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 330 (402)
..+..+++|+.|++++|. ++.++. ..+..+++|+.|++++++
T Consensus 260 ~~~~~l~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNN-LSSLPH-----------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCT-----------TSSTTCTTCCEEECCSSC
T ss_pred HHhcCCCCCCEEECCCCc-CCccCh-----------HHhccccCCCEEEccCCC
Confidence 357788999999999974 343322 356778999999999865
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=8e-19 Score=164.85 Aligned_cols=287 Identities=19% Similarity=0.163 Sum_probs=202.1
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+...+..+..+|... .++++.|++++|.+..++. ...+++|++|++++| .+..+++..|..+++|++|++++|
T Consensus 36 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n- 112 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKN- 112 (332)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSS-
T ss_pred CEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCC-
Confidence 45566666777777533 3789999999999998854 489999999999998 788876666999999999999999
Q ss_pred ccccccccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccc--cchhhhhCCCCCcEEEeeeecccc
Q 045968 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIR--IPRQLISKFSRLRVLRMFAIGYDR 176 (402)
Q Consensus 100 ~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 176 (402)
.++.+|..+. . +|++|++++|.+..+|.. +..+++|++|++++ +.++. +....+..+ +|++|++.++.+..
T Consensus 113 -~l~~l~~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 113 -HLVEIPPNLP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp -CCCSCCSSCC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS-CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred -cCCccCcccc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCC-CccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 8998887665 4 999999999999988765 78999999999999 46543 333346677 99999999998764
Q ss_pred cccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCC-
Q 045968 177 FHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRRE- 255 (402)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~- 255 (402)
.+. .+ .++|+.|+++++....+. +......++ |++|+++++......+.
T Consensus 187 l~~----------------~~--~~~L~~L~l~~n~i~~~~--~~~l~~l~~----------L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 187 IPK----------------DL--PETLNELHLDHNKIQAIE--LEDLLRYSK----------LYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp CCS----------------SS--CSSCSCCBCCSSCCCCCC--TTSSTTCTT----------CSCCBCCSSCCCCCCTTG
T ss_pred cCc----------------cc--cCCCCEEECCCCcCCccC--HHHhcCCCC----------CCEEECCCCcCCcCChhH
Confidence 210 11 267888888866544332 111222334 44555555444333332
Q ss_pred ccccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccc--
Q 045968 256 PFVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNL-- 332 (402)
Q Consensus 256 ~~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-- 332 (402)
-..+++|+.|++++| .++.++ .+..+++|++|++++|. ++.++...+.+. .....++.|+.|++.+++..
T Consensus 237 ~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~-----~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 237 LSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV-----GFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp GGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS-----SCCSSSCCBSEEECCSSSSCGG
T ss_pred hhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHcccc-----ccccccccccceEeecCccccc
Confidence 116899999999998 788876 58889999999999965 444433222211 12233688999999997633
Q ss_pred cccccCccCCCCccEEEecCCC
Q 045968 333 ESIYWKPLPFTRLKEMAVLGCD 354 (402)
Q Consensus 333 ~~i~~~~~~~~~L~~L~i~~c~ 354 (402)
...+.....+++|+.+++++++
T Consensus 310 ~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 310 EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GSCGGGGTTBCCSTTEEC----
T ss_pred ccCcccccccchhhhhhccccc
Confidence 2222233457889999888765
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=183.42 Aligned_cols=319 Identities=19% Similarity=0.186 Sum_probs=214.4
Q ss_pred cCcEEEEeCCccccC--CCccCCccceEEEccCC-cccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEE
Q 045968 20 KRNFLVRAGAGLKEA--PDVKGWENVRRLSLMQN-QIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLK 94 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 94 (402)
....+..+...+..+ ..+..+.+|+.|++++| .+..++. ...+++|++|++++| .+..+++..|.++++|++|+
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEE
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEee
Confidence 345666666666655 35788999999999999 4445532 488999999999999 77777666699999999999
Q ss_pred ccCCCccccc-cccc--cccccccccEEEecCCCCcccc--HhhhcCCCCcEEEccCCCCccccchhhhhCC--CCCcEE
Q 045968 95 MSNCGQGRLK-LPVG--MSVLGSSLELLDISCTGITELP--EELKKLVNLKCLNLRWTGALIRIPRQLISKF--SRLRVL 167 (402)
Q Consensus 95 l~~~~~~i~~-l~~~--~~~l~~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L 167 (402)
+++| .+.. ++.. +..+. +|++|++++|.+..++ ..++++++|++|++++ +.++.+....+..+ ++|+.|
T Consensus 104 Ls~n--~l~~~~~~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 104 LYFC--GLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CTTC--CCSSCCSTTCCCSSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGGHHHHHCSSCCC
T ss_pred CcCC--CCCcccccCccccccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHHcccccCCccceE
Confidence 9999 7875 4443 78888 9999999999988653 5689999999999999 46655443336666 788999
Q ss_pred EeeeecccccccC-------------CCcccccCC-----cchhhHhhhcCCCCceEEEEecCc------hhhHhhh-h-
Q 045968 168 RMFAIGYDRFHEA-------------PEDSVLFGG-----GEVLIQELLGLKYLEVLELSLGSY------HALQILL-S- 221 (402)
Q Consensus 168 ~l~~~~~~~~~~~-------------~~~~~~~~~-----~~~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~-~- 221 (402)
++..|.+...... +...+++.+ ....+........++.+.+..+.. ..+.... .
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 8888876432110 000011111 000111111112334444331000 0000000 0
Q ss_pred -hhhhcccceeeEeccc--------------eeeeEeccccccccCCCCc-cccccccEEecccccCcccC--cccccCC
Q 045968 222 -SNKLKSCIRSLCLDGF--------------ELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDV--TFLVFAP 283 (402)
Q Consensus 222 -~~~~~~~L~~L~l~~~--------------~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l--~~~~~l~ 283 (402)
..-...+|+.|+++++ +|+.|+++++......+.. ..+++|+.|++++| .++.+ ..+..++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCC
Confidence 0111357888888876 7888888887775554432 16889999999998 67665 3678899
Q ss_pred CCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCCCC
Q 045968 284 NLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVD 362 (402)
Q Consensus 284 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~~ 362 (402)
+|+.|++++|.. ..+. ...+..+++|+.|+++++ .+..++. +++|+.|+++++ +++.+|..
T Consensus 339 ~L~~L~L~~N~i-~~~~-----------~~~~~~l~~L~~L~Ls~N-~l~~i~~----~~~L~~L~l~~N-~l~~l~~~ 399 (844)
T 3j0a_A 339 KVAYIDLQKNHI-AIIQ-----------DQTFKFLEKLQTLDLRDN-ALTTIHF----IPSIPDIFLSGN-KLVTLPKI 399 (844)
T ss_dssp TCCEEECCSCCC-CCCC-----------SSCSCSCCCCCEEEEETC-CSCCCSS----CCSCSEEEEESC-CCCCCCCC
T ss_pred CCCEEECCCCCC-CccC-----------hhhhcCCCCCCEEECCCC-CCCcccC----CCCcchhccCCC-Cccccccc
Confidence 999999999753 3332 135778999999999985 4555443 689999999886 46677643
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=2.5e-18 Score=168.28 Aligned_cols=275 Identities=23% Similarity=0.232 Sum_probs=151.3
Q ss_pred cCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 20 KRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
+...+......+..+|.. +++++.|++++|.+..++... ++|++|++++| .+..+|. +..+++|++|++++|
T Consensus 92 ~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n-~l~~lp~--~~~l~~L~~L~l~~N- 163 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNN-QLEKLPE--LQNSSFLKIIDVDNN- 163 (454)
T ss_dssp TCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSS-
T ss_pred CCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCC--CCCCEEECcCC-CCCCCcc--cCCCCCCCEEECCCC-
Confidence 345566666566655532 356777777777666554332 56667777666 5555552 666666777777666
Q ss_pred ccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCC-------------------CCccccchhhhhC
Q 045968 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWT-------------------GALIRIPRQLISK 160 (402)
Q Consensus 100 ~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~-------------------~~~~~~~~~~l~~ 160 (402)
.++.+|..+ . +|++|++++|.+..+| .+..+++|+.|++++| +.++.+|. +..
T Consensus 164 -~l~~lp~~~---~-~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~--~~~ 235 (454)
T 1jl5_A 164 -SLKKLPDLP---P-SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE--LQN 235 (454)
T ss_dssp -CCSCCCCCC---T-TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC--CTT
T ss_pred -cCcccCCCc---c-cccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc--cCC
Confidence 565554332 2 5666666666555555 3555555555555552 23334442 445
Q ss_pred CCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc---
Q 045968 161 FSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--- 237 (402)
Q Consensus 161 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--- 237 (402)
+++|++|++.+|.+... .. .+++|+.|+++.+....++. ....|+.|++++|
T Consensus 236 l~~L~~L~l~~N~l~~l-----------------~~--~~~~L~~L~l~~N~l~~l~~------~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKTL-----------------PD--LPPSLEALNVRDNYLTDLPE------LPQSLTFLDVSENIFS 290 (454)
T ss_dssp CTTCCEEECCSSCCSSC-----------------CS--CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS
T ss_pred CCCCCEEECCCCcCCcc-----------------cc--cccccCEEECCCCcccccCc------ccCcCCEEECcCCccC
Confidence 55555555555544321 11 23677888887655443322 2357777877776
Q ss_pred -------eeeeEeccccccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCcc
Q 045968 238 -------ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPE 310 (402)
Q Consensus 238 -------~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 310 (402)
+|++|+++++....... ..++|+.|+++++ .++.++.. +++|++|++++|.. +.++
T Consensus 291 ~l~~~~~~L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~l-~~lp---------- 353 (454)
T 1jl5_A 291 GLSELPPNLYYLNASSNEIRSLCD---LPPSLEELNVSNN-KLIELPAL--PPRLERLIASFNHL-AEVP---------- 353 (454)
T ss_dssp EESCCCTTCCEEECCSSCCSEECC---CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCC-SCCC----------
T ss_pred cccCcCCcCCEEECcCCcCCcccC---CcCcCCEEECCCC-cccccccc--CCcCCEEECCCCcc-cccc----------
Confidence 46667777665543221 2368999999988 67766543 68999999998743 3331
Q ss_pred ccCCCCCCCccceeecCcccccc--ccccCccCC-------------CCccEEEecCCCCCCC
Q 045968 311 MMGHISPFENLQRLNLEDLPNLE--SIYWKPLPF-------------TRLKEMAVLGCDQLEK 358 (402)
Q Consensus 311 ~~~~~~~l~~L~~L~l~~c~~l~--~i~~~~~~~-------------~~L~~L~i~~c~~L~~ 358 (402)
. .+++|+.|+++++.-.. .++.....+ ++|+.|++++++ ++.
T Consensus 354 ---~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~ 410 (454)
T 1jl5_A 354 ---E--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LRE 410 (454)
T ss_dssp ---C--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred ---c--hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCc
Confidence 1 46889999998864222 344333333 789999998764 553
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1.3e-17 Score=169.60 Aligned_cols=131 Identities=24% Similarity=0.267 Sum_probs=112.3
Q ss_pred ccCcEEEEeCCccccCC--CccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEE
Q 045968 19 EKRNFLVRAGAGLKEAP--DVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLK 94 (402)
Q Consensus 19 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 94 (402)
.....+..+...+..++ .+.++++|+.|++++|.++.+++. ..+++|++|++++| .+..+++..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 34567777888888875 488899999999999999998763 78999999999999 88999988899999999999
Q ss_pred ccCCCccccccc-cccccccccccEEEecCCCCcc--ccHhhhcCCCCcEEEccCCCCccccc
Q 045968 95 MSNCGQGRLKLP-VGMSVLGSSLELLDISCTGITE--LPEELKKLVNLKCLNLRWTGALIRIP 154 (402)
Q Consensus 95 l~~~~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~ 154 (402)
+++| .++.++ ..|+.+. +|++|++++|.+.. +|..+..+++|++|++++ +.++.++
T Consensus 131 Ls~N--~l~~l~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~ 189 (635)
T 4g8a_A 131 AVET--NLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIY 189 (635)
T ss_dssp CTTS--CCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEEC
T ss_pred CCCC--cCCCCChhhhhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccc
Confidence 9999 899885 4588888 99999999998875 567789999999999998 4555544
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1e-18 Score=163.09 Aligned_cols=267 Identities=13% Similarity=0.066 Sum_probs=193.4
Q ss_pred cceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEE
Q 045968 42 NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELL 119 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L 119 (402)
+++..++..+.+...+.. ..+++|++|++++| .+..+++..+..+++|++|++++| .+...+. +..+. +|++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~-~~~l~-~L~~L 85 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN--VLYETLD-LESLS-TLRTL 85 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS--CCEEEEE-ETTCT-TCCEE
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC--cCCcchh-hhhcC-CCCEE
Confidence 455566666666543322 56789999999998 888888777999999999999999 8887654 77788 99999
Q ss_pred EecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968 120 DISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG 199 (402)
Q Consensus 120 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (402)
++++|.+..++ ..++|++|++++ +.++.++.. .+++|++|++.+|.+.. .....+..
T Consensus 86 ~Ls~n~l~~l~----~~~~L~~L~l~~-n~l~~~~~~---~~~~L~~L~l~~N~l~~---------------~~~~~~~~ 142 (317)
T 3o53_A 86 DLNNNYVQELL----VGPSIETLHAAN-NNISRVSCS---RGQGKKNIYLANNKITM---------------LRDLDEGC 142 (317)
T ss_dssp ECCSSEEEEEE----ECTTCCEEECCS-SCCSEEEEC---CCSSCEEEECCSSCCCS---------------GGGBCTGG
T ss_pred ECcCCcccccc----CCCCcCEEECCC-CccCCcCcc---ccCCCCEEECCCCCCCC---------------ccchhhhc
Confidence 99999988776 348999999999 577777653 47899999999998853 12234567
Q ss_pred CCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccC-cc
Q 045968 200 LKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV-TF 278 (402)
Q Consensus 200 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~ 278 (402)
+++|+.|+++++....... .......+.|+.|++++|.++.+ .+.. .+++|+.|++++| .++.+ +.
T Consensus 143 l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~----------~~~~-~l~~L~~L~Ls~N-~l~~l~~~ 209 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDV----------KGQV-VFAKLKTLDLSSN-KLAFMGPE 209 (317)
T ss_dssp GSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEE----------ECCC-CCTTCCEEECCSS-CCCEECGG
T ss_pred cCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCccc----------cccc-ccccCCEEECCCC-cCCcchhh
Confidence 8899999998765544321 11111234555555555554443 2233 5889999999998 77776 45
Q ss_pred cccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccc-cccccCccCCCCccEEEecCCCCCC
Q 045968 279 LVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNL-ESIYWKPLPFTRLKEMAVLGCDQLE 357 (402)
Q Consensus 279 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~i~~~~~~~~~L~~L~i~~c~~L~ 357 (402)
+..+++|++|++++|.. +.++ ..+..+++|+.|++++++-. ..++.....+++|+.+++.++..++
T Consensus 210 ~~~l~~L~~L~L~~N~l-~~l~------------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKL-VLIE------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGGGTTCSEEECTTSCC-CEEC------------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hcccCcccEEECcCCcc-cchh------------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 77889999999999754 3443 35677899999999987654 3444445667899999998777777
Q ss_pred CCCCC
Q 045968 358 KLPVD 362 (402)
Q Consensus 358 ~lp~~ 362 (402)
..+..
T Consensus 277 ~~~~~ 281 (317)
T 3o53_A 277 GQNEE 281 (317)
T ss_dssp SSSSC
T ss_pred CCchh
Confidence 65433
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2.1e-17 Score=167.13 Aligned_cols=250 Identities=20% Similarity=0.175 Sum_probs=191.7
Q ss_pred cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEe
Q 045968 42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI 121 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L 121 (402)
+++.|+++++.++.+|.... ++|++|++++| .+..+|. .+++|++|++++| .++.+|. .+. +|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N--~l~~lp~---~l~-~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGN--QLTSLPV---LPP-GLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSC--CCSCCCC---CCT-TCCEEEE
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCC--cCCcCCC---CCC-CCCEEEC
Confidence 58999999999998887543 89999999999 7888776 5789999999999 8988876 455 9999999
Q ss_pred cCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCC
Q 045968 122 SCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLK 201 (402)
Q Consensus 122 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 201 (402)
++|.+..+|. .+++|+.|++++ +.++.+|.. +++|++|++.+|.+... . ..++
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~-N~l~~lp~~----l~~L~~L~Ls~N~l~~l-----------------~--~~~~ 161 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLASL-----------------P--ALPS 161 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCS-SCCSCCCCC----CTTCCEEECCSSCCSCC-----------------C--CCCT
T ss_pred cCCcCCCCCC---CCCCcCEEECCC-CCCCcCCCC----CCCCCEEECcCCcCCCc-----------------C--CccC
Confidence 9999999887 678999999999 578888863 58999999999987531 0 1346
Q ss_pred CCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCccccc
Q 045968 202 YLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVF 281 (402)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 281 (402)
+|+.|.+..+....++ ..++ +|+.|+++++.....+. .+++|+.|++++| .++.++. .
T Consensus 162 ~L~~L~L~~N~l~~l~------~~~~----------~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N-~l~~l~~--~ 219 (622)
T 3g06_A 162 ELCKLWAYNNQLTSLP------MLPS----------GLQELSVSDNQLASLPT---LPSELYKLWAYNN-RLTSLPA--L 219 (622)
T ss_dssp TCCEEECCSSCCSCCC------CCCT----------TCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSSCCC--C
T ss_pred CCCEEECCCCCCCCCc------ccCC----------CCcEEECCCCCCCCCCC---ccchhhEEECcCC-cccccCC--C
Confidence 7888988876554433 2233 45555555554433222 4689999999998 7887764 3
Q ss_pred CCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCCC
Q 045968 282 APNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPV 361 (402)
Q Consensus 282 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~ 361 (402)
+++|+.|++++|.. +.+ ...+++|+.|+++++ .+..++. .+++|+.|++++| +++.+|.
T Consensus 220 ~~~L~~L~Ls~N~L-~~l---------------p~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 220 PSGLKELIVSGNRL-TSL---------------PVLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp CTTCCEEECCSSCC-SCC---------------CCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCG
T ss_pred CCCCCEEEccCCcc-CcC---------------CCCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCH
Confidence 58999999999743 322 156789999999996 6777766 5699999999987 6888886
Q ss_pred CCCCCCCCeeEEE
Q 045968 362 DSNSAKERKFVIR 374 (402)
Q Consensus 362 ~~~~~~~~~~~~~ 374 (402)
..... ++++.+.
T Consensus 279 ~l~~l-~~L~~L~ 290 (622)
T 3g06_A 279 SLIHL-SSETTVN 290 (622)
T ss_dssp GGGGS-CTTCEEE
T ss_pred HHhhc-cccCEEE
Confidence 54443 5666554
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1.7e-17 Score=152.24 Aligned_cols=215 Identities=22% Similarity=0.244 Sum_probs=120.1
Q ss_pred EEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcc
Q 045968 24 LVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101 (402)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 101 (402)
+...+.++..+|. ...++++.|+++++.+..++. ...+++|++|++++| .+..+++..+..+++|++|++++| .
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--~ 91 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN--A 91 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC--T
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC--C
Confidence 3344445555543 123466666666666666543 255666666666665 555554444666666666666666 4
Q ss_pred -cccc-ccccccccccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccc
Q 045968 102 -RLKL-PVGMSVLGSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFH 178 (402)
Q Consensus 102 -i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 178 (402)
+..+ +..+..+. +|++|++++|.+..++ ..+..+++|++|++++ +.++.++...+.++++|++|++.+|.+...
T Consensus 92 ~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 168 (285)
T 1ozn_A 92 QLRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSV- 168 (285)
T ss_dssp TCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEE-
T ss_pred CccccCHHHhcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCccccc-
Confidence 5555 44555555 6666666666665553 3355666666666666 355555544456666666666666554321
Q ss_pred cCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccc
Q 045968 179 EAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFV 258 (402)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~ 258 (402)
....+..+++|+.|.++++ .+..+... ... .
T Consensus 169 --------------~~~~~~~l~~L~~L~l~~n--------------------------~l~~~~~~--------~~~-~ 199 (285)
T 1ozn_A 169 --------------PERAFRGLHSLDRLLLHQN--------------------------RVAHVHPH--------AFR-D 199 (285)
T ss_dssp --------------CTTTTTTCTTCCEEECCSS--------------------------CCCEECTT--------TTT-T
T ss_pred --------------CHHHhcCccccCEEECCCC--------------------------cccccCHh--------Hcc-C
Confidence 1112333444444444322 22222110 011 5
Q ss_pred cccccEEecccccCcccCc--ccccCCCCCEEeecCCcc
Q 045968 259 FRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCDA 295 (402)
Q Consensus 259 ~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~ 295 (402)
+++|+.|+++++ .++.++ .+..+++|++|++++|+.
T Consensus 200 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 200 LGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 778888888887 666664 366788888888888654
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=7.2e-18 Score=156.68 Aligned_cols=192 Identities=21% Similarity=0.248 Sum_probs=120.7
Q ss_pred ccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccc
Q 045968 37 VKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSL 116 (402)
Q Consensus 37 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L 116 (402)
...+++++.|++.++.+..++....+++|++|++++| .+..++. +..+++|++|++++| .++.++ .+..+. +|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n--~l~~~~-~~~~l~-~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGN--PLKNVS-AIAGLQ-SI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSC--CCSCCG-GGTTCT-TC
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCC--cCCCch-hhcCCC-CC
Confidence 3445677777777777776666666777777777766 6666655 677777777777777 666654 455566 77
Q ss_pred cEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHh
Q 045968 117 ELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQE 196 (402)
Q Consensus 117 ~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (402)
++|++++|.+..++. +..+++|++|++++ +.++.++. +..+++|++|++.+|.+.. +..
T Consensus 110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~ 168 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP-LAGLSNLQVLYLDL-NQITNISP--LAGLTNLQYLSIGNAQVSD-----------------LTP 168 (308)
T ss_dssp CEEECTTSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCC-----------------CGG
T ss_pred CEEECCCCCCCCchh-hcCCCCCCEEECCC-CccCcCcc--ccCCCCccEEEccCCcCCC-----------------Chh
Confidence 777777777766653 66677777777777 45666654 6667777777777665532 111
Q ss_pred hhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccC
Q 045968 197 LLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV 276 (402)
Q Consensus 197 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 276 (402)
+..+++|+.|+++.+... ...+.. .+++|+.|++++| .++.+
T Consensus 169 l~~l~~L~~L~l~~n~l~------------------------------------~~~~l~-~l~~L~~L~L~~N-~l~~~ 210 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKIS------------------------------------DISPLA-SLPNLIEVHLKNN-QISDV 210 (308)
T ss_dssp GTTCTTCCEEECCSSCCC------------------------------------CCGGGG-GCTTCCEEECTTS-CCCBC
T ss_pred hcCCCCCCEEECCCCccC------------------------------------cChhhc-CCCCCCEEEccCC-ccCcc
Confidence 445555555555433211 111112 5667777777776 56666
Q ss_pred cccccCCCCCEEeecCCc
Q 045968 277 TFLVFAPNLKSLDLDGCD 294 (402)
Q Consensus 277 ~~~~~l~~L~~L~l~~c~ 294 (402)
+.+..+++|+.|++++|+
T Consensus 211 ~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 211 SPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGGTTCTTCCEEEEEEEE
T ss_pred ccccCCCCCCEEEccCCe
Confidence 666667777777777654
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=1.6e-18 Score=161.51 Aligned_cols=228 Identities=14% Similarity=0.137 Sum_probs=174.6
Q ss_pred CccCCccceEEEccC-Cccc-ccCC-CCCCCccceEecccccccc-ccchHHhccCCCCCEEEccCCCcccc-ccccccc
Q 045968 36 DVKGWENVRRLSLMQ-NQIE-TVSE-VPTCPHLLTLFLDFNQELE-MIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMS 110 (402)
Q Consensus 36 ~~~~~~~l~~L~l~~-~~~~-~~~~-~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~ 110 (402)
.+..+++|+.|++++ |.+. .+|. ...+++|++|++++| .+. .+|.. +..+++|++|++++| .+. .+|..+.
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N--~l~~~~p~~~~ 146 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYN--ALSGTLPPSIS 146 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSS--EEESCCCGGGG
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCC--ccCCcCChHHh
Confidence 577889999999995 7776 3554 478999999999999 665 56655 899999999999999 888 5688899
Q ss_pred cccccccEEEecCCCCc-cccHhhhcCC-CCcEEEccCCCCcc-ccchhhhhCCCCCcEEEeeeecccccccCCCccccc
Q 045968 111 VLGSSLELLDISCTGIT-ELPEELKKLV-NLKCLNLRWTGALI-RIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLF 187 (402)
Q Consensus 111 ~l~~~L~~L~L~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 187 (402)
.+. +|++|++++|.+. .+|..+..++ +|+.|++++| .++ .+|.. +..++ |++|++.+|.+..
T Consensus 147 ~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~-~~~l~-L~~L~Ls~N~l~~----------- 211 (313)
T 1ogq_A 147 SLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPT-FANLN-LAFVDLSRNMLEG----------- 211 (313)
T ss_dssp GCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGG-GGGCC-CSEEECCSSEEEE-----------
T ss_pred cCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChH-HhCCc-ccEEECcCCcccC-----------
Confidence 998 9999999999998 8899999998 9999999995 555 56654 88887 9999999988742
Q ss_pred CCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEec
Q 045968 188 GGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTM 267 (402)
Q Consensus 188 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l 267 (402)
.....+..+++|+.|+++.+. +. ..++....+++|+.|++
T Consensus 212 ----~~~~~~~~l~~L~~L~L~~N~--------------------------l~----------~~~~~~~~l~~L~~L~L 251 (313)
T 1ogq_A 212 ----DASVLFGSDKNTQKIHLAKNS--------------------------LA----------FDLGKVGLSKNLNGLDL 251 (313)
T ss_dssp ----CCGGGCCTTSCCSEEECCSSE--------------------------EC----------CBGGGCCCCTTCCEEEC
T ss_pred ----cCCHHHhcCCCCCEEECCCCc--------------------------ee----------eecCcccccCCCCEEEC
Confidence 233445667777777776432 21 11111115788999999
Q ss_pred ccccCcc-cCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccc
Q 045968 268 VLCHKLK-DVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIY 336 (402)
Q Consensus 268 ~~~~~l~-~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~ 336 (402)
++| .++ .++ .+..+++|++|++++|.....++ ....+++|+.|++.+++.+...+
T Consensus 252 s~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-------------~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 252 RNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-------------QGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECC-------------CSTTGGGSCGGGTCSSSEEESTT
T ss_pred cCC-cccCcCChHHhcCcCCCEEECcCCcccccCC-------------CCccccccChHHhcCCCCccCCC
Confidence 888 565 444 67788999999999986544443 23778999999999988776543
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=1.5e-17 Score=152.70 Aligned_cols=218 Identities=19% Similarity=0.192 Sum_probs=156.9
Q ss_pred eEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEec
Q 045968 44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDIS 122 (402)
Q Consensus 44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~ 122 (402)
+.++..++.++.+|.. ..++|++|++++| .+..++...|..+++|++|++++| .+..+ +..+..+. +|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~-~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN--VLARIDAAAFTGLA-LLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCT-TCCEEECC
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC--ccceeCHhhcCCcc-CCCEEeCC
Confidence 5678888888877753 3578999999988 778887766889999999999999 78877 66788888 99999999
Q ss_pred CCC-Cccc-cHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968 123 CTG-ITEL-PEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL 200 (402)
Q Consensus 123 ~~~-l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 200 (402)
+|. +..+ |..+..+++|++|++++ +.++.++...+.++++|++|++.+|.+... ....+..+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l 152 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDNALQAL---------------PDDTFRDL 152 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTTC
T ss_pred CCCCccccCHHHhcCCcCCCEEECCC-CcCCEECHhHhhCCcCCCEEECCCCccccc---------------CHhHhccC
Confidence 986 7777 55688889999999998 567777555588899999999988877431 11234555
Q ss_pred CCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccC--cc
Q 045968 201 KYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV--TF 278 (402)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~ 278 (402)
++|+.|+++++ .++.+.-. ... .+++|+.|+++++ .++.+ ..
T Consensus 153 ~~L~~L~l~~n--------------------------~l~~~~~~--------~~~-~l~~L~~L~l~~n-~l~~~~~~~ 196 (285)
T 1ozn_A 153 GNLTHLFLHGN--------------------------RISSVPER--------AFR-GLHSLDRLLLHQN-RVAHVHPHA 196 (285)
T ss_dssp TTCCEEECCSS--------------------------CCCEECTT--------TTT-TCTTCCEEECCSS-CCCEECTTT
T ss_pred CCccEEECCCC--------------------------cccccCHH--------Hhc-CccccCEEECCCC-cccccCHhH
Confidence 66666665533 22222110 012 5788899999888 56664 35
Q ss_pred cccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968 279 LVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP 330 (402)
Q Consensus 279 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 330 (402)
+..+++|++|++++|.. +.++. ..+..+++|+.|++++++
T Consensus 197 ~~~l~~L~~L~l~~n~l-~~~~~-----------~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNL-SALPT-----------EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTCTTCCEEECCSSCC-SCCCH-----------HHHTTCTTCCEEECCSSC
T ss_pred ccCcccccEeeCCCCcC-CcCCH-----------HHcccCcccCEEeccCCC
Confidence 67788999999988744 22221 245678888888888865
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.5e-18 Score=171.51 Aligned_cols=215 Identities=22% Similarity=0.179 Sum_probs=139.3
Q ss_pred CCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccc
Q 045968 39 GWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSL 116 (402)
Q Consensus 39 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L 116 (402)
.+++|+.|++++|.+..++. +..+++|++|++++| .+...++ +..+++|++|++++| .++.++.. . +|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N--~l~~l~~~----~-~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNN--YVQELLVG----P-SI 101 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSS--EEEEEEEC----T-TC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCC--cCCCCCCC----C-Cc
Confidence 34578888888888887653 377888888888887 6665554 788888888888888 77766532 4 88
Q ss_pred cEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHh
Q 045968 117 ELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQE 196 (402)
Q Consensus 117 ~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (402)
++|++++|.+..++.. .+++|+.|++++ +.++.++...+..+++|++|++++|.+.. .....
T Consensus 102 ~~L~L~~N~l~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~ 163 (487)
T 3oja_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDT---------------VNFAE 163 (487)
T ss_dssp CEEECCSSCCCCEEEC--CCSSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCE---------------EEGGG
T ss_pred CEEECcCCcCCCCCcc--ccCCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCC---------------cChHH
Confidence 8888888888776543 467888888888 46666544347788888888888887742 12233
Q ss_pred hh-cCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCccc
Q 045968 197 LL-GLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKD 275 (402)
Q Consensus 197 l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 275 (402)
+. .+++|+.|+++++....+.... ..++|+.|++++|.+. ..++....+++|+.|++++| .++.
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~~~~----~l~~L~~L~Ls~N~l~----------~~~~~~~~l~~L~~L~Ls~N-~l~~ 228 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSNKLA----------FMGPEFQSAAGVTWISLRNN-KLVL 228 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSSCCC----------EECGGGGGGTTCSEEECTTS-CCCE
T ss_pred HhhhCCcccEEecCCCccccccccc----cCCCCCEEECCCCCCC----------CCCHhHcCCCCccEEEecCC-cCcc
Confidence 33 5777888887765543331111 1333444433333332 22222115667777777776 5555
Q ss_pred Cc-ccccCCCCCEEeecCCcch
Q 045968 276 VT-FLVFAPNLKSLDLDGCDAM 296 (402)
Q Consensus 276 l~-~~~~l~~L~~L~l~~c~~l 296 (402)
++ .+..+++|+.|++++|+..
T Consensus 229 lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 229 IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECTTCCCCTTCCEEECTTCCBC
T ss_pred cchhhccCCCCCEEEcCCCCCc
Confidence 54 4555677777777776554
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=9.5e-17 Score=146.58 Aligned_cols=216 Identities=21% Similarity=0.218 Sum_probs=147.9
Q ss_pred EEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968 23 FLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100 (402)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (402)
.+...+..+..+|..- .++++.|++++|.+..++. ...+++|++|++++| .+..++...|..+++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-- 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-- 86 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC--
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC--
Confidence 3445555666676522 2578999999998888764 477889999999988 777777766888999999999998
Q ss_pred cccccc-cccccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccc--cchhhhhCCCCCcEEEeeeecccc
Q 045968 101 GRLKLP-VGMSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIR--IPRQLISKFSRLRVLRMFAIGYDR 176 (402)
Q Consensus 101 ~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 176 (402)
.+..++ ..+..+. +|++|++++|.+..++. .+..+++|++|++++ +.++. +|.. +.++++|++|++.+|.+..
T Consensus 87 ~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 87 PIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp CCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred ccCccChhhhcCCc-cccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCCCCc
Confidence 787764 5677787 99999999988887765 478888999999988 46665 4554 8888999999998887753
Q ss_pred cccCCCcccccCCcchhhHhhhcCCCCc-eEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCC
Q 045968 177 FHEAPEDSVLFGGGEVLIQELLGLKYLE-VLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRRE 255 (402)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~ 255 (402)
. ....+..+..++.+. .|+++.+ .+..+ .+.
T Consensus 164 ~------------~~~~~~~l~~L~~l~l~L~ls~n--------------------------~l~~~----------~~~ 195 (276)
T 2z62_A 164 I------------YCTDLRVLHQMPLLNLSLDLSLN--------------------------PMNFI----------QPG 195 (276)
T ss_dssp E------------CGGGGHHHHTCTTCCEEEECCSS--------------------------CCCEE----------CTT
T ss_pred C------------CHHHhhhhhhccccceeeecCCC--------------------------ccccc----------Ccc
Confidence 2 112333344444333 3333322 22222 111
Q ss_pred ccccccccEEecccccCcccCc--ccccCCCCCEEeecCCc
Q 045968 256 PFVFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCD 294 (402)
Q Consensus 256 ~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~ 294 (402)
.....+|+.|+++++ .++.++ .+..+++|++|++++|+
T Consensus 196 ~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 196 AFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 113447888888877 566664 34667788888887653
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=1.5e-18 Score=161.65 Aligned_cols=244 Identities=17% Similarity=0.129 Sum_probs=173.3
Q ss_pred CccceEEEccCCcccccCCCCCCCccceEeccccccccc--cchHHhc-------cCCCCCEEEccCCCcccc-cccccc
Q 045968 40 WENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEM--IADGFFQ-------LMPSLKVLKMSNCGQGRL-KLPVGM 109 (402)
Q Consensus 40 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~-------~l~~L~~L~l~~~~~~i~-~l~~~~ 109 (402)
.++++.+++.+|.+ .+|.. -...|+.|++++| .+.. ++.. +. .+++|++|++++| .++ .+|..+
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~-~~~~L~~L~L~~n-~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~ 115 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQ-FTDIIKSLSLKRL-TVRAARIPSR-ILFGALRVLGISGLQELTLENL--EVTGTAPPPL 115 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHH-HHHHHHHCCCCEE-EEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE--BCBSCCCCCS
T ss_pred CCCceeEeeccccc-ccHHH-HHHHHhhcccccc-cccCCCcCHH-HHHHHHHhcCcCCccEEEccCC--cccchhHHHH
Confidence 35677777888877 55542 1122888899987 5533 4443 33 6899999999999 887 457765
Q ss_pred --ccccccccEEEecCCCCccccHhhhcC-----CCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCC
Q 045968 110 --SVLGSSLELLDISCTGITELPEELKKL-----VNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPE 182 (402)
Q Consensus 110 --~~l~~~L~~L~L~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 182 (402)
..+. +|++|++++|.+...|..+..+ ++|++|++++ +.++.++...+.++++|++|++.+|.+..
T Consensus 116 ~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------ 187 (312)
T 1wwl_A 116 LEATGP-DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELG------ 187 (312)
T ss_dssp SSCCSC-CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCH------
T ss_pred HHhcCC-CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCc------
Confidence 7777 9999999999998888777766 8999999999 57788876569999999999999998642
Q ss_pred cccccCCcchhhHhh--hcCCCCceEEEEecCchhhHhhhhh-hhhcccceeeEeccceeeeEeccccccccCCCCc--c
Q 045968 183 DSVLFGGGEVLIQEL--LGLKYLEVLELSLGSYHALQILLSS-NKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP--F 257 (402)
Q Consensus 183 ~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~--~ 257 (402)
.......+ ..+++|+.|+++.+....+..++.. ....+ +|++|+++++......+.. .
T Consensus 188 -------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~----------~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 188 -------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV----------QLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp -------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC----------CCSEEECTTSCCCSSCCCSCCC
T ss_pred -------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC----------CCCEEECCCCcCCcccchhhhh
Confidence 11223344 7889999999998776654443322 12233 4455555555544433221 1
Q ss_pred ccccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968 258 VFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP 330 (402)
Q Consensus 258 ~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 330 (402)
.+++|+.|++++| .++.++.... ++|++|++++|.. +.+ ..+..+++|+.|++++++
T Consensus 251 ~l~~L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N~l-~~~-------------p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 251 WPSQLNSLNLSFT-GLKQVPKGLP-AKLSVLDLSYNRL-DRN-------------PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTCCEEECTTS-CCSSCCSSCC-SEEEEEECCSSCC-CSC-------------CCTTTSCEEEEEECTTCT
T ss_pred hcCCCCEEECCCC-ccChhhhhcc-CCceEEECCCCCC-CCC-------------hhHhhCCCCCEEeccCCC
Confidence 4689999999998 7887764322 8999999999754 332 136789999999999853
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=2.8e-17 Score=152.67 Aligned_cols=205 Identities=17% Similarity=0.198 Sum_probs=145.1
Q ss_pred EEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCC
Q 045968 46 LSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTG 125 (402)
Q Consensus 46 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~ 125 (402)
+.+..+.+.++.....+++|++|.+.+| .+..++. +..+++|++|++++| .+..++. +..+. +|++|++++|.
T Consensus 24 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n--~i~~~~~-~~~l~-~L~~L~L~~n~ 96 (308)
T 1h6u_A 24 IAAGKSNVTDTVTQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDN--QITDLAP-LKNLT-KITELELSGNP 96 (308)
T ss_dssp HHTTCSSTTSEECHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS--CCCCCGG-GTTCC-SCCEEECCSCC
T ss_pred HHhCCCCcCceecHHHcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCC--cCCCChh-HccCC-CCCEEEccCCc
Confidence 3344444444444456778888888877 6666653 777888888888888 7777765 67777 88888888888
Q ss_pred CccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCce
Q 045968 126 ITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEV 205 (402)
Q Consensus 126 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 205 (402)
+..++ .+..+++|++|++++ +.++.++. +..+++|++|++.+|.+... ..+..+++|+.
T Consensus 97 l~~~~-~~~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-----------------~~l~~l~~L~~ 155 (308)
T 1h6u_A 97 LKNVS-AIAGLQSIKTLDLTS-TQITDVTP--LAGLSNLQVLYLDLNQITNI-----------------SPLAGLTNLQY 155 (308)
T ss_dssp CSCCG-GGTTCTTCCEEECTT-SCCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------GGGGGCTTCCE
T ss_pred CCCch-hhcCCCCCCEEECCC-CCCCCchh--hcCCCCCCEEECCCCccCcC-----------------ccccCCCCccE
Confidence 77775 577788888888888 46676664 77888888888887776421 11555566666
Q ss_pred EEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCcccccCCCC
Q 045968 206 LELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNL 285 (402)
Q Consensus 206 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L 285 (402)
|+++.+. ++ ...+.. .+++|+.|++++| .++.++.+..+++|
T Consensus 156 L~l~~n~--------------------------l~----------~~~~l~-~l~~L~~L~l~~n-~l~~~~~l~~l~~L 197 (308)
T 1h6u_A 156 LSIGNAQ--------------------------VS----------DLTPLA-NLSKLTTLKADDN-KISDISPLASLPNL 197 (308)
T ss_dssp EECCSSC--------------------------CC----------CCGGGT-TCTTCCEEECCSS-CCCCCGGGGGCTTC
T ss_pred EEccCCc--------------------------CC----------CChhhc-CCCCCCEEECCCC-ccCcChhhcCCCCC
Confidence 6555332 21 111122 6899999999998 78888888899999
Q ss_pred CEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968 286 KSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP 330 (402)
Q Consensus 286 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 330 (402)
++|++++|.. ..+ ..+..+++|+.|++++++
T Consensus 198 ~~L~L~~N~l-~~~-------------~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 198 IEVHLKNNQI-SDV-------------SPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECTTSCC-CBC-------------GGGTTCTTCCEEEEEEEE
T ss_pred CEEEccCCcc-Ccc-------------ccccCCCCCCEEEccCCe
Confidence 9999999754 222 246788999999999864
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=3.9e-17 Score=145.94 Aligned_cols=140 Identities=16% Similarity=0.321 Sum_probs=105.2
Q ss_pred ccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccC-CCccccccc
Q 045968 30 GLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN-CGQGRLKLP 106 (402)
Q Consensus 30 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~-~~~~i~~l~ 106 (402)
++..+|. -..+++.|++++|.++.++. ...+++|++|++++|..+..+++..|.++++|++|++++ | .++.++
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n--~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR--NLTYID 97 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET--TCCEEC
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC--CeeEcC
Confidence 3667776 33578888888888887765 367888888888887437777776688888888888887 6 777774
Q ss_pred -cccccccccccEEEecCCCCccccHhhhcCCCCc---EEEccCCCCccccchhhhhCCCCCc-EEEeeeeccc
Q 045968 107 -VGMSVLGSSLELLDISCTGITELPEELKKLVNLK---CLNLRWTGALIRIPRQLISKFSRLR-VLRMFAIGYD 175 (402)
Q Consensus 107 -~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~ 175 (402)
..|..+. +|++|++++|.+..+|. +..+++|+ .|++++|..++.++...+.++++|+ +|++.++.+.
T Consensus 98 ~~~f~~l~-~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 98 PDALKELP-LLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TTSEECCT-TCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HHHhCCCC-CCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 4566777 88888888888887776 67777777 8888884377777766577788888 8887776653
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=2.3e-17 Score=162.98 Aligned_cols=238 Identities=14% Similarity=0.074 Sum_probs=173.3
Q ss_pred CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCC
Q 045968 60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNL 139 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L 139 (402)
..+++|++|++++| .+..+++..|..+++|++|++++| .+...+. ++.+. +|++|++++|.+..+|.. ++|
T Consensus 31 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~-l~~l~-~L~~L~Ls~N~l~~l~~~----~~L 101 (487)
T 3oja_A 31 QSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN--VLYETLD-LESLS-TLRTLDLNNNYVQELLVG----PSI 101 (487)
T ss_dssp TTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTS--CCEEEEE-CTTCT-TCCEEECCSSEEEEEEEC----TTC
T ss_pred ccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCC--CCCCCcc-cccCC-CCCEEEecCCcCCCCCCC----CCc
Confidence 45679999999998 888887666999999999999999 8886654 77888 999999999998877643 899
Q ss_pred cEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhh
Q 045968 140 KCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQIL 219 (402)
Q Consensus 140 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 219 (402)
+.|++++ +.++.++.. .+++|++|++.+|.+.. .....+..+++|+.|+++++.......
T Consensus 102 ~~L~L~~-N~l~~~~~~---~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~- 161 (487)
T 3oja_A 102 ETLHAAN-NNISRVSCS---RGQGKKNIYLANNKITM---------------LRDLDEGCRSRVQYLDLKLNEIDTVNF- 161 (487)
T ss_dssp CEEECCS-SCCCCEEEC---CCSSCEEEECCSSCCCS---------------GGGBCGGGGSSEEEEECTTSCCCEEEG-
T ss_pred CEEECcC-CcCCCCCcc---ccCCCCEEECCCCCCCC---------------CCchhhcCCCCCCEEECCCCCCCCcCh-
Confidence 9999999 577777653 47899999999998853 222346678899999998765543211
Q ss_pred hhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccC-cccccCCCCCEEeecCCcchHH
Q 045968 220 LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV-TFLVFAPNLKSLDLDGCDAMEE 298 (402)
Q Consensus 220 ~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~l~~L~~L~l~~c~~l~~ 298 (402)
......++.|+.|++++|.+..+ ++.. .+++|+.|++++| .++.+ +.+..+++|+.|++++|.. ..
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~----------~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l-~~ 228 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDV----------KGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKL-VL 228 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE----------ECCC-CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCC-CE
T ss_pred HHHhhhCCcccEEecCCCccccc----------cccc-cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcC-cc
Confidence 11111234555555555544433 3333 6889999999998 67776 4677889999999999754 33
Q ss_pred HhhcCCCCCCccccCCCCCCCccceeecCccccc-cccccCccCCCCccEEEec
Q 045968 299 IISVGKFAETPEMMGHISPFENLQRLNLEDLPNL-ESIYWKPLPFTRLKEMAVL 351 (402)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~i~~~~~~~~~L~~L~i~ 351 (402)
++ ..+..+++|+.|++++++-. ..++.....++.|+.+++.
T Consensus 229 lp------------~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 IE------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EC------------TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cc------------hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 32 35677889999999987644 2444444556788877775
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=7.2e-17 Score=148.58 Aligned_cols=199 Identities=18% Similarity=0.110 Sum_probs=150.6
Q ss_pred ccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccc
Q 045968 37 VKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSL 116 (402)
Q Consensus 37 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L 116 (402)
+..+.+++.+++.++.++.+|... .++++.|++++| .+..+++..|..+++|++|++++| .++.++.. +.+. +|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~-~~l~-~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA--ELTKLQVD-GTLP-VL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS--CCCEEECC-SCCT-TC
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC--ccCcccCC-CCCC-cC
Confidence 455678999999999999887653 378999999998 777877766999999999999999 88888654 5677 99
Q ss_pred cEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHh
Q 045968 117 ELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQE 196 (402)
Q Consensus 117 ~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (402)
++|++++|.+..+|..+..+++|++|++++ +.++.++...+.++++|++|++.+|.+... ....
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~ 143 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTL---------------PPGL 143 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCC---------------CTTT
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCcc---------------Chhh
Confidence 999999999999998889999999999999 688888876689999999999999887532 1223
Q ss_pred hhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc-cccccccEEecccccCccc
Q 045968 197 LLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKD 275 (402)
Q Consensus 197 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~ 275 (402)
+..+++|+.|.++.+. ++ ..++.. ..+++|+.|+++++ .++.
T Consensus 144 ~~~l~~L~~L~L~~N~--------------------------l~----------~l~~~~~~~l~~L~~L~L~~N-~l~~ 186 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNN--------------------------LT----------ELPAGLLNGLENLDTLLLQEN-SLYT 186 (290)
T ss_dssp TTTCTTCCEEECTTSC--------------------------CS----------CCCTTTTTTCTTCCEEECCSS-CCCC
T ss_pred cccccCCCEEECCCCc--------------------------CC----------ccCHHHhcCcCCCCEEECCCC-cCCc
Confidence 4456666666665332 21 111110 04677777777777 5666
Q ss_pred Cc-ccccCCCCCEEeecCCc
Q 045968 276 VT-FLVFAPNLKSLDLDGCD 294 (402)
Q Consensus 276 l~-~~~~l~~L~~L~l~~c~ 294 (402)
++ .+...++|+.|++.+|+
T Consensus 187 ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCC
T ss_pred cChhhcccccCCeEEeCCCC
Confidence 64 45556777888777654
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=3.3e-17 Score=165.71 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=54.7
Q ss_pred ccccccEEecccccC-ccc--Cccc-ccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccc
Q 045968 258 VFRNLHRVTMVLCHK-LKD--VTFL-VFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE 333 (402)
Q Consensus 258 ~~~~L~~L~l~~~~~-l~~--l~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 333 (402)
.+++|++|+++.|.+ +++ +..+ ..+++|++|++++|.. ++.. ....+..+++|+.|++++|+ +.
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~----------~~~~~~~~~~L~~L~l~~n~-l~ 501 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE-SDEG----------LMEFSRGCPNLQKLEMRGCC-FS 501 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS-SHHH----------HHHHHTCCTTCCEEEEESCC-CB
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC-CHHH----------HHHHHhcCcccCeeeccCCC-Cc
Confidence 466777777765532 332 1222 2367788888877653 2211 11234677899999999987 43
Q ss_pred c--cccCccCCCCccEEEecCCCCCCC
Q 045968 334 S--IYWKPLPFTRLKEMAVLGCDQLEK 358 (402)
Q Consensus 334 ~--i~~~~~~~~~L~~L~i~~c~~L~~ 358 (402)
. +......+++|++|++++|. ++.
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred HHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 2 33334457999999999997 654
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=1.4e-17 Score=163.22 Aligned_cols=309 Identities=17% Similarity=0.130 Sum_probs=186.3
Q ss_pred CcEEEEeCCcccc-----C-CCccCCccceEEEccCCcccccC--CC-CCCC----ccceEeccccccccccc----hHH
Q 045968 21 RNFLVRAGAGLKE-----A-PDVKGWENVRRLSLMQNQIETVS--EV-PTCP----HLLTLFLDFNQELEMIA----DGF 83 (402)
Q Consensus 21 ~~~~~~~~~~~~~-----~-~~~~~~~~l~~L~l~~~~~~~~~--~~-~~~~----~L~~L~l~~~~~l~~~~----~~~ 83 (402)
-..+...+..+.. + ..+..+++|+.|++++|.+.+.. .. ..++ +|++|++++| .+.+.. ...
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSST 108 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHH
T ss_pred ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHH
Confidence 4555555545442 1 22455577888888888765421 11 2233 6888888877 555321 334
Q ss_pred hccCCCCCEEEccCCCcccccc-cccccc-----ccccccEEEecCCCCcc-----ccHhhhcCCCCcEEEccCCCCccc
Q 045968 84 FQLMPSLKVLKMSNCGQGRLKL-PVGMSV-----LGSSLELLDISCTGITE-----LPEELKKLVNLKCLNLRWTGALIR 152 (402)
Q Consensus 84 ~~~l~~L~~L~l~~~~~~i~~l-~~~~~~-----l~~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~ 152 (402)
+..+++|++|++++| .+... +..+.. .. +|++|++++|.+.. ++..+..+++|++|++++| .++.
T Consensus 109 l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~ 184 (461)
T 1z7x_W 109 LRTLPTLQELHLSDN--LLGDAGLQLLCEGLLDPQC-RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINE 184 (461)
T ss_dssp TTSCTTCCEEECCSS--BCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHH
T ss_pred HccCCceeEEECCCC--cCchHHHHHHHHHHhcCCC-cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-Ccch
Confidence 778888888888888 66532 222221 23 68888888887764 3445667788888888884 4554
Q ss_pred cchhhhh-----CCCCCcEEEeeeecccccccCCCcccccCCcc-hhhHhhhcCCCCceEEEEecCchhhH--hhhh-hh
Q 045968 153 IPRQLIS-----KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGE-VLIQELLGLKYLEVLELSLGSYHALQ--ILLS-SN 223 (402)
Q Consensus 153 ~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~-~~ 223 (402)
.+...+. ..++|++|++.+|.+... .. .....+..+++|+.|+++++...... .+.. ..
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~------------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSD------------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTT------------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHH------------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence 3222232 356888888888876421 10 12345667888888888866543321 1211 11
Q ss_pred hhcccceeeEeccc------------------eeeeEeccccccccCCCC------ccccccccEEecccccCcccC---
Q 045968 224 KLKSCIRSLCLDGF------------------ELEELKIDYTEIVRKRRE------PFVFRNLHRVTMVLCHKLKDV--- 276 (402)
Q Consensus 224 ~~~~~L~~L~l~~~------------------~L~~L~i~~~~~~~~~~~------~~~~~~L~~L~l~~~~~l~~l--- 276 (402)
...+.|+.|++++| +|++|+++++......+. ....++|+.|++++| .++..
T Consensus 253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~ 331 (461)
T 1z7x_W 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCS 331 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHH
T ss_pred cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHH
Confidence 23567888888877 678888877755221110 002368999999988 56553
Q ss_pred ---cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCC-CCCCccceeecCcccccc-----ccccCccCCCCccE
Q 045968 277 ---TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHI-SPFENLQRLNLEDLPNLE-----SIYWKPLPFTRLKE 347 (402)
Q Consensus 277 ---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~-----~i~~~~~~~~~L~~ 347 (402)
..+..+++|++|++++|. +.+.... .....+ ...++|+.|++++|. +. .++.....+++|++
T Consensus 332 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~-------~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 332 HFSSVLAQNRFLLELQISNNR-LEDAGVR-------ELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp HHHHHHHHCSSCCEEECCSSB-CHHHHHH-------HHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHhhCCCccEEEccCCc-cccccHH-------HHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccE
Confidence 245567999999999974 4443210 000111 226799999999874 43 44444445799999
Q ss_pred EEecCCCCCC
Q 045968 348 MAVLGCDQLE 357 (402)
Q Consensus 348 L~i~~c~~L~ 357 (402)
|++++++ +.
T Consensus 403 L~l~~N~-i~ 411 (461)
T 1z7x_W 403 LDLSNNC-LG 411 (461)
T ss_dssp EECCSSS-CC
T ss_pred EECCCCC-CC
Confidence 9998874 44
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=2.1e-16 Score=143.89 Aligned_cols=128 Identities=21% Similarity=0.300 Sum_probs=92.7
Q ss_pred cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccc-cccccccccEEE
Q 045968 42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVG-MSVLGSSLELLD 120 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~-~~~l~~~L~~L~ 120 (402)
..+.++++++.++.+|.... +++++|++++| .+..++...|..+++|++|++++| .++.++.. |..+. +|++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--~l~~i~~~~~~~l~-~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN--KLQTLPAGIFKELK-NLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS--CCSCCCTTTTSSCT-TCCEEE
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC--ccCeeChhhhcCCC-CCCEEE
Confidence 45677888777777765322 57788888877 677777655778888888888888 77777544 45566 888888
Q ss_pred ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
+++|.+..+|.. +..+++|++|++++ +.++.++...+..+++|++|++.+|.+.
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 888877777654 56778888888887 5667766655777888888888777664
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=5.3e-18 Score=166.26 Aligned_cols=290 Identities=19% Similarity=0.179 Sum_probs=151.1
Q ss_pred ccCCccceEEEccCCcccc-----cCC-CCCCCccceEecccccccccc-chHHhccCC----CCCEEEccCCCcccc--
Q 045968 37 VKGWENVRRLSLMQNQIET-----VSE-VPTCPHLLTLFLDFNQELEMI-ADGFFQLMP----SLKVLKMSNCGQGRL-- 103 (402)
Q Consensus 37 ~~~~~~l~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~----~L~~L~l~~~~~~i~-- 103 (402)
+..+++++.|++++|.+.. ++. ...+++|++|++++| .+.+. +..++..++ +|++|++++| .+.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n--~i~~~ 100 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC--CLTGA 100 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS--CCBGG
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC--CCCHH
Confidence 3455677777777776653 222 255677777777776 45442 223334455 5777777777 555
Q ss_pred ---ccccccccccccccEEEecCCCCccc-cHhh-----hcCCCCcEEEccCCCCccccc----hhhhhCCCCCcEEEee
Q 045968 104 ---KLPVGMSVLGSSLELLDISCTGITEL-PEEL-----KKLVNLKCLNLRWTGALIRIP----RQLISKFSRLRVLRMF 170 (402)
Q Consensus 104 ---~l~~~~~~l~~~L~~L~L~~~~l~~l-p~~i-----~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~ 170 (402)
.++..+..+. +|++|++++|.+... +..+ ...++|++|++++| .++... ...+..+++|++|++.
T Consensus 101 ~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 101 GCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp GHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 2355566666 777777777766532 1111 12456777777774 444321 1225567777777777
Q ss_pred eecccccccCCCcccccCCcchhhHhhh-----cCCCCceEEEEecCchhh--HhhhhhhhhcccceeeEeccc------
Q 045968 171 AIGYDRFHEAPEDSVLFGGGEVLIQELL-----GLKYLEVLELSLGSYHAL--QILLSSNKLKSCIRSLCLDGF------ 237 (402)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~------ 237 (402)
+|.+.. ..+..+. ..++|+.|+++++..... ..++......++|+.|++++|
T Consensus 179 ~n~i~~---------------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 179 NNDINE---------------AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp SSBCHH---------------HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred CCCcch---------------HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 776532 1222221 245777777776544331 123333444556666666665
Q ss_pred -------------eeeeEeccccccccC----CCC-ccccccccEEecccccCcccCc--ccc-----cCCCCCEEeecC
Q 045968 238 -------------ELEELKIDYTEIVRK----RRE-PFVFRNLHRVTMVLCHKLKDVT--FLV-----FAPNLKSLDLDG 292 (402)
Q Consensus 238 -------------~L~~L~i~~~~~~~~----~~~-~~~~~~L~~L~l~~~~~l~~l~--~~~-----~l~~L~~L~l~~ 292 (402)
+|++|+++++..... .+. -..+++|++|+++++ .+++.. .+. ..++|++|++++
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCC
Confidence 355555554433211 010 002455555555555 333211 111 124555555555
Q ss_pred CcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccC------ccCCCCccEEEecCCCCCC
Q 045968 293 CDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWK------PLPFTRLKEMAVLGCDQLE 357 (402)
Q Consensus 293 c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~------~~~~~~L~~L~i~~c~~L~ 357 (402)
|..-..... .....+..+++|+.|+++++ .+.+.... ....++|++|++++| +++
T Consensus 323 n~l~~~~~~--------~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 323 CSFTAACCS--------HFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp SCCBGGGHH--------HHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred CCCchHHHH--------HHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence 542211000 01123445678888888876 34332111 112578888888776 344
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=6.9e-17 Score=151.66 Aligned_cols=233 Identities=16% Similarity=0.113 Sum_probs=119.1
Q ss_pred CCCCEEEccCCCccccccccccccccccccEEEecCCCCcc--ccHhhhcCCCCcEEEccCCCCccc-cchhhhhCCCCC
Q 045968 88 PSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITE--LPEELKKLVNLKCLNLRWTGALIR-IPRQLISKFSRL 164 (402)
Q Consensus 88 ~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L 164 (402)
+++++|++.++ .+...+..+..+. +|++|++++|.+.. ++..+..+++|++|++++| .++. .+. .+.++++|
T Consensus 70 ~~l~~L~l~~n--~l~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~-~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRS--FMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVN-TLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTC--EECSCCCSCCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHH-HHTTCTTC
T ss_pred ccceEEEcCCc--cccccchhhccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHH-HHhcCCCC
Confidence 55666666665 5554433344444 66666666655442 4444555666666666654 3332 222 25556666
Q ss_pred cEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEec-CchhhHhhhhhhhhcc-cceeeEeccceeeeE
Q 045968 165 RVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLG-SYHALQILLSSNKLKS-CIRSLCLDGFELEEL 242 (402)
Q Consensus 165 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~-~L~~L~l~~~~L~~L 242 (402)
++|++.+|.... .......+..+++|+.|+++++ .... ..+......++ +|+.|.+++|.+
T Consensus 145 ~~L~L~~~~~l~-------------~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l~~~L~~L~l~~~~~--- 207 (336)
T 2ast_B 145 VRLNLSGCSGFS-------------EFALQTLLSSCSRLDELNLSWCFDFTE-KHVQVAVAHVSETITQLNLSGYRK--- 207 (336)
T ss_dssp SEEECTTCBSCC-------------HHHHHHHHHHCTTCCEEECCCCTTCCH-HHHHHHHHHSCTTCCEEECCSCGG---
T ss_pred CEEECCCCCCCC-------------HHHHHHHHhcCCCCCEEcCCCCCCcCh-HHHHHHHHhcccCCCEEEeCCCcc---
Confidence 666666552211 1112223445556666666544 2221 11122222233 343333333310
Q ss_pred eccccccccCCCCccccccccEEecccccCccc--CcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCc
Q 045968 243 KIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKD--VTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFEN 320 (402)
Q Consensus 243 ~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~ 320 (402)
.++. ...+.....+++|+.|++++|..+++ ++.+..+++|++|++++|..+... ....+..+++
T Consensus 208 ~~~~---~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----------~~~~l~~~~~ 273 (336)
T 2ast_B 208 NLQK---SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE-----------TLLELGEIPT 273 (336)
T ss_dssp GSCH---HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG-----------GGGGGGGCTT
T ss_pred cCCH---HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH-----------HHHHHhcCCC
Confidence 0000 00001111688899999998854554 457778899999999998744332 1134667899
Q ss_pred cceeecCccccccccccCccCCCCccEEEecCCCCCCCCC
Q 045968 321 LQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLP 360 (402)
Q Consensus 321 L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp 360 (402)
|+.|++++| +..-..... ..+|+.|++ .|.+++.+.
T Consensus 274 L~~L~l~~~--i~~~~~~~l-~~~l~~L~l-~~n~l~~~~ 309 (336)
T 2ast_B 274 LKTLQVFGI--VPDGTLQLL-KEALPHLQI-NCSHFTTIA 309 (336)
T ss_dssp CCEEECTTS--SCTTCHHHH-HHHSTTSEE-SCCCSCCTT
T ss_pred CCEEeccCc--cCHHHHHHH-HhhCcceEE-ecccCcccc
Confidence 999999988 322111110 123555556 566777653
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.8e-16 Score=141.64 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=53.2
Q ss_pred CCCEEEccCCCcccccccc-ccccccccccEEEecCCC-CccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCc
Q 045968 89 SLKVLKMSNCGQGRLKLPV-GMSVLGSSLELLDISCTG-ITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLR 165 (402)
Q Consensus 89 ~L~~L~l~~~~~~i~~l~~-~~~~l~~~L~~L~L~~~~-l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 165 (402)
+|++|++++| .++.++. .+..+. +|++|++++|. +..++. .+..+++|++|++++|+.++.++...+.++++|+
T Consensus 32 ~l~~L~l~~n--~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIET--HLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESC--CCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred cccEEEEeCC--cceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 5666666666 6666543 455555 66667776664 666654 3566667777777665566666654466677777
Q ss_pred EEEeeeeccc
Q 045968 166 VLRMFAIGYD 175 (402)
Q Consensus 166 ~L~l~~~~~~ 175 (402)
+|++.+|.+.
T Consensus 109 ~L~l~~n~l~ 118 (239)
T 2xwt_C 109 FLGIFNTGLK 118 (239)
T ss_dssp EEEEEEECCC
T ss_pred EEeCCCCCCc
Confidence 7777766654
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=4.1e-16 Score=142.33 Aligned_cols=217 Identities=21% Similarity=0.223 Sum_probs=146.3
Q ss_pred EEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc-cccccccccccEEEecCC
Q 045968 46 LSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGSSLELLDISCT 124 (402)
Q Consensus 46 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~L~~L~L~~~ 124 (402)
++..+..+..+|... .++|++|++++| .+..++...|.++++|++|++++| .+..++ ..+..+. +|++|++++|
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~-~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLS-HLSTLILTGN 86 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC--CCCEECTTTTTTCT-TCCEEECTTC
T ss_pred EEecCCCccccCCCC-CCCccEEECCCC-cccccCHhHhccccCCcEEECCCC--cCCccCHHHccCCc-CCCEEECCCC
Confidence 445555666666532 257999999988 788877766889999999999999 888774 4677787 9999999999
Q ss_pred CCcccc-HhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCC
Q 045968 125 GITELP-EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYL 203 (402)
Q Consensus 125 ~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 203 (402)
.+..++ ..+..+++|++|++.+ +.++.++...+.++++|++|++.+|.+... .....+..+++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~l~~~~~~l~~L 151 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSF--------------KLPEYFSNLTNL 151 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCC--------------CCCGGGGGCTTC
T ss_pred ccCccChhhhcCCccccEEECCC-CCccccCchhcccCCCCCEEECcCCcccee--------------cCchhhccCCCC
Confidence 888776 4588899999999988 567776654488899999999988877521 112345566667
Q ss_pred ceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCcccccccc----EEecccccCcccCc-c
Q 045968 204 EVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLH----RVTMVLCHKLKDVT-F 278 (402)
Q Consensus 204 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~l~-~ 278 (402)
+.|+++++. ++.+..... . .+++|+ .|+++++ .++.++ .
T Consensus 152 ~~L~Ls~N~--------------------------l~~~~~~~~--------~-~l~~L~~l~l~L~ls~n-~l~~~~~~ 195 (276)
T 2z62_A 152 EHLDLSSNK--------------------------IQSIYCTDL--------R-VLHQMPLLNLSLDLSLN-PMNFIQPG 195 (276)
T ss_dssp CEEECCSSC--------------------------CCEECGGGG--------H-HHHTCTTCCEEEECCSS-CCCEECTT
T ss_pred CEEECCCCC--------------------------CCcCCHHHh--------h-hhhhccccceeeecCCC-cccccCcc
Confidence 766666442 222211000 0 233344 6777777 565553 3
Q ss_pred cccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968 279 LVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP 330 (402)
Q Consensus 279 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 330 (402)
.....+|++|++++|. ++.++. ..+..+++|+.|++++++
T Consensus 196 ~~~~~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 196 AFKEIRLKELALDTNQ-LKSVPD-----------GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SSCSCCEEEEECCSSC-CSCCCT-----------TTTTTCCSCCEEECCSSC
T ss_pred ccCCCcccEEECCCCc-eeecCH-----------hHhcccccccEEEccCCc
Confidence 3344578888888865 333321 245667788888887643
No 78
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=8.8e-17 Score=162.60 Aligned_cols=298 Identities=14% Similarity=0.075 Sum_probs=148.3
Q ss_pred CCccceEEEccCCccccc--CCCCC-CCc-cceEecccccccccc-chHHhccCCCCCEEEccCCCcccccc-----ccc
Q 045968 39 GWENVRRLSLMQNQIETV--SEVPT-CPH-LLTLFLDFNQELEMI-ADGFFQLMPSLKVLKMSNCGQGRLKL-----PVG 108 (402)
Q Consensus 39 ~~~~l~~L~l~~~~~~~~--~~~~~-~~~-L~~L~l~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~i~~l-----~~~ 108 (402)
.+++|+.|+++++.+... ..... ++. |++|++.+|..+... ....+..+++|++|++++| .+... +..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~--~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES--SFSEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC--EEECCCSHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc--cccCcchhHHHHH
Confidence 467788888887765431 11112 334 777777766433221 1222456777777777777 54322 112
Q ss_pred cccccccccEEEecCCCCc-----cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc------
Q 045968 109 MSVLGSSLELLDISCTGIT-----ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF------ 177 (402)
Q Consensus 109 ~~~l~~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~------ 177 (402)
...++ +|++|++++|.+. .++..+.++++|+.|++.+| .+..++. .+.++++|++|++........
T Consensus 188 ~~~~~-~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 188 AQHNT-SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVG-FFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHCC-CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHH-HHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HhcCC-CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHH-HHhhhhHHHhhcccccccccchHHHHH
Confidence 23344 6666666666554 23333455666666666663 3344443 244555555555542111000
Q ss_pred ---------------------cc------CCCcccccCC--cchhh-HhhhcCCCCceEEEEecCchhhHhhhhhhhhcc
Q 045968 178 ---------------------HE------APEDSVLFGG--GEVLI-QELLGLKYLEVLELSLGSYHALQILLSSNKLKS 227 (402)
Q Consensus 178 ---------------------~~------~~~~~~~~~~--~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 227 (402)
+. .....+++.. ....+ ..+..+++|+.|.+. .......+......++
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHCT
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhCC
Confidence 00 0000000000 11111 224556666666665 2222223333334455
Q ss_pred cceeeEecc----------c----------------eeeeEeccccccccCCCC--ccccccccEEeccc---ccCcccC
Q 045968 228 CIRSLCLDG----------F----------------ELEELKIDYTEIVRKRRE--PFVFRNLHRVTMVL---CHKLKDV 276 (402)
Q Consensus 228 ~L~~L~l~~----------~----------------~L~~L~i~~~~~~~~~~~--~~~~~~L~~L~l~~---~~~l~~l 276 (402)
+|+.|++++ | +|++|.+..+........ ...+++|++|++++ |..+++.
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 666666662 2 566666633322111000 10366777777763 3355543
Q ss_pred c-------ccccCCCCCEEeecCCcc-hHHHhhcCCCCCCccccCCCCCCCccceeecCcccccc--ccccCccCCCCcc
Q 045968 277 T-------FLVFAPNLKSLDLDGCDA-MEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE--SIYWKPLPFTRLK 346 (402)
Q Consensus 277 ~-------~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~i~~~~~~~~~L~ 346 (402)
+ .+..+++|+.|++++|.+ +.+... ......+++|+.|++++|. +. .++.....+++|+
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~----------~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL----------SYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH----------HHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCC
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH----------HHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccC
Confidence 1 134578888888876653 222211 0122347889999998765 42 2333345679999
Q ss_pred EEEecCCC
Q 045968 347 EMAVLGCD 354 (402)
Q Consensus 347 ~L~i~~c~ 354 (402)
+|++++|+
T Consensus 492 ~L~l~~n~ 499 (592)
T 3ogk_B 492 KLEMRGCC 499 (592)
T ss_dssp EEEEESCC
T ss_pred eeeccCCC
Confidence 99999886
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=6.9e-16 Score=140.47 Aligned_cols=170 Identities=22% Similarity=0.355 Sum_probs=139.0
Q ss_pred CcEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968 21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98 (402)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 98 (402)
...+......+..+|... ..+++.|++++|.+..++. ...+++|++|++++| .+..++..+|..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC
Confidence 356777777888887532 2689999999999998875 478999999999998 888888887899999999999999
Q ss_pred Ccccccccc-ccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccc
Q 045968 99 GQGRLKLPV-GMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR 176 (402)
Q Consensus 99 ~~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 176 (402)
.+..++. .+..+. +|++|++++|.+..++.. +..+++|++|++++ +.++.++...+..+++|++|++.+|.+..
T Consensus 96 --~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 96 --KLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp --CCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred --cCCcCCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcE
Confidence 8988854 567788 999999999999988765 78999999999999 58888888768999999999999988753
Q ss_pred cccCCCcccccCCcchhhHhhhcCCCCceEEEEec
Q 045968 177 FHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLG 211 (402)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 211 (402)
. ....+..+++|+.|+++.+
T Consensus 172 ~---------------~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 172 V---------------PEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp C---------------CTTTTTTCTTCCEEECCSS
T ss_pred e---------------ChhHhccCCCcCEEECCCC
Confidence 2 1223555667777776644
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=7.6e-17 Score=151.38 Aligned_cols=221 Identities=17% Similarity=0.103 Sum_probs=140.2
Q ss_pred cceEEEccCCcccccCCCCCC--CccceEeccccccccccchHHhccCCCCCEEEccCCCccccc--ccccccccccccc
Q 045968 42 NVRRLSLMQNQIETVSEVPTC--PHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLK--LPVGMSVLGSSLE 117 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~--l~~~~~~l~~~L~ 117 (402)
.++.++++++.+.. .....+ ++++.+.+.+| .+...+.. +..+++|++|++++| .+.. ++..+..++ +|+
T Consensus 48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~--~l~~~~~~~~~~~~~-~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNS--VIEVSTLHGILSQCS-KLQ 121 (336)
T ss_dssp TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTC--EECHHHHHHHHTTBC-CCS
T ss_pred hheeeccccccCCH-HHHHhhhhccceEEEcCCc-cccccchh-hccCCCCCEEEccCC--CcCHHHHHHHHhhCC-CCC
Confidence 46677777765542 111233 67788888877 55554444 556788888888888 6653 556666676 888
Q ss_pred EEEecCCCCc-cccHhhhcCCCCcEEEccCCCCccc--cchhhhhCCCCCcEEEeeee-cccccccCCCcccccCCcchh
Q 045968 118 LLDISCTGIT-ELPEELKKLVNLKCLNLRWTGALIR--IPRQLISKFSRLRVLRMFAI-GYDRFHEAPEDSVLFGGGEVL 193 (402)
Q Consensus 118 ~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~ 193 (402)
+|++++|.+. ..+..+..+++|++|++++|..++. ++. .+.++++|++|++.+| .+. ....
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~--------------~~~~ 186 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFT--------------EKHV 186 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCC--------------HHHH
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcC--------------hHHH
Confidence 8888888776 4556677788888888888655654 444 3677888888888887 553 2223
Q ss_pred hHhhhcCC-CCceEEEEecCc-hhhHhhhhhhhhcccceeeEeccceeeeEecccccc-c-cCCCCccccccccEEeccc
Q 045968 194 IQELLGLK-YLEVLELSLGSY-HALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEI-V-RKRREPFVFRNLHRVTMVL 269 (402)
Q Consensus 194 ~~~l~~l~-~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~-~-~~~~~~~~~~~L~~L~l~~ 269 (402)
...+..++ +|+.|+++++.. -....++.....+++ |++|+++++.. . ..+..-..+++|+.|++++
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~----------L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN----------LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT----------CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC----------CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 34466777 888888876531 111222333333344 44444444431 1 1111111689999999999
Q ss_pred ccCccc--CcccccCCCCCEEeecCC
Q 045968 270 CHKLKD--VTFLVFAPNLKSLDLDGC 293 (402)
Q Consensus 270 ~~~l~~--l~~~~~l~~L~~L~l~~c 293 (402)
|..+++ +..+..+++|++|++++|
T Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 257 CYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 965544 235778999999999998
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=8.5e-16 Score=140.02 Aligned_cols=196 Identities=17% Similarity=0.187 Sum_probs=134.3
Q ss_pred CCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccc-cccccc
Q 045968 35 PDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV-GMSVLG 113 (402)
Q Consensus 35 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~ 113 (402)
.....+++++.|++.++.+..++....+++|++|++++| .+..++. +..+++|++|++++| .++.++. .+..+.
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n--~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDISA--LKELTNLTYLILTGN--QLQSLPNGVFDKLT 109 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECTTS--CCCCCCTTTTTTCT
T ss_pred cccccccceeeeeeCCCCcccccccccCCCCcEEECCCC-CCCCchh--hcCCCCCCEEECCCC--ccCccChhHhcCCc
Confidence 344556778888888888887777778888888888887 6666542 778888888888888 7777643 456677
Q ss_pred ccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcch
Q 045968 114 SSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEV 192 (402)
Q Consensus 114 ~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (402)
+|++|++++|.+..++.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+...
T Consensus 110 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------- 172 (272)
T 3rfs_A 110 -NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYNQLQSL--------------- 172 (272)
T ss_dssp -TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------
T ss_pred -CCCEEECCCCcCCccCHHHhccCCCCCEEECCC-CccCccCHHHhccCccCCEEECCCCCcCcc---------------
Confidence 888888888888777655 67788888888888 467777765567888888888888876431
Q ss_pred hhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccc
Q 045968 193 LIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLC 270 (402)
Q Consensus 193 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~ 270 (402)
....+..+++|+.|+++.+....+.. .....++ +|++|++.++.... .+++|+.+.+..+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~----------~L~~L~l~~N~~~~------~~~~l~~l~~~~n 232 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLT----------SLQYIWLHDNPWDC------TCPGIRYLSEWIN 232 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCT----------TCCEEECCSSCBCC------CTTTTHHHHHHHH
T ss_pred CHHHhcCCccCCEEECCCCcCCccCH--HHHhCCc----------CCCEEEccCCCccc------cCcHHHHHHHHHH
Confidence 22235667788888888776665432 1112223 44455555543311 4666777766655
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=2e-16 Score=144.15 Aligned_cols=173 Identities=23% Similarity=0.345 Sum_probs=140.5
Q ss_pred cCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 20 KRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
+...+......+..++.+..+++|+.|++++|.+..++....+++|++|++++| .+..+++..+..+++|++|++++|
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n- 119 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN- 119 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-
Confidence 345666777777778888888999999999999888877788999999999988 788888777889999999999999
Q ss_pred cccccccc-ccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968 100 QGRLKLPV-GMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF 177 (402)
Q Consensus 100 ~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 177 (402)
.++.++. .+..+. +|++|++++|.+..++.. +..+++|+.|++++ +.++.++...+..+++|++|++.+|.+...
T Consensus 120 -~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 120 -QLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp -CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred -cCCccCHHHhccCC-CCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 8887754 467777 999999999988888765 57889999999998 477787776678899999999998887532
Q ss_pred ccCCCcccccCCcchhhHhhhcCCCCceEEEEecC
Q 045968 178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGS 212 (402)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 212 (402)
....+..+++|+.|++.++.
T Consensus 197 ---------------~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 197 ---------------PDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSSC
T ss_pred ---------------CHHHHhCCcCCCEEEccCCC
Confidence 22346678889999988654
No 83
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=6e-16 Score=156.46 Aligned_cols=85 Identities=14% Similarity=0.251 Sum_probs=48.9
Q ss_pred ccccccEEecccccCccc--Cccccc-CCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccc
Q 045968 258 VFRNLHRVTMVLCHKLKD--VTFLVF-APNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLES 334 (402)
Q Consensus 258 ~~~~L~~L~l~~~~~l~~--l~~~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 334 (402)
.+++|+.|++++ .+++ +..+.. +++|+.|++++|..-..... .....+++|+.|++++|+.-..
T Consensus 430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSCCHH
T ss_pred hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCCcHH
Confidence 355666666644 2333 222332 67777777777653221111 1225588899999988875211
Q ss_pred -cccCccCCCCccEEEecCCCC
Q 045968 335 -IYWKPLPFTRLKEMAVLGCDQ 355 (402)
Q Consensus 335 -i~~~~~~~~~L~~L~i~~c~~ 355 (402)
+......+++|+.|++++|+.
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHhCCCCCEEeeeCCCC
Confidence 122334578999999988865
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=1.2e-15 Score=140.42 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=59.6
Q ss_pred EccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCC
Q 045968 47 SLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGI 126 (402)
Q Consensus 47 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l 126 (402)
.+..+.+.++.....+++|+.|.+++| .+..++. +..+++|++|++++| .++.++. +..+. +|++|++++|.+
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n--~l~~~~~-l~~l~-~L~~L~l~~n~l 102 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGN--KLTDIKP-LANLK-NLGWLFLDENKV 102 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS--CCCCCGG-GTTCT-TCCEEECCSSCC
T ss_pred HhcCCCcccccchhhcCcccEEEccCC-CcccChh--HhcCCCCCEEEccCC--ccCCCcc-cccCC-CCCEEECCCCcC
Confidence 333333333333344555555555555 4444433 455555555555555 5555433 44454 555555555555
Q ss_pred ccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 127 TELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 127 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
..++. +..+++|++|++++ +.++.++. +..+++|++|++.+|.+
T Consensus 103 ~~~~~-l~~l~~L~~L~L~~-n~i~~~~~--l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 103 KDLSS-LKDLKKLKSLSLEH-NGISDING--LVHLPQLESLYLGNNKI 146 (291)
T ss_dssp CCGGG-GTTCTTCCEEECTT-SCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred CCChh-hccCCCCCEEECCC-CcCCCChh--hcCCCCCCEEEccCCcC
Confidence 55432 55555555555555 34444432 55555555555555544
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=3.4e-16 Score=150.02 Aligned_cols=234 Identities=15% Similarity=0.088 Sum_probs=111.7
Q ss_pred CCCCccceEeccccccccccchH----HhccCCCCCEEEccCCCccccc----ccccc-------ccccccccEEEecCC
Q 045968 60 PTCPHLLTLFLDFNQELEMIADG----FFQLMPSLKVLKMSNCGQGRLK----LPVGM-------SVLGSSLELLDISCT 124 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~~i~~----l~~~~-------~~l~~~L~~L~L~~~ 124 (402)
..+++|++|++++| .+...... .+..+++|++|++++| .+.. +|..+ ..+. +|++|++++|
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~--~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n 104 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDI--FTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDN 104 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSC--CTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSC
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCccc--ccCccccchhHHHHHHHHHHhhCC-cccEEECCCC
Confidence 34555666666655 44332211 1445666666666665 3322 12222 3444 6666666666
Q ss_pred CCcc-----ccHhhhcCCCCcEEEccCCCCccccchhh----hhCC---------CCCcEEEeeeecccccccCCCcccc
Q 045968 125 GITE-----LPEELKKLVNLKCLNLRWTGALIRIPRQL----ISKF---------SRLRVLRMFAIGYDRFHEAPEDSVL 186 (402)
Q Consensus 125 ~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~ 186 (402)
.+.. +|..+..+++|++|++++| .++..+... +..+ ++|++|++.+|.+...
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~--------- 174 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG--------- 174 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---------
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH---------
Confidence 5553 4445566666666666663 333221111 2222 5666666666655310
Q ss_pred cCCcch-hhHhhhcCCCCceEEEEecCchhh--Hhhhh-hhhhcccceeeEeccceeeeEeccccccccCCC--Cccccc
Q 045968 187 FGGGEV-LIQELLGLKYLEVLELSLGSYHAL--QILLS-SNKLKSCIRSLCLDGFELEELKIDYTEIVRKRR--EPFVFR 260 (402)
Q Consensus 187 ~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~-~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~--~~~~~~ 260 (402)
... ....+..+++|+.|.++.+..... ..+.. .....++|+.|++++|.+..-. ...++ .. .++
T Consensus 175 ---~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g------~~~l~~~l~-~~~ 244 (386)
T 2ca6_A 175 ---SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG------SSALAIALK-SWP 244 (386)
T ss_dssp ---GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH------HHHHHHHGG-GCT
T ss_pred ---HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH------HHHHHHHHc-cCC
Confidence 001 112345556666666665443311 11111 2222233333333322211000 00011 01 567
Q ss_pred cccEEecccccCcccC------ccc--ccCCCCCEEeecCCcchHH----HhhcCCCCCCccccCCC-CCCCccceeecC
Q 045968 261 NLHRVTMVLCHKLKDV------TFL--VFAPNLKSLDLDGCDAMEE----IISVGKFAETPEMMGHI-SPFENLQRLNLE 327 (402)
Q Consensus 261 ~L~~L~l~~~~~l~~l------~~~--~~l~~L~~L~l~~c~~l~~----~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~ 327 (402)
+|++|++++| .++.. ..+ ..+++|++|++++|..-.. ++. .+ ..+++|+.|+++
T Consensus 245 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~------------~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 245 NLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT------------VIDEKMPDLLFLELN 311 (386)
T ss_dssp TCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH------------HHHHHCTTCCEEECT
T ss_pred CcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH------------HHHhcCCCceEEEcc
Confidence 7888888777 45553 233 2377888888888665431 321 22 456788888888
Q ss_pred ccc
Q 045968 328 DLP 330 (402)
Q Consensus 328 ~c~ 330 (402)
+|+
T Consensus 312 ~N~ 314 (386)
T 2ca6_A 312 GNR 314 (386)
T ss_dssp TSB
T ss_pred CCc
Confidence 764
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=4.7e-15 Score=140.17 Aligned_cols=228 Identities=14% Similarity=0.137 Sum_probs=125.8
Q ss_pred cccccchHHhccCCCCCEEEccCCCcccccccc-ccccccccccEEEecCCCCc-cccHh-hhcCCCCcEEEccCCCCcc
Q 045968 75 ELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV-GMSVLGSSLELLDISCTGIT-ELPEE-LKKLVNLKCLNLRWTGALI 151 (402)
Q Consensus 75 ~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~~L~~L~L~~~~l~-~lp~~-i~~l~~L~~L~l~~~~~~~ 151 (402)
++..+|.. + .+++++|++++| .++.+|. .|..+. +|++|+|++|.+. .+|.. +.++++|+++.+..++.++
T Consensus 20 ~Lt~iP~~-l--~~~l~~L~Ls~N--~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 20 KVTEIPSD-L--PRNAIELRFVLT--KLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp TCCSCCTT-C--CTTCSEEEEESC--CCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred CCCccCcC-c--CCCCCEEEccCC--cCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 44555543 2 245666666666 5666543 355555 6666666666543 34433 4555565554444445666
Q ss_pred ccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhh--hhhcccc
Q 045968 152 RIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSS--NKLKSCI 229 (402)
Q Consensus 152 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L 229 (402)
.++.+++.++++|++|++.+|.+...+ . .......++..+.+..+ ..+..++.. ......
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~--------------~-~~~~~~~~l~~l~l~~~--~~i~~l~~~~f~~~~~~- 155 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLP--------------D-VHKIHSLQKVLLDIQDN--INIHTIERNSFVGLSFE- 155 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCC--------------C-CTTCCBSSCEEEEEESC--TTCCEECTTSSTTSBSS-
T ss_pred ccCchhhhhccccccccccccccccCC--------------c-hhhcccchhhhhhhccc--cccccccccchhhcchh-
Confidence 665544666666666666666554210 0 01112223334444321 111111110 111122
Q ss_pred eeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCC
Q 045968 230 RSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAE 307 (402)
Q Consensus 230 ~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 307 (402)
++.|+++++......+..+...+|+.|.+.++..++.++ .+..+++|++|++++|. ++.++
T Consensus 156 ---------l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp------- 218 (350)
T 4ay9_X 156 ---------SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLP------- 218 (350)
T ss_dssp ---------CEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCC-------
T ss_pred ---------hhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccC-------
Confidence 333444444333333332256688889988766788876 46788999999999864 44442
Q ss_pred CccccCCCCCCCccceeecCccccccccccCccCCCCccEEEec
Q 045968 308 TPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVL 351 (402)
Q Consensus 308 ~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~ 351 (402)
...|.+|+.|.+.++.+++.++. ...+++|+.+++.
T Consensus 219 -------~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 219 -------SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp -------SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred -------hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 24577888888888888888875 4557889998884
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=4.5e-15 Score=133.52 Aligned_cols=171 Identities=23% Similarity=0.303 Sum_probs=136.3
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+...+..+..+|.... ++++.|++++|.+..++. ...+++|++|++++| .+..+++..|..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n- 93 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN- 93 (251)
T ss_dssp TEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred eEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-
Confidence 456667777777775332 689999999999888765 378899999999988 777777776889999999999999
Q ss_pred ccccccc-cccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968 100 QGRLKLP-VGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF 177 (402)
Q Consensus 100 ~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 177 (402)
.++.++ ..+..+. +|++|++++|.+..+|.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+...
T Consensus 94 -~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 94 -QLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp -CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred -cccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 888775 4567777 999999999999888776 57899999999998 588888876688999999999999887532
Q ss_pred ccCCCcccccCCcchhhHhhhcCCCCceEEEEecCc
Q 045968 178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSY 213 (402)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 213 (402)
....+..+++|+.|.++++..
T Consensus 171 ---------------~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 171 ---------------PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSCCB
T ss_pred ---------------CHHHHhCCCCCCEEEeeCCce
Confidence 223466778888888886654
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=6.3e-16 Score=156.34 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=81.7
Q ss_pred CCccceEEEccCCccccc--CCC-CCCCccceEecccccccccc-chHHhccCCCCCEEEccCCCcccccc-----cccc
Q 045968 39 GWENVRRLSLMQNQIETV--SEV-PTCPHLLTLFLDFNQELEMI-ADGFFQLMPSLKVLKMSNCGQGRLKL-----PVGM 109 (402)
Q Consensus 39 ~~~~l~~L~l~~~~~~~~--~~~-~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~i~~l-----~~~~ 109 (402)
.+++|+.|+++++.+... ... ..+++|++|++.+|..+... ...++..+++|++|++++| .++.. +...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~--~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES--DVDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC--EEECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC--ccCCcchHHHHHHh
Confidence 456788888888766542 112 25788999998888555542 2333567889999999888 65542 2222
Q ss_pred ccccccccEEEecCCC--Cc--cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeee
Q 045968 110 SVLGSSLELLDISCTG--IT--ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFA 171 (402)
Q Consensus 110 ~~l~~~L~~L~L~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 171 (402)
..+. +|++|++++|. +. .++..+.++++|++|++.+|..++.++.. +.++++|++|++..
T Consensus 181 ~~~~-~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 181 DTYT-SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGG 244 (594)
T ss_dssp TTCC-CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSB
T ss_pred hcCC-cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEccccc
Confidence 2445 88888888875 22 22223456788888888887555555442 55666666666443
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.5e-15 Score=141.22 Aligned_cols=223 Identities=19% Similarity=0.188 Sum_probs=162.8
Q ss_pred cceEEEccCCccccc--CCCC--------CCCccceEecccccccc-ccchHHh-ccCCCCCEEEccCCCcccccccccc
Q 045968 42 NVRRLSLMQNQIETV--SEVP--------TCPHLLTLFLDFNQELE-MIADGFF-QLMPSLKVLKMSNCGQGRLKLPVGM 109 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~--~~~~--------~~~~L~~L~l~~~~~l~-~~~~~~~-~~l~~L~~L~l~~~~~~i~~l~~~~ 109 (402)
.++.|++++|.+... +... .+++|++|++++| .+. .+|..++ ..+++|++|++++| .++..|..+
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~ 140 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV--SWATRDAWL 140 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC--BCSSSSSHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC--CCcchhHHH
Confidence 488899999988653 3222 5899999999999 665 5666533 88999999999999 888878777
Q ss_pred ccc-----cccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCccc--cchhhh--hCCCCCcEEEeeeeccccccc
Q 045968 110 SVL-----GSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALIR--IPRQLI--SKFSRLRVLRMFAIGYDRFHE 179 (402)
Q Consensus 110 ~~l-----~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~--~~~~~l--~~l~~L~~L~l~~~~~~~~~~ 179 (402)
+.+ . +|++|++++|.+..++ ..+..+++|++|++++|..... ++.. + ..+++|++|++.+|.+...
T Consensus 141 ~~l~~~~~~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L~~N~l~~~-- 216 (312)
T 1wwl_A 141 AELQQWLKP-GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRNAGMETP-- 216 (312)
T ss_dssp HHHHTTCCT-TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEECTTSCCCCH--
T ss_pred HHHHHhhcC-CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEECCCCcCcch--
Confidence 776 5 9999999999999887 5689999999999999643333 2332 3 7899999999999988521
Q ss_pred CCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCcccc
Q 045968 180 APEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVF 259 (402)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~ 259 (402)
.......+..+++|+.|+++.+......... .....+ +|++|+++++..... |.. .+
T Consensus 217 ----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~----------~L~~L~Ls~N~l~~i-p~~-~~ 273 (312)
T 1wwl_A 217 ----------SGVCSALAAARVQLQGLDLSHNSLRDAAGAP-SCDWPS----------QLNSLNLSFTGLKQV-PKG-LP 273 (312)
T ss_dssp ----------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-CCCCCT----------TCCEEECTTSCCSSC-CSS-CC
T ss_pred ----------HHHHHHHHhcCCCCCEEECCCCcCCcccchh-hhhhcC----------CCCEEECCCCccChh-hhh-cc
Confidence 1112233457899999999876544422111 111123 455566666555433 333 24
Q ss_pred ccccEEecccccCcccCcccccCCCCCEEeecCCcc
Q 045968 260 RNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDA 295 (402)
Q Consensus 260 ~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~ 295 (402)
++|+.|+++++ .++.++.+..+++|++|++++|+.
T Consensus 274 ~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCTT
T ss_pred CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCCC
Confidence 89999999998 788888888999999999999754
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=4.4e-16 Score=149.21 Aligned_cols=247 Identities=15% Similarity=0.085 Sum_probs=165.2
Q ss_pred cccccchHHhccCCCCCEEEccCCCcccccc-----ccccccccccccEEEecCCCCc----cccHhh-------hcCCC
Q 045968 75 ELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-----PVGMSVLGSSLELLDISCTGIT----ELPEEL-------KKLVN 138 (402)
Q Consensus 75 ~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-----~~~~~~l~~~L~~L~L~~~~l~----~lp~~i-------~~l~~ 138 (402)
.+..++.. +..+++|++|++++| .+... +..+..+. +|++|++++|.+. .+|..+ ..+++
T Consensus 20 ~~~~l~~~-l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 20 DEKSVFAV-LLEDDSVKEIVLSGN--TIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp HHHTTSHH-HHHCSCCCEEECTTS--EECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHH-HhcCCCccEEECCCC--CCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 44555555 888999999999999 77743 33466777 9999999998655 344444 68899
Q ss_pred CcEEEccCCCCccc-----cchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcch-hhHhhhcC---------CCC
Q 045968 139 LKCLNLRWTGALIR-----IPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEV-LIQELLGL---------KYL 203 (402)
Q Consensus 139 L~~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l---------~~L 203 (402)
|++|++++| .++. ++.. +..+++|++|++.+|.+... ... ....+..+ ++|
T Consensus 96 L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~------------~~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 96 LHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQ------------AGAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp CCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHH------------HHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred ccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHH------------HHHHHHHHHHHHhhhhhcccCCCC
Confidence 999999995 5555 5544 88999999999999987421 111 12224444 899
Q ss_pred ceEEEEecCch--hhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCC-CccccccccEEecccccCcc-----c
Q 045968 204 EVLELSLGSYH--ALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRR-EPFVFRNLHRVTMVLCHKLK-----D 275 (402)
Q Consensus 204 ~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~-----~ 275 (402)
+.|.++++... .+..+.......++|+.|.+++|.+..-.+. ...+ ....+++|+.|++++| .++ .
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~-----~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~ 235 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE-----HLLLEGLAYCQELKVLDLQDN-TFTHLGSSA 235 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHH-----HHHHTTGGGCTTCCEEECCSS-CCHHHHHHH
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHH-----HHHHHHhhcCCCccEEECcCC-CCCcHHHHH
Confidence 99999977654 3444444444555666666555544311100 0111 1116899999999998 564 2
Q ss_pred Cc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCC--CCCCccceeecCccccccc-----cccCc-cCCCCcc
Q 045968 276 VT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHI--SPFENLQRLNLEDLPNLES-----IYWKP-LPFTRLK 346 (402)
Q Consensus 276 l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~c~~l~~-----i~~~~-~~~~~L~ 346 (402)
++ .+..+++|++|++++|..-..... .....+ +.+++|+.|++++|. +.. ++... ..+++|+
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~--------~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAA--------AVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHH--------HHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHH--------HHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCce
Confidence 33 567899999999999874332110 001123 448999999999975 433 55443 4479999
Q ss_pred EEEecCCC
Q 045968 347 EMAVLGCD 354 (402)
Q Consensus 347 ~L~i~~c~ 354 (402)
.|++++|+
T Consensus 307 ~L~l~~N~ 314 (386)
T 2ca6_A 307 FLELNGNR 314 (386)
T ss_dssp EEECTTSB
T ss_pred EEEccCCc
Confidence 99998875
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=3.6e-15 Score=140.98 Aligned_cols=237 Identities=21% Similarity=0.180 Sum_probs=160.2
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEE-EccCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVL-KMSNC 98 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L-~l~~~ 98 (402)
..+...+.++.++|.-- .++++.|++++|.++.++.. ..+++|++|++++|...+.++..+|.+++++..+ .+.+|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45666777888887522 36899999999999998753 7899999999999844566777778889887764 45556
Q ss_pred Ccccccc-ccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCC-CCcEEEeeeeccc
Q 045968 99 GQGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFS-RLRVLRMFAIGYD 175 (402)
Q Consensus 99 ~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~ 175 (402)
.++.+ |..|..+. +|++|++++|++..+|.. .....++..+++.+++.+..++...+..+. .+++|++.++.+.
T Consensus 91 --~l~~l~~~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 91 --NLLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp --TCCEECTTSBCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred --cccccCchhhhhcc-ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 78887 56677788 999999999999887654 456678888999887888888876566664 6888999888775
Q ss_pred ccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhh-hhhcccceeeEeccceeeeEeccccccccCCC
Q 045968 176 RFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSS-NKLKSCIRSLCLDGFELEELKIDYTEIVRKRR 254 (402)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~ 254 (402)
... .......+|+.+.+.. ...+..++.. ....+ +|++|+++++..... |
T Consensus 168 ~i~----------------~~~f~~~~L~~l~l~~--~n~l~~i~~~~f~~l~----------~L~~LdLs~N~l~~l-p 218 (350)
T 4ay9_X 168 EIH----------------NSAFNGTQLDELNLSD--NNNLEELPNDVFHGAS----------GPVILDISRTRIHSL-P 218 (350)
T ss_dssp EEC----------------TTSSTTEEEEEEECTT--CTTCCCCCTTTTTTEE----------CCSEEECTTSCCCCC-C
T ss_pred CCC----------------hhhccccchhHHhhcc--CCcccCCCHHHhccCc----------ccchhhcCCCCcCcc-C
Confidence 321 1112233455555542 1222222211 12222 445555555544322 2
Q ss_pred CccccccccEEecccccCcccCcccccCCCCCEEeecC
Q 045968 255 EPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDG 292 (402)
Q Consensus 255 ~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~ 292 (402)
.. .+.+|++|.+.++..++.+|.+..+++|+.+++.+
T Consensus 219 ~~-~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 219 SY-GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp SS-SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hh-hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 23 47777777777776777777777777777777765
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=6.3e-15 Score=135.52 Aligned_cols=169 Identities=26% Similarity=0.250 Sum_probs=138.4
Q ss_pred CcEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968 21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98 (402)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 98 (402)
...+...+.++..+|... .++++.|++++|.+..++. ...+++|++|++++| .+..++. ...+++|++|++++|
T Consensus 12 l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHN 87 (290)
T ss_dssp CCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSS
T ss_pred ccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC--CCCCCcCCEEECCCC
Confidence 455666777788886432 3689999999999988753 488999999999998 7877776 478999999999999
Q ss_pred CccccccccccccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968 99 GQGRLKLPVGMSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF 177 (402)
Q Consensus 99 ~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 177 (402)
.++.+|..+..+. +|++|++++|.+..+|. .+..+++|++|++++ +.++.++..++..+++|++|++.+|.+...
T Consensus 88 --~l~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 88 --QLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp --CCSSCCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred --cCCcCchhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 8999998888888 99999999999998875 488999999999999 688888887788999999999999988532
Q ss_pred ccCCCcccccCCcchhhHhhhcCCCCceEEEEecC
Q 045968 178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGS 212 (402)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 212 (402)
....+..+++|+.|.++.+.
T Consensus 164 ---------------~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 164 ---------------PAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSSC
T ss_pred ---------------CHHHhcCcCCCCEEECCCCc
Confidence 11234567777777776543
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=5.2e-15 Score=128.09 Aligned_cols=150 Identities=15% Similarity=0.201 Sum_probs=128.6
Q ss_pred cCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccc-cccccccccccc
Q 045968 38 KGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLK-LPVGMSVLGSSL 116 (402)
Q Consensus 38 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~-l~~~~~~l~~~L 116 (402)
..+++++.|+++++.+..++....+++|++|++++| .+..++. +..+++|++|++++| .++. .+..++.+. +|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n--~l~~~~~~~l~~l~-~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGK--DVTSDKIPNLSGLT-SL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECT--TCBGGGSCCCTTCT-TC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECC--ccCcccChhhcCCC-CC
Confidence 556789999999999999888889999999999999 7777653 899999999999999 8875 577788888 99
Q ss_pred cEEEecCCCCcc-ccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhH
Q 045968 117 ELLDISCTGITE-LPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQ 195 (402)
Q Consensus 117 ~~L~L~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (402)
++|++++|.+.. .+..+..+++|++|++++|..++.++. +.++++|++|++.+|.+.. +.
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-----------------~~ 175 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-----------------YR 175 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-----------------CT
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-----------------hH
Confidence 999999999985 567799999999999999655888874 8999999999999998852 22
Q ss_pred hhhcCCCCceEEEEecC
Q 045968 196 ELLGLKYLEVLELSLGS 212 (402)
Q Consensus 196 ~l~~l~~L~~L~l~~~~ 212 (402)
.+..+++|+.|.++++.
T Consensus 176 ~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TGGGCSSCCEEEECBC-
T ss_pred HhccCCCCCEEEeeCcc
Confidence 57788999999998654
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=1.4e-15 Score=153.48 Aligned_cols=124 Identities=21% Similarity=0.300 Sum_probs=54.1
Q ss_pred CccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEE
Q 045968 40 WENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELL 119 (402)
Q Consensus 40 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L 119 (402)
+..|+.|++.++.+..++.+..+++|+.|++++| .+..+++ +..+++|++|++++| .+..++ .+..+. +|++|
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N--~l~~l~-~l~~l~-~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDEN--KIKDLS-SLKDLK-KLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSS--CCCCCT-TSTTCT-TCCEE
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCC--CCCCCh-hhccCC-CCCEE
Confidence 3444444444444444444444444444444444 3333333 444444444444444 444433 233344 44444
Q ss_pred EecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 120 DISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 120 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
++++|.+..++ .+..+++|+.|+|++ +.++.++. +..+++|++|++.+|.+
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GGSCTTCSEEECCSSCC
T ss_pred EecCCCCCCCc-cccCCCccCEEECCC-CccCCchh--hcccCCCCEEECcCCcC
Confidence 44444444432 244444444444444 23333321 44444444444444433
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=2.9e-14 Score=131.21 Aligned_cols=178 Identities=22% Similarity=0.243 Sum_probs=138.2
Q ss_pred ccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccccc
Q 045968 32 KEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSV 111 (402)
Q Consensus 32 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~ 111 (402)
..+.....+++++.|+++++.+..++....+++|++|++++| .+..+++ +..+++|++|++++| .++.++. +..
T Consensus 37 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n--~l~~~~~-l~~ 110 (291)
T 1h6t_A 37 TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN--KVKDLSS-LKD 110 (291)
T ss_dssp TSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS--CCCCGGG-GTT
T ss_pred ccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC--cCCCChh-hcc
Confidence 333445567789999999999888888888999999999988 7777766 888999999999999 7887654 777
Q ss_pred ccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcc
Q 045968 112 LGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGE 191 (402)
Q Consensus 112 l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 191 (402)
+. +|++|++++|.+..+ ..+..+++|+.|++++ +.++.++. +..+++|++|++.+|.+.. .
T Consensus 111 l~-~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~~--------------~ 171 (291)
T 1h6t_A 111 LK-KLKSLSLEHNGISDI-NGLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISD--------------I 171 (291)
T ss_dssp CT-TCCEEECTTSCCCCC-GGGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCC--------------C
T ss_pred CC-CCCEEECCCCcCCCC-hhhcCCCCCCEEEccC-CcCCcchh--hccCCCCCEEEccCCcccc--------------c
Confidence 77 999999999988887 4678889999999998 57777743 8889999999999888753 1
Q ss_pred hhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeee
Q 045968 192 VLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEE 241 (402)
Q Consensus 192 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~ 241 (402)
..+..+++|+.|.++.+....++.+ ...++|+.|++++|.+..
T Consensus 172 ---~~l~~l~~L~~L~L~~N~i~~l~~l----~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 172 ---VPLAGLTKLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ---GGGTTCTTCCEEECCSSCCCBCGGG----TTCTTCSEEEEEEEEEEC
T ss_pred ---hhhcCCCccCEEECCCCcCCCChhh----ccCCCCCEEECcCCcccC
Confidence 1277788899999988877776432 334566666666665443
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=1.3e-14 Score=130.49 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=122.1
Q ss_pred cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc-cccccccccccEEE
Q 045968 42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGSSLELLD 120 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~L~~L~ 120 (402)
..+.++++++.++.+|.... ++++.|++++| .+..+++..|.++++|++|++++| .++.++ ..+..+. +|++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~-~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYN--QLQTLSAGVFDDLT-ELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCT-TCCEEE
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCC--cCCccCHhHhccCC-cCCEEE
Confidence 56789999999998886533 78999999998 788877766999999999999999 888774 5578888 999999
Q ss_pred ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968 121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG 199 (402)
Q Consensus 121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (402)
+++|.+..++.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+... ....+..
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~~~~ 153 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSI---------------PAGAFDK 153 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTT
T ss_pred CCCCcccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCCcCCcc---------------CHHHcCc
Confidence 999999988755 68899999999999 688888887678999999999999987532 1223556
Q ss_pred CCCCceEEEEec
Q 045968 200 LKYLEVLELSLG 211 (402)
Q Consensus 200 l~~L~~L~l~~~ 211 (402)
+++|+.|+++.+
T Consensus 154 l~~L~~L~L~~N 165 (251)
T 3m19_A 154 LTNLQTLSLSTN 165 (251)
T ss_dssp CTTCCEEECCSS
T ss_pred CcCCCEEECCCC
Confidence 677777777654
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=1.2e-14 Score=138.08 Aligned_cols=62 Identities=10% Similarity=0.051 Sum_probs=35.0
Q ss_pred ccccEEecccccCcccCc------ccccCCCCCEEeecCCc---chHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968 260 RNLHRVTMVLCHKLKDVT------FLVFAPNLKSLDLDGCD---AMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP 330 (402)
Q Consensus 260 ~~L~~L~l~~~~~l~~l~------~~~~l~~L~~L~l~~c~---~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 330 (402)
++|+.|++++| .+++.+ .+..+++|++|++++|. .-..... .....+..+++|+.|+++++.
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~--------~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK--------ALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH--------HHHTTSTTCCEEEEECTTSCB
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH--------HHHHHhccCCceEEEecCCCc
Confidence 46777777776 565542 23456777777777765 1110000 111245567777777777754
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=8.9e-15 Score=135.85 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=106.9
Q ss_pred ccceEEEccCCcccc-----cCCCCCCCccceEeccccccccc-cchHHh-ccCCCCCEEEccCCCcccccc-c----cc
Q 045968 41 ENVRRLSLMQNQIET-----VSEVPTCPHLLTLFLDFNQELEM-IADGFF-QLMPSLKVLKMSNCGQGRLKL-P----VG 108 (402)
Q Consensus 41 ~~l~~L~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~-~~l~~L~~L~l~~~~~~i~~l-~----~~ 108 (402)
..++.+.+.+..+.. +.....+++|++|++++| .+.. .+..++ ..+++|++|++++| .+... + ..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n--~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNV--SWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESC--CCSSTTSSHHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecc--cccchhhhhHHHH
Confidence 457888888776543 122234577999999998 5554 444422 88999999999999 77753 2 23
Q ss_pred cccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccc--cchh-hhhCCCCCcEEEeeeecccccccCCCcc
Q 045968 109 MSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIR--IPRQ-LISKFSRLRVLRMFAIGYDRFHEAPEDS 184 (402)
Q Consensus 109 ~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 184 (402)
+..+. +|++|++++|.+..++. .+..+++|++|++++|..... ++.. .+..+++|++|++.+|.+...
T Consensus 141 ~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l------- 212 (310)
T 4glp_A 141 QWLKP-GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP------- 212 (310)
T ss_dssp TTBCS-CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-------
T ss_pred hhhcc-CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-------
Confidence 34566 99999999999987764 578999999999999543332 3221 146889999999999988521
Q ss_pred cccCCcchhhHh-hhcCCCCceEEEEecC
Q 045968 185 VLFGGGEVLIQE-LLGLKYLEVLELSLGS 212 (402)
Q Consensus 185 ~~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 212 (402)
...... +..+++|+.|+++.+.
T Consensus 213 ------~~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 213 ------TGVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp ------HHHHHHHHHHTCCCSSEECTTSC
T ss_pred ------HHHHHHHHhcCCCCCEEECCCCC
Confidence 112222 3567778777777554
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=2.2e-14 Score=129.93 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=128.8
Q ss_pred CccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccc
Q 045968 29 AGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVG 108 (402)
Q Consensus 29 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~ 108 (402)
..+..++.+..+++|+.|++++|.+..++....+++|++|++++| .+..+++ +..+++|++|++++| .++.++..
T Consensus 29 ~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N--~l~~l~~~ 103 (263)
T 1xeu_A 29 QSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRN--RLKNLNGI 103 (263)
T ss_dssp SCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSS--CCSCCTTC
T ss_pred CCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCC--ccCCcCcc
Confidence 344555566778899999999999998887788999999999988 7888877 889999999999999 88887653
Q ss_pred cccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccC
Q 045968 109 MSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFG 188 (402)
Q Consensus 109 ~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 188 (402)
.. . +|++|++++|.+..++ .+..+++|+.|++++ +.++.++. +..+++|++|++.+|.+..
T Consensus 104 ~~--~-~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~------------ 164 (263)
T 1xeu_A 104 PS--A-CLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITN------------ 164 (263)
T ss_dssp CC--S-SCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCB------------
T ss_pred cc--C-cccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcc------------
Confidence 33 5 9999999999998875 588999999999999 57888864 8899999999999988852
Q ss_pred CcchhhHhhhcCCCCceEEEEecCc
Q 045968 189 GGEVLIQELLGLKYLEVLELSLGSY 213 (402)
Q Consensus 189 ~~~~~~~~l~~l~~L~~L~l~~~~~ 213 (402)
. ..+..+++|+.|+++++..
T Consensus 165 --~---~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 165 --T---GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp --C---TTSTTCCCCCEEEEEEEEE
T ss_pred --h---HHhccCCCCCEEeCCCCcc
Confidence 1 4577788888888886543
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=2.5e-14 Score=144.37 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=57.2
Q ss_pred EEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCC
Q 045968 46 LSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTG 125 (402)
Q Consensus 46 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~ 125 (402)
+.+..+.+.++.....+++|+.|.+++| .+..++. +..+++|+.|++++| .+..++. +..+. +|++|+|++|.
T Consensus 26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N--~l~~~~~-l~~l~-~L~~L~Ls~N~ 98 (605)
T 1m9s_A 26 DNLKKKSVTDAVTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGN--KLTDIKP-LTNLK-NLGWLFLDENK 98 (605)
T ss_dssp HHTTCSCTTSEECHHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTS--CCCCCGG-GGGCT-TCCEEECCSSC
T ss_pred HhccCCCcccccchhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCC--CCCCChh-hccCC-CCCEEECcCCC
Confidence 3333334443333344455555555544 4444432 455555555555555 4544433 44444 55555555555
Q ss_pred CccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 126 ITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 126 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
+..+| .+..+++|+.|++++ +.+..++. +..+++|+.|++.+|.+
T Consensus 99 l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 99 IKDLS-SLKDLKKLKSLSLEH-NGISDING--LVHLPQLESLYLGNNKI 143 (605)
T ss_dssp CCCCT-TSTTCTTCCEEECTT-SCCCCCGG--GGGCTTCSEEECCSSCC
T ss_pred CCCCh-hhccCCCCCEEEecC-CCCCCCcc--ccCCCccCEEECCCCcc
Confidence 55443 344555555555555 24444432 45555555555555544
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=4.4e-14 Score=125.24 Aligned_cols=146 Identities=26% Similarity=0.341 Sum_probs=101.8
Q ss_pred EEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcc
Q 045968 24 LVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101 (402)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 101 (402)
+...+..+..+|... ..+++.|++++|.+..++. ...+++|++|++++| .+..++...|..+++|++|++++| .
T Consensus 24 v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N--~ 99 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN--Q 99 (229)
T ss_dssp EECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--C
T ss_pred eEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC--c
Confidence 444555566665422 2677778887777777643 366777777777777 667777666777777888888777 7
Q ss_pred cccccc-ccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 102 RLKLPV-GMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 102 i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
++.++. .+..+. +|++|++++|.+..+|..+..+++|++|++++ +.++.++...+..+++|++|++.+|.+.
T Consensus 100 l~~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLV-HLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCT-TCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcch-hhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 776643 355666 77788887777777777777777778887777 5677776655777777777777776653
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=4.7e-14 Score=122.03 Aligned_cols=148 Identities=18% Similarity=0.263 Sum_probs=126.2
Q ss_pred cCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 20 KRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
....+...+..+..++.+..+++|+.|++++|.+..++....+++|++|++++| .+.......+..+++|++|++++|
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n- 122 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHS- 122 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEEECCSS-
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEEEecCC-
Confidence 356778888888888899999999999999999888888899999999999998 666533333899999999999999
Q ss_pred ccccc-cccccccccccccEEEecCCC-CccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 100 QGRLK-LPVGMSVLGSSLELLDISCTG-ITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 100 ~~i~~-l~~~~~~l~~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
.++. .+..+..+. +|++|++++|. +..+| .+..+++|++|++++ +.++.++. +..+++|++|++.++.+.
T Consensus 123 -~i~~~~~~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 123 -AHDDSILTKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -BCBGGGHHHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC---
T ss_pred -ccCcHhHHHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCcccC
Confidence 8885 467788888 99999999997 88887 789999999999999 57888873 899999999999998764
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=6.1e-14 Score=130.19 Aligned_cols=203 Identities=12% Similarity=0.008 Sum_probs=123.6
Q ss_pred CCccceEeccccccccccc-hH--HhccCCCCCEEEccCCCcccccc-cccc--ccccccccEEEecCCCCccc-c----
Q 045968 62 CPHLLTLFLDFNQELEMIA-DG--FFQLMPSLKVLKMSNCGQGRLKL-PVGM--SVLGSSLELLDISCTGITEL-P---- 130 (402)
Q Consensus 62 ~~~L~~L~l~~~~~l~~~~-~~--~~~~l~~L~~L~l~~~~~~i~~l-~~~~--~~l~~~L~~L~L~~~~l~~l-p---- 130 (402)
...++.+.+..+ .+.+.. .. .+..+++|++|++++| .+... |..+ ..+. +|++|++++|.+... +
T Consensus 63 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 63 ALRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDL--KITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp SCCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESC--CCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHH
T ss_pred hcceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCC--EeccchhhhhhhccCC-CCCEEEeecccccchhhhhHH
Confidence 344677777765 332211 11 1234577999999999 77744 6666 7777 999999999988742 2
Q ss_pred HhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchh--hHhhhcCCCCceEEE
Q 045968 131 EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVL--IQELLGLKYLEVLEL 208 (402)
Q Consensus 131 ~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~L~~L~l 208 (402)
..+..+++|++|++++ +.++.++...+.++++|++|++++|.+.. .... ...+..+++|+.|.+
T Consensus 139 ~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQ-AHSPAFSCEQVRAFPALTSLDLSDNPGLG-------------ERGLMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp HHTTBCSCCCEEEEEC-CSSCCCCTTSCCCCTTCCEEECCSCTTCH-------------HHHHHTTSCTTSSCCCCSCBC
T ss_pred HHhhhccCCCEEEeeC-CCcchhhHHHhccCCCCCEEECCCCCCcc-------------chhhhHHHhhhcCCCCCEEEC
Confidence 2356789999999999 57777776568899999999999998642 1111 112357888999999
Q ss_pred EecCchhhHhhhhh-hhhcccceeeEeccceeeeEeccccccccCCCC-ccc---cccccEEecccccCcccCcccccCC
Q 045968 209 SLGSYHALQILLSS-NKLKSCIRSLCLDGFELEELKIDYTEIVRKRRE-PFV---FRNLHRVTMVLCHKLKDVTFLVFAP 283 (402)
Q Consensus 209 ~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~-~~~---~~~L~~L~l~~~~~l~~l~~~~~l~ 283 (402)
+.+....+...... ......| ++|+++++......|. ... +++|++|++++| .++.++... ++
T Consensus 205 s~N~l~~l~~~~~~l~~~l~~L----------~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~ 272 (310)
T 4glp_A 205 RNTGMETPTGVCAALAAAGVQP----------HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PA 272 (310)
T ss_dssp CSSCCCCHHHHHHHHHHHTCCC----------SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CS
T ss_pred CCCCCCchHHHHHHHHhcCCCC----------CEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh-cC
Confidence 87766554443222 1222333 3333333333222111 002 256666666666 555554211 25
Q ss_pred CCCEEeecCCc
Q 045968 284 NLKSLDLDGCD 294 (402)
Q Consensus 284 ~L~~L~l~~c~ 294 (402)
+|++|++++|.
T Consensus 273 ~L~~L~Ls~N~ 283 (310)
T 4glp_A 273 KLRVLDLSSNR 283 (310)
T ss_dssp CCSCEECCSCC
T ss_pred CCCEEECCCCc
Confidence 66666666653
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=7.8e-14 Score=122.86 Aligned_cols=124 Identities=20% Similarity=0.269 Sum_probs=60.4
Q ss_pred EEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecC
Q 045968 45 RLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISC 123 (402)
Q Consensus 45 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~ 123 (402)
.++..++.++.+|.... ++++.|++++| .+..++...|..+++|++|++++| .++.+ |..|..+. +|++|++++
T Consensus 15 ~v~c~~~~l~~iP~~l~-~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N--~i~~~~~~~~~~l~-~L~~L~Ls~ 89 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP-ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN--QISELAPDAFQGLR-SLNSLVLYG 89 (220)
T ss_dssp EEECTTSCCSSCCSSCC-TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS--CCCEECTTTTTTCS-SCCEEECCS
T ss_pred EEEcCCCCcCcCCCccC-cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC--cCCCcCHHHhhCCc-CCCEEECCC
Confidence 34444444444443211 44555555544 444444433555555555555555 44444 34444444 555555555
Q ss_pred CCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 124 TGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 124 ~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
|.+..+|.. +..+++|+.|++++ +.++.++...+..+++|++|++.+|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 555555443 34455555555555 344444333355555555555555544
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1.5e-13 Score=121.01 Aligned_cols=148 Identities=25% Similarity=0.290 Sum_probs=126.3
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 99 (402)
..+...+.++..+|... ..+++.|++++|.+..++. ...+++|+.|++++| .+..+.+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-
Confidence 45666777788887533 2689999999999999875 478999999999999 788876666999999999999999
Q ss_pred ccccccccc-cccccccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 100 QGRLKLPVG-MSVLGSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 100 ~~i~~l~~~-~~~l~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
.++.+|.. |..+. +|++|++++|.+..++ ..+..+++|++|++++ +.++.++...+..+++|++|++.+|.+.
T Consensus 91 -~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 -KITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp -CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -cCCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 89988654 57788 9999999999999875 4588999999999999 6888888766899999999999988764
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=2.9e-14 Score=135.40 Aligned_cols=250 Identities=14% Similarity=0.081 Sum_probs=147.0
Q ss_pred EEccCCcccc-cCCC-CCCCccceEeccccccccccch----HHhccCC-CCCEEEccCCCcccccc-ccccccc-----
Q 045968 46 LSLMQNQIET-VSEV-PTCPHLLTLFLDFNQELEMIAD----GFFQLMP-SLKVLKMSNCGQGRLKL-PVGMSVL----- 112 (402)
Q Consensus 46 L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~~l~~~~~----~~~~~l~-~L~~L~l~~~~~~i~~l-~~~~~~l----- 112 (402)
+.++.+.+.. ++.. ...++|++|++++| .+.+.+. ..+..++ +|++|++++| .+... +..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN--SLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS--CGGGSCHHHHHHHHHTSC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC--CCCHHHHHHHHHHHhccC
Confidence 3455555553 2333 33445888888877 6666664 5567777 7888888888 67654 4444443
Q ss_pred cccccEEEecCCCCccccHh-----hhcC-CCCcEEEccCCCCccccchhhhh----C-CCCCcEEEeeeecccccccCC
Q 045968 113 GSSLELLDISCTGITELPEE-----LKKL-VNLKCLNLRWTGALIRIPRQLIS----K-FSRLRVLRMFAIGYDRFHEAP 181 (402)
Q Consensus 113 ~~~L~~L~L~~~~l~~lp~~-----i~~l-~~L~~L~l~~~~~~~~~~~~~l~----~-l~~L~~L~l~~~~~~~~~~~~ 181 (402)
. +|++|++++|.+...+.. +..+ ++|++|++++ +.++..+...+. . .++|++|++.+|.+...
T Consensus 80 ~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~---- 153 (362)
T 3goz_A 80 A-NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK---- 153 (362)
T ss_dssp T-TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS----
T ss_pred C-CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcC-CcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH----
Confidence 4 788888888877654332 4444 6788888887 456665543332 3 35788888877766421
Q ss_pred CcccccCCcc-hhhHhhhcCC-CCceEEEEecCchhhH--hhhhhhhhcccceeeEeccceeeeEeccccccccCCCCcc
Q 045968 182 EDSVLFGGGE-VLIQELLGLK-YLEVLELSLGSYHALQ--ILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPF 257 (402)
Q Consensus 182 ~~~~~~~~~~-~~~~~l~~l~-~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~ 257 (402)
.. .....+..++ +|+.|+++++...... .+.... .
T Consensus 154 --------~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--------------------------------~- 192 (362)
T 3goz_A 154 --------SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL--------------------------------A- 192 (362)
T ss_dssp --------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------H-
T ss_pred --------HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------H-
Confidence 11 1222334443 5655555543322110 000000 1
Q ss_pred cc-ccccEEecccccCccc-----Cc-cccc-CCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcc
Q 045968 258 VF-RNLHRVTMVLCHKLKD-----VT-FLVF-APNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDL 329 (402)
Q Consensus 258 ~~-~~L~~L~l~~~~~l~~-----l~-~~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 329 (402)
.+ ++|+.|++++| .+++ ++ .+.. .++|++|++++|.. .+.... ........+++|+.|++++|
T Consensus 193 ~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~-------~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 193 SIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSLE-------NLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp TSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCC-CCCCHH-------HHHHTTTTTTTCSEEEEEHH
T ss_pred hCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCC-CcHHHH-------HHHHHHhcCCCccEEEeccC
Confidence 23 58889999888 6766 32 3444 46999999999754 221100 11135577899999999987
Q ss_pred c-------cccccccCccCCCCccEEEecCCC
Q 045968 330 P-------NLESIYWKPLPFTRLKEMAVLGCD 354 (402)
Q Consensus 330 ~-------~l~~i~~~~~~~~~L~~L~i~~c~ 354 (402)
. .+..+......+++|+.|++++.+
T Consensus 264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 5 133444444457888888887764
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=3.4e-13 Score=117.50 Aligned_cols=146 Identities=22% Similarity=0.318 Sum_probs=107.3
Q ss_pred EEEEeCCccccCCCccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968 23 FLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100 (402)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (402)
.+.....++..+|... .++++.|++++|.+..++.. ..+++|++|++++| .+..++...|..+++|++|++++|
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-- 86 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-- 86 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC--
Confidence 3444555666665322 35788888888888776653 57888888888877 777777766788888888888888
Q ss_pred ccccccc-ccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 101 GRLKLPV-GMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 101 ~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
.++.++. .+..+. +|++|++++|.+..++.. +..+++|++|++++ +.++.++...+..+++|++|++.+|.+
T Consensus 87 ~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 87 QLQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCCccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCe
Confidence 7777754 356677 888888888888877665 57788888888888 567777765577788888888887765
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=2.3e-13 Score=119.80 Aligned_cols=145 Identities=16% Similarity=0.208 Sum_probs=76.2
Q ss_pred EEEeCCccccCCCccCCccceEEEccCCcccccCC---CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968 24 LVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE---VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100 (402)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (402)
+......+..+|..- ...++.|++++|.+..++. ...+++|++|++++| .+..+++..|..+++|++|++++|
T Consensus 16 l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-- 91 (220)
T 2v70_A 16 VDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-- 91 (220)
T ss_dssp EECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS--
T ss_pred eEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC--
Confidence 334444444444311 2345556666665555422 245556666666655 455555444555666666666666
Q ss_pred cccccc-cccccccccccEEEecCCCCccc-cHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968 101 GRLKLP-VGMSVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 101 ~i~~l~-~~~~~l~~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 174 (402)
.++.++ ..|..+. +|++|++++|.+..+ |..+..+++|+.|++++ +.++.++...+..+++|++|++.+|.+
T Consensus 92 ~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 92 RLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 555543 2344555 666666666655554 33355555666666655 355554333355556666666555544
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=2e-13 Score=129.50 Aligned_cols=170 Identities=24% Similarity=0.300 Sum_probs=132.3
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCCC--C-CCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV--P-TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~-~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 98 (402)
..+...+..+..+|... ...++.|++++|.+..++.. . .+++|++|++++| .+..+++..|..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 45666777788887532 35789999999999887654 3 8899999999988 888888777899999999999999
Q ss_pred Cccccccc-cccccccccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCccccchhhh---hCCCCCcEEEeeeec
Q 045968 99 GQGRLKLP-VGMSVLGSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALIRIPRQLI---SKFSRLRVLRMFAIG 173 (402)
Q Consensus 99 ~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~ 173 (402)
.++.++ ..|..+. +|++|++++|.+..++ ..+..+++|+.|++++ +.++.+|...+ ..+++|++|++.+|.
T Consensus 99 --~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 99 --HLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp --CCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred --cCCcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 888875 4577787 9999999999998774 4588899999999999 68888887655 568999999999988
Q ss_pred ccccccCCCcccccCCcchhhHhhhcCCC--CceEEEEecC
Q 045968 174 YDRFHEAPEDSVLFGGGEVLIQELLGLKY--LEVLELSLGS 212 (402)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~ 212 (402)
+... ....+..++. ++.|.+.++.
T Consensus 175 l~~l---------------~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 175 LKKL---------------PLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCC---------------CHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcc---------------CHHHhhhccHhhcceEEecCCC
Confidence 8532 2334555555 3677777544
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=1.7e-14 Score=130.79 Aligned_cols=145 Identities=21% Similarity=0.189 Sum_probs=108.3
Q ss_pred CCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccE
Q 045968 39 GWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLEL 118 (402)
Q Consensus 39 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~ 118 (402)
.+.++..+++.++.+++++....+++|++|++++| .+..++. +..+++|++|++++| .++.++. +..+. +|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~L~~N--~i~~~~~-l~~l~-~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHN--QISDLSP-LKDLT-KLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTS-CCCCCTT--GGGCTTCCEEECCSS--CCCCCGG-GTTCS-SCCE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCC-CcccchH--HhhCCCCCEEECCCC--ccCCChh-hccCC-CCCE
Confidence 44566677788888877776677888888888887 7777763 788888888888888 7887765 77777 8888
Q ss_pred EEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhh
Q 045968 119 LDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELL 198 (402)
Q Consensus 119 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (402)
|++++|.+..+|.... ++|+.|++++ +.++.++. +.++++|++|++.+|.+.. +..+.
T Consensus 90 L~L~~N~l~~l~~~~~--~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-----------------~~~l~ 147 (263)
T 1xeu_A 90 LSVNRNRLKNLNGIPS--ACLSRLFLDN-NELRDTDS--LIHLKNLEILSIRNNKLKS-----------------IVMLG 147 (263)
T ss_dssp EECCSSCCSCCTTCCC--SSCCEEECCS-SCCSBSGG--GTTCTTCCEEECTTSCCCB-----------------CGGGG
T ss_pred EECCCCccCCcCcccc--CcccEEEccC-CccCCChh--hcCcccccEEECCCCcCCC-----------------ChHHc
Confidence 8888888887765333 8888888888 47777764 7888888888888887742 12456
Q ss_pred cCCCCceEEEEecC
Q 045968 199 GLKYLEVLELSLGS 212 (402)
Q Consensus 199 ~l~~L~~L~l~~~~ 212 (402)
.+++|+.|+++++.
T Consensus 148 ~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 148 FLSKLEVLDLHGNE 161 (263)
T ss_dssp GCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCc
Confidence 66777777766543
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=3.8e-13 Score=119.15 Aligned_cols=150 Identities=22% Similarity=0.253 Sum_probs=125.3
Q ss_pred cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccc-ccccccccccEEE
Q 045968 42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV-GMSVLGSSLELLD 120 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~~L~~L~ 120 (402)
..+.++.+++.+..+|... .++|++|++++| .+..+++..|..+++|++|++++| .+..++. .|..+. +|++|+
T Consensus 20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~~~~~l~-~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSN--QLGALPVGVFDSLT-QLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCT-TCCEEE
T ss_pred eCCEeEccCCCcCccCCCC-CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCC--CCCCcChhhcccCC-CcCEEE
Confidence 4567889998888888643 389999999998 788876666999999999999999 8988864 467788 999999
Q ss_pred ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968 121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG 199 (402)
Q Consensus 121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (402)
+++|.+..++.. +..+++|++|++++ +.++.+|.. +..+++|++|++.+|.+... ....+..
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~ 157 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSI---------------PHGAFDR 157 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCC---------------CTTTTTT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCcc---------------CHHHHhC
Confidence 999999988776 68899999999999 688899876 89999999999999988532 2234677
Q ss_pred CCCCceEEEEecCc
Q 045968 200 LKYLEVLELSLGSY 213 (402)
Q Consensus 200 l~~L~~L~l~~~~~ 213 (402)
+++|+.|.+.++..
T Consensus 158 l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 158 LSSLTHAYLFGNPW 171 (229)
T ss_dssp CTTCCEEECTTSCB
T ss_pred CCCCCEEEeeCCCc
Confidence 88899999886543
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=4.2e-13 Score=118.11 Aligned_cols=150 Identities=17% Similarity=0.245 Sum_probs=123.5
Q ss_pred ceEEEccCCcccccCCCCCCCccceEecccccccccc-chHHhccCCCCCEEEccCCCccccccc-cccccccccccEEE
Q 045968 43 VRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMI-ADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGSSLELLD 120 (402)
Q Consensus 43 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~L~~L~ 120 (402)
-+.++++++.++.+|.. -.+.+++|++++| .+..+ +...|..+++|++|++++| .++.++ ..|..+. +|++|+
T Consensus 13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N--~i~~i~~~~~~~l~-~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN--KITDIEEGAFEGAS-GVNEIL 87 (220)
T ss_dssp TTEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS--CCCEECTTTTTTCT-TCCEEE
T ss_pred CCEeEeCCCCcccCccC-CCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC--cCCEECHHHhCCCC-CCCEEE
Confidence 35799999999988764 2456789999998 77776 4455899999999999999 899885 4788888 999999
Q ss_pred ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968 121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG 199 (402)
Q Consensus 121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (402)
+++|.+..++.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+... ....+..
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~ 151 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTV---------------APGAFDT 151 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCB---------------CTTTTTT
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEE---------------CHHHhcC
Confidence 999999988765 88999999999999 688887655689999999999999988532 2345667
Q ss_pred CCCCceEEEEecCc
Q 045968 200 LKYLEVLELSLGSY 213 (402)
Q Consensus 200 l~~L~~L~l~~~~~ 213 (402)
+++|+.|+++++..
T Consensus 152 l~~L~~L~L~~N~l 165 (220)
T 2v70_A 152 LHSLSTLNLLANPF 165 (220)
T ss_dssp CTTCCEEECCSCCE
T ss_pred CCCCCEEEecCcCC
Confidence 88899999886654
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.6e-13 Score=115.08 Aligned_cols=134 Identities=21% Similarity=0.273 Sum_probs=107.1
Q ss_pred CCccCCccceEEEccCCcccccCCCCCCC-ccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccc-ccc
Q 045968 35 PDVKGWENVRRLSLMQNQIETVSEVPTCP-HLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGM-SVL 112 (402)
Q Consensus 35 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~-~~l 112 (402)
+.+..+.+++.|++++|.+..++....+. +|++|++++| .+..++ . +..+++|++|++++| .++.+|..+ ..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~-~-l~~l~~L~~L~Ls~N--~l~~~~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLD-G-FPLLRRLKTLLVNNN--RICRIGEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEEC-C-CCCCSSCCEEECCSS--CCCEECSCHHHHC
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCccc-c-cccCCCCCEEECCCC--cccccCcchhhcC
Confidence 44455678999999999888887665544 9999999988 777763 2 888999999999999 888886554 777
Q ss_pred cccccEEEecCCCCccccH--hhhcCCCCcEEEccCCCCccccchh---hhhCCCCCcEEEeeeeccc
Q 045968 113 GSSLELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALIRIPRQ---LISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 113 ~~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~ 175 (402)
+ +|++|++++|.+..+|. .+..+++|+.|++++ +.+..+|.. .+..+++|++|++..+...
T Consensus 88 ~-~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 P-DLTELILTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp T-TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred C-CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7 99999999999988887 688889999999998 567777653 4778889999988887664
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=3.8e-13 Score=113.03 Aligned_cols=129 Identities=22% Similarity=0.226 Sum_probs=102.3
Q ss_pred ccceEEEccCCccc--ccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccc-cccccccccccc
Q 045968 41 ENVRRLSLMQNQIE--TVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLK-LPVGMSVLGSSL 116 (402)
Q Consensus 41 ~~l~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~-l~~~~~~l~~~L 116 (402)
++++.|++++|.+. .++.. ..+++|++|++++| .+..+ . .+..+++|++|++++| .+.. +|..+..+. +|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~-~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~-~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-S-NLPKLPKLKKLELSEN--RIFGGLDMLAEKLP-NL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-S-SCCCCSSCCEEEEESC--CCCSCCCHHHHHCT-TC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-h-hhccCCCCCEEECcCC--cCchHHHHHHhhCC-CC
Confidence 67888999988887 67766 77888999999888 57766 3 3788888999999988 7776 566666677 89
Q ss_pred cEEEecCCCCcccc--HhhhcCCCCcEEEccCCCCccccch---hhhhCCCCCcEEEeeeecccc
Q 045968 117 ELLDISCTGITELP--EELKKLVNLKCLNLRWTGALIRIPR---QLISKFSRLRVLRMFAIGYDR 176 (402)
Q Consensus 117 ~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~ 176 (402)
++|++++|.+..+| ..+..+++|+.|++++ +.++.++. ..+..+++|++|++.+|....
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999998888876 5678888899999988 46777665 347888889998888887654
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=9.4e-13 Score=114.70 Aligned_cols=148 Identities=23% Similarity=0.266 Sum_probs=119.7
Q ss_pred ceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccc-ccccccccccEEEe
Q 045968 43 VRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV-GMSVLGSSLELLDI 121 (402)
Q Consensus 43 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~~L~~L~L 121 (402)
-+.++..++.+..+|.. ..++|++|++++| .+..++...+..+++|++|++++| .++.++. .+..+. +|++|++
T Consensus 9 ~~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~-~L~~L~L 83 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTG-IPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN--KLQSLPNGVFNKLT-SLTYLNL 83 (208)
T ss_dssp TTEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCT-TCCEEEC
T ss_pred CCEEEecCCCccCCCCC-CCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC--ccCccChhhcCCCC-CcCEEEC
Confidence 35677888888877744 3568999999998 788888877899999999999999 8888865 457777 9999999
Q ss_pred cCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968 122 SCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL 200 (402)
Q Consensus 122 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 200 (402)
++|.+..++.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+... ....+..+
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---------------~~~~~~~l 147 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKSV---------------PDGVFDRL 147 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCCcccee---------------CHHHhccC
Confidence 99999988765 68899999999999 688888876688999999999999887532 11235567
Q ss_pred CCCceEEEEec
Q 045968 201 KYLEVLELSLG 211 (402)
Q Consensus 201 ~~L~~L~l~~~ 211 (402)
++|+.|+++++
T Consensus 148 ~~L~~L~l~~N 158 (208)
T 2o6s_A 148 TSLQYIWLHDN 158 (208)
T ss_dssp TTCCEEECCSC
T ss_pred CCccEEEecCC
Confidence 77777777644
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=3.9e-13 Score=110.62 Aligned_cols=123 Identities=24% Similarity=0.233 Sum_probs=97.0
Q ss_pred ccceEEEccCCccc--ccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccc-cccccccccccc
Q 045968 41 ENVRRLSLMQNQIE--TVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLK-LPVGMSVLGSSL 116 (402)
Q Consensus 41 ~~l~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~-l~~~~~~l~~~L 116 (402)
++++.|++++|.+. .++.. ..+++|++|++++| .+..+ ..+..+++|++|++++| .++. +|..+..+. +|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~-~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDN--RVSGGLEVLAEKCP-NL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSS--CCCSCTHHHHHHCT-TC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCC--cccchHHHHhhhCC-CC
Confidence 67888999988887 66655 77888999999888 67666 33788888999999888 7776 566666677 89
Q ss_pred cEEEecCCCCcccc--HhhhcCCCCcEEEccCCCCccccch---hhhhCCCCCcEEEee
Q 045968 117 ELLDISCTGITELP--EELKKLVNLKCLNLRWTGALIRIPR---QLISKFSRLRVLRMF 170 (402)
Q Consensus 117 ~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~ 170 (402)
++|++++|.+..++ ..+..+++|++|++++ +.++.++. ..+..+++|++|++.
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence 99999888888765 5688888889999888 46777665 457888888888764
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=6.2e-13 Score=126.13 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=125.0
Q ss_pred ceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhc-cCCCCCEEEccCCCccccccc-cccccccccccEEE
Q 045968 43 VRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQ-LMPSLKVLKMSNCGQGRLKLP-VGMSVLGSSLELLD 120 (402)
Q Consensus 43 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~L~~L~ 120 (402)
-+.+++.++.++.+|.. -.+.++.|++++| .+..++...+. .+++|++|++++| .++.++ ..|..+. +|++|+
T Consensus 20 ~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N--~i~~i~~~~~~~l~-~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN--HLNFISSEAFVPVP-NLRYLD 94 (361)
T ss_dssp TTEEECCSSCCSSCCSS-CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS--CCCEECTTTTTTCT-TCCEEE
T ss_pred CCEEEeCCCCcCccCcc-CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC--cCCccChhhccCCC-CCCEEE
Confidence 35789999999888764 2356899999998 88888877677 9999999999999 899885 5688888 999999
Q ss_pred ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968 121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG 199 (402)
Q Consensus 121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (402)
+++|.+..++.. +..+++|+.|++++ +.++.++...+.++++|++|++.+|.+... ....+..+..
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l------------~~~~~~~~~~ 161 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISRF------------PVELIKDGNK 161 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCSC------------CGGGTC----
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCCcCCee------------CHHHhcCccc
Confidence 999999988764 78999999999999 688888666699999999999999988643 2222223367
Q ss_pred CCCCceEEEEecCchhh
Q 045968 200 LKYLEVLELSLGSYHAL 216 (402)
Q Consensus 200 l~~L~~L~l~~~~~~~~ 216 (402)
+++|+.|+++.+....+
T Consensus 162 l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CTTCCEEECCSSCCCCC
T ss_pred CCcCCEEECCCCCCCcc
Confidence 88999999987765543
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=3.4e-12 Score=127.56 Aligned_cols=183 Identities=21% Similarity=0.198 Sum_probs=115.6
Q ss_pred cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEe
Q 045968 42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI 121 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L 121 (402)
+++.|++++|.+..+|... +++|++|++++| .+..+| ..+++|++|++++| .++.+|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N--~l~~ip~-l~~---~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQN-ALISLP----ELPASLEYLDACDN--RLSTLPE-LPA---SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSS--CCSCCCC-CCT---TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCC-CCcccc----cccCCCCEEEccCC--CCCCcch-hhc---CCCEEEC
Confidence 6777777777777766532 367777777777 666666 34677777777777 6777666 443 7777777
Q ss_pred cCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCC
Q 045968 122 SCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLK 201 (402)
Q Consensus 122 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 201 (402)
++|.+..+|. .+++|+.|++++ +.++.+|. .+++|++|++.+|.+... ..+. +
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~----~l~~L~~L~Ls~N~L~~l-----------------p~l~--~ 180 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADN-NQLTMLPE----LPTSLEVLSVRNNQLTFL-----------------PELP--E 180 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSCC-----------------CCCC--T
T ss_pred CCCcCCCCCC---cCccccEEeCCC-CccCcCCC----cCCCcCEEECCCCCCCCc-----------------chhh--C
Confidence 7777777766 567777777777 46666664 466777777777766421 0011 4
Q ss_pred CCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc----cccccccEEecccccCcccCc
Q 045968 202 YLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP----FVFRNLHRVTMVLCHKLKDVT 277 (402)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~l~ 277 (402)
+|+.|+++.+. |+ ..+... ...+.|+.|++++| .++.+|
T Consensus 181 ~L~~L~Ls~N~--------------------------L~----------~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp 223 (571)
T 3cvr_A 181 SLEALDVSTNL--------------------------LE----------SLPAVPVRNHHSEETEIFFRCREN-RITHIP 223 (571)
T ss_dssp TCCEEECCSSC--------------------------CS----------SCCCCC--------CCEEEECCSS-CCCCCC
T ss_pred CCCEEECcCCC--------------------------CC----------chhhHHHhhhcccccceEEecCCC-cceecC
Confidence 44444444332 22 111100 02233488888887 777776
Q ss_pred -ccccCCCCCEEeecCCcchHHHh
Q 045968 278 -FLVFAPNLKSLDLDGCDAMEEII 300 (402)
Q Consensus 278 -~~~~l~~L~~L~l~~c~~l~~~~ 300 (402)
.+..+++|+.|++++|+.-..++
T Consensus 224 ~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 224 ENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp GGGGGSCTTEEEECCSSSCCHHHH
T ss_pred HHHhcCCCCCEEEeeCCcCCCcCH
Confidence 46678889999999887655544
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=1.9e-12 Score=129.42 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=107.0
Q ss_pred CCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEE
Q 045968 89 SLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLR 168 (402)
Q Consensus 89 ~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 168 (402)
+|++|++++| .++.+|..+. . +|++|++++|.+..+| ..+++|++|++++ +.++.+|. +.+ +|++|+
T Consensus 60 ~L~~L~Ls~n--~L~~lp~~l~--~-~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~-N~l~~ip~--l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRL--NLSSLPDNLP--P-QITVLEITQNALISLP---ELPASLEYLDACD-NRLSTLPE--LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSS--CCSCCCSCCC--T-TCSEEECCSSCCSCCC---CCCTTCCEEECCS-SCCSCCCC--CCT--TCCEEE
T ss_pred CccEEEeCCC--CCCccCHhHc--C-CCCEEECcCCCCcccc---cccCCCCEEEccC-CCCCCcch--hhc--CCCEEE
Confidence 6666666666 5666655442 3 6666666666666666 3456666666666 35555554 333 666666
Q ss_pred eeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccc
Q 045968 169 MFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTE 248 (402)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~ 248 (402)
+.+|.+... .. .+++|+.|+++++....++. ..+ +|++|+++++.
T Consensus 127 Ls~N~l~~l-----------------p~--~l~~L~~L~Ls~N~l~~lp~------~l~----------~L~~L~Ls~N~ 171 (571)
T 3cvr_A 127 VDNNQLTML-----------------PE--LPALLEYINADNNQLTMLPE------LPT----------SLEVLSVRNNQ 171 (571)
T ss_dssp CCSSCCSCC-----------------CC--CCTTCCEEECCSSCCSCCCC------CCT----------TCCEEECCSSC
T ss_pred CCCCcCCCC-----------------CC--cCccccEEeCCCCccCcCCC------cCC----------CcCEEECCCCC
Confidence 666655321 11 35566666666554333221 122 34444444444
Q ss_pred cccCCCCccccccccEEecccccCcccCcccccCCCC-------CEEeecCCcchHHHhhcCCCCCCccccCCCCCCCcc
Q 045968 249 IVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNL-------KSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENL 321 (402)
Q Consensus 249 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L-------~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L 321 (402)
....+. - . ++|+.|++++| .++.++.+.. +| +.|++++|. ++.++ ..+..+++|
T Consensus 172 L~~lp~-l-~-~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp------------~~l~~l~~L 232 (571)
T 3cvr_A 172 LTFLPE-L-P-ESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRCRENR-ITHIP------------ENILSLDPT 232 (571)
T ss_dssp CSCCCC-C-C-TTCCEEECCSS-CCSSCCCCC----------CCEEEECCSSC-CCCCC------------GGGGGSCTT
T ss_pred CCCcch-h-h-CCCCEEECcCC-CCCchhhHHH--hhhcccccceEEecCCCc-ceecC------------HHHhcCCCC
Confidence 433222 2 3 89999999998 7888876332 67 999999975 44443 245569999
Q ss_pred ceeecCcccccccc
Q 045968 322 QRLNLEDLPNLESI 335 (402)
Q Consensus 322 ~~L~l~~c~~l~~i 335 (402)
+.|++++++--..+
T Consensus 233 ~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 233 CTIILEDNPLSSRI 246 (571)
T ss_dssp EEEECCSSSCCHHH
T ss_pred CEEEeeCCcCCCcC
Confidence 99999997643333
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=7.7e-12 Score=107.66 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=102.3
Q ss_pred eEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc-cccccccccccEEEec
Q 045968 44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGSSLELLDIS 122 (402)
Q Consensus 44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~L~~L~L~ 122 (402)
+.++++++.+..+|.. -.++|++|++++| .+..+|.. |..+++|++|++++| .++.++ ..|..+. +|++|+++
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n-~i~~ip~~-~~~l~~L~~L~Ls~N--~i~~i~~~~f~~l~-~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGN-QFTLVPKE-LSNYKHLTLIDLSNN--RISTLSNQSFSNMT-QLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSS-CCCSCCGG-GGGCTTCCEEECCSS--CCCCCCTTTTTTCT-TCCEEECC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCC-cCchhHHH-hhcccCCCEEECCCC--cCCEeCHhHccCCC-CCCEEECC
Confidence 4688888888888754 2368899999988 77788754 889999999999999 888874 5678888 99999999
Q ss_pred CCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 123 CTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 123 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
+|.+..++. .+..+++|+.|++++ +.++.++...+..+++|++|++.+|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999988765 478889999999998 6888888766888999999998887663
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=3.6e-12 Score=107.99 Aligned_cols=124 Identities=20% Similarity=0.250 Sum_probs=109.6
Q ss_pred cCcEEEEeCCccccCCCccCCc-cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968 20 KRNFLVRAGAGLKEAPDVKGWE-NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98 (402)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 98 (402)
+...+...+..+..++.+..+. +|+.|++++|.+..++....+++|++|++++| .+..+++..+..+++|++|++++|
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC
Confidence 3467777787888888777776 99999999999999877799999999999999 888888776799999999999999
Q ss_pred Ccccccccc--ccccccccccEEEecCCCCccccHh----hhcCCCCcEEEccCC
Q 045968 99 GQGRLKLPV--GMSVLGSSLELLDISCTGITELPEE----LKKLVNLKCLNLRWT 147 (402)
Q Consensus 99 ~~~i~~l~~--~~~~l~~~L~~L~L~~~~l~~lp~~----i~~l~~L~~L~l~~~ 147 (402)
.+..+|. .+..+. +|++|++++|.+..+|.. +..+++|+.|+++.+
T Consensus 99 --~i~~~~~~~~l~~l~-~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 99 --SLVELGDLDPLASLK-SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp --CCCCGGGGGGGGGCT-TCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred --cCCcchhhHhhhcCC-CCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 8888876 778888 999999999999988875 889999999999985
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=1.5e-11 Score=103.12 Aligned_cols=134 Identities=22% Similarity=0.198 Sum_probs=112.2
Q ss_pred ccccCcEEEEeCCccc--cCCCc-cCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEE
Q 045968 17 EKEKRNFLVRAGAGLK--EAPDV-KGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVL 93 (402)
Q Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 93 (402)
.+.....+......+. .+|.. ..+++|+.|++++|.+..++....+++|++|++++| .+....+..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence 3455677888887777 67664 788999999999999998866789999999999999 6776344447889999999
Q ss_pred EccCCCccccccc--cccccccccccEEEecCCCCccccH----hhhcCCCCcEEEccCCCCccccch
Q 045968 94 KMSNCGQGRLKLP--VGMSVLGSSLELLDISCTGITELPE----ELKKLVNLKCLNLRWTGALIRIPR 155 (402)
Q Consensus 94 ~l~~~~~~i~~l~--~~~~~l~~~L~~L~L~~~~l~~lp~----~i~~l~~L~~L~l~~~~~~~~~~~ 155 (402)
++++| .++.++ ..+..+. +|++|++++|.+..+|. .+..+++|+.|++.+| ....+|.
T Consensus 101 ~Ls~N--~l~~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 101 NLSGN--KLKDISTLEPLKKLE-CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp ECBSS--SCCSSGGGGGGSSCS-CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred eccCC--ccCcchhHHHHhcCC-CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 99999 898875 6788888 99999999999998876 6889999999999995 6666654
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=1e-11 Score=105.16 Aligned_cols=127 Identities=21% Similarity=0.304 Sum_probs=104.8
Q ss_pred ceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccc-ccccccccccEEEe
Q 045968 43 VRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV-GMSVLGSSLELLDI 121 (402)
Q Consensus 43 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~~L~~L~L 121 (402)
.+.+++.++.+..+|.. ..++|++|++++| .+..++...+..+++|++|++++| .++.++. .+..+. +|++|++
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~-~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN--QIQSLPDGVFDKLT-KLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCT-TCCEEEC
T ss_pred CCEEEecCCCCccCCCC-CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC--cceEeChhHccCCC-ccCEEEC
Confidence 46788888888877743 3478999999988 777888776889999999999999 8888754 457777 9999999
Q ss_pred cCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 122 SCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 122 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
++|.+..+|.. +..+++|++|++++ +.++.+|...+..+++|++|++.+|.+.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCee
Confidence 99999888765 67889999999998 5788888776788999999999988774
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=8.7e-12 Score=107.19 Aligned_cols=127 Identities=18% Similarity=0.225 Sum_probs=101.1
Q ss_pred ceEEEccCCcccccCCCCCCCccceEeccccccccccchH-HhccCCCCCEEEccCCCcccccc-ccccccccccccEEE
Q 045968 43 VRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADG-FFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLD 120 (402)
Q Consensus 43 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~ 120 (402)
.+.++++++.+..+|... .+++++|++++| .+..++.. .|..+++|++|++++| .++.+ |..|..+. +|++|+
T Consensus 10 ~~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~-~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDI-PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN--QLTGIEPNAFEGAS-HIQELQ 84 (192)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS--CCCCBCTTTTTTCT-TCCEEE
T ss_pred CCEEEcCCCCcCcCccCC-CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC--CCCCcCHhHcCCcc-cCCEEE
Confidence 367888888888887642 238889999988 77776653 4788999999999999 88877 67788888 999999
Q ss_pred ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
+++|.+..++.. +..+++|++|++++ +.++.++...+..+++|++|++.+|.+.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999988877654 77889999999998 5777765445888999999999888764
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=4.1e-11 Score=98.37 Aligned_cols=125 Identities=20% Similarity=0.183 Sum_probs=104.8
Q ss_pred cccCcEEEEeCCccc--cCCC-ccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEE
Q 045968 18 KEKRNFLVRAGAGLK--EAPD-VKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLK 94 (402)
Q Consensus 18 ~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 94 (402)
+.+...+...+..+. .+|. +..+++++.|++++|.+..++....+++|++|++++| .+....+..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEE
Confidence 445677888887777 6665 4788999999999999998866789999999999999 77763344488899999999
Q ss_pred ccCCCccccccc--cccccccccccEEEecCCCCccccH----hhhcCCCCcEEEccC
Q 045968 95 MSNCGQGRLKLP--VGMSVLGSSLELLDISCTGITELPE----ELKKLVNLKCLNLRW 146 (402)
Q Consensus 95 l~~~~~~i~~l~--~~~~~l~~~L~~L~L~~~~l~~lp~----~i~~l~~L~~L~l~~ 146 (402)
+++| .++.++ ..++.++ +|++|++++|.+..+|. .+..+++|+.|++++
T Consensus 95 ls~N--~i~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGN--KIKDLSTIEPLKKLE-NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTS--CCCSHHHHGGGGGCT-TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCC--cCCChHHHHHHhhCC-CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999 888764 7788888 99999999999988876 588999999998863
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=1.3e-11 Score=115.52 Aligned_cols=219 Identities=14% Similarity=0.094 Sum_probs=108.2
Q ss_pred ccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCc
Q 045968 112 LGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGG 190 (402)
Q Consensus 112 l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 190 (402)
+. +|+.|++.. .+..++.. +..+++|+.+++.. +.+..++..++.++.++..+........... .
T Consensus 100 ~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~-----------~ 165 (329)
T 3sb4_A 100 KQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFK-----------N 165 (329)
T ss_dssp CT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTS-----------T
T ss_pred cC-CCcEEECCc-cccchhHHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhcc-----------c
Confidence 66 888888887 77777664 67788888888887 5666777766777766666654331110000 0
Q ss_pred chhhHhhhcCCCCc-eEEEEecCchhhHhh-hhhhhhcccceeeEeccceeeeEeccccccccCCC-CccccccccEEec
Q 045968 191 EVLIQELLGLKYLE-VLELSLGSYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRR-EPFVFRNLHRVTM 267 (402)
Q Consensus 191 ~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~-~~~~~~~L~~L~l 267 (402)
...-..+..+..|+ .+.+.. ...+... ....-... ++..+.+.+.-...... ....+++|+.|++
T Consensus 166 ~i~~~~f~~~~~L~~~i~~~~--~~~l~~~~~~~~~~~~----------~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L 233 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETTIQVGA--MGKLEDEIMKAGLQPR----------DINFLTIEGKLDNADFKLIRDYMPNLVSLDI 233 (329)
T ss_dssp TTTTSCEEESCCCEEEEEECT--TCCHHHHHHHTTCCGG----------GCSEEEEEECCCHHHHHHHHHHCTTCCEEEC
T ss_pred cccccccccccccceeEEecC--CCcHHHHHhhcccCcc----------ccceEEEeeeecHHHHHHHHHhcCCCeEEEC
Confidence 00001122333343 333321 1111111 11111111 22222222211000000 0002566777777
Q ss_pred ccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccc-eeecCccccccccccCc-cCCC
Q 045968 268 VLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQ-RLNLEDLPNLESIYWKP-LPFT 343 (402)
Q Consensus 268 ~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~i~~~~-~~~~ 343 (402)
.++ .++.++ .|..+++|+.|++.++ ++.+.. ..+.++++|+ .+.+.+ .++.|.... ..|+
T Consensus 234 ~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-----------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 234 SKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-----------RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCD 297 (329)
T ss_dssp TTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-----------TTTTTCTTCCEEEEECT--TCCEECTTTTTTCT
T ss_pred CCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-----------HHhhCChhccEEEEEcc--cceEEchhhhhCCc
Confidence 665 456654 4566677777777664 444322 3556666776 777765 555554332 2366
Q ss_pred CccEEEecCCCCCCCCCCCCCCCCCCeeEE
Q 045968 344 RLKEMAVLGCDQLEKLPVDSNSAKERKFVI 373 (402)
Q Consensus 344 ~L~~L~i~~c~~L~~lp~~~~~~~~~~~~~ 373 (402)
+|+.+++.+ .+++.++........+++.+
T Consensus 298 ~L~~l~l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 298 NLRYVLATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TEEEEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred cCCEEEeCC-CccCccchhhhcCCcchhhh
Confidence 777777643 35666655444444555544
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=3.6e-11 Score=120.53 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=100.0
Q ss_pred ccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEE
Q 045968 64 HLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLN 143 (402)
Q Consensus 64 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 143 (402)
.|+.|++++| .+..+|. +..+++|++|++++| .++.+|..++.+. +|++|++++|.+..+| .+..+++|+.|+
T Consensus 442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHN--RLRALPPALAALR-CLEVLQASDNALENVD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSS--CCCCCCGGGGGCT-TCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred CceEEEecCC-CCCCCcC--ccccccCcEeecCcc--cccccchhhhcCC-CCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence 5889999988 7888876 889999999999999 8888888899888 9999999999999888 888999999999
Q ss_pred ccCCCCcccc--chhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEE
Q 045968 144 LRWTGALIRI--PRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLE 207 (402)
Q Consensus 144 l~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 207 (402)
+++ +.++.+ |.. +.++++|++|++.+|.+...+ .........+++|+.|+
T Consensus 515 Ls~-N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~------------~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 515 LCN-NRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE------------GIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCS-SCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS------------SCTTHHHHHCTTCSEEE
T ss_pred CCC-CCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc------------cHHHHHHHHCcccCccC
Confidence 998 577777 554 899999999999999886421 11122344477787775
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.2e-10 Score=100.23 Aligned_cols=124 Identities=26% Similarity=0.279 Sum_probs=105.6
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (402)
..+...+..+..+|... .++++.|++++|.+..++.. ..+++|++|++++| .+..++...|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-- 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-- 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC--
Confidence 45666777788887532 36899999999999988744 78999999999999 888888777999999999999999
Q ss_pred cccccc-cccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCcc
Q 045968 101 GRLKLP-VGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALI 151 (402)
Q Consensus 101 ~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~ 151 (402)
.++.++ ..|..+. +|++|++++|.+..+|.. +..+++|+.|++.+| .+.
T Consensus 89 ~l~~i~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLK-SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN-PLY 139 (193)
T ss_dssp CCCBCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS-CEE
T ss_pred ccCEeCHHHhCCCC-CCCEEECCCCCCCeeChhhhhcCccccEEEeCCC-Cee
Confidence 899885 5688888 999999999999999875 788999999999994 443
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=7.6e-11 Score=118.16 Aligned_cols=152 Identities=19% Similarity=0.181 Sum_probs=115.2
Q ss_pred CCCCccceEe-ccccccccccchHH-----hcc--CCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccH
Q 045968 60 PTCPHLLTLF-LDFNQELEMIADGF-----FQL--MPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPE 131 (402)
Q Consensus 60 ~~~~~L~~L~-l~~~~~l~~~~~~~-----~~~--l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~ 131 (402)
..+++|+.|+ ++.+ .+.+++.-. +.. ...|++|++++| .++.+|. ++.+. +|++|++++|.+..+|.
T Consensus 406 ~~l~~L~~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n--~l~~lp~-~~~l~-~L~~L~Ls~N~l~~lp~ 480 (567)
T 1dce_A 406 QYFSTLKAVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHK--DLTVLCH-LEQLL-LVTHLDLSHNRLRALPP 480 (567)
T ss_dssp HHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTS--CCSSCCC-GGGGT-TCCEEECCSSCCCCCCG
T ss_pred HHHHhcccCcchhhc-ccchhhhhhhhcccccccCccCceEEEecCC--CCCCCcC-ccccc-cCcEeecCcccccccch
Confidence 4578888888 4544 333332210 111 136999999999 8999987 88888 99999999999999999
Q ss_pred hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEec
Q 045968 132 ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLG 211 (402)
Q Consensus 132 ~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 211 (402)
.++.+++|+.|++++ +.++.+| . +.++++|++|++++|.+... .....+..+++|+.|+++++
T Consensus 481 ~~~~l~~L~~L~Ls~-N~l~~lp-~-l~~l~~L~~L~Ls~N~l~~~--------------~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 481 ALAALRCLEVLQASD-NALENVD-G-VANLPRLQELLLCNNRLQQS--------------AAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp GGGGCTTCCEEECCS-SCCCCCG-G-GTTCSSCCEEECCSSCCCSS--------------STTGGGGGCTTCCEEECTTS
T ss_pred hhhcCCCCCEEECCC-CCCCCCc-c-cCCCCCCcEEECCCCCCCCC--------------CCcHHHhcCCCCCEEEecCC
Confidence 999999999999999 6888888 3 99999999999999988531 11456888999999999998
Q ss_pred CchhhHhh-hhhhhhcccceeeE
Q 045968 212 SYHALQIL-LSSNKLKSCIRSLC 233 (402)
Q Consensus 212 ~~~~~~~~-~~~~~~~~~L~~L~ 233 (402)
........ .......++|+.|+
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCccHHHHHHHHCcccCccC
Confidence 88766432 22333455666653
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=2.7e-12 Score=110.97 Aligned_cols=126 Identities=23% Similarity=0.232 Sum_probs=86.8
Q ss_pred cceEEEccCC--cccccCC-CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccE
Q 045968 42 NVRRLSLMQN--QIETVSE-VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLEL 118 (402)
Q Consensus 42 ~l~~L~l~~~--~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~ 118 (402)
.++...+.+. .++.++. ...+++|++|++++| .+..++ .+..+++|++|++++| .++.+|..+..+. +|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n--~l~~l~~~~~~~~-~L~~ 97 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRN--LIKKIENLDAVAD-TLEE 97 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEE--EECSCSSHHHHHH-HCSE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCC--CcccccchhhcCC-cCCE
Confidence 3444444443 3333332 256778888888877 666666 3777888888888888 7777776666666 8888
Q ss_pred EEecCCCCccccHhhhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeeccc
Q 045968 119 LDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 119 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 175 (402)
|++++|.+..+| .+..+++|++|++++ +.++.++. ..+..+++|++|++.+|.+.
T Consensus 98 L~L~~N~l~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 98 LWISYNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEEEEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred EECcCCcCCcCC-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 888888777776 577778888888887 46666553 33777888888888877663
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=3.2e-11 Score=124.47 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=87.5
Q ss_pred CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCC
Q 045968 60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNL 139 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L 139 (402)
..++.|+.|++++| .+..++.. +..+++|++|+|++| .++.+|..++.+. +|++|+|++|.+..+|..+..+++|
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~~-~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISAN-IFKYDFLTRLYLNGN--SLTELPAEIKNLS-NLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCGG-GGGCCSCSCCBCTTS--CCSCCCGGGGGGT-TCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred ccCCCCcEEECCCC-CCCCCChh-hcCCCCCCEEEeeCC--cCcccChhhhCCC-CCCEEeCcCCcCCccChhhcCCCCC
Confidence 56788888888887 66677776 457888888888888 7777887788887 8888888888888888888888888
Q ss_pred cEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 140 KCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 140 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
++|+|++ +.++.+|.+ +.++++|++|++.+|.+.
T Consensus 296 ~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 296 KYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred CEEECCC-CCCCccChh-hhcCCCccEEeCCCCccC
Confidence 8888888 477788876 888888888888888775
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=1.4e-10 Score=99.62 Aligned_cols=124 Identities=24% Similarity=0.271 Sum_probs=103.8
Q ss_pred cEEEEeCCccccCCCccCCccceEEEccCCcccccCC---CCCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968 22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE---VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98 (402)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 98 (402)
..+...+.++..+|... ..+++.|++++|.+..++. ...+++|++|++++| .+..+++..|..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence 45666777888887632 3499999999999998875 478999999999999 888876666999999999999999
Q ss_pred Cccccccc-cccccccccccEEEecCCCCccc-cHhhhcCCCCcEEEccCCCCcc
Q 045968 99 GQGRLKLP-VGMSVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRWTGALI 151 (402)
Q Consensus 99 ~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~ 151 (402)
.++.++ ..+..+. +|++|++++|.+..+ |..+..+++|++|++++| .+.
T Consensus 89 --~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 139 (192)
T 1w8a_A 89 --KIKEISNKMFLGLH-QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFN 139 (192)
T ss_dssp --CCCEECSSSSTTCT-TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBC
T ss_pred --cCCccCHHHhcCCC-CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC-Ccc
Confidence 899874 4578888 999999999999876 566889999999999994 444
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=1.7e-10 Score=107.70 Aligned_cols=264 Identities=14% Similarity=0.089 Sum_probs=152.7
Q ss_pred CccceEEEccCC-cccccCCCCC-CCccceEecccccccc--------------------ccchHHhcc--------CCC
Q 045968 40 WENVRRLSLMQN-QIETVSEVPT-CPHLLTLFLDFNQELE--------------------MIADGFFQL--------MPS 89 (402)
Q Consensus 40 ~~~l~~L~l~~~-~~~~~~~~~~-~~~L~~L~l~~~~~l~--------------------~~~~~~~~~--------l~~ 89 (402)
+.+++.|.+.++ ...++..... +++|++|++++| .+. .++..+|.+ |++
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcc-eeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 457888888765 1112222222 788999999887 555 466677888 899
Q ss_pred CCEEEccCCCcccccc-ccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCC---CccccchhhhhCCCCC
Q 045968 90 LKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTG---ALIRIPRQLISKFSRL 164 (402)
Q Consensus 90 L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~---~~~~~~~~~l~~l~~L 164 (402)
|+.+.+.+. ++.+ +.+|..+. +|+.+++++|.+..++.. +..+.++..+...... ....+...++.++.+|
T Consensus 103 L~~l~L~~~---i~~I~~~aF~~~~-~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 103 LEKVILSEK---IKNIEDAAFKGCD-NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CCC-CBCTT---CCEECTTTTTTCT-TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred CcEEECCcc---ccchhHHHhhcCc-ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 999988773 6666 45677788 999999998888777654 5556666666554311 1222333235566666
Q ss_pred c-EEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEe
Q 045968 165 R-VLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELK 243 (402)
Q Consensus 165 ~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~ 243 (402)
+ .+.+...... .......-....+++.+.+.+.-.. ..+......+..|+.+++.+++++++.
T Consensus 179 ~~~i~~~~~~~l--------------~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~l~~~~~~L~~l~L~~n~i~~I~ 242 (329)
T 3sb4_A 179 ETTIQVGAMGKL--------------EDEIMKAGLQPRDINFLTIEGKLDN--ADFKLIRDYMPNLVSLDISKTNATTIP 242 (329)
T ss_dssp EEEEEECTTCCH--------------HHHHHHTTCCGGGCSEEEEEECCCH--HHHHHHHHHCTTCCEEECTTBCCCEEC
T ss_pred ceeEEecCCCcH--------------HHHHhhcccCccccceEEEeeeecH--HHHHHHHHhcCCCeEEECCCCCcceec
Confidence 6 3443322111 1111111123455667777643211 112222223455555555544444332
Q ss_pred ccccccccCCCCccccccccEEecccccCcccCc--ccccCCCCC-EEeecCCcchHHHhhcCCCCCCccccCCCCCCCc
Q 045968 244 IDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT--FLVFAPNLK-SLDLDGCDAMEEIISVGKFAETPEMMGHISPFEN 320 (402)
Q Consensus 244 i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~ 320 (402)
-... . .+.+|+.|.+.++ ++.++ .|..+++|+ .|++.+ .++.+. ...+.+|++
T Consensus 243 ~~aF--------~-~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~-----------~~aF~~c~~ 298 (329)
T 3sb4_A 243 DFTF--------A-QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIE-----------FGAFMGCDN 298 (329)
T ss_dssp TTTT--------T-TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEEC-----------TTTTTTCTT
T ss_pred Hhhh--------h-CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEc-----------hhhhhCCcc
Confidence 2111 2 5778899988774 66664 677888898 888877 344442 247788889
Q ss_pred cceeecCccccccccccCcc-CCCCccEEE
Q 045968 321 LQRLNLEDLPNLESIYWKPL-PFTRLKEMA 349 (402)
Q Consensus 321 L~~L~l~~c~~l~~i~~~~~-~~~~L~~L~ 349 (402)
|+.|++.+ ..++.|..... .+++|+.+.
T Consensus 299 L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 299 LRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 99998865 45666655332 356666554
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=3.1e-10 Score=95.99 Aligned_cols=123 Identities=20% Similarity=0.299 Sum_probs=102.7
Q ss_pred EEEEeCCccccCCCccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968 23 FLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100 (402)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 100 (402)
-+.....++..+|. ...++++.|++++|.+..++.. ..+++|++|++++| .+..++...+..+++|++|++++|
T Consensus 11 ~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-- 86 (177)
T 2o6r_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-- 86 (177)
T ss_dssp EEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--
T ss_pred EEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC--
Confidence 45556667777763 2347999999999999987753 78999999999998 888888877899999999999999
Q ss_pred ccccccc-ccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCcc
Q 045968 101 GRLKLPV-GMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALI 151 (402)
Q Consensus 101 ~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~ 151 (402)
.++.++. .+..+. +|++|++++|.+..+|.. +..+++|++|++++| .+.
T Consensus 87 ~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLT-QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWD 137 (177)
T ss_dssp CCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred CccccCHHHhhCCc-ccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Cee
Confidence 8998865 467788 999999999999998876 578999999999995 444
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=8.4e-11 Score=121.38 Aligned_cols=152 Identities=18% Similarity=0.221 Sum_probs=95.7
Q ss_pred ccceEEEccCCcccccCCC-CCCCccceEecccc----ccccccchHHhccCCCCCEEEccCCCcccccccccccccccc
Q 045968 41 ENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFN----QELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSS 115 (402)
Q Consensus 41 ~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~----~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~ 115 (402)
..+++|++.++.+...+.. .....|+.+.+... ..+. +++..+..++.|+.|++++| .+..+|..+..+. +
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n--~l~~l~~~~~~l~-~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL--QIFNISANIFKYD-F 248 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS--CCSCCCGGGGGCC-S
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC--CCCCCChhhcCCC-C
Confidence 4688899988887765433 33344444443321 1233 44555899999999999999 8999988888888 9
Q ss_pred ccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhH
Q 045968 116 LELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQ 195 (402)
Q Consensus 116 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (402)
|++|+|++|.+..+|..+..+++|+.|+|++ +.++.+|.. +.++++|++|++.+|.+... ..
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~l----------------p~ 310 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAE-LGSCFQLKYFYFFDNMVTTL----------------PW 310 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSS-GGGGTTCSEEECCSSCCCCC----------------CS
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChh-hcCCCCCCEEECCCCCCCcc----------------Ch
Confidence 9999999999999999999999999999999 578899886 99999999999999987531 22
Q ss_pred hhhcCCCCceEEEEecCch
Q 045968 196 ELLGLKYLEVLELSLGSYH 214 (402)
Q Consensus 196 ~l~~l~~L~~L~l~~~~~~ 214 (402)
.+..+++|+.|+++++...
T Consensus 311 ~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 311 EFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp STTSCTTCCCEECTTSCCC
T ss_pred hhhcCCCccEEeCCCCccC
Confidence 4778999999999877654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=1.5e-11 Score=106.26 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=103.6
Q ss_pred ccceEecccc-ccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEE
Q 045968 64 HLLTLFLDFN-QELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCL 142 (402)
Q Consensus 64 ~L~~L~l~~~-~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 142 (402)
.++...+.+. ..+..++.. +..+++|++|++++| .++.+| .+..+. +|++|++++|.+..+|..+..+++|+.|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n--~l~~l~-~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTN--NIEKIS-SLSGME-NLRILSLGRNLIKKIENLDAVADTLEEL 98 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEE--EESCCC-CHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCC--CCcccc-ccccCC-CCCEEECCCCCcccccchhhcCCcCCEE
Confidence 3444444443 134555555 899999999999999 898888 788888 9999999999999999888888999999
Q ss_pred EccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCc
Q 045968 143 NLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSY 213 (402)
Q Consensus 143 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 213 (402)
++++ +.++.+|. +..+++|++|++.+|.+. ....+..+..+++|+.|.++++..
T Consensus 99 ~L~~-N~l~~l~~--~~~l~~L~~L~l~~N~i~--------------~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 99 WISY-NQIASLSG--IEKLVNLRVLYMSNNKIT--------------NWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEEE-EECCCHHH--HHHHHHSSEEEESEEECC--------------CHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ECcC-CcCCcCCc--cccCCCCCEEECCCCcCC--------------chhHHHHHhcCCCCCEEEecCCcc
Confidence 9999 57888873 889999999999999885 223345788899999999986644
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=1.2e-09 Score=92.16 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=46.4
Q ss_pred EEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccc-cccccccccEEEecC
Q 045968 45 RLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVG-MSVLGSSLELLDISC 123 (402)
Q Consensus 45 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~-~~~l~~~L~~L~L~~ 123 (402)
.++++++.+..+|... .++|++|++++| .+..+++..|..+++|++|++++| .++.+|.. |..+. +|++|++++
T Consensus 16 ~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~~~l~-~L~~L~L~~ 90 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGI-PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN--KLTAIPTGVFDKLT-QLTQLDLND 90 (174)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCT-TCCEEECCS
T ss_pred EEEeCCCCCCccCCCc-CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC--CCCccChhHhCCcc-hhhEEECCC
Confidence 4555555555444322 145555555544 444443333455555555555555 45544332 23444 555555555
Q ss_pred CCCccccHh-hhcCCCCcEEEccC
Q 045968 124 TGITELPEE-LKKLVNLKCLNLRW 146 (402)
Q Consensus 124 ~~l~~lp~~-i~~l~~L~~L~l~~ 146 (402)
|.+..+|.. +..+++|+.|++.+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CccceeCHHHhccccCCCEEEeCC
Confidence 555544443 44445555555544
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=1.2e-09 Score=91.87 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=46.5
Q ss_pred eEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccc-cccccccccEEEec
Q 045968 44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVG-MSVLGSSLELLDIS 122 (402)
Q Consensus 44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~-~~~l~~~L~~L~L~ 122 (402)
+.++++++.++.+|... .++|++|++++| .+..+++..|..+++|++|++++| .++.++.. |..+. +|++|+++
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~f~~l~-~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN--QLTVLPAGVFDKLT-QLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCT-TCCEEECC
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC--CcCccChhhccCCC-CCCEEECC
Confidence 34555555555544322 244555555544 444443333455555555555555 44444322 33444 55555555
Q ss_pred CCCCccccHh-hhcCCCCcEEEccC
Q 045968 123 CTGITELPEE-LKKLVNLKCLNLRW 146 (402)
Q Consensus 123 ~~~l~~lp~~-i~~l~~L~~L~l~~ 146 (402)
+|.+..+|.. +..+++|++|++.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCC
Confidence 5555444432 44445555555544
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=1.1e-09 Score=92.29 Aligned_cols=103 Identities=22% Similarity=0.267 Sum_probs=87.4
Q ss_pred cceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecCCCCccccHh-hhcCCCCcEE
Q 045968 65 LLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCL 142 (402)
Q Consensus 65 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L 142 (402)
-+.++++++ .+..+|.. + .++|++|++++| .++.+ |..|..+. +|++|++++|++..+|.. +..+++|++|
T Consensus 14 ~~~l~~~~n-~l~~iP~~-~--~~~L~~L~Ls~N--~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAG-I--PTDKQRLWLNNN--QITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SSEEECCSS-CCSSCCSC-C--CTTCSEEECCSS--CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcEEEeCCC-CCCccCCC-c--CCCCcEEEeCCC--CccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 467888877 77888875 3 388999999999 88887 56788888 999999999999999876 5789999999
Q ss_pred EccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 143 NLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 143 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
++++ +.++.+|...+.++++|++|++.+|.+.
T Consensus 87 ~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLND-NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCC-CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9999 6888888766889999999999998775
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=1.2e-09 Score=91.75 Aligned_cols=104 Identities=25% Similarity=0.286 Sum_probs=86.2
Q ss_pred ccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecCCCCccccHh-hhcCCCCcE
Q 045968 64 HLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKC 141 (402)
Q Consensus 64 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~ 141 (402)
..+.++++++ .+..+|.. + .++|++|++++| .++.+ |..|..+. +|++|++++|.+..+|.. +..+++|++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~-~--~~~l~~L~L~~N--~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTG-I--PTTTQVLYLYDN--QITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTTS-CCSSCCSC-C--CTTCSEEECCSS--CCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEeCCC-CcCccCcc-C--CCCCcEEEcCCC--cCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCE
Confidence 4578888877 77788765 2 378999999999 88887 56678888 999999999999988776 578999999
Q ss_pred EEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 142 LNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 142 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
|++++ +.++.++...+.++++|++|++.+|.+.
T Consensus 83 L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLND-NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCS-SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCC-CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99998 6888888766888999999999988764
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=6.2e-08 Score=92.76 Aligned_cols=254 Identities=16% Similarity=0.147 Sum_probs=160.8
Q ss_pred ccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-cccccccccccc
Q 045968 41 ENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLE 117 (402)
Q Consensus 41 ~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~ 117 (402)
..++.+.+.. .++.++.. .. .+|+.+.+.. .+..++..+|.++ +|+.+.+.. .++.+ ..+|..+. +|+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~-~~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~---~l~~I~~~aF~~c~-~L~ 183 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRN-SQIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS---TLEQLKEDIFYYCY-NLK 183 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTT-CCCSEEECCT--TCCEECTTTTTTC-CCCEEECCT---TCCEECSSTTTTCT-TCC
T ss_pred CCccEEEECC-ccCEehHhhccc-CCccEEEeCC--CccEECHHhcCCC-CceEEEeCC---CccEehHHHhhCcc-cCC
Confidence 4566666643 34445433 34 4799998875 4788888888886 699999986 47777 46788888 999
Q ss_pred EEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhh
Q 045968 118 LLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQEL 197 (402)
Q Consensus 118 ~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (402)
.+++.+|++..++.....+.+|+.+.+.. .++.++..++.++++|+.+.+..+- ... ... .+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l-~~I------------~~~---aF 245 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENV-STI------------GQE---AF 245 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTC-CEE------------CTT---TT
T ss_pred eeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCc-cCc------------ccc---cc
Confidence 99999999999988765679999999975 5888888889999999999987532 110 111 12
Q ss_pred hcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcc---
Q 045968 198 LGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLK--- 274 (402)
Q Consensus 198 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--- 274 (402)
.. .+|+.+.+.. +++++.-... . .+++|+.+.+.++ .+.
T Consensus 246 ~~-~~L~~i~lp~---------------------------~i~~I~~~aF--------~-~c~~L~~l~l~~~-~~~~~~ 287 (401)
T 4fdw_A 246 RE-SGITTVKLPN---------------------------GVTNIASRAF--------Y-YCPELAEVTTYGS-TFNDDP 287 (401)
T ss_dssp TT-CCCSEEEEET---------------------------TCCEECTTTT--------T-TCTTCCEEEEESS-CCCCCT
T ss_pred cc-CCccEEEeCC---------------------------CccEEChhHh--------h-CCCCCCEEEeCCc-cccCCc
Confidence 22 4677777741 1222211110 1 4666777766554 121
Q ss_pred --cC--cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCcc-CCCCccEEE
Q 045968 275 --DV--TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPL-PFTRLKEMA 349 (402)
Q Consensus 275 --~l--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~-~~~~L~~L~ 349 (402)
.+ ..|..+++|+.+.+.+ .++.+.. ..+.+|++|+.+.|.. +++.|..... .| +|+.+.
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~-----------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~ 351 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE--SIRILGQ-----------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVK 351 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT--TCCEECT-----------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEE
T ss_pred ccEECHHHhhCCccCCeEEeCC--ceEEEhh-----------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEE
Confidence 22 2566677788877764 2444322 4666777888887753 4666654333 25 788888
Q ss_pred ecCCCCCCCCCCCCCCCC-CCeeEEEcc
Q 045968 350 VLGCDQLEKLPVDSNSAK-ERKFVIRGE 376 (402)
Q Consensus 350 i~~c~~L~~lp~~~~~~~-~~~~~~~~~ 376 (402)
+.+. .+..++.+..... .++..+..+
T Consensus 352 l~~n-~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 352 VEGT-TPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp ECCS-SCCBCCCSSCCCSCTTCCEEEEC
T ss_pred EcCC-CCcccccccccCCCCCccEEEeC
Confidence 8664 4555554433322 344455544
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.85 E-value=2.9e-07 Score=88.11 Aligned_cols=216 Identities=12% Similarity=0.142 Sum_probs=133.2
Q ss_pred cceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEE
Q 045968 42 NVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120 (402)
Q Consensus 42 ~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~ 120 (402)
+|+.+.+..+ ++.++.. ..-.+|+.+.+.. .+..++..+|.+|++|+.+++.++ .++.++....... +|+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n--~l~~I~~~aF~~~-~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT--KITKLPASTFVYA-GIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS--CCSEECTTTTTTC-CCSEEE
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC--CccEehHHHhhCcccCCeeecCCC--cceEechhhEeec-ccCEEE
Confidence 5777777654 5555443 1224688887774 567777777888888888888887 7777754433355 888888
Q ss_pred ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968 121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG 199 (402)
Q Consensus 121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (402)
+.. .+..++.. +.++++|+.+++.. .++.++..++.+ .+|+.+.+... ... -.-..+..
T Consensus 210 lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~~---------------I~~~aF~~ 269 (401)
T 4fdw_A 210 LPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VTN---------------IASRAFYY 269 (401)
T ss_dssp CCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CCE---------------ECTTTTTT
T ss_pred eCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-ccE---------------EChhHhhC
Confidence 874 46666554 67788888888875 467777766766 67888877432 211 11223556
Q ss_pred CCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCc--
Q 045968 200 LKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT-- 277 (402)
Q Consensus 200 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-- 277 (402)
+++|+.+.+..+..... .+..+.-. ... .|++|+.+.+.+ .++.++
T Consensus 270 c~~L~~l~l~~~~~~~~---------------------~~~~I~~~--------aF~-~c~~L~~l~l~~--~i~~I~~~ 317 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDD---------------------PEAMIHPY--------CLE-GCPKLARFEIPE--SIRILGQG 317 (401)
T ss_dssp CTTCCEEEEESSCCCCC---------------------TTCEECTT--------TTT-TCTTCCEECCCT--TCCEECTT
T ss_pred CCCCCEEEeCCccccCC---------------------cccEECHH--------Hhh-CCccCCeEEeCC--ceEEEhhh
Confidence 77777777763221100 01111100 011 577888888864 466653
Q ss_pred ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcc
Q 045968 278 FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDL 329 (402)
Q Consensus 278 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 329 (402)
.|..+++|+.+.|..+ ++.+. ...+..+ +|+.|.+.+.
T Consensus 318 aF~~c~~L~~l~lp~~--l~~I~-----------~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN--VTQIN-----------FSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTTCCSCCEEEECTT--CCEEC-----------TTSSSSS-CCCEEEECCS
T ss_pred hhcCCCCccEEEECcc--ccEEc-----------HHhCCCC-CCCEEEEcCC
Confidence 5667788888888653 33332 2356667 8888888764
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.74 E-value=9.4e-08 Score=91.39 Aligned_cols=124 Identities=15% Similarity=0.236 Sum_probs=57.9
Q ss_pred ccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-cccccccc
Q 045968 37 VKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLG 113 (402)
Q Consensus 37 ~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~ 113 (402)
+.++.+|+.+.+.. .++.+... ..|.+|+.+.+.. .+..++..+|.+|.+|+.+.+..+ +..+ ..+|..+.
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~---l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLM---LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTT---CCEECTTTTTTCC
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCc---eeeecceeeeccc
Confidence 44555666666542 24444433 4556666666543 244555555666666555544332 2222 11222221
Q ss_pred ccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeee
Q 045968 114 SSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFA 171 (402)
Q Consensus 114 ~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 171 (402)
.+.. .+. .....++. .+..+.+|+.+.+.. .+..++..++.++.+|+.+.+..
T Consensus 141 -~~~~-~~~-~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 141 -FKEI-TIP-EGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp -CSEE-ECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred -cccc-ccC-ccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC
Confidence 1111 111 11112221 255666777777654 34455555566666666666543
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=3.1e-08 Score=92.96 Aligned_cols=102 Identities=17% Similarity=0.238 Sum_probs=65.3
Q ss_pred EEEccCC-cccccCCCCCCCccceEeccc-cccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEe
Q 045968 45 RLSLMQN-QIETVSEVPTCPHLLTLFLDF-NQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDI 121 (402)
Q Consensus 45 ~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L 121 (402)
.++.+++ .+..+|.+..+++|++|++++ | .+..+++..|..+++|++|+|++| .++.+ |..|..+. +|++|+|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~l~-~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS--GLRFVAPDAFHFTP-RLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS--CCCEECTTGGGSCS-CCCEEEC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC--ccceeCHHHhcCCc-CCCEEeC
Confidence 3455665 666666655666777777775 4 666666555777777777777777 66666 34556666 7777777
Q ss_pred cCCCCccccHhhhcCCCCcEEEccCCCCcc
Q 045968 122 SCTGITELPEELKKLVNLKCLNLRWTGALI 151 (402)
Q Consensus 122 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~ 151 (402)
++|.+..+|..+....+|+.|++.+ +.+.
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~-N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSG-NPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCS-SCCC
T ss_pred CCCccceeCHHHcccCCceEEEeeC-CCcc
Confidence 7777776665544333477777766 3443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.63 E-value=2.4e-08 Score=94.67 Aligned_cols=108 Identities=12% Similarity=0.065 Sum_probs=50.8
Q ss_pred CCccceEeccccccccccchHHhc-----cCCCCCEEEccCCCcccccc-cccc-ccccccccEEEecCCCCccccH---
Q 045968 62 CPHLLTLFLDFNQELEMIADGFFQ-----LMPSLKVLKMSNCGQGRLKL-PVGM-SVLGSSLELLDISCTGITELPE--- 131 (402)
Q Consensus 62 ~~~L~~L~l~~~~~l~~~~~~~~~-----~l~~L~~L~l~~~~~~i~~l-~~~~-~~l~~~L~~L~L~~~~l~~lp~--- 131 (402)
.++|+.|++++| .+.......+. ..++|++|++++| .+... ...+ ..+. +|++|++++|.+...+.
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC--QLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC--CCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC--CCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHH
Confidence 345666666655 34332222121 1246666666666 44421 1112 2233 56666666665543211
Q ss_pred --hh-hcCCCCcEEEccCCCCccccch----hhhhCCCCCcEEEeeeecc
Q 045968 132 --EL-KKLVNLKCLNLRWTGALIRIPR----QLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 132 --~i-~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~ 174 (402)
.+ ...++|++|++++| .++.... .++..+++|++|++.+|.+
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l 195 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195 (372)
T ss_dssp HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSC
T ss_pred HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCC
Confidence 11 13455666666663 4433111 1134566666666666655
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=6.4e-08 Score=90.74 Aligned_cols=103 Identities=20% Similarity=0.183 Sum_probs=86.5
Q ss_pred ceEeccccccccccchHHhccCCCCCEEEccC-CCccccccc-cccccccccccEEEecCCCCccccH-hhhcCCCCcEE
Q 045968 66 LTLFLDFNQELEMIADGFFQLMPSLKVLKMSN-CGQGRLKLP-VGMSVLGSSLELLDISCTGITELPE-ELKKLVNLKCL 142 (402)
Q Consensus 66 ~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~-~~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L 142 (402)
..++.+++..+..+|. +..+++|++|+|++ | .+..++ ..|..+. +|++|+|++|.+..++. .+.++++|+.|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n--~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ--HLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS--SCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC--CCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 3456665436788888 89999999999996 8 899885 5688888 99999999999998866 47899999999
Q ss_pred EccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 143 NLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 143 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
+|++ +.++.+|...+..++ |++|++.+|.+.
T Consensus 86 ~l~~-N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSF-NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCS-SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eCCC-CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999 788999887566665 999999998875
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=6.3e-08 Score=91.80 Aligned_cols=192 Identities=12% Similarity=0.060 Sum_probs=102.7
Q ss_pred CCCccceEecccccc-ccccchHHhccCCCCCEEEccCCCcccccc-ccccccc-----cccccEEEecCCCCcccc--H
Q 045968 61 TCPHLLTLFLDFNQE-LEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVL-----GSSLELLDISCTGITELP--E 131 (402)
Q Consensus 61 ~~~~L~~L~l~~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l-----~~~L~~L~L~~~~l~~lp--~ 131 (402)
.++..+.+++.+|-. +.+ ..-.-.-.++|++|++++| .++.. ...+... . +|++|++++|.+.... .
T Consensus 45 ~~~~~~~lnl~~cl~e~~~-~~l~~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~ 120 (372)
T 3un9_A 45 VLPPSELLDHLFFHYEFQN-QRFSAEVLSSLRQLNLAGV--RMTPVKCTVVAAVLGSGRH-ALDEVNLASCQLDPAGLRT 120 (372)
T ss_dssp CSCHHHHHHHHHHHHHHHT-HHHHHHHHTTCCEEECTTS--CCCHHHHHHHHHHHSSCSS-CEEEEECTTCCCCHHHHHH
T ss_pred CCChhhhHHHHHHHHHhcC-HHHHHHHHhhCCEEEecCC--CCCHHHHHHHHHHHhhCCC-CceEEEecCCCCCHHHHHH
Confidence 445556666666521 111 1110122467888888888 66642 2222222 3 7888888888775321 1
Q ss_pred hhhcCCCCcEEEccCCCCccccchhhh-----hCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceE
Q 045968 132 ELKKLVNLKCLNLRWTGALIRIPRQLI-----SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVL 206 (402)
Q Consensus 132 ~i~~l~~L~~L~l~~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 206 (402)
....+.+|++|++++| .++......+ ...++|++|++.+|.+.... .......+...++|++|
T Consensus 121 l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~-----------~~~l~~~L~~~~~L~~L 188 (372)
T 3un9_A 121 LLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG-----------VAVLMEGLAGNTSVTHL 188 (372)
T ss_dssp THHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH-----------HHHHHHHHHTCSSCCEE
T ss_pred HHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH-----------HHHHHHHHhcCCCcCEE
Confidence 2334567888888884 6655333223 24678888888888764210 11123345677888888
Q ss_pred EEEecCchhh--HhhhhhhhhcccceeeEeccceeeeEeccccccccCCCC-ccccccccEEecccccCccc
Q 045968 207 ELSLGSYHAL--QILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRRE-PFVFRNLHRVTMVLCHKLKD 275 (402)
Q Consensus 207 ~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~ 275 (402)
+++++..... ..+.......++|+.|++++|.+...... .+.. ....++|++|++++| .+++
T Consensus 189 ~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~------~l~~~L~~~~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL------ALARAAREHPSLELLHLYFN-ELSS 253 (372)
T ss_dssp ECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH------HHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred eCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH------HHHHHHHhCCCCCEEeccCC-CCCH
Confidence 8887655432 22333333334455555544433211100 0000 004577888888887 5655
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=8.6e-08 Score=80.02 Aligned_cols=87 Identities=9% Similarity=0.077 Sum_probs=53.9
Q ss_pred ccccEEecccccCccc--CcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCC----CCccceeecCcccccc
Q 045968 260 RNLHRVTMVLCHKLKD--VTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISP----FENLQRLNLEDLPNLE 333 (402)
Q Consensus 260 ~~L~~L~l~~~~~l~~--l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~----l~~L~~L~l~~c~~l~ 333 (402)
.+|+.|++++| .+++ +..+..+++|++|++++|..+++... ..+.. .++|++|+|++|++++
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-----------~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-----------ERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-----------HHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-----------HHHHhcccccCCCCEEEcCCCCcCC
Confidence 35777777777 3655 34556677777777777776666432 12222 3467777777777664
Q ss_pred ccccC-ccCCCCccEEEecCCCCCCC
Q 045968 334 SIYWK-PLPFTRLKEMAVLGCDQLEK 358 (402)
Q Consensus 334 ~i~~~-~~~~~~L~~L~i~~c~~L~~ 358 (402)
+-... ...+++|++|++++|++++.
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 43221 12467777777777777764
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.37 E-value=8.1e-06 Score=77.83 Aligned_cols=126 Identities=12% Similarity=0.201 Sum_probs=84.1
Q ss_pred ccCCc-cceEEEccCCcccccCCC--CCCCccceEecccc--ccccccchHHhccCCCCCEEEccCCCcccccc-ccccc
Q 045968 37 VKGWE-NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFN--QELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMS 110 (402)
Q Consensus 37 ~~~~~-~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~--~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~ 110 (402)
+.+++ .|+.+.+..+ ++.+... ..|.+|+.+.+..+ ..+..++..+|..|.+|+.+.+..+ ++.+ ...|.
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~---~~~I~~~aF~ 134 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS---VTEIDSEAFH 134 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT---CSEECTTTTT
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc---cceehhhhhh
Confidence 44553 5888888643 5666544 67899999988765 2477788888999999988877664 5555 34566
Q ss_pred cccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeee
Q 045968 111 VLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFA 171 (402)
Q Consensus 111 ~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 171 (402)
.+. +|+.+.+.. .+..++. .+..+.+|+.+.+.. .++.++..++.. .+|+.+.+..
T Consensus 135 ~c~-~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 135 HCE-ELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp TCT-TCCEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECT
T ss_pred hhc-ccccccccc-eeeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECC
Confidence 677 888888865 3344433 366777888888765 456666554543 4677776643
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.31 E-value=1.3e-06 Score=82.11 Aligned_cols=62 Identities=26% Similarity=0.355 Sum_probs=35.6
Q ss_pred ccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhh--cCCCCceE
Q 045968 129 LPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELL--GLKYLEVL 206 (402)
Q Consensus 129 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L 206 (402)
+...+..+++|+.|++.+|..+ .++. + .+++|++|.+..|.+. ...+..+. .+|+|+.|
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~---------------~~~l~~l~~~~lp~L~~L 224 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLP---------------DSVVEDILGSDLPNLEKL 224 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCC---------------HHHHHHHHHSBCTTCCEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCC---------------hHHHHHHHHccCCCCcEE
Confidence 3344566677777777764222 2332 2 2667777777766552 23334443 56777777
Q ss_pred EEE
Q 045968 207 ELS 209 (402)
Q Consensus 207 ~l~ 209 (402)
.++
T Consensus 225 ~L~ 227 (362)
T 2ra8_A 225 VLY 227 (362)
T ss_dssp EEE
T ss_pred EEe
Confidence 775
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.29 E-value=2.8e-05 Score=74.08 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=82.2
Q ss_pred ccccCCC--CCCC-ccceEeccccccccccchHHhccCCCCCEEEccCCC-cccccc-ccccccccccccEEEecCCCCc
Q 045968 53 IETVSEV--PTCP-HLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG-QGRLKL-PVGMSVLGSSLELLDISCTGIT 127 (402)
Q Consensus 53 ~~~~~~~--~~~~-~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~i~~l-~~~~~~l~~~L~~L~L~~~~l~ 127 (402)
++.+.+. ..+. .|+.+.+.. .+..++..+|.+|.+|+.+.+..+. -.++.+ ..+|..+. +|+.+.+.. .+.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~-~L~~i~~~~-~~~ 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCS-ELTDIPILD-SVT 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCT-TCCBCGGGT-TCS
T ss_pred eeEcCHhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcc-cceeeccCC-ccc
Confidence 3445443 3453 589998874 5788888889999999999998751 136666 45677777 888776655 355
Q ss_pred cccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeee
Q 045968 128 ELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI 172 (402)
Q Consensus 128 ~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 172 (402)
.++.. +..+.+|+.+.+.. .+..++..++..+.+|+.+.+...
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred eehhhhhhhhcccccccccc--eeeeecccceecccccccccccce
Confidence 55544 67889999999975 566777767889999999987653
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=1.9e-06 Score=71.82 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=35.7
Q ss_pred CCCEEEccCCCcccccc-ccccccccccccEEEecCC-CCcccc-HhhhcC----CCCcEEEccCCCCccccchhhhhCC
Q 045968 89 SLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCT-GITELP-EELKKL----VNLKCLNLRWTGALIRIPRQLISKF 161 (402)
Q Consensus 89 ~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~-~l~~lp-~~i~~l----~~L~~L~l~~~~~~~~~~~~~l~~l 161 (402)
+|++|++++| .++.. -..+..+. +|++|+|++| .++.-. ..+..+ ++|++|++++|..+++-....+.++
T Consensus 62 ~L~~LDLs~~--~Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDS--CIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESC--CCCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCC--CccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 3555555555 44321 12233344 5555555554 233211 112221 2355555555554544333234445
Q ss_pred CCCcEEEeeeecc
Q 045968 162 SRLRVLRMFAIGY 174 (402)
Q Consensus 162 ~~L~~L~l~~~~~ 174 (402)
++|++|++.+|..
T Consensus 139 ~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 139 RNLKYLFLSDLPG 151 (176)
T ss_dssp TTCCEEEEESCTT
T ss_pred CCCCEEECCCCCC
Confidence 5555555555543
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.19 E-value=2.1e-05 Score=74.99 Aligned_cols=104 Identities=14% Similarity=0.145 Sum_probs=75.2
Q ss_pred CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecCCCCccccHhhhcCCC
Q 045968 60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTGITELPEELKKLVN 138 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~ 138 (402)
..|++|+.+.+.. .+..++..+|..|.+|+.+.+..+ ++.+ ...|..+. .|+.+.+..+ ...+........+
T Consensus 159 ~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~---~~~I~~~~F~~~~-~L~~i~~~~~-~~~i~~~~~~~~~ 231 (394)
T 4fs7_A 159 ATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN---LKIIRDYCFAECI-LLENMEFPNS-LYYLGDFALSKTG 231 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT---CCEECTTTTTTCT-TCCBCCCCTT-CCEECTTTTTTCC
T ss_pred cccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC---ceEeCchhhcccc-ccceeecCCC-ceEeehhhcccCC
Confidence 6788999999875 356678788999999999998765 5555 35566677 8887777654 2233344455678
Q ss_pred CcEEEccCCCCccccchhhhhCCCCCcEEEeeee
Q 045968 139 LKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI 172 (402)
Q Consensus 139 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 172 (402)
|+.+.+.. .++.++..++.++.+|+.+.+...
T Consensus 232 l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 232 VKNIIIPD--SFTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CCEEEECT--TCCEECSSTTTTCSSCCEEEECCT
T ss_pred CceEEECC--CceecccccccccccceeEEcCCC
Confidence 89888865 456666666888999999888654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=6.1e-06 Score=77.61 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=20.7
Q ss_pred ccccccEEecccccCcccC--ccccc-CCCCCEEeecCCc
Q 045968 258 VFRNLHRVTMVLCHKLKDV--TFLVF-APNLKSLDLDGCD 294 (402)
Q Consensus 258 ~~~~L~~L~l~~~~~l~~l--~~~~~-l~~L~~L~l~~c~ 294 (402)
.+++|+.|++++| .+++- ..+.. + ...+++++..
T Consensus 305 ~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 305 KIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 6788999999887 56552 22222 2 3556776643
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.94 E-value=0.00045 Score=65.16 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=61.6
Q ss_pred ccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccc
Q 045968 37 VKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGS 114 (402)
Q Consensus 37 ~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~ 114 (402)
.....+|+.+.+.. .++.++.. ..|.+|+.+.+.. .+..++..+|.++ +|+.+.+..+ ++.+........
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~~---l~~I~~~aF~~~- 113 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGMER---VKKFGDYVFQGT- 113 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECTT---CCEECTTTTTTC-
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCce---eeEeccceeccC-
Confidence 33445566666642 34444433 5566666666653 3555666666666 4555555432 444432222223
Q ss_pred cccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeee
Q 045968 115 SLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFA 171 (402)
Q Consensus 115 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 171 (402)
+|+.+.+..+ +..+........+|+.+.+.. .++.+...++..+.+++.+.+..
T Consensus 114 ~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 114 DLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECT
T ss_pred CcccccCCCc-cccccccccccceeeeeeccc--eeeccccchhccccccccccccc
Confidence 5666666542 333333322223455555443 34444444456666666665543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.94 E-value=1.6e-05 Score=67.33 Aligned_cols=111 Identities=15% Similarity=0.100 Sum_probs=56.6
Q ss_pred CCCCccceEeccccccccccc----hHHhccCCCCCEEEccCCCccccc-----cccccccccccccEEEecCCCCcc--
Q 045968 60 PTCPHLLTLFLDFNQELEMIA----DGFFQLMPSLKVLKMSNCGQGRLK-----LPVGMSVLGSSLELLDISCTGITE-- 128 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~i~~-----l~~~~~~l~~~L~~L~L~~~~l~~-- 128 (402)
...+.|++|++++|..+.+.. ...+...++|++|++++| .+.. +...+.... +|++|+|++|.+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n--~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT--RSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSG 109 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS--CCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC--CCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHH
Confidence 445666666666552332211 122455566666666666 4442 222233334 66666666666653
Q ss_pred ---ccHhhhcCCCCcEEEc--cCCCCccccch----hhhhCCCCCcEEEeeeecc
Q 045968 129 ---LPEELKKLVNLKCLNL--RWTGALIRIPR----QLISKFSRLRVLRMFAIGY 174 (402)
Q Consensus 129 ---lp~~i~~l~~L~~L~l--~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~ 174 (402)
+...+...++|++|++ .+ +.++.... ..+...++|++|++.+|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2333455556666666 44 34443111 1244456666666666554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.77 E-value=2.4e-05 Score=66.21 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=82.5
Q ss_pred ccCCccceEEEccCC-cccc-----cC-CCCCCCccceEeccccccccccc----hHHhccCCCCCEEEccCCCccccc-
Q 045968 37 VKGWENVRRLSLMQN-QIET-----VS-EVPTCPHLLTLFLDFNQELEMIA----DGFFQLMPSLKVLKMSNCGQGRLK- 104 (402)
Q Consensus 37 ~~~~~~l~~L~l~~~-~~~~-----~~-~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~i~~- 104 (402)
+...+.|+.|++++| .+.. +. .....++|++|++++| .+.+.. ...+...+.|++|++++| .+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N--~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN--FISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS--CCCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC--cCCHH
Confidence 445678999999998 7764 21 2266799999999999 665532 233667789999999999 7764
Q ss_pred ----cccccccccccccEEEe--cCCCCcc-----ccHhhhcCCCCcEEEccCCCCccc
Q 045968 105 ----LPVGMSVLGSSLELLDI--SCTGITE-----LPEELKKLVNLKCLNLRWTGALIR 152 (402)
Q Consensus 105 ----l~~~~~~l~~~L~~L~L--~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~ 152 (402)
+...+.... +|++|++ ++|.+.. +...+...++|++|++++| .+..
T Consensus 109 g~~~l~~~L~~n~-~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~ 165 (185)
T 1io0_A 109 GILALVEALQSNT-SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGP 165 (185)
T ss_dssp HHHHHHHGGGGCS-SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHH
T ss_pred HHHHHHHHHHhCC-CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCCh
Confidence 345566666 9999999 8898863 4445677799999999984 5543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=8.8e-05 Score=66.35 Aligned_cols=80 Identities=23% Similarity=0.256 Sum_probs=44.1
Q ss_pred ccCCCCCEEEccCCCccccccc---cccccccccccEEEecCCCCccccHhhhcCC--CCcEEEccCCCCccccc-----
Q 045968 85 QLMPSLKVLKMSNCGQGRLKLP---VGMSVLGSSLELLDISCTGITELPEELKKLV--NLKCLNLRWTGALIRIP----- 154 (402)
Q Consensus 85 ~~l~~L~~L~l~~~~~~i~~l~---~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~~----- 154 (402)
..+++|+.|++++| .++.++ ..+..++ +|++|+|++|.+..+ ..+..+. +|++|++.+|..-..+|
T Consensus 167 ~~l~~L~~L~Ls~N--~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNN--RLYRLDDMSSIVQKAP-NLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTS--CCCCCGGGTTHHHHST-TCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCC--CCCCCccchhHHhhCC-CCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 45667777777777 565542 3344555 777777777766655 2233333 66777776643222222
Q ss_pred -hhhhhCCCCCcEEE
Q 045968 155 -RQLISKFSRLRVLR 168 (402)
Q Consensus 155 -~~~l~~l~~L~~L~ 168 (402)
..++..+++|+.|+
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 12345566666664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=0.00033 Score=62.61 Aligned_cols=61 Identities=25% Similarity=0.207 Sum_probs=42.4
Q ss_pred cccccccEEEecCCCCcccc---HhhhcCCCCcEEEccCCCCccccchhhhhCCC--CCcEEEeeeeccc
Q 045968 111 VLGSSLELLDISCTGITELP---EELKKLVNLKCLNLRWTGALIRIPRQLISKFS--RLRVLRMFAIGYD 175 (402)
Q Consensus 111 ~l~~~L~~L~L~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~ 175 (402)
.++ +|+.|+|++|.+..++ ..+..+++|+.|+|++ |.++.+.. +..+. +|++|.+.+|.+.
T Consensus 168 ~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE--LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG--GGGGTTSCCSEEECTTSTTG
T ss_pred hCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh--hhhcccCCcceEEccCCcCc
Confidence 344 8888888888776543 4566788888888888 56666532 33333 8888888887764
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.00 E-value=0.0026 Score=59.84 Aligned_cols=103 Identities=13% Similarity=0.151 Sum_probs=56.5
Q ss_pred CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecCCCCccccHh-hhcCC
Q 045968 60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLV 137 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~ 137 (402)
..+.+++.+.+.. .+..++...|..+..|+.+.+..+ ++.+ ...|..+. +|+.+.+.. .+..++.. +..+.
T Consensus 214 ~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~---v~~I~~~aF~~~~-~l~~i~l~~-~i~~i~~~aF~~c~ 286 (379)
T 4h09_A 214 SYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN---VTSIGSFLLQNCT-ALKTLNFYA-KVKTVPYLLCSGCS 286 (379)
T ss_dssp TTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT---CCEECTTTTTTCT-TCCEEEECC-CCSEECTTTTTTCT
T ss_pred ccccccceeeecc--ceeEEccccccCCccceEEEcCCC---ccEeCccccceee-hhccccccc-cceecccccccccc
Confidence 4455666665543 344455555666666666666543 4444 23444455 666666643 24444332 45566
Q ss_pred CCcEEEccCCCCccccchhhhhCCCCCcEEEee
Q 045968 138 NLKCLNLRWTGALIRIPRQLISKFSRLRVLRMF 170 (402)
Q Consensus 138 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 170 (402)
+|+.+.+.. +.++.++..++.++.+|+.+.+.
T Consensus 287 ~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 287 NLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCCEEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccc-cccceehhhhhcCCCCCCEEEcC
Confidence 666666655 45555655556666666666654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.14 E-value=0.045 Score=46.19 Aligned_cols=84 Identities=10% Similarity=-0.034 Sum_probs=41.1
Q ss_pred CCCCccceEeccccccccccc----hHHhccCCCCCEEEccCCCccccc-----cccccccccccccEEEecCCCCcc--
Q 045968 60 PTCPHLLTLFLDFNQELEMIA----DGFFQLMPSLKVLKMSNCGQGRLK-----LPVGMSVLGSSLELLDISCTGITE-- 128 (402)
Q Consensus 60 ~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~i~~-----l~~~~~~l~~~L~~L~L~~~~l~~-- 128 (402)
..-+.|++|++.++..+.+-. ...+..-..|+.|+|++| .+.+ +...+.... .|++|+|++|.|..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n--~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT--AISDSEARGLIELIETSP-SLRVLNVESNFLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS--CCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC--CCChHHHHHHHHHHhcCC-ccCeEecCCCcCCHHH
Confidence 344556666666532333311 122444556666666666 4542 122233334 66666666666542
Q ss_pred ---ccHhhhcCCCCcEEEccC
Q 045968 129 ---LPEELKKLVNLKCLNLRW 146 (402)
Q Consensus 129 ---lp~~i~~l~~L~~L~l~~ 146 (402)
+-..+..-..|++|+|.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHhhCCceeEEECCC
Confidence 112233334566666654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.03 E-value=0.033 Score=43.68 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=26.8
Q ss_pred EEEccCCCcccc--ccccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccC
Q 045968 92 VLKMSNCGQGRL--KLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRW 146 (402)
Q Consensus 92 ~L~l~~~~~~i~--~l~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~ 146 (402)
.++.++. .++ .+|..+. ++|++|+|++|.+..+|.. +..+++|+.|+|.+
T Consensus 12 ~v~Cs~~--~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 12 LVDCGRR--GLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp EEECCSS--CCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred EEEeCCC--CCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 3444444 444 5554332 2566666666666666554 44555666666655
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.37 E-value=0.05 Score=42.62 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=46.1
Q ss_pred cEEEecCCCCc--cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968 117 ELLDISCTGIT--ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD 175 (402)
Q Consensus 117 ~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 175 (402)
..++-++++++ .+|..+ -.+|++|+|++ |.++.++.+++..+++|++|++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCee
Confidence 36677888888 888653 34799999999 7999999888899999999999988663
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.38 E-value=0.28 Score=41.28 Aligned_cols=120 Identities=13% Similarity=0.042 Sum_probs=73.1
Q ss_pred HHhccCCCCCEEEccCCCcccc-----ccccccccccccccEEEecCCCCcc-----ccHhhhcCCCCcEEEccCCCCcc
Q 045968 82 GFFQLMPSLKVLKMSNCGQGRL-----KLPVGMSVLGSSLELLDISCTGITE-----LPEELKKLVNLKCLNLRWTGALI 151 (402)
Q Consensus 82 ~~~~~l~~L~~L~l~~~~~~i~-----~l~~~~~~l~~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~ 151 (402)
.++..-+.|+.|+++++. .+. .+...+.... .|+.|+|++|.+.. +...+..=+.|++|+|.. +.++
T Consensus 35 ~ll~~n~~L~~L~L~~nn-~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig 111 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMK-RVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLT 111 (197)
T ss_dssp HHHTTCSSCCEEECTTCC-SSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCC
T ss_pred HHHhcCCCccEEECCCCC-CCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCC
Confidence 335667789999998742 343 2344455556 89999999998863 333455567899999988 5666
Q ss_pred ccch----hhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecC
Q 045968 152 RIPR----QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGS 212 (402)
Q Consensus 152 ~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 212 (402)
.-.. +++..-+.|++|++.++..... +-.| .......+..-+.|+.|++..+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i--g~~g------~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVL--GNQV------EMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCC--CHHH------HHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCc--CHHH------HHHHHHHHHhCCCcCeEeccCCC
Confidence 5322 2255666799999875422000 0000 11233456667778888876543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.99 E-value=8.8 Score=28.00 Aligned_cols=46 Identities=7% Similarity=0.042 Sum_probs=32.9
Q ss_pred CCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeee
Q 045968 125 GITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI 172 (402)
Q Consensus 125 ~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 172 (402)
+++.+... +..+.+|+.+.|.. .++.+...++.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 44455443 67788888888875 567777767888888888887654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.36 E-value=8.4 Score=28.11 Aligned_cols=44 Identities=14% Similarity=0.010 Sum_probs=20.9
Q ss_pred ccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecC
Q 045968 76 LEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISC 123 (402)
Q Consensus 76 l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~ 123 (402)
+..|...+|.+|.+|+.+.+..+ ++.+ ..+|..+. +|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~---v~~Ig~~aF~~C~-~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN---IGLLYDGMFSGCT-ALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT---SSCCCTTSSTTCT-TCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc---hheEcHHHHhccC-CccEEEEcC
Confidence 34444444555555555555443 3333 23444444 555555443
Done!