BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045972
         (299 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WFX|A Chain A, Crystal Structure Of Ape0204 From Aeropyrum Pernix
          Length = 186

 Score = 35.0 bits (79), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 97  LGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDN 156
           L + L  ILRH      + +  +G+ +V ++++   K         H V         D 
Sbjct: 5   LSKTLAGILRHHPGRYGVRLTREGWARVSEVVEGLRKAGWSWVEEWHIVG----VALHDP 60

Query: 157 KQRFSLLEENGELLIRANQGHTITT-VESESLLKPILSAEEVSVCVHGTYKRNLDSILES 215
           K R+ L   NGE  IRA  GH+I   VE        L  E   +  HGT +  L  I E 
Sbjct: 61  KGRYEL--RNGE--IRARYGHSIPVNVEP-------LPGEPPPILYHGTTEEALPLIXER 109

Query: 216 GLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNV 253
           G+ R +RL VH +  L    + +S  RR  N++  L V
Sbjct: 110 GIXRGRRLKVHLTSSLE---DAVSTGRRHGNLVAVLLV 144


>pdb|2IEL|A Chain A, Crystal Structure Of Tt0030 From Thermus Thermophilus
 pdb|2IEL|B Chain B, Crystal Structure Of Tt0030 From Thermus Thermophilus
          Length = 138

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 188 LKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSC---GLPT 233
           + P+L+ EE  +   G Y+  + S L  GL R  RL VH      GLP 
Sbjct: 82  ISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAERFGLPV 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,149,434
Number of Sequences: 62578
Number of extensions: 251283
Number of successful extensions: 537
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 7
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)