BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045980
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HC5|A Chain A, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|B Chain B, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|C Chain C, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|D Chain D, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
Length = 133
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 21/120 (17%)
Query: 1 IYVTDVAKSVAFYA------KAFDYTVRTLDHSHRWGEL--ESGQTTIAFTRLHQHETDE 52
I V+D K++ FY K FD LD + R+ + QT +A +E
Sbjct: 19 IIVSDQEKALDFYVNTLGFEKVFD---NQLDPNXRFVTVVPPGAQTQVALGLPSWYEDGR 75
Query: 53 LTGSVQTPSSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDING 112
G + D+D AYK E G PE WGQ+ + D +G
Sbjct: 76 KPGGYTG----------ISLITRDIDEAYKTLTERGVTFTKPPEXXPWGQRATWFSDPDG 125
>pdb|3ITW|A Chain A, Crystal Structure Of Tiox From Micromonospora Sp. Ml1
pdb|3ITW|B Chain B, Crystal Structure Of Tiox From Micromonospora Sp. Ml1
Length = 137
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 69 EVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDING 112
+V +DVD + R+ GA V +DK WG + VRD+ G
Sbjct: 71 QVIVWVSDVDEHFMRSTAAGADIVQPLQDKPWGLRQYLVRDLEG 114
>pdb|3GHJ|A Chain A, Crystal Structure From The Mobile Metagenome Of Halifax
Harbour Sewage Outfall: Integron Cassette Protein
Hfx_cass4
Length = 141
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELE-SGQTTIAFTRLHQHETDELTGSVQT 59
+ V ++ KS FY + + LD + RW L SG+ + + + S +
Sbjct: 34 VKVKNLEKSSQFYTEILGFEAGLLDSARRWNFLWVSGRAGXVVLQEEKENWQQQHFSFRV 93
Query: 60 PSSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG-YVRDING 112
S + +P+ K+A+E+ V V P ++EW Q V Y D NG
Sbjct: 94 EKS-EIEPL-------------KKALESKGVSVHGPVNQEWXQAVSLYFADPNG 133
>pdb|2QNT|A Chain A, Crystal Structure Of Protein Of Unknown Function From
Agrobacterium Tumefaciens Str. C58
Length = 141
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 2 YVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAF-TRLHQHETDELTGSV-QT 59
+V D+ +S +FY + LE + + F T HE L ++ +T
Sbjct: 15 FVRDINRSKSFYRDRLGLKI-----------LEDFGSFVLFETGFAIHEGRSLEETIWRT 63
Query: 60 PSSPQ----RQPIEVCFAYADVDAAYKRAVENGAVPVSEP-EDKEWGQKVGYVRDINGIV 114
S Q R+ + F +ADVDAA++ + V + P E + WGQ+V D +G
Sbjct: 64 SSDAQEAYGRRNXLLYFEHADVDAAFQDIAPH--VELIHPLERQAWGQRVFRFYDPDGHA 121
Query: 115 VRMGSYVQAS 124
+ +G + S
Sbjct: 122 IEVGESLSQS 131
>pdb|3VCX|A Chain A, Crystal Structure Of A Putative GlyoxalaseBLEOMYCIN
RESISTANCE Protein From Rhodopseudomonas Palustris
Cga009
pdb|3VCX|B Chain B, Crystal Structure Of A Putative GlyoxalaseBLEOMYCIN
RESISTANCE Protein From Rhodopseudomonas Palustris
Cga009
Length = 164
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 10/119 (8%)
Query: 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRL--HQHETDELTGSVQ 58
I +DVA + AFY + F + R L + + L+S + + QH T G Q
Sbjct: 31 IXTSDVAATAAFYCQHFGF--RPLFEADWYVHLQSAEDPAVNLAILDGQHSTIPAAGRGQ 88
Query: 59 TPSSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRM 117
+ + F D D Y R + G + D+++GQ+ D NG+++ +
Sbjct: 89 VSG------LILNFEVDDPDREYARLQQAGLPILLTLRDEDFGQRHFITADPNGVLIDI 141
>pdb|2A4W|A Chain A, Crystal Structure Of Mitomycin C-Binding Protein Complexed
With Copper(Ii)-Bleomycin A2
pdb|2A4W|B Chain B, Crystal Structure Of Mitomycin C-Binding Protein Complexed
With Copper(Ii)-Bleomycin A2
pdb|2A4X|A Chain A, Crystal Structure Of Mitomycin C-Binding Protein Complexed
With Metal-Free Bleomycin A2
pdb|2A4X|B Chain B, Crystal Structure Of Mitomycin C-Binding Protein Complexed
With Metal-Free Bleomycin A2
Length = 138
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 1 IYVTDVAKSVAFY----------AKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHET 50
+ V D+AKS+ FY A + +T LD G + T+ R + E
Sbjct: 10 VVVEDMAKSLEFYRKLGVEIPAEADSAPHTEAVLD-----GGIRLAWDTVETVRSYDPEW 64
Query: 51 DELTGSVQTPSSPQRQPIEVCFA-YADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRD 109
Q P+ R I F A VD Y V+ G +P + WGQ+ V+D
Sbjct: 65 -------QAPTGGHRFAIAFEFPDTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKD 117
Query: 110 INGIVVRM 117
+G VV +
Sbjct: 118 PDGNVVDL 125
>pdb|1KMZ|A Chain A, Molecular Basis Of Mitomycin C Resictance In Streptomyces:
Crystal Structures Of The Mrd Protein With And Without A
Drug Derivative
Length = 130
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 1 IYVTDVAKSVAFY----------AKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHET 50
+ V D+AKS+ FY A + +T LD G + T+ R + E
Sbjct: 10 VVVEDMAKSLEFYRKLGVEIPAEADSAPHTEAVLD-----GGIRLAWDTVETVRSYDPEW 64
Query: 51 DELTGSVQTPSSPQRQPIEVCFA-YADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRD 109
Q P+ R I F A VD Y V+ G +P + WGQ+ V+D
Sbjct: 65 -------QAPTGGHRFAIAFEFPDTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKD 117
Query: 110 INGIVVRM 117
+G VV +
Sbjct: 118 PDGNVVDL 125
>pdb|1KLL|A Chain A, Molecular Basis Of Mitomycin C Resictance In Streptomyces:
Crystal Structures Of The Mrd Protein With And Without A
Drug Derivative
Length = 130
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 23/128 (17%)
Query: 1 IYVTDVAKSVAFY----------AKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHET 50
+ V D AKS FY A + +T LD G + T+ R + E
Sbjct: 10 VVVEDXAKSXEFYRKXGVEIPAEADSAPHTEAVLD-----GGIRLAWDTVETVRSYDPEW 64
Query: 51 DELTGSVQTPSSPQRQPIEVCFA-YADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRD 109
Q P+ R I F A VD Y V+ G +P + WGQ+ V+D
Sbjct: 65 -------QAPTGGHRFAIAFEFPDTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKD 117
Query: 110 INGIVVRM 117
+G VV +
Sbjct: 118 PDGNVVDL 125
>pdb|1SS4|A Chain A, Crystal Structure Of The Glyoxalase Family Protein
Apc24694 From Bacillus Cereus
pdb|1SS4|B Chain B, Crystal Structure Of The Glyoxalase Family Protein
Apc24694 From Bacillus Cereus
Length = 153
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 68 IEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRM 117
+ V F D+D R ++GA V E E ++ Y+R + GI++ +
Sbjct: 97 LRVXFTVEDIDEXVSRLTKHGAELVGEVVQYENSYRLCYIRGVEGILIGL 146
>pdb|2DEP|A Chain A, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
pdb|2DEP|B Chain B, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
Length = 356
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 33 LESGQTTIAFTRLHQHETDELTG-SVQTPSSPQRQPIEVCFAYADVDAAYKRAVENG 88
+E G TT L++ + L + P+S QP E F +AD D + A ENG
Sbjct: 22 IEPGYTTGQIAELYKKHVNMLVAENAMKPAS--LQPTEGNFQWADADRIVQFAKENG 76
>pdb|3AI7|A Chain A, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|B Chain B, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|C Chain C, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|D Chain D, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|E Chain E, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|F Chain F, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|G Chain G, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|H Chain H, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
Length = 831
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 18 DYTVRTL-DHSHRWGELESGQTTIAFTR 44
DY V+ + ++ H WG+LE+ +T A+TR
Sbjct: 393 DYEVKEVAEYGHGWGQLEATRTLGAYTR 420
>pdb|1SQD|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1TFZ|A Chain A, Structural Basis For Herbicidal Inhibitor Selectivity
Revealed By Comparison Of Crystal Structures Of Plant
And Mammalian 4- Hydroxyphenylpyruvate Dioxygenases
pdb|1TG5|A Chain A, Crystal Structures Of Plant 4-Hydroxyphenylpyruvate
Dioxygenases Complexed With Das645
Length = 424
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 76 DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120
D ++A+ +V NGA+P S P + V+ +V+R SY
Sbjct: 127 DAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSY 171
>pdb|3IJ5|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
pdb|3IJ5|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
pdb|3IJ5|C Chain C, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
pdb|3IJ5|D Chain D, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
Length = 211
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 15 KAFD----YTVRTLDHS---------HRWGELESGQTTIAFTRLHQHETDELTGSVQTPS 61
KAF+ Y +R L S R LE T+ T L+Q ++D+L + +
Sbjct: 75 KAFNVRDGYGIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQSDKLVAYHELLA 134
Query: 62 SPQRQPIEVCFAYADV 77
+ Q QP +V + D+
Sbjct: 135 TLQCQPEQVAYIGDDL 150
>pdb|1SP9|A Chain A, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP9|B Chain B, 4-hydroxyphenylpyruvate Dioxygenase
Length = 445
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 76 DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120
D ++A+ +V NGA+P S P + V+ +V+R SY
Sbjct: 148 DAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSY 192
>pdb|3BT3|A Chain A, Crystal Structure Of A Glyoxalase-Related Enzyme From
Clostridium Phytofermentans
pdb|3BT3|B Chain B, Crystal Structure Of A Glyoxalase-Related Enzyme From
Clostridium Phytofermentans
Length = 148
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 77 VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122
+DA +K ENG +S+ + WG + + +G ++R +Q
Sbjct: 101 IDALHKYVKENGWDQISDIYTQPWGARECSITTTDGCILRFFESIQ 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,805,403
Number of Sequences: 62578
Number of extensions: 147168
Number of successful extensions: 348
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 17
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)