BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045980
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P64742|Y911_MYCBO Uncharacterized protein Mb0911c OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb0911c PE=4 SV=1
Length = 170
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGS-VQT 59
+ V D A ++ FY KAFD + + FT + + ++ G T
Sbjct: 31 LVVDDAASAIDFYVKAFDAVELGRVPGPDGKLIHAALRINGFTVMLNDDVPQMCGGKSMT 90
Query: 60 PSSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRD 109
P+S P+ + DVDA ++RA+ GA V+ ED+ WG + G V D
Sbjct: 91 PTSLGGTPVTIHLTVTDVDAKFQRALNAGATVVTALEDQLWGDRYGVVAD 140
>sp|P64741|Y887_MYCTU Uncharacterized protein Rv0887c/MT0910 OS=Mycobacterium
tuberculosis GN=Rv0887c PE=4 SV=1
Length = 170
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGS-VQT 59
+ V D A ++ FY KAFD + + FT + + ++ G T
Sbjct: 31 LVVDDAASAIDFYVKAFDAVELGRVPGPDGKLIHAALRINGFTVMLNDDVPQMCGGKSMT 90
Query: 60 PSSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRD 109
P+S P+ + DVDA ++RA+ GA V+ ED+ WG + G V D
Sbjct: 91 PTSLGGTPVTIHLTVTDVDAKFQRALNAGATVVTALEDQLWGDRYGVVAD 140
>sp|O07918|YRAH_BACSU Uncharacterized protein YraH OS=Bacillus subtilis (strain 168)
GN=yraH PE=3 SV=1
Length = 128
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTP 60
+ V D KSV FY + + L++ + ++G+T I L + E+ G +
Sbjct: 8 LLVNDFKKSVEFYKDSLGLPISWLENEMEYALFDNGETKIEL--LSRETMAEIVGEEKKS 65
Query: 61 SSPQRQ-PIEVCFAYADVDAAYKRAVENGAVPVSEPED-KEWGQKVGYVRD 109
+ Q + F DVD Y E G ++P D KEW +V + RD
Sbjct: 66 LEGEAQSKFLLQFKVEDVDKTYDDLHEKGVKCENKPHDRKEWSARVAHFRD 116
>sp|P94533|YSFE_BACSU Uncharacterized protein YsfE OS=Bacillus subtilis (strain 168)
GN=ysfE PE=4 SV=1
Length = 80
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 45 LHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKV 104
L+ E+ ++ P + E+ F +V+A KR E G + EP+ K WGQ V
Sbjct: 3 LNTRESARDITALDIPDTSASNTFEIGFVTENVEAVIKRMREQGVSIIGEPKVKPWGQTV 62
Query: 105 GYVRDINGIVVRMGSYVQ 122
Y+ D +G + + S ++
Sbjct: 63 AYIADPDGHYIEICSPME 80
>sp|P10870|SNF3_YEAST High-affinity glucose transporter SNF3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNF3 PE=1
SV=3
Length = 884
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 48 HETDELTGSVQTPSSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKE 99
H TD+ TGS++TP+S QRQ + V +++ ++ SEP K+
Sbjct: 41 HTTDDTTGSIRTPTSLQRQNSDRQSNMTSVFTDDISTIDDNSILFSEPPQKQ 92
>sp|Q96X22|HPPD_MAGO7 4-hydroxyphenylpyruvate dioxygenase OS=Magnaporthe oryzae (strain
70-15 / ATCC MYA-4617 / FGSC 8958) GN=HPD4 PE=3 SV=1
Length = 419
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 69 EVCFAYADVDAAYKRAVENGAVPVSEPE---DKEWG 101
+VCF +V Y+RAV+ GAV ++ P+ DKE G
Sbjct: 130 DVCFEVDNVQGVYERAVQQGAVSIAPPKTLSDKEHG 165
>sp|Q8XVV4|MNMA_RALSO tRNA-specific 2-thiouridylase MnmA OS=Ralstonia solanacearum
(strain GMI1000) GN=mnmA PE=3 SV=1
Length = 370
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKTRVREIAAEIGLPNARKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K GQ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPIRTPDGKTIGQHIG 231
>sp|O31535|YETH_BACSU Uncharacterized protein YetH OS=Bacillus subtilis (strain 168)
GN=yetH PE=4 SV=1
Length = 120
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSH----RWGELESGQTTIAFTRLHQHETDELTGS 56
+YV D K+ F+ + + + DH W E+ A TRL + + GS
Sbjct: 10 VYVEDQQKAKQFWTEKVGFDIAA-DHPMGPEASWLEVAPKG---AETRLVIYPKAMMKGS 65
Query: 57 VQTPSSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVR 116
Q +S + F D+ Y++ NG + EP EWG V + +D +G V
Sbjct: 66 EQMKAS-------IVFECEDIFGTYEKMKTNGVEFLGEPNQMEWGTFVQF-KDEDGNVFL 117
Query: 117 M 117
+
Sbjct: 118 L 118
>sp|B2UC85|MNMA_RALPJ tRNA-specific 2-thiouridylase MnmA OS=Ralstonia pickettii (strain
12J) GN=mnmA PE=3 SV=1
Length = 370
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKTKVREIAAEIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPIKTPDGKTIGEHIG 231
>sp|Q5BKL0|HPPD_XENTR 4-hydroxyphenylpyruvate dioxygenase OS=Xenopus tropicalis GN=hpd
PE=2 SV=1
Length = 394
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 24/120 (20%)
Query: 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTP 60
+V + ++ +FY F + + LE+G + H + D++ Q+P
Sbjct: 24 FWVGNAKQAASFYCDKFGF------EPCAYKGLETGSRDVV---SHAIKQDKIIFVFQSP 74
Query: 61 SSPQRQPI------------EVCFAYADVDAAYKRAVENGAVPVSEP--EDKEWGQKVGY 106
+P Q + +V F D D +++A ++GAV V EP E+ E G KV Y
Sbjct: 75 LNPGNQEMGQHMIKHGDGVKDVAFQVEDCDFLFQKAKDHGAVVVREPWIEEDE-GGKVKY 133
>sp|A4JBM2|MNMA_BURVG tRNA-specific 2-thiouridylase MnmA OS=Burkholderia vietnamiensis
(strain G4 / LMG 22486) GN=mnmA PE=3 SV=1
Length = 384
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEMPKTKVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKRVGEHIG 231
>sp|Q4K6S8|QUEA_PSEF5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
GN=queA PE=3 SV=1
Length = 354
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 20 TVRTLDHSHRWGELE--SGQTTI-AFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD 76
+VR+L+ + R G L+ SG T I + H D L + P S + Y +
Sbjct: 253 SVRSLESAARDGVLKPFSGDTDIFIYPGRPFHVVDALVTNFHLPESTLLMLVSAFAGYPE 312
Query: 77 VDAAYKRAVENG 88
AAY+ AVENG
Sbjct: 313 TMAAYRAAVENG 324
>sp|Q3K795|QUEA_PSEPF S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Pseudomonas fluorescens (strain Pf0-1) GN=queA PE=3
SV=1
Length = 349
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 20 TVRTLDHSHRWGELE--SGQTTI-AFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD 76
+VR+L+ + R G L+ SG T I + H D L + P S + Y +
Sbjct: 253 SVRSLESAARDGVLKPFSGDTDIFIYPGRPFHVVDALVTNFHLPESTLLMLVSAFAGYPE 312
Query: 77 VDAAYKRAVENG 88
AAYK AV+NG
Sbjct: 313 TMAAYKAAVDNG 324
>sp|Q9S2F4|HPPD_STRCO 4-hydroxyphenylpyruvate dioxygenase OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=hpd PE=3 SV=1
Length = 381
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 33 LESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAAYKRAVENGAVPV 92
LESG FT + + TD T Q + +++ D AA+ AVE+GA +
Sbjct: 66 LESGSARFVFTSVIKPSTDWGTFLAQHVAEHGDGVVDLAIEVPDARAAHAYAVEHGARSL 125
Query: 93 SEPEDKEWGQKVGYVRDINGIVV 115
+EP + V+D +G VV
Sbjct: 126 AEPHE---------VKDEHGTVV 139
>sp|Q1LJ45|MNMA_RALME tRNA-specific 2-thiouridylase MnmA OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=mnmA PE=3 SV=1
Length = 359
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + E+ + P++ ++ +CF
Sbjct: 141 KAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVREIAAEIGLPNAKKKDSTGICFIG 200
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ PE K G+ +G
Sbjct: 201 ERPFRDF---LNRYLPTQPGPMKTPEGKVVGEHIG 232
>sp|Q0BI73|MNMA_BURCM tRNA-specific 2-thiouridylase MnmA OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=mnmA PE=3 SV=1
Length = 384
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKVIGEHIG 231
>sp|B1YTE9|MNMA_BURA4 tRNA-specific 2-thiouridylase MnmA OS=Burkholderia ambifaria
(strain MC40-6) GN=mnmA PE=3 SV=1
Length = 389
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKVIGEHIG 231
>sp|B4EE50|MNMA_BURCJ tRNA-specific 2-thiouridylase MnmA OS=Burkholderia cepacia (strain
J2315 / LMG 16656) GN=mnmA PE=3 SV=1
Length = 391
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKVVGEHIG 231
>sp|A1V076|MNMA_BURMS tRNA-specific 2-thiouridylase MnmA OS=Burkholderia mallei (strain
SAVP1) GN=mnmA PE=3 SV=1
Length = 383
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKTVGEHIG 231
>sp|Q62H98|MNMA_BURMA tRNA-specific 2-thiouridylase MnmA OS=Burkholderia mallei (strain
ATCC 23344) GN=mnmA PE=3 SV=1
Length = 383
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKTVGEHIG 231
>sp|A2S5A6|MNMA_BURM9 tRNA-specific 2-thiouridylase MnmA OS=Burkholderia mallei (strain
NCTC 10229) GN=mnmA PE=3 SV=1
Length = 383
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKTVGEHIG 231
>sp|A3MP84|MNMA_BURM7 tRNA-specific 2-thiouridylase MnmA OS=Burkholderia mallei (strain
NCTC 10247) GN=mnmA PE=3 SV=1
Length = 383
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKTVGEHIG 231
>sp|Q2SZ45|MNMA_BURTA tRNA-specific 2-thiouridylase MnmA OS=Burkholderia thailandensis
(strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
GN=mnmA PE=3 SV=1
Length = 386
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTQPGPMKTPDGKTVGEHIG 231
>sp|A6V0T8|QUEA_PSEA7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Pseudomonas aeruginosa (strain PA7) GN=queA PE=3 SV=1
Length = 347
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 20 TVRTLDHSHRWGELE--SGQTTI-AFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD 76
+VR+L+ + R GEL+ SG T I + H D L + P S + Y +
Sbjct: 253 SVRSLESAARDGELKPFSGDTDIFIYPGRPFHVVDALVTNFHLPESTLLMLVSAFAGYPE 312
Query: 77 VDAAYKRAVENG 88
AAY AVE G
Sbjct: 313 TMAAYAAAVEQG 324
>sp|A0K4M4|MNMA_BURCH tRNA-specific 2-thiouridylase MnmA OS=Burkholderia cenocepacia
(strain HI2424) GN=mnmA PE=3 SV=1
Length = 391
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKVVGEHIG 231
>sp|B1JVW3|MNMA_BURCC tRNA-specific 2-thiouridylase MnmA OS=Burkholderia cenocepacia
(strain MC0-3) GN=mnmA PE=3 SV=1
Length = 391
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKVVGEHIG 231
>sp|Q1BZ27|MNMA_BURCA tRNA-specific 2-thiouridylase MnmA OS=Burkholderia cenocepacia
(strain AU 1054) GN=mnmA PE=3 SV=1
Length = 391
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKVVGEHIG 231
>sp|Q63QY5|MNMA_BURPS tRNA-specific 2-thiouridylase MnmA OS=Burkholderia pseudomallei
(strain K96243) GN=mnmA PE=3 SV=1
Length = 383
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKTVGEHIG 231
>sp|A3NDE4|MNMA_BURP6 tRNA-specific 2-thiouridylase MnmA OS=Burkholderia pseudomallei
(strain 668) GN=mnmA PE=3 SV=1
Length = 383
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 15 KAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF-- 72
KAFD+T HR + + +T + + E+ + P++ ++ +CF
Sbjct: 140 KAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQIGLPNAKKKDSTGICFIG 199
Query: 73 --AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVG 105
+ D R + P+ P+ K G+ +G
Sbjct: 200 ERPFRDF---LNRYLPTKPGPMKTPDGKTVGEHIG 231
>sp|Q4WPV8|HPPD2_ASPFU Probable 4-hydroxyphenylpyruvate dioxygenase 2 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=AFUA_4G10620 PE=3 SV=1
Length = 406
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 75 ADVDAAYKRAVENGAVPVSEP 95
D++A +KRAV++GA PV+ P
Sbjct: 125 GDIEAVWKRAVDHGAAPVAAP 145
>sp|Q9L6W2|QUEA_PSEU2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Pseudomonas syringae pv. syringae (strain B728a)
GN=queA PE=3 SV=2
Length = 354
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 20 TVRTLDHSHRWGELES--GQTTI-AFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD 76
+VR+L+ + R GEL+S G T I + H D L + P S + Y +
Sbjct: 253 SVRSLESAARDGELKSFSGDTDIFIYPGRPFHVVDALVTNFHLPESTLLMLVSAFAGYPE 312
Query: 77 VDAAYKRAVENG 88
AAY A+E+G
Sbjct: 313 TMAAYAAAIEHG 324
>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5
PE=1 SV=2
Length = 546
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 31 GELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFA------YADVDAAYKRA 84
G L G T I ++ HE G Q S P PI V A D +
Sbjct: 252 GLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNGADQIKAKYDLSSMHT 311
Query: 85 VENGAVPVSEPEDKEWGQKVGYVRDING 112
V G P+S+ + + +K V+ + G
Sbjct: 312 VLCGGAPLSKEVTEGFAEKYPTVKILQG 339
>sp|Q9LJ68|FB162_ARATH F-box protein At3g18980 OS=Arabidopsis thaliana GN=At3g18980 PE=1
SV=1
Length = 415
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 6 VAKSVAFYAKAFDYTVRTLDHSHRWGE-LESGQTTIAFTRLHQHETDELTGSVQTPSSPQ 64
+ K + FY D + L++S RW + G T +T ++ +T + G++ +S +
Sbjct: 168 IYKILCFYPNGQDTEIYELNYSDRWTRTIPDGDLTPGWTLIYSEQTVSMNGNLYLFASEK 227
Query: 65 RQP 67
+P
Sbjct: 228 SKP 230
>sp|Q48M15|QUEA_PSE14 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6) GN=queA PE=3 SV=1
Length = 354
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 20 TVRTLDHSHRWGELES--GQTTI-AFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD 76
+VR+L+ + R GEL+S G T I + H D L + P S + Y +
Sbjct: 253 SVRSLESAARDGELKSFSGDTDIFIYPGRPFHVVDALVTNFHLPESTLLMLVSAFAGYPE 312
Query: 77 VDAAYKRAVENG 88
AAY A+E+G
Sbjct: 313 TMAAYAGAIEHG 324
>sp|A6VYN2|QUEA_MARMS S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Marinomonas sp. (strain MWYL1) GN=queA PE=3 SV=1
Length = 353
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 20 TVRTLDHSHRWGELE--SGQTTIAFTRLHQHET-DELTGSVQTPSSPQRQPIEVCFAYAD 76
+VR+L+ + + GE+ G T+I ++ +T D L + P S I Y
Sbjct: 257 SVRSLESASQSGEIAPMQGDTSIFIYPGYEFKTVDALVTNFHLPESTLIMLISAFAGYDH 316
Query: 77 VDAAYKRAVE 86
V AAYK+AVE
Sbjct: 317 VMAAYKKAVE 326
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,712,303
Number of Sequences: 539616
Number of extensions: 1785378
Number of successful extensions: 4511
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4502
Number of HSP's gapped (non-prelim): 39
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)