Query 045975
Match_columns 82
No_of_seqs 116 out of 1030
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:29:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00837 DPBB_1 Rare lipopro 100.0 7.6E-29 1.6E-33 150.5 7.9 75 2-81 1-87 (87)
2 PLN03024 Putative EG45-like do 99.9 1.8E-27 3.9E-32 152.7 9.6 79 1-82 46-124 (125)
3 PF03330 DPBB_1: Rare lipoprot 99.9 2.2E-25 4.9E-30 131.9 7.3 76 2-81 1-78 (78)
4 PLN00193 expansin-A; Provision 99.9 2.2E-25 4.8E-30 157.0 8.2 79 1-82 64-154 (256)
5 PLN00050 expansin A; Provision 99.9 1E-24 2.3E-29 153.0 7.5 76 1-82 59-146 (247)
6 PLN03023 Expansin-like B1; Pro 99.9 2.7E-23 5.8E-28 145.9 7.4 72 1-82 59-137 (247)
7 PF00967 Barwin: Barwin family 99.2 2.5E-11 5.4E-16 76.8 3.6 54 14-82 58-115 (119)
8 COG4305 Endoglucanase C-termin 99.1 1.1E-10 2.5E-15 79.1 5.6 67 2-82 58-128 (232)
9 PF07249 Cerato-platanin: Cera 98.8 4.7E-08 1E-12 62.4 6.9 54 10-82 54-110 (119)
10 COG0797 RlpA Lipoproteins [Cel 98.6 2E-07 4.4E-12 65.2 7.2 55 15-81 118-172 (233)
11 TIGR00413 rlpA rare lipoprotei 98.5 8.1E-07 1.8E-11 61.4 7.7 55 15-81 34-88 (208)
12 PRK10672 rare lipoprotein A; P 98.2 1E-05 2.3E-10 59.8 7.8 55 15-81 114-168 (361)
13 PF02015 Glyco_hydro_45: Glyco 96.0 0.01 2.2E-07 41.1 3.8 43 14-65 82-124 (201)
14 PHA02945 interferon resistance 57.6 14 0.00031 22.4 2.7 23 38-63 59-81 (88)
15 COG5216 Uncharacterized conser 49.3 9.9 0.00021 21.7 1.0 29 13-57 24-52 (67)
16 PF04149 DUF397: Domain of unk 47.3 47 0.001 18.1 5.1 37 15-69 13-50 (56)
17 TIGR02645 ARCH_P_rylase putati 40.2 1.6E+02 0.0034 23.3 6.6 52 13-79 26-78 (493)
18 PF03152 UFD1: Ubiquitin fusio 37.1 1.3E+02 0.0028 20.3 5.6 49 19-81 48-96 (176)
19 PF14369 zf-RING_3: zinc-finge 37.0 37 0.00081 16.8 1.9 9 49-59 23-31 (35)
20 PRK11657 dsbG disulfide isomer 31.2 82 0.0018 22.0 3.6 17 38-56 116-133 (251)
21 PF13719 zinc_ribbon_5: zinc-r 29.7 51 0.0011 16.3 1.8 16 49-66 4-19 (37)
22 COG1093 SUI2 Translation initi 28.3 67 0.0014 23.3 2.7 24 38-64 60-83 (269)
23 PTZ00257 Glycoprotein GP63 (le 27.6 74 0.0016 25.8 3.1 13 14-26 504-516 (622)
24 TIGR03170 flgA_cterm flagella 27.1 1.3E+02 0.0029 18.2 3.7 24 15-49 94-117 (122)
25 PRK08061 rpsN 30S ribosomal pr 26.8 41 0.00088 19.0 1.2 37 43-81 17-61 (61)
26 PF11023 DUF2614: Protein of u 25.5 32 0.00069 21.9 0.6 40 12-63 60-99 (114)
27 PRK12618 flgA flagellar basal 24.0 1.5E+02 0.0032 19.1 3.6 24 15-49 110-133 (141)
28 PRK08881 rpsN 30S ribosomal pr 21.0 34 0.00073 21.0 0.1 44 38-81 52-101 (101)
29 PRK02935 hypothetical protein; 21.0 61 0.0013 20.4 1.2 33 18-62 67-99 (110)
30 KOG1779 40s ribosomal protein 20.5 1E+02 0.0023 18.4 2.1 11 15-25 36-46 (84)
No 1
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.96 E-value=7.6e-29 Score=150.52 Aligned_cols=75 Identities=37% Similarity=0.802 Sum_probs=67.5
Q ss_pred EeeeChhhhCCCCcCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCC---------CC---CCeeEcCHHHHHhh
Q 045975 2 IAAASEAIWNGGGACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAG---------SC---RGTIDLSQEAFASV 69 (82)
Q Consensus 2 ~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~---------~C---~~~lDLs~~aF~~l 69 (82)
+||+|+.||++|+.||+||||+|.+ .+..|.++++|+|+|+|+||.. || +.|||||+.||.+|
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~-----~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~i 75 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVD-----SPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKI 75 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCC-----CCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHH
Confidence 5899999999999999999999964 3567877789999999999973 67 47999999999999
Q ss_pred ccCCCcEEEEEE
Q 045975 70 ADTASGVINISY 81 (82)
Q Consensus 70 a~~~~G~i~v~w 81 (82)
|..+.|+|+|+|
T Consensus 76 A~~~~Gvi~v~y 87 (87)
T smart00837 76 AQYKAGIVPVKY 87 (87)
T ss_pred hhhcCCEEeeEC
Confidence 999999999997
No 2
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=1.8e-27 Score=152.72 Aligned_cols=79 Identities=52% Similarity=1.001 Sum_probs=68.9
Q ss_pred CEeeeChhhhCCCCcCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCeeEcCHHHHHhhccCCCcEEEEE
Q 045975 1 MIAAASEAIWNGGGACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASVADTASGVINIS 80 (82)
Q Consensus 1 ~~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~~lDLs~~aF~~la~~~~G~i~v~ 80 (82)
|+||+|+.+|++|+.||+||||+|.+... ..+..| ++++|+|+|+|+||. .|..|||||++||++||+.++|+|+|+
T Consensus 46 ~iaAls~~lf~~G~~CG~c~~V~C~~~~~-~~~~~c-~gksV~V~VtD~CP~-~C~~~~DLS~~AF~~iA~~~aG~v~V~ 122 (125)
T PLN03024 46 MIAAASDSLWNNGRVCGKMFTVKCKGPRN-AVPHPC-TGKSVTVKIVDHCPS-GCASTLDLSREAFAQIANPVAGIINID 122 (125)
T ss_pred EeEEeCHHHcCCCcccCceEEEEECCCCc-cccccc-cCCeEEEEEEcCCCC-CCCCceEcCHHHHHHhcCccCCEEEEE
Confidence 68999999999999999999999964311 124577 789999999999994 288899999999999999999999999
Q ss_pred EC
Q 045975 81 YQ 82 (82)
Q Consensus 81 w~ 82 (82)
|.
T Consensus 123 y~ 124 (125)
T PLN03024 123 YI 124 (125)
T ss_pred Ee
Confidence 94
No 3
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.92 E-value=2.2e-25 Score=131.88 Aligned_cols=76 Identities=43% Similarity=0.807 Sum_probs=60.4
Q ss_pred EeeeChhhhCCCCcCCceEEEEecCCCCCCCCCCCCCC-CeEEEEEeecCCCCCC-CCeeEcCHHHHHhhccCCCcEEEE
Q 045975 2 IAAASEAIWNGGGACGQYYQVTCVSGTNAGTPYPCQGS-SSVVVKIVDLCPAGSC-RGTIDLSQEAFASVADTASGVINI 79 (82)
Q Consensus 2 ~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~~c~~g-~~v~v~V~D~Cp~~~C-~~~lDLs~~aF~~la~~~~G~i~v 79 (82)
+||++..+|++|..||+||++++...-... +. |..+ ++|+|+|+|+||+ | .+|||||+.||++|+.++.|+++|
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~-~~-~~~~~ksV~v~V~D~Cp~--~~~~~lDLS~~aF~~la~~~~G~i~V 76 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASAT-GT-CKVGNKSVTVTVVDRCPG--CPPNHLDLSPAAFKALADPDAGVIPV 76 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT----BESEECEEEEEEEEE-TT--SSSSEEEEEHHHHHHTBSTTCSSEEE
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCcc-ce-EEecCCeEEEEEEccCCC--CcCCEEEeCHHHHHHhCCCCceEEEE
Confidence 689999999999999999999995432111 11 5322 9999999999999 8 689999999999999999999999
Q ss_pred EE
Q 045975 80 SY 81 (82)
Q Consensus 80 ~w 81 (82)
+|
T Consensus 77 ~w 78 (78)
T PF03330_consen 77 EW 78 (78)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 4
>PLN00193 expansin-A; Provisional
Probab=99.92 E-value=2.2e-25 Score=157.03 Aligned_cols=79 Identities=29% Similarity=0.614 Sum_probs=70.0
Q ss_pred CEeeeChhhhCCCCcCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCC---------CCC---CCeeEcCHHHHHh
Q 045975 1 MIAAASEAIWNGGGACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPA---------GSC---RGTIDLSQEAFAS 68 (82)
Q Consensus 1 ~~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~---------~~C---~~~lDLs~~aF~~ 68 (82)
|+||+|+.||++|..||+||||+|... ..+.+|.+|++|+|+|||+||. +|| +.|||||+.||.+
T Consensus 64 ~~AAls~~lf~~G~~CGaCyev~C~~~---~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~ 140 (256)
T PLN00193 64 RTAALSTALFNDGASCGQCYRIMCDYQ---ADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEK 140 (256)
T ss_pred eeeecCHhHccCCccccCeEEEECCCC---CCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHH
Confidence 689999999999999999999999532 1466897778999999999996 368 3699999999999
Q ss_pred hccCCCcEEEEEEC
Q 045975 69 VADTASGVINISYQ 82 (82)
Q Consensus 69 la~~~~G~i~v~w~ 82 (82)
||....|+|+|+||
T Consensus 141 iA~~~~Giv~V~yr 154 (256)
T PLN00193 141 IGIYRGGIVPVLFQ 154 (256)
T ss_pred HhhhcCCeEeEEEE
Confidence 99999999999997
No 5
>PLN00050 expansin A; Provisional
Probab=99.91 E-value=1e-24 Score=153.01 Aligned_cols=76 Identities=32% Similarity=0.731 Sum_probs=67.6
Q ss_pred CEeeeChhhhCCCCcCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCC---------CCC---CCeeEcCHHHHHh
Q 045975 1 MIAAASEAIWNGGGACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPA---------GSC---RGTIDLSQEAFAS 68 (82)
Q Consensus 1 ~~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~---------~~C---~~~lDLs~~aF~~ 68 (82)
|+||+|+.||++|..||+||||+|.+ .+.+|. +++|+|+|||+||. +|| +.|||||+.||.+
T Consensus 59 ~~AAls~~lf~~G~~CGaCyeV~C~~-----~~~~C~-~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~ 132 (247)
T PLN00050 59 NTAALSTALFNNGLSCGACFEIKCVN-----DNIWCL-PGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQK 132 (247)
T ss_pred eeeeccHhHccCCccccceEEEEcCC-----CCcccC-CCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHH
Confidence 68999999999999999999999975 244784 45899999999996 368 3799999999999
Q ss_pred hccCCCcEEEEEEC
Q 045975 69 VADTASGVINISYQ 82 (82)
Q Consensus 69 la~~~~G~i~v~w~ 82 (82)
||...+|+|+|+||
T Consensus 133 iA~~~aGii~V~yR 146 (247)
T PLN00050 133 IAQYKAGIVPVQYR 146 (247)
T ss_pred HhhhcCCeeeeEEE
Confidence 99999999999997
No 6
>PLN03023 Expansin-like B1; Provisional
Probab=99.89 E-value=2.7e-23 Score=145.88 Aligned_cols=72 Identities=32% Similarity=0.594 Sum_probs=64.7
Q ss_pred CEeeeChhhhCCCCcCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCeeEcCHHHHHhhcc-------CC
Q 045975 1 MIAAASEAIWNGGGACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASVAD-------TA 73 (82)
Q Consensus 1 ~~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~~lDLs~~aF~~la~-------~~ 73 (82)
++||+| .||++|.+||+||||+|. .+.+| .+++|+|+|||+||. ++.|||||.+||.+||. ..
T Consensus 59 ~~aa~s-~Lf~~G~~CGaCy~irC~------~~~~C-~~~~v~V~iTd~~~~--~~~hFdLS~~AF~~iA~pg~~~~l~~ 128 (247)
T PLN03023 59 NVAGVS-RLYRNGTGCGACYQVRCK------APNLC-SDDGVNVVVTDYGEG--DKTDFILSPRAYARLARPNMAAELFA 128 (247)
T ss_pred eeeeeh-hhhcCCchhcccEEeecC------CCCcc-CCCCeEEEEEeCCCC--CCCccccCHHHHHHHhCccccchhcc
Confidence 478998 999999999999999996 36689 556899999999997 78999999999999997 46
Q ss_pred CcEEEEEEC
Q 045975 74 SGVINISYQ 82 (82)
Q Consensus 74 ~G~i~v~w~ 82 (82)
+|+|+|+||
T Consensus 129 aGiv~v~Yr 137 (247)
T PLN03023 129 YGVVDVEYR 137 (247)
T ss_pred CcEEEeEEE
Confidence 799999996
No 7
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.17 E-value=2.5e-11 Score=76.78 Aligned_cols=54 Identities=31% Similarity=0.646 Sum_probs=39.9
Q ss_pred CcCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCeeEcCHHHHHhhcc----CCCcEEEEEEC
Q 045975 14 GACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASVAD----TASGVINISYQ 82 (82)
Q Consensus 14 ~~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~~lDLs~~aF~~la~----~~~G~i~v~w~ 82 (82)
..||+|++||+.. +|.+++|+|||+|+. ++|||.+.+|++|-. ...|.+.|.|+
T Consensus 58 ~~CGkClrVTNt~-----------tga~~~~RIVDqCsn----GGLDld~~vF~~iDtdG~G~~~Ghl~V~y~ 115 (119)
T PF00967_consen 58 DSCGKCLRVTNTA-----------TGAQVTVRIVDQCSN----GGLDLDPTVFNQIDTDGQGYAQGHLIVDYE 115 (119)
T ss_dssp GGTT-EEEEE-TT-----------T--EEEEEEEEE-SS----SSEES-SSSHHHH-SSSHHHHHTEEEEEEE
T ss_pred ccccceEEEEecC-----------CCcEEEEEEEEcCCC----CCcccChhHHhhhccCCcccccceEEEEEE
Confidence 5899999999863 799999999999985 589999999999953 35788888874
No 8
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.13 E-value=1.1e-10 Score=79.09 Aligned_cols=67 Identities=33% Similarity=0.551 Sum_probs=57.6
Q ss_pred EeeeChhhhCCC----CcCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCeeEcCHHHHHhhccCCCcEE
Q 045975 2 IAAASEAIWNGG----GACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASVADTASGVI 77 (82)
Q Consensus 2 ~aA~s~~~~~~g----~~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~~lDLs~~aF~~la~~~~G~i 77 (82)
+.||+..+.+-| +.-|+..||.. +....+|.|+|+-|++ -.+.||||+.||.+|++..+|+|
T Consensus 58 ITAlNPaqlNlGGipAAmAGaYLrVqG-------------PKG~TTVYVTDlYPeg-asGaLDLSpNAFakIGnm~qGrI 123 (232)
T COG4305 58 ITALNPAQLNLGGIPAAMAGAYLRVQG-------------PKGKTTVYVTDLYPEG-ASGALDLSPNAFAKIGNMKQGRI 123 (232)
T ss_pred eeecCHHHcccCCchhhhccceEEEEC-------------CCCceEEEEecccccc-cccccccChHHHhhhcchhcCcc
Confidence 568888888765 57899999985 4567899999999982 26899999999999999999999
Q ss_pred EEEEC
Q 045975 78 NISYQ 82 (82)
Q Consensus 78 ~v~w~ 82 (82)
||+||
T Consensus 124 pvqWr 128 (232)
T COG4305 124 PVQWR 128 (232)
T ss_pred ceeEE
Confidence 99997
No 9
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.75 E-value=4.7e-08 Score=62.40 Aligned_cols=54 Identities=20% Similarity=0.519 Sum_probs=41.3
Q ss_pred hCCCCcCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCeeEcCHHHHHhhcc---CCCcEEEEEEC
Q 045975 10 WNGGGACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASVAD---TASGVINISYQ 82 (82)
Q Consensus 10 ~~~g~~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~~lDLs~~aF~~la~---~~~G~i~v~w~ 82 (82)
| |.+.||.|+||+- +|++|.+..+|.-.+ .|+|+.+||+.|.+ ...|+|+++|+
T Consensus 54 W-nS~~CGtC~~lty-------------~g~si~vlaID~a~~-----gfnis~~A~n~LT~g~a~~lG~V~a~~~ 110 (119)
T PF07249_consen 54 W-NSPNCGTCWKLTY-------------NGRSIYVLAIDHAGG-----GFNISLDAMNDLTNGQAVELGRVDATYT 110 (119)
T ss_dssp T-T-TTTT-EEEEEE-------------TTEEEEEEEEEE-SS-----SEEE-HHHHHHHHTS-CCCC-EEE-EEE
T ss_pred C-CCCCCCCeEEEEE-------------CCeEEEEEEEecCCC-----cccchHHHHHHhcCCcccceeEEEEEEE
Confidence 5 4579999999994 789999999999543 59999999999985 57899999874
No 10
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=2e-07 Score=65.23 Aligned_cols=55 Identities=33% Similarity=0.353 Sum_probs=47.1
Q ss_pred cCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCeeEcCHHHHHhhccCCCcEEEEEE
Q 045975 15 ACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASVADTASGVINISY 81 (82)
Q Consensus 15 ~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~~lDLs~~aF~~la~~~~G~i~v~w 81 (82)
.=|..++||++. ||++|+|+|.|++|.. -...||||..|+++|+..+.|+.+|+.
T Consensus 118 P~~t~v~VtNl~-----------NgrsvvVRINDRGPf~-~gRiIDlS~aAA~~l~~~~~G~a~V~i 172 (233)
T COG0797 118 PLPTYVRVTNLD-----------NGRSVVVRINDRGPFV-SGRIIDLSKAAADKLGMIRSGVAKVRI 172 (233)
T ss_pred CCCCEEEEEEcc-----------CCcEEEEEEeCCCCCC-CCcEeEcCHHHHHHhCCccCceEEEEE
Confidence 467889999874 8999999999999961 157999999999999999999887664
No 11
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.50 E-value=8.1e-07 Score=61.36 Aligned_cols=55 Identities=29% Similarity=0.345 Sum_probs=48.4
Q ss_pred cCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCeeEcCHHHHHhhccCCCcEEEEEE
Q 045975 15 ACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASVADTASGVINISY 81 (82)
Q Consensus 15 ~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~~lDLs~~aF~~la~~~~G~i~v~w 81 (82)
..|..++||+.. +|++|+|+|+|++|.. -...||||..|+.+|+-.+.|+.+|+.
T Consensus 34 PlgT~V~VtNl~-----------ngrsviVrVnDRGPf~-~gRiIDLS~aAA~~Lg~~~~G~a~V~v 88 (208)
T TIGR00413 34 PFNTYVKVTNLH-----------NNRSVIVRINDRGPFS-DDRIIDLSHAAAREIGLISRGVGQVRI 88 (208)
T ss_pred CCCCEEEEEECC-----------CCCEEEEEEeCCCCCC-CCCEEECCHHHHHHcCCCcCceEEEEE
Confidence 689999999873 8999999999999971 157999999999999999999988764
No 12
>PRK10672 rare lipoprotein A; Provisional
Probab=98.18 E-value=1e-05 Score=59.83 Aligned_cols=55 Identities=27% Similarity=0.338 Sum_probs=46.8
Q ss_pred cCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCeeEcCHHHHHhhccCCCcEEEEEE
Q 045975 15 ACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASVADTASGVINISY 81 (82)
Q Consensus 15 ~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~~lDLs~~aF~~la~~~~G~i~v~w 81 (82)
.-|..++||++. +|++|+|+|+|++|.. =...||||..|+++|+-...+.|.|+.
T Consensus 114 Plps~vrVtNl~-----------ngrsvvVrVnDRGP~~-~gRiiDLS~aAA~~Lg~~~~~~V~ve~ 168 (361)
T PRK10672 114 PIPSYVRVTNLA-----------NGRMIVVRINDRGPYG-PGRVIDLSRAAADRLNTSNNTKVRIDP 168 (361)
T ss_pred CCCCEEEEEECC-----------CCcEEEEEEeCCCCCC-CCCeeEcCHHHHHHhCCCCCceEEEEE
Confidence 578999999874 8999999999999972 157999999999999987777777763
No 13
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=96.03 E-value=0.01 Score=41.05 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=29.3
Q ss_pred CcCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCeeEcCHHH
Q 045975 14 GACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEA 65 (82)
Q Consensus 14 ~~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~~lDLs~~a 65 (82)
..|++||+++=++.. ..||+.+|+|++.-.. .-.+||||....
T Consensus 82 ~~Cc~Cy~LtFt~g~--------l~GKkmiVQ~tNtG~d-lg~n~FDl~iPG 124 (201)
T PF02015_consen 82 SWCCACYELTFTSGP--------LKGKKMIVQVTNTGGD-LGSNQFDLAIPG 124 (201)
T ss_dssp HHTT-EEEEEE-SST--------TTT-EEEEEEEEE-TT-TTTTEEEEE-TT
T ss_pred CcccceEEEEEcCCC--------cCCCEeEEEecccCCC-CCCCeEEEEeCC
Confidence 579999999987532 2799999999998654 126899997654
No 14
>PHA02945 interferon resistance protein; Provisional
Probab=57.57 E-value=14 Score=22.42 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=19.7
Q ss_pred CCCeEEEEEeecCCCCCCCCeeEcCH
Q 045975 38 GSSSVVVKIVDLCPAGSCRGTIDLSQ 63 (82)
Q Consensus 38 ~g~~v~v~V~D~Cp~~~C~~~lDLs~ 63 (82)
.|+.++++|...=+. ++++|||-
T Consensus 59 ~GqkvV~KVirVd~~---kg~IDlSl 81 (88)
T PHA02945 59 VGKTVKVKVIRVDYT---KGYIDVNY 81 (88)
T ss_pred cCCEEEEEEEEECCC---CCEEEeEe
Confidence 589999999998776 89999974
No 15
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=49.29 E-value=9.9 Score=21.66 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=18.6
Q ss_pred CCcCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCC
Q 045975 13 GGACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRG 57 (82)
Q Consensus 13 g~~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~ 57 (82)
--.||-.|+|.-.+ -....++-+||+ |.-
T Consensus 24 PCPCGDRFeIsLeD--------------l~~GE~VArCPS--CSL 52 (67)
T COG5216 24 PCPCGDRFEISLED--------------LRNGEVVARCPS--CSL 52 (67)
T ss_pred cCCCCCEeEEEHHH--------------hhCCceEEEcCC--ceE
Confidence 34799999997432 122345667998 853
No 16
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=47.33 E-value=47 Score=18.09 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=26.5
Q ss_pred cCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeec-CCCCCCCCeeEcCHHHHHhh
Q 045975 15 ACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDL-CPAGSCRGTIDLSQEAFASV 69 (82)
Q Consensus 15 ~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~-Cp~~~C~~~lDLs~~aF~~l 69 (82)
.=|.|+||.-. ++ . |-|-|. -|. ...|-+++.+|..+
T Consensus 13 ~~~~CVEva~~------------~~--~-v~vRDSk~p~---~~~L~~t~~eW~aF 50 (56)
T PF04149_consen 13 GGGNCVEVARL------------PG--G-VAVRDSKDPD---GPVLTFTPAEWAAF 50 (56)
T ss_pred CCCCcEEEEee------------cc--e-EEEecCCCCC---CCEEEeCHHHHHHH
Confidence 34899999743 33 2 666663 443 67999999999986
No 17
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=40.24 E-value=1.6e+02 Score=23.27 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=35.5
Q ss_pred CCcCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeec-CCCCCCCCeeEcCHHHHHhhccCCCcEEEE
Q 045975 13 GGACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDL-CPAGSCRGTIDLSQEAFASVADTASGVINI 79 (82)
Q Consensus 13 g~~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~-Cp~~~C~~~lDLs~~aF~~la~~~~G~i~v 79 (82)
|-.=+..++|+. +++++++.|++. .-- =++.+-||..+|++|.-...-.|.|
T Consensus 26 g~~~~~rv~v~~-------------~~~~~~a~~~~~~~~~--~~~~~gl~~~~~~~l~~~~g~~v~v 78 (493)
T TIGR02645 26 GFTPQDRVEVRI-------------GGKSLIAILVGSDTLV--EMGEIGLSVSAVETFMAREGDIVTV 78 (493)
T ss_pred CCCcCCeEEEEe-------------CCEEEEEEEecccccc--cCCeeeccHHHHHHcCCCCCCEEEE
Confidence 445567788874 578899888863 211 1688999999999996443334554
No 18
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=37.08 E-value=1.3e+02 Score=20.28 Aligned_cols=49 Identities=10% Similarity=0.304 Sum_probs=34.7
Q ss_pred eEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCeeEcCHHHHHhhccCCCcEEEEEE
Q 045975 19 YYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASVADTASGVINISY 81 (82)
Q Consensus 19 c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~~lDLs~~aF~~la~~~~G~i~v~w 81 (82)
-|+|+... +++.+.+=|-+.=.. .+.+-|+...|+.|.-.....|.|++
T Consensus 48 ~F~i~n~~-----------~~~~th~GVlEFsA~---eG~i~lP~wmm~~L~l~~g~~V~v~~ 96 (176)
T PF03152_consen 48 LFEISNPD-----------NGKRTHCGVLEFSAE---EGTIYLPPWMMQNLGLQEGDIVRVEY 96 (176)
T ss_dssp EEEEEETT-----------TTEEEEEEEEEE--C---TTEEEE-CHHHHHHT--TTEEEEEEE
T ss_pred EEEEecCC-----------CCcEEEEEEEEeEcC---CCeEEeCccHHhhcCCCCCCEEEEEE
Confidence 57777542 577888888888665 68999999999999866666788776
No 19
>PF14369 zf-RING_3: zinc-finger
Probab=37.02 E-value=37 Score=16.80 Aligned_cols=9 Identities=44% Similarity=1.328 Sum_probs=6.4
Q ss_pred cCCCCCCCCee
Q 045975 49 LCPAGSCRGTI 59 (82)
Q Consensus 49 ~Cp~~~C~~~l 59 (82)
.||. |.+.|
T Consensus 23 ~CP~--C~~gF 31 (35)
T PF14369_consen 23 ACPR--CHGGF 31 (35)
T ss_pred CCcC--CCCcE
Confidence 4888 86655
No 20
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=31.25 E-value=82 Score=22.02 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=12.1
Q ss_pred CCCeEEEEEee-cCCCCCCC
Q 045975 38 GSSSVVVKIVD-LCPAGSCR 56 (82)
Q Consensus 38 ~g~~v~v~V~D-~Cp~~~C~ 56 (82)
+++.+.+..+| .||. |+
T Consensus 116 ~ak~~I~vFtDp~Cpy--C~ 133 (251)
T PRK11657 116 DAPRIVYVFADPNCPY--CK 133 (251)
T ss_pred CCCeEEEEEECCCChh--HH
Confidence 45566667777 8998 93
No 21
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=29.74 E-value=51 Score=16.29 Aligned_cols=16 Identities=19% Similarity=0.777 Sum_probs=13.1
Q ss_pred cCCCCCCCCeeEcCHHHH
Q 045975 49 LCPAGSCRGTIDLSQEAF 66 (82)
Q Consensus 49 ~Cp~~~C~~~lDLs~~aF 66 (82)
.||. |...|.|+++..
T Consensus 4 ~CP~--C~~~f~v~~~~l 19 (37)
T PF13719_consen 4 TCPN--CQTRFRVPDDKL 19 (37)
T ss_pred ECCC--CCceEEcCHHHc
Confidence 5888 999999988863
No 22
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=28.34 E-value=67 Score=23.35 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=20.9
Q ss_pred CCCeEEEEEeecCCCCCCCCeeEcCHH
Q 045975 38 GSSSVVVKIVDLCPAGSCRGTIDLSQE 64 (82)
Q Consensus 38 ~g~~v~v~V~D~Cp~~~C~~~lDLs~~ 64 (82)
.|+.++++|-..=|. ++|+|||-.
T Consensus 60 egqkvV~kVlrVd~~---rg~IDLSlk 83 (269)
T COG1093 60 EGQKVVAKVLRVDPK---RGHIDLSLK 83 (269)
T ss_pred cCCeEEEEEEEEcCC---CCeEeeehh
Confidence 588999999999887 899999964
No 23
>PTZ00257 Glycoprotein GP63 (leishmanolysin); Provisional
Probab=27.59 E-value=74 Score=25.77 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=9.5
Q ss_pred CcCCceEEEEecC
Q 045975 14 GACGQYYQVTCVS 26 (82)
Q Consensus 14 ~~CG~c~~v~~~~ 26 (82)
..=+.|++|+|..
T Consensus 504 ~~~~~C~~v~C~~ 516 (622)
T PTZ00257 504 PNNALCANVMCDT 516 (622)
T ss_pred ccCCEEEEEECCC
Confidence 3447899999864
No 24
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=27.09 E-value=1.3e+02 Score=18.15 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=19.4
Q ss_pred cCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeec
Q 045975 15 ACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDL 49 (82)
Q Consensus 15 ~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~ 49 (82)
.=|.-++|++.+ +++.+.++|++.
T Consensus 94 ~~G~~I~V~N~~-----------s~k~i~~~V~~~ 117 (122)
T TIGR03170 94 AVGDQIRVRNLS-----------SGKIISGIVTGP 117 (122)
T ss_pred CCCCEEEEEECC-----------CCCEEEEEEeCC
Confidence 558889999864 689999999874
No 25
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=26.80 E-value=41 Score=19.00 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=28.4
Q ss_pred EEEEeecCCCCCCC------CeeEcCHHHHHhhcc--CCCcEEEEEE
Q 045975 43 VVKIVDLCPAGSCR------GTIDLSQEAFASVAD--TASGVINISY 81 (82)
Q Consensus 43 ~v~V~D~Cp~~~C~------~~lDLs~~aF~~la~--~~~G~i~v~w 81 (82)
.+.+.+.|.- |. ..|.||+-.|..+|. .=.|+..-+|
T Consensus 17 ~~r~~nRC~~--tGR~rgvir~fgl~R~~FRe~A~~G~ipGv~KasW 61 (61)
T PRK08061 17 KVRAYTRCER--CGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61 (61)
T ss_pred Ccccceeeec--CCCCcceeccCCccHHHHHHHHHcCcCCCeeeccC
Confidence 3678889987 61 478899999999985 4477777666
No 26
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=25.50 E-value=32 Score=21.87 Aligned_cols=40 Identities=28% Similarity=0.543 Sum_probs=25.2
Q ss_pred CCCcCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCeeEcCH
Q 045975 12 GGGACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTIDLSQ 63 (82)
Q Consensus 12 ~g~~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~~lDLs~ 63 (82)
-|-.+.+=++|+|++ | ...+...-=+|.|+. |+..+-|.+
T Consensus 60 IGmlStkav~V~CP~---------C-~K~TKmLGr~D~CM~--C~~pLTLd~ 99 (114)
T PF11023_consen 60 IGMLSTKAVQVECPN---------C-GKQTKMLGRVDACMH--CKEPLTLDP 99 (114)
T ss_pred hhhhcccceeeECCC---------C-CChHhhhchhhccCc--CCCcCccCc
Confidence 455677778999863 4 333444444599999 965554444
No 27
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=23.99 E-value=1.5e+02 Score=19.09 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=19.5
Q ss_pred cCCceEEEEecCCCCCCCCCCCCCCCeEEEEEeec
Q 045975 15 ACGQYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDL 49 (82)
Q Consensus 15 ~CG~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~ 49 (82)
.=|.-++|++.+ +++.|.++|++.
T Consensus 110 ~~Gd~IrV~N~~-----------S~riV~g~V~~~ 133 (141)
T PRK12618 110 GVGDEIRVMNLS-----------SRTTVSGRIAAD 133 (141)
T ss_pred CCCCEEEEEECC-----------CCCEEEEEEecC
Confidence 458889998864 689999999875
No 28
>PRK08881 rpsN 30S ribosomal protein S14; Reviewed
Probab=20.95 E-value=34 Score=21.04 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=32.8
Q ss_pred CCCeEEEEEeecCCCCCC----CCeeEcCHHHHHhhcc--CCCcEEEEEE
Q 045975 38 GSSSVVVKIVDLCPAGSC----RGTIDLSQEAFASVAD--TASGVINISY 81 (82)
Q Consensus 38 ~g~~v~v~V~D~Cp~~~C----~~~lDLs~~aF~~la~--~~~G~i~v~w 81 (82)
|.++--+.|.+.|.-++= -..|-||.-.|..+|. .=+|+..-+|
T Consensus 52 Pr~ss~tRi~NRC~~TGR~Rgv~r~F~LsRi~fRela~~G~lpGv~KsSW 101 (101)
T PRK08881 52 PRNSSPTRLRNRCELTGRPRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101 (101)
T ss_pred CcccchHHHhccccCCCCCCccccCcCchHHHHHHHHHcCCCCCeecccC
Confidence 455667788899987211 2689999999999985 3478877766
No 29
>PRK02935 hypothetical protein; Provisional
Probab=20.95 E-value=61 Score=20.44 Aligned_cols=33 Identities=30% Similarity=0.605 Sum_probs=20.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCeEEEEEeecCCCCCCCCeeEcC
Q 045975 18 QYYQVTCVSGTNAGTPYPCQGSSSVVVKIVDLCPAGSCRGTIDLS 62 (82)
Q Consensus 18 ~c~~v~~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~~C~~~lDLs 62 (82)
+=.+|.|++ | ...+...-=+|.|+. |+.-|-|.
T Consensus 67 kavqV~CP~---------C-~K~TKmLGrvD~CM~--C~~PLTLd 99 (110)
T PRK02935 67 KAVQVICPS---------C-EKPTKMLGRVDACMH--CNQPLTLD 99 (110)
T ss_pred cceeeECCC---------C-CchhhhccceeecCc--CCCcCCcC
Confidence 446777753 4 344555666899998 96544443
No 30
>KOG1779 consensus 40s ribosomal protein S27 [Translation, ribosomal structure and biogenesis]
Probab=20.53 E-value=1e+02 Score=18.42 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=9.6
Q ss_pred cCCceEEEEec
Q 045975 15 ACGQYYQVTCV 25 (82)
Q Consensus 15 ~CG~c~~v~~~ 25 (82)
.|+.|++||+.
T Consensus 36 kC~gc~~iT~v 46 (84)
T KOG1779|consen 36 KCPGCFKITTV 46 (84)
T ss_pred EcCCceEEEEE
Confidence 59999999975
Done!