BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045975
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D30|A Chain A, Structure Of An Expansin Like Protein From Bacillus
Subtilis At 1.9a Resolution
pdb|4FER|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellohexaose
pdb|4FER|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellohexaose
pdb|4FFT|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Mixed-Linkage Glucan
pdb|4FFT|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Mixed-Linkage Glucan
pdb|4FG2|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellotetraose
pdb|4FG2|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellotetraose
pdb|4FG4|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Hemithiocellodextrin
pdb|4FG4|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Hemithiocellodextrin
Length = 208
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 37 QGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASVADTASGVINISYQ 82
+G ++V V DL P G RG +DLS AF + + G INI ++
Sbjct: 62 KGKTTVYV--TDLYPEG-ARGALDLSPNAFRKIGNMKDGKINIKWR 104
>pdb|2BH0|A Chain A, Crystal Structure Of A Semet Derivative Of Expa From
Bacillus Subtilis At 2.5 Angstrom
Length = 208
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 41 SVVVKIVDLCPAGSCRGTIDLSQEAFASVADTASGVINISYQ 82
V + DL P G RG +DLS AF + + G INI ++
Sbjct: 64 KTTVYVTDLYPEG-ARGALDLSPNAFRKIGNXKDGKINIKWR 104
>pdb|2D0O|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0O|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0P|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
pdb|2D0P|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
Length = 610
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 2 IAAASEAIWNGGGACGQYYQVTCVSGTNAG 31
+AA +EAI CG+ VT SGTN G
Sbjct: 277 VAAGAEAIMKAVDGCGRLDNVTGESGTNIG 306
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 39 SSSVVVKIVDLCPAGSCRGTIDLSQEAFASVADTASGVIN 78
SSS + + CPAG+ RG+I ++ AD S +N
Sbjct: 126 SSSKYLYVCQYCPAGNIRGSIATPYKSGPPCADCPSACVN 165
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 39 SSSVVVKIVDLCPAGSCRGTIDLSQEAFASVADTASGVIN 78
SSS + + CPAG+ RG+I ++ AD S +N
Sbjct: 127 SSSKYLYVCQYCPAGNIRGSIATPYKSGPPCADCPSACVN 166
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 1 MIAAASEAIWNGGGACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTID 60
M A + I+ G CG Y+V C C G + V V I D+ D
Sbjct: 55 MTACGNVPIFKDGKGCGSCYEVRCKEKPE------CSG-NPVTVYITDMNYEPIAPYHFD 107
Query: 61 LSQEAFASVA 70
LS +AF S+A
Sbjct: 108 LSGKAFGSLA 117
>pdb|1YSH|C Chain C, Localization And Dynamic Behavior Of Ribosomal Protein
L30e
Length = 104
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 1 MIAAASEAIWNG-----GGACGQYYQVTCVSGTNAG 31
M+A S ++G G ACG+YY+V C+S + G
Sbjct: 60 MLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPG 95
>pdb|3IZR|FF Chain f, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 112
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 1 MIAAASEAIWNG-----GGACGQYYQVTCVSGTNAG 31
M+A S ++G G ACG+YY+V C+S + G
Sbjct: 65 MLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPG 100
>pdb|1CC1|L Chain L, Crystal Structure Of A Reduced, Active Form Of The
Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
Length = 498
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 39 SSSVVVKIVDLCPAGSCRGTIDLSQEAFASVADTASGVI 77
SS +V +I +CP C ++ +AF V T +G I
Sbjct: 62 SSQIVQRICGVCPTAHCTASVMAQDDAFG-VKVTTNGRI 99
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 1 MIAAASEAIWNGGGACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTID 60
M + I+ G CG +++ C P C G VVV I D D
Sbjct: 55 MTGCGNTPIFKSGRGCGSCFEIKCTK------PEACSG-EPVVVHITDDNEEPIAPYHFD 107
Query: 61 LSQEAFASVA 70
LS AF ++A
Sbjct: 108 LSGHAFGAMA 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,402,928
Number of Sequences: 62578
Number of extensions: 79240
Number of successful extensions: 194
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 14
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)