Query 045980
Match_columns 125
No_of_seqs 114 out of 1527
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 07:30:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07264 Glo_EDI_BRP_like_15 Th 99.9 4.2E-24 9.1E-29 125.5 14.8 119 1-120 6-125 (125)
2 cd08355 Glo_EDI_BRP_like_14 Th 99.9 1.2E-22 2.5E-27 119.1 14.8 114 1-120 5-122 (122)
3 cd08342 HPPD_N_like N-terminal 99.9 1.5E-22 3.2E-27 120.9 13.0 118 1-122 6-125 (136)
4 cd08350 BLMT_like BLMT, a bleo 99.9 3.8E-22 8.3E-27 116.7 13.8 105 1-120 8-119 (120)
5 cd07246 Glo_EDI_BRP_like_8 Thi 99.9 9.4E-22 2E-26 114.9 14.7 111 1-119 7-121 (122)
6 cd08359 Glo_EDI_BRP_like_22 Th 99.9 6.7E-22 1.4E-26 115.3 13.9 111 1-119 7-119 (119)
7 cd08349 BLMA_like Bleomycin bi 99.9 1.6E-21 3.5E-26 112.4 14.1 108 1-119 4-112 (112)
8 cd09011 Glo_EDI_BRP_like_23 Th 99.9 1.1E-21 2.5E-26 114.7 12.6 111 1-120 8-119 (120)
9 cd08356 Glo_EDI_BRP_like_17 Th 99.9 4.1E-21 8.9E-26 111.3 13.2 102 1-119 7-113 (113)
10 PF12681 Glyoxalase_2: Glyoxal 99.9 1.5E-21 3.2E-26 112.0 11.1 104 1-118 1-108 (108)
11 PLN02367 lactoylglutathione ly 99.9 1E-20 2.2E-25 120.3 14.8 121 1-122 81-224 (233)
12 cd07247 SgaA_N_like N-terminal 99.9 9.8E-21 2.1E-25 109.6 13.4 107 1-119 6-114 (114)
13 cd07238 Glo_EDI_BRP_like_5 Thi 99.9 1.4E-20 3.1E-25 108.7 13.7 103 1-120 6-111 (112)
14 cd07235 MRD Mitomycin C resist 99.9 1.1E-20 2.4E-25 110.7 13.3 112 1-118 6-121 (122)
15 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 1.6E-20 3.5E-25 112.7 13.6 116 1-120 9-141 (142)
16 cd07261 Glo_EDI_BRP_like_11 Th 99.9 2.4E-20 5.2E-25 108.0 13.0 107 1-119 4-114 (114)
17 PRK10291 glyoxalase I; Provisi 99.9 8.8E-20 1.9E-24 107.9 14.5 114 1-124 2-124 (129)
18 cd08352 Glo_EDI_BRP_like_1 Thi 99.9 1.3E-19 2.7E-24 106.1 14.4 112 1-119 9-125 (125)
19 PRK11478 putative lyase; Provi 99.9 1.1E-19 2.5E-24 107.2 14.1 112 1-119 12-128 (129)
20 cd09012 Glo_EDI_BRP_like_24 Th 99.8 7.3E-20 1.6E-24 107.5 12.8 114 1-119 6-123 (124)
21 cd07251 Glo_EDI_BRP_like_10 Th 99.8 8.5E-20 1.8E-24 106.5 12.9 114 1-119 4-120 (121)
22 PLN03042 Lactoylglutathione ly 99.8 2.3E-19 4.9E-24 111.7 15.2 122 1-123 33-177 (185)
23 cd07263 Glo_EDI_BRP_like_16 Th 99.8 1.6E-19 3.4E-24 104.8 13.4 110 1-119 4-119 (119)
24 cd07253 Glo_EDI_BRP_like_2 Thi 99.8 2.9E-19 6.4E-24 104.5 14.0 113 1-120 9-125 (125)
25 PRK04101 fosfomycin resistance 99.8 2.1E-19 4.6E-24 107.6 13.6 109 1-121 10-120 (139)
26 cd08357 Glo_EDI_BRP_like_18 Th 99.8 1.2E-19 2.6E-24 106.5 12.3 117 1-120 5-125 (125)
27 cd08363 FosB FosB, a fosfomyci 99.8 1.6E-19 3.5E-24 107.2 12.7 110 1-122 6-117 (131)
28 cd08354 Glo_EDI_BRP_like_13 Th 99.8 4E-19 8.7E-24 103.8 13.3 114 1-120 6-122 (122)
29 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 3.3E-19 7.2E-24 104.4 12.6 111 1-118 7-125 (125)
30 TIGR03081 metmalonyl_epim meth 99.8 1.7E-19 3.6E-24 106.2 11.0 115 1-119 7-128 (128)
31 TIGR03645 glyox_marine lactoyl 99.8 7.7E-19 1.7E-23 107.7 14.0 118 1-123 10-154 (162)
32 COG2764 PhnB Uncharacterized p 99.8 1.1E-18 2.5E-23 102.8 14.0 115 1-124 6-135 (136)
33 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 4.9E-19 1.1E-23 101.8 12.1 107 1-117 6-114 (114)
34 cd08351 ChaP_like ChaP, an enz 99.8 6.9E-19 1.5E-23 103.3 12.8 102 1-120 10-121 (123)
35 cd08345 Fosfomycin_RP Fosfomyc 99.8 6.3E-19 1.4E-23 101.8 12.4 105 1-119 4-110 (113)
36 cd07233 Glyoxalase_I Glyoxalas 99.8 1.7E-18 3.6E-23 101.0 13.4 108 1-118 6-121 (121)
37 cd08347 PcpA_C_like C-terminal 99.8 3.1E-18 6.7E-23 104.5 14.2 110 1-122 7-122 (157)
38 cd06587 Glo_EDI_BRP_like This 99.8 5.1E-18 1.1E-22 96.8 13.3 107 1-117 4-112 (112)
39 cd08364 FosX FosX, a fosfomyci 99.8 4.1E-18 8.9E-23 101.1 13.1 106 1-120 10-122 (131)
40 cd07240 ED_TypeI_classII_N N-t 99.8 4.6E-18 9.9E-23 98.6 12.7 102 1-121 8-115 (117)
41 cd07255 Glo_EDI_BRP_like_12 Th 99.8 1E-17 2.2E-22 98.3 13.7 111 1-124 8-123 (125)
42 cd08362 BphC5-RrK37_N_like N-t 99.8 5.9E-18 1.3E-22 98.7 12.4 106 1-122 9-119 (120)
43 TIGR00068 glyox_I lactoylgluta 99.8 6.1E-18 1.3E-22 102.5 12.6 114 1-122 23-143 (150)
44 cd07265 2_3_CTD_N N-terminal d 99.8 7.9E-18 1.7E-22 98.6 12.6 104 1-122 10-121 (122)
45 cd07254 Glo_EDI_BRP_like_20 Th 99.8 1.7E-17 3.7E-22 96.8 13.5 108 1-122 7-119 (120)
46 cd08348 BphC2-C3-RGP6_C_like T 99.8 3.6E-17 7.9E-22 97.2 14.9 111 1-123 7-123 (134)
47 cd07244 FosA FosA, a Fosfomyci 99.8 1.2E-17 2.5E-22 97.8 12.3 102 1-120 7-110 (121)
48 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 3.7E-17 8E-22 96.3 14.3 112 1-120 7-128 (128)
49 PRK06724 hypothetical protein; 99.8 1.6E-17 3.5E-22 98.1 12.7 103 1-121 13-124 (128)
50 cd08343 ED_TypeI_classII_C C-t 99.8 2.2E-17 4.7E-22 97.9 13.2 107 1-123 5-120 (131)
51 cd06588 PhnB_like Escherichia 99.8 2.3E-17 5.1E-22 97.5 12.8 106 1-118 5-128 (128)
52 cd07243 2_3_CTD_C C-terminal d 99.8 2.4E-17 5.2E-22 99.2 13.0 104 1-119 12-124 (143)
53 cd07267 THT_Oxygenase_N N-term 99.8 4.8E-17 1E-21 94.1 13.4 103 1-121 9-111 (113)
54 cd08361 PpCmtC_N N-terminal do 99.8 2.2E-17 4.9E-22 97.1 12.1 102 1-122 12-121 (124)
55 cd07249 MMCE Methylmalonyl-CoA 99.8 1.6E-17 3.5E-22 97.6 11.2 114 1-119 6-128 (128)
56 cd09013 BphC-JF8_N_like N-term 99.8 3.6E-17 7.9E-22 95.6 12.6 102 1-122 12-120 (121)
57 cd08360 MhqB_like_C C-terminal 99.8 4.9E-17 1.1E-21 96.8 13.2 105 1-121 9-121 (134)
58 cd08344 MhqB_like_N N-terminal 99.8 2.4E-17 5.1E-22 95.3 11.5 100 1-120 8-109 (112)
59 cd07252 BphC1-RGP6_N_like N-te 99.8 4E-17 8.6E-22 95.4 12.5 102 1-120 8-117 (120)
60 cd08346 PcpA_N_like N-terminal 99.8 3.1E-17 6.7E-22 96.1 11.9 108 1-118 7-126 (126)
61 cd07262 Glo_EDI_BRP_like_19 Th 99.8 6.5E-17 1.4E-21 94.7 12.9 107 1-119 6-123 (123)
62 cd07257 THT_oxygenase_C The C- 99.8 3.7E-17 8.1E-22 99.4 12.0 109 1-121 7-126 (153)
63 cd07266 HPCD_N_class_II N-term 99.8 3.9E-17 8.5E-22 95.4 11.6 103 1-122 10-120 (121)
64 cd07239 BphC5-RK37_C_like C-te 99.7 6.3E-17 1.4E-21 97.5 11.7 104 1-122 10-119 (144)
65 cd07258 PpCmtC_C C-terminal do 99.7 8.7E-17 1.9E-21 96.5 12.2 106 1-121 5-115 (141)
66 COG3324 Predicted enzyme relat 99.7 1.6E-16 3.5E-21 92.4 12.2 109 1-121 15-126 (127)
67 cd07237 BphC1-RGP6_C_like C-te 99.7 1.3E-16 2.7E-21 97.2 12.3 104 1-120 15-131 (154)
68 PLN02300 lactoylglutathione ly 99.7 1.6E-16 3.4E-21 105.5 13.3 114 1-122 30-150 (286)
69 cd09014 BphC-JF8_C_like C-term 99.7 1.8E-16 3.8E-21 97.6 12.5 106 1-120 12-127 (166)
70 PF00903 Glyoxalase: Glyoxalas 99.7 1.1E-16 2.4E-21 93.8 8.2 112 1-117 7-128 (128)
71 cd07256 HPCD_C_class_II C-term 99.7 1.3E-15 2.9E-20 93.3 12.3 103 1-120 9-123 (161)
72 KOG2944 Glyoxalase [Carbohydra 99.7 1.3E-15 2.9E-20 90.2 11.4 118 1-120 28-168 (170)
73 cd08358 Glo_EDI_BRP_like_21 Th 99.7 7.3E-15 1.6E-19 86.4 12.4 100 1-119 8-126 (127)
74 COG3607 Predicted lactoylgluta 99.7 2.5E-15 5.4E-20 85.7 9.5 116 1-121 9-128 (133)
75 PRK10148 hypothetical protein; 99.7 1.6E-14 3.4E-19 87.2 13.5 104 5-121 12-142 (147)
76 TIGR03213 23dbph12diox 2,3-dih 99.6 6.2E-15 1.3E-19 97.9 11.8 103 1-121 9-119 (286)
77 TIGR03211 catechol_2_3 catecho 99.6 1.1E-14 2.4E-19 97.3 12.4 102 1-122 10-120 (303)
78 PLN02300 lactoylglutathione ly 99.6 2.7E-14 5.9E-19 94.9 13.9 112 1-122 160-280 (286)
79 TIGR03213 23dbph12diox 2,3-dih 99.6 1.9E-14 4.1E-19 95.6 13.1 102 1-119 148-262 (286)
80 TIGR03211 catechol_2_3 catecho 99.6 1.4E-14 3.1E-19 96.8 12.5 105 1-119 151-264 (303)
81 COG3565 Predicted dioxygenase 99.6 1.6E-14 3.6E-19 81.3 10.5 117 1-121 10-130 (138)
82 TIGR02295 HpaD 3,4-dihydroxyph 99.6 2.1E-14 4.5E-19 95.6 12.0 101 1-122 10-117 (294)
83 TIGR02295 HpaD 3,4-dihydroxyph 99.6 1.4E-13 3E-18 91.7 12.2 103 1-120 142-256 (294)
84 COG2514 Predicted ring-cleavag 99.5 2.4E-13 5.3E-18 87.3 11.4 111 1-124 16-130 (265)
85 PF13669 Glyoxalase_4: Glyoxal 99.4 5.7E-12 1.2E-16 72.4 7.7 88 1-96 5-98 (109)
86 PRK01037 trmD tRNA (guanine-N( 99.3 1E-11 2.2E-16 83.1 8.8 99 1-120 253-354 (357)
87 TIGR01263 4HPPD 4-hydroxypheny 99.3 3E-10 6.5E-15 77.7 12.4 93 1-97 8-103 (353)
88 cd07250 HPPD_C_like C-terminal 99.2 8E-11 1.7E-15 74.1 6.7 96 1-97 9-114 (191)
89 COG0346 GloA Lactoylglutathion 99.2 1.2E-10 2.5E-15 68.1 6.0 116 1-119 8-138 (138)
90 PF06983 3-dmu-9_3-mt: 3-demet 99.0 9.6E-08 2.1E-12 55.5 12.3 92 4-118 11-116 (116)
91 TIGR01263 4HPPD 4-hydroxypheny 98.9 6.6E-09 1.4E-13 71.1 6.5 120 1-121 164-311 (353)
92 KOG2943 Predicted glyoxalase [ 98.8 9E-08 2E-12 61.1 8.8 105 2-122 24-145 (299)
93 PF14506 CppA_N: CppA N-termin 98.8 3E-07 6.4E-12 52.7 9.9 109 1-122 6-116 (125)
94 KOG2943 Predicted glyoxalase [ 98.8 4.5E-08 9.7E-13 62.4 7.2 110 1-120 155-270 (299)
95 PLN02875 4-hydroxyphenylpyruva 98.6 5.7E-07 1.2E-11 62.2 8.0 120 1-121 186-341 (398)
96 PF14696 Glyoxalase_5: Hydroxy 98.5 1.2E-06 2.7E-11 52.2 6.8 114 2-123 16-129 (139)
97 PLN02875 4-hydroxyphenylpyruva 98.4 7.8E-06 1.7E-10 56.7 11.4 120 1-120 6-151 (398)
98 KOG0638 4-hydroxyphenylpyruvat 98.4 6.2E-07 1.4E-11 59.5 5.7 107 2-111 24-139 (381)
99 COG2514 Predicted ring-cleavag 98.3 7E-06 1.5E-10 53.5 7.8 68 1-77 174-243 (265)
100 COG3185 4-hydroxyphenylpyruvat 97.9 1.6E-05 3.5E-10 53.6 4.3 93 2-97 176-276 (363)
101 PF13669 Glyoxalase_4: Glyoxal 97.6 0.00025 5.5E-09 40.5 5.3 57 68-124 1-59 (109)
102 PF13468 Glyoxalase_3: Glyoxal 97.5 0.00014 3E-09 45.1 3.7 90 1-90 6-101 (175)
103 COG3865 Uncharacterized protei 97.5 0.0065 1.4E-07 36.3 11.2 95 4-119 14-123 (151)
104 PF15067 FAM124: FAM124 family 97.5 0.0021 4.5E-08 41.4 8.7 97 1-117 134-235 (236)
105 COG3185 4-hydroxyphenylpyruvat 97.0 0.031 6.7E-07 38.3 10.4 105 2-112 29-142 (363)
106 cd08353 Glo_EDI_BRP_like_7 Thi 95.6 0.22 4.7E-06 29.4 7.9 56 66-121 3-70 (142)
107 KOG0638 4-hydroxyphenylpyruvat 95.5 0.0071 1.5E-07 40.8 1.3 57 64-120 260-337 (381)
108 TIGR03645 glyox_marine lactoyl 94.8 0.42 9.2E-06 29.2 7.7 57 66-122 4-79 (162)
109 cd08352 Glo_EDI_BRP_like_1 Thi 94.7 0.41 8.9E-06 27.1 7.7 55 66-120 3-58 (125)
110 PF13670 PepSY_2: Peptidase pr 94.6 0.18 4E-06 27.3 5.1 48 76-124 30-77 (83)
111 PF13468 Glyoxalase_3: Glyoxal 94.2 0.052 1.1E-06 33.6 2.6 52 69-121 3-55 (175)
112 PF14507 CppA_C: CppA C-termin 93.9 0.074 1.6E-06 30.1 2.6 87 1-117 11-100 (101)
113 cd07249 MMCE Methylmalonyl-CoA 93.9 0.66 1.4E-05 26.5 7.1 54 68-122 2-57 (128)
114 PRK11478 putative lyase; Provi 91.7 1.5 3.3E-05 25.1 7.3 55 66-120 6-61 (129)
115 cd06587 Glo_EDI_BRP_like This 91.5 1.3 2.9E-05 24.0 6.0 51 69-122 1-52 (112)
116 cd07233 Glyoxalase_I Glyoxalas 91.0 1.8 3.8E-05 24.4 6.3 53 68-120 2-58 (121)
117 cd08346 PcpA_N_like N-terminal 90.8 1.9 4.1E-05 24.4 7.1 55 67-121 2-61 (126)
118 cd07241 Glo_EDI_BRP_like_3 Thi 89.9 2.3 5E-05 24.0 7.5 52 68-119 3-55 (125)
119 cd07242 Glo_EDI_BRP_like_6 Thi 89.3 2.7 5.9E-05 24.0 6.3 51 67-122 2-56 (128)
120 TIGR03081 metmalonyl_epim meth 87.8 3.5 7.6E-05 23.4 6.8 52 68-120 3-55 (128)
121 cd04882 ACT_Bt0572_2 C-termina 87.6 2 4.4E-05 21.4 4.2 27 66-92 39-65 (65)
122 cd07250 HPPD_C_like C-terminal 86.5 4 8.8E-05 25.8 5.8 57 66-122 3-65 (191)
123 cd08342 HPPD_N_like N-terminal 86.0 5.1 0.00011 23.5 6.8 50 68-120 2-52 (136)
124 cd08347 PcpA_C_like C-terminal 85.7 6 0.00013 24.0 6.6 49 67-120 2-53 (157)
125 cd07245 Glo_EDI_BRP_like_9 Thi 84.0 5.1 0.00011 21.8 6.2 51 68-121 2-53 (114)
126 PLN03042 Lactoylglutathione ly 83.2 9.2 0.0002 24.2 7.1 32 64-95 25-57 (185)
127 cd08364 FosX FosX, a fosfomyci 82.9 7.2 0.00016 22.7 6.6 29 66-94 4-33 (131)
128 KOG4657 Uncharacterized conser 82.8 2.4 5.2E-05 27.6 3.5 23 4-26 145-167 (246)
129 cd07235 MRD Mitomycin C resist 79.4 9.1 0.0002 21.6 6.1 24 69-92 3-26 (122)
130 PF07494 Reg_prop: Two compone 78.2 3.3 7E-05 16.7 2.1 14 103-116 7-20 (24)
131 COG4747 ACT domain-containing 78.0 3 6.5E-05 24.4 2.5 29 66-94 108-136 (142)
132 PF00903 Glyoxalase: Glyoxalas 77.2 11 0.00023 21.2 5.7 52 67-119 2-56 (128)
133 cd04883 ACT_AcuB C-terminal AC 77.1 8 0.00017 19.7 4.0 25 69-93 46-70 (72)
134 cd07263 Glo_EDI_BRP_like_16 Th 76.9 10 0.00022 20.9 6.9 49 69-118 1-52 (119)
135 PLN02367 lactoylglutathione ly 76.1 20 0.00043 23.7 7.0 56 66-122 75-150 (233)
136 cd04906 ACT_ThrD-I_1 First of 75.3 8.2 0.00018 20.8 3.8 28 66-93 40-71 (85)
137 PRK03467 hypothetical protein; 71.9 18 0.00039 22.0 4.9 48 75-122 5-53 (144)
138 cd08358 Glo_EDI_BRP_like_21 Th 71.6 18 0.00039 21.3 7.9 29 66-94 2-31 (127)
139 PHA00450 host dGTPase inhibito 70.7 13 0.00028 20.1 3.7 44 76-119 11-57 (85)
140 cd08344 MhqB_like_N N-terminal 70.6 16 0.00035 20.3 6.3 28 66-93 2-29 (112)
141 cd07255 Glo_EDI_BRP_like_12 Th 70.2 17 0.00037 20.4 6.3 28 67-94 3-31 (125)
142 cd04895 ACT_ACR_1 ACT domain-c 69.9 12 0.00026 19.8 3.5 39 77-115 15-55 (72)
143 cd04908 ACT_Bt0572_1 N-termina 68.7 14 0.0003 18.7 3.7 25 68-92 41-65 (66)
144 cd08348 BphC2-C3-RGP6_C_like T 66.0 23 0.0005 20.3 7.0 50 67-120 2-54 (134)
145 COG3603 Uncharacterized conser 63.8 11 0.00024 22.1 2.7 24 69-92 104-127 (128)
146 cd07237 BphC1-RGP6_C_like C-te 62.2 32 0.00069 20.7 6.3 29 65-93 8-37 (154)
147 PF05526 R_equi_Vir: Rhodococc 60.3 32 0.00069 21.6 4.4 50 64-120 111-160 (177)
148 cd07256 HPCD_C_class_II C-term 60.2 36 0.00078 20.6 6.8 27 66-92 3-30 (161)
149 PF10922 DUF2745: Protein of u 59.3 28 0.0006 19.0 3.6 41 75-115 10-53 (85)
150 COG3349 Uncharacterized conser 58.7 21 0.00045 26.3 4.0 37 81-117 16-52 (485)
151 PF09142 TruB_C: tRNA Pseudour 58.2 19 0.00042 17.9 2.8 41 76-121 5-45 (56)
152 PF02208 Sorb: Sorbin homologo 55.6 6.1 0.00013 18.8 0.6 17 1-17 17-33 (47)
153 smart00300 ChSh Chromo Shadow 54.9 7.6 0.00016 19.7 1.0 18 3-20 43-60 (61)
154 cd00034 ChSh Chromo Shadow Dom 54.5 8.2 0.00018 19.1 1.1 18 2-19 36-53 (54)
155 PF13176 TPR_7: Tetratricopept 53.6 13 0.00029 16.2 1.7 17 3-19 12-28 (36)
156 TIGR00318 cyaB adenylyl cyclas 51.1 58 0.0013 20.2 5.3 24 69-92 5-28 (174)
157 PF00379 Chitin_bind_4: Insect 50.5 28 0.00061 16.8 2.7 15 104-118 30-44 (52)
158 cd04897 ACT_ACR_3 ACT domain-c 50.3 39 0.00085 18.0 3.6 39 77-116 15-56 (75)
159 cd04885 ACT_ThrD-I Tandem C-te 49.7 35 0.00076 17.3 3.1 27 66-92 38-67 (68)
160 COG1791 Uncharacterized conser 49.6 56 0.0012 20.6 4.3 47 75-121 78-124 (181)
161 PRK13490 chemoreceptor glutami 49.3 41 0.0009 20.9 3.8 41 75-116 112-152 (162)
162 PF03975 CheD: CheD chemotacti 47.8 34 0.00073 19.7 3.1 41 75-116 64-104 (114)
163 COG3076 Uncharacterized protei 47.5 4.3 9.4E-05 23.4 -0.6 48 65-112 67-117 (135)
164 PRK03298 hypothetical protein; 47.1 46 0.001 21.9 3.8 36 84-119 118-153 (224)
165 COG4009 Uncharacterized protei 47.1 45 0.00097 18.1 3.2 27 66-92 49-77 (88)
166 PF14044 NETI: NETI protein 46.7 36 0.00077 17.2 2.6 22 75-96 8-29 (57)
167 PRK13495 chemoreceptor glutami 46.4 50 0.0011 20.5 3.8 41 75-116 105-145 (159)
168 PRK13498 chemoreceptor glutami 45.6 54 0.0012 20.5 3.9 40 75-115 115-154 (167)
169 PF02021 UPF0102: Uncharacteri 45.2 54 0.0012 18.1 3.5 40 78-119 4-43 (93)
170 TIGR00068 glyox_I lactoylgluta 44.3 67 0.0015 19.0 6.6 30 64-93 15-45 (150)
171 cd04909 ACT_PDH-BS C-terminal 44.0 33 0.00072 17.2 2.5 17 75-91 53-69 (69)
172 PRK13497 chemoreceptor glutami 43.7 59 0.0013 20.7 3.9 40 75-115 112-151 (184)
173 PF11080 DUF2622: Protein of u 43.1 46 0.00099 18.8 3.0 16 75-90 21-36 (96)
174 KOG0178 20S proteasome, regula 43.1 27 0.00059 22.8 2.3 15 98-113 141-155 (249)
175 PF12142 PPO1_DWL: Polyphenol 42.8 40 0.00086 16.8 2.4 20 100-119 7-26 (54)
176 PRK09437 bcp thioredoxin-depen 42.4 74 0.0016 18.9 6.3 56 66-121 64-139 (154)
177 PF07063 DUF1338: Domain of un 42.2 56 0.0012 22.6 3.9 28 65-92 183-216 (302)
178 cd03017 PRX_BCP Peroxiredoxin 41.3 71 0.0015 18.4 6.0 57 66-122 57-130 (140)
179 COG0792 Predicted endonuclease 40.5 76 0.0016 18.5 5.0 41 78-120 10-50 (114)
180 PRK13491 chemoreceptor glutami 40.3 81 0.0017 20.4 4.1 41 75-116 115-155 (199)
181 PRK14707 hypothetical protein; 40.1 49 0.0011 29.4 3.8 47 76-122 2357-2408(2710)
182 PRK13488 chemoreceptor glutami 40.1 74 0.0016 19.6 3.9 40 75-115 107-146 (157)
183 PRK13493 chemoreceptor glutami 39.6 71 0.0015 20.9 3.9 40 75-115 139-178 (213)
184 PRK13494 chemoreceptor glutami 39.2 76 0.0016 19.8 3.8 40 75-115 114-153 (163)
185 cd04886 ACT_ThrD-II-like C-ter 38.9 52 0.0011 16.2 4.1 25 68-92 45-72 (73)
186 PF01393 Chromo_shadow: Chromo 38.5 22 0.00048 17.9 1.2 17 4-20 41-57 (58)
187 COG2081 Predicted flavoprotein 38.2 81 0.0017 22.9 4.2 38 77-114 114-153 (408)
188 PRK14681 hypothetical protein; 38.1 99 0.0022 19.2 5.0 40 79-119 52-91 (158)
189 PF13756 Stimulus_sens_1: Stim 37.8 31 0.00068 19.8 1.9 14 103-116 19-32 (112)
190 PHA02097 hypothetical protein 37.6 42 0.00091 16.5 2.0 14 106-119 45-58 (59)
191 PF10023 DUF2265: Predicted am 37.3 75 0.0016 22.4 3.9 99 5-110 54-152 (337)
192 PRK05443 polyphosphate kinase; 37.3 1.2E+02 0.0026 23.8 5.2 45 80-124 414-458 (691)
193 PF07411 DUF1508: Domain of un 37.0 50 0.0011 15.9 2.3 19 101-119 4-22 (49)
194 PRK12497 hypothetical protein; 36.7 88 0.0019 18.2 5.3 41 78-120 14-54 (119)
195 PRK04247 hypothetical protein; 36.2 90 0.002 20.8 4.0 34 84-117 143-176 (238)
196 COG0077 PheA Prephenate dehydr 36.1 1.4E+02 0.0031 20.4 5.3 49 66-115 193-248 (279)
197 COG1225 Bcp Peroxiredoxin [Pos 35.9 84 0.0018 19.5 3.6 56 65-120 63-138 (157)
198 PRK13487 chemoreceptor glutami 35.7 90 0.002 20.2 3.9 40 75-115 127-166 (201)
199 PF11823 DUF3343: Protein of u 35.6 69 0.0015 16.6 3.0 26 67-92 42-67 (73)
200 PRK14751 tetracycline resistan 35.3 12 0.00025 15.5 -0.1 8 11-19 21-28 (28)
201 COG5397 Uncharacterized conser 35.2 1.3E+02 0.0027 20.8 4.5 54 68-122 159-213 (349)
202 PF14883 GHL13: Hypothetical g 35.2 74 0.0016 21.9 3.5 18 75-92 17-34 (294)
203 TIGR02540 gpx7 putative glutat 35.0 62 0.0014 19.3 3.0 18 104-121 122-139 (153)
204 COG2344 AT-rich DNA-binding pr 34.4 65 0.0014 20.8 3.0 41 71-118 153-193 (211)
205 smart00671 SEL1 Sel1-like repe 34.1 44 0.00095 13.9 1.9 13 4-16 19-31 (36)
206 COG2921 Uncharacterized conser 33.6 90 0.0019 17.3 3.3 25 64-88 55-84 (90)
207 KOG2465 Uncharacterized conser 33.3 36 0.00078 23.6 1.9 25 66-90 168-192 (390)
208 PF01050 MannoseP_isomer: Mann 33.1 1.2E+02 0.0026 18.6 5.1 47 75-122 24-72 (151)
209 COG1637 Predicted nuclease of 32.9 1E+02 0.0022 20.8 3.8 35 83-117 143-177 (253)
210 PF02222 ATP-grasp: ATP-grasp 32.8 78 0.0017 19.8 3.2 19 74-92 14-32 (172)
211 PF09940 DUF2172: Domain of un 32.2 24 0.00053 25.1 1.0 19 98-116 19-37 (386)
212 PF10706 Aminoglyc_resit: Amin 32.1 1.1E+02 0.0023 19.3 3.6 28 66-93 43-70 (174)
213 KOG2792 Putative cytochrome C 31.8 30 0.00065 23.4 1.3 19 103-121 243-261 (280)
214 PRK13489 chemoreceptor glutami 31.7 1.1E+02 0.0025 20.3 3.9 40 75-115 125-164 (233)
215 PHA02978 hypothetical protein; 31.6 62 0.0013 18.6 2.3 19 103-121 75-93 (135)
216 PRK14676 hypothetical protein; 31.5 1.1E+02 0.0024 17.8 5.3 42 78-121 15-56 (117)
217 KOG0081 GTPase Rab27, small G 31.2 50 0.0011 20.7 2.1 17 8-24 83-99 (219)
218 PF00585 Thr_dehydrat_C: C-ter 31.0 36 0.00078 18.7 1.4 30 65-94 49-81 (91)
219 PRK14581 hmsF outer membrane N 30.7 88 0.0019 24.3 3.7 29 75-113 334-362 (672)
220 PF00515 TPR_1: Tetratricopept 30.7 51 0.0011 13.6 1.7 16 4-19 15-30 (34)
221 PF11520 Cren7: Chromatin prot 30.5 75 0.0016 16.1 2.3 16 101-116 36-52 (60)
222 PRK00907 hypothetical protein; 30.2 84 0.0018 17.5 2.7 26 64-89 57-87 (92)
223 COG0386 BtuE Glutathione perox 30.0 76 0.0016 19.7 2.7 25 75-99 44-68 (162)
224 PF04761 Phage_Treg: Lactococc 29.4 46 0.001 16.2 1.4 12 7-18 16-27 (57)
225 PRK06704 RNA polymerase factor 29.4 58 0.0013 21.4 2.4 44 71-118 183-226 (228)
226 PF04659 Arch_fla_DE: Archaeal 29.1 57 0.0012 18.5 1.9 17 3-20 34-50 (99)
227 PF10813 DUF2733: Protein of u 28.6 40 0.00087 14.8 1.0 17 106-122 14-30 (32)
228 PRK14686 hypothetical protein; 28.6 1.3E+02 0.0028 17.6 5.1 42 78-121 13-54 (119)
229 PRK14679 hypothetical protein; 28.6 1.4E+02 0.0029 17.8 5.4 42 78-121 23-64 (128)
230 PF10061 DUF2299: Uncharacteri 28.0 1.4E+02 0.0031 18.0 4.9 42 80-123 2-44 (138)
231 PRK11191 RNase E inhibitor pro 27.7 83 0.0018 19.0 2.6 11 103-113 111-121 (138)
232 COG0253 DapF Diaminopimelate e 27.7 1.5E+02 0.0034 20.2 4.1 53 66-121 154-208 (272)
233 PF13200 DUF4015: Putative gly 27.6 1E+02 0.0023 21.5 3.4 19 74-92 60-78 (316)
234 PRK13599 putative peroxiredoxi 27.3 1.8E+02 0.0039 18.9 6.9 18 102-119 119-136 (215)
235 PHA02087 hypothetical protein 27.3 76 0.0016 16.6 2.0 21 104-124 46-66 (83)
236 PF08238 Sel1: Sel1 repeat; I 27.2 47 0.001 14.2 1.2 13 4-16 22-34 (39)
237 KOG0369 Pyruvate carboxylase [ 27.1 3E+02 0.0064 22.0 5.7 54 68-121 200-260 (1176)
238 KOG1494 NAD-dependent malate d 27.1 89 0.0019 21.7 2.9 71 2-93 174-244 (345)
239 PF13280 WYL: WYL domain 27.1 1.2E+02 0.0026 18.0 3.4 30 64-93 125-156 (172)
240 PRK14677 hypothetical protein; 26.8 1.3E+02 0.0029 17.2 4.6 42 78-121 8-49 (107)
241 PRK14675 hypothetical protein; 26.8 1.4E+02 0.0031 17.6 4.7 41 79-121 17-57 (125)
242 COG4007 Predicted dehydrogenas 26.8 1.4E+02 0.003 20.6 3.7 37 78-115 59-97 (340)
243 PRK10382 alkyl hydroperoxide r 26.0 1.8E+02 0.0039 18.4 7.1 56 66-121 65-138 (187)
244 PRK14673 hypothetical protein; 25.9 1.1E+02 0.0024 18.5 2.9 40 79-119 35-74 (137)
245 PRK14685 hypothetical protein; 25.8 1.8E+02 0.004 18.5 4.6 42 78-121 50-91 (177)
246 PF09741 DUF2045: Uncharacteri 25.5 37 0.0008 22.6 0.9 19 66-84 132-150 (237)
247 cd07963 Anticodon_Ia_Cys Antic 25.5 88 0.0019 18.9 2.5 21 76-96 130-150 (156)
248 KOG1651 Glutathione peroxidase 24.9 1.9E+02 0.0041 18.3 4.4 48 71-121 106-155 (171)
249 PF09709 Cas_Csd1: CRISPR-asso 24.9 1.4E+02 0.0031 22.6 3.9 39 78-116 2-40 (574)
250 PF05593 RHS_repeat: RHS Repea 24.9 80 0.0017 14.0 3.4 22 100-121 14-35 (38)
251 PF11141 DUF2914: Protein of u 24.7 1.1E+02 0.0025 15.7 3.4 19 101-119 44-62 (66)
252 PF12000 Glyco_trans_4_3: Gkyc 24.7 33 0.00071 21.5 0.5 35 76-111 52-86 (171)
253 PF02786 CPSase_L_D2: Carbamoy 24.2 41 0.0009 21.7 1.0 28 74-101 24-51 (211)
254 COG1871 CheD Chemotaxis protei 24.1 1.9E+02 0.0042 18.1 4.6 40 75-115 114-153 (164)
255 PF11001 DUF2841: Protein of u 24.0 72 0.0016 19.0 1.9 19 1-19 1-19 (126)
256 KOG1693 emp24/gp25L/p24 family 23.9 72 0.0016 20.7 1.9 16 103-118 61-76 (209)
257 PHA00159 endonuclease I 23.8 1.7E+02 0.0036 17.9 3.3 48 71-118 14-67 (148)
258 PHA00212 putative transcriptio 23.8 67 0.0014 15.9 1.4 11 7-17 18-28 (63)
259 PF13964 Kelch_6: Kelch motif 23.7 93 0.002 14.4 2.0 20 103-122 28-47 (50)
260 PF14907 NTP_transf_5: Unchara 23.7 2.1E+02 0.0046 18.5 8.2 52 66-122 95-146 (249)
261 PF01383 CpcD: CpcD/allophycoc 23.7 1.1E+02 0.0024 15.2 2.3 22 72-93 31-52 (56)
262 PF11645 PDDEXK_5: PD-(D/E)XK 23.6 1.7E+02 0.0038 17.9 3.4 40 78-121 11-51 (149)
263 PRK14688 hypothetical protein; 23.6 1.7E+02 0.0036 17.2 5.2 42 78-121 14-55 (121)
264 PF02630 SCO1-SenC: SCO1/SenC; 23.5 89 0.0019 19.4 2.3 17 103-119 156-172 (174)
265 PF11782 DUF3319: Protein of u 23.4 63 0.0014 17.9 1.4 13 5-18 36-48 (88)
266 COG1389 DNA topoisomerase VI, 23.4 79 0.0017 23.5 2.2 16 103-118 206-221 (538)
267 PF15499 Peptidase_C98: Ubiqui 23.3 87 0.0019 21.3 2.3 15 103-117 234-248 (275)
268 PF03568 Peptidase_C50: Peptid 23.1 1.6E+02 0.0034 21.1 3.7 43 71-114 230-272 (383)
269 TIGR00252 conserved hypothetic 22.9 1.7E+02 0.0037 17.1 5.2 42 78-121 14-55 (119)
270 TIGR01643 YD_repeat_2x YD repe 22.9 90 0.0019 13.8 3.6 21 101-121 15-35 (42)
271 PF10001 DUF2242: Uncharacteri 22.8 81 0.0018 18.6 1.8 17 78-94 2-18 (121)
272 PHA02503 putative transcriptio 22.6 74 0.0016 15.4 1.4 11 7-17 16-26 (57)
273 PF13181 TPR_8: Tetratricopept 22.5 77 0.0017 12.9 1.8 16 4-19 15-30 (34)
274 PF01835 A2M_N: MG2 domain; I 22.4 62 0.0013 17.7 1.3 18 103-120 38-55 (99)
275 PRK14680 hypothetical protein; 22.4 1.9E+02 0.0041 17.4 5.4 42 78-121 14-55 (134)
276 PF01939 DUF91: Protein of unk 22.4 62 0.0013 21.4 1.5 31 87-117 122-152 (228)
277 PF13812 PPR_3: Pentatricopept 22.3 55 0.0012 13.3 0.9 15 76-90 19-33 (34)
278 PRK10314 putative acyltransfer 22.3 97 0.0021 18.7 2.3 16 7-23 118-133 (153)
279 COG1834 N-Dimethylarginine dim 22.3 1E+02 0.0022 21.0 2.5 38 73-111 36-73 (267)
280 TIGR01142 purT phosphoribosylg 22.3 1.2E+02 0.0026 21.2 3.1 38 73-110 121-158 (380)
281 COG3042 Hlx Putative hemolysin 21.8 1.6E+02 0.0034 16.3 3.3 39 78-118 37-75 (85)
282 TIGR03705 poly_P_kin polyphosp 21.7 3E+02 0.0064 21.6 5.0 46 79-124 404-449 (672)
283 cd06218 DHOD_e_trans FAD/NAD b 21.6 2.5E+02 0.0053 18.4 4.7 48 75-122 190-243 (246)
284 PTZ00056 glutathione peroxidas 21.5 2.3E+02 0.005 18.0 6.9 16 104-119 147-162 (199)
285 TIGR01046 S10_Arc_S20_Euk ribo 21.5 1.7E+02 0.0037 16.5 4.6 35 79-113 21-55 (99)
286 PF13653 GDPD_2: Glycerophosph 21.4 76 0.0017 13.6 1.2 23 70-92 2-24 (30)
287 PF12566 DUF3748: Protein of u 21.4 1.3E+02 0.0027 17.8 2.4 19 101-119 68-86 (122)
288 PRK00341 hypothetical protein; 21.3 1.4E+02 0.0031 16.5 2.6 25 64-88 56-85 (91)
289 TIGR03352 VI_chp_3 type VI sec 21.2 1.6E+02 0.0036 17.8 3.1 22 103-124 111-132 (146)
290 PRK14689 hypothetical protein; 21.2 2E+02 0.0042 17.1 4.1 42 78-121 16-57 (124)
291 PF07719 TPR_2: Tetratricopept 21.1 82 0.0018 12.7 1.7 15 4-18 15-29 (34)
292 PF12221 HflK_N: Bacterial mem 21.1 1.1E+02 0.0024 14.3 1.9 13 74-86 20-32 (42)
293 cd01902 Ntn_CGH Choloylglycine 21.1 2.8E+02 0.0062 18.9 5.6 43 75-117 111-154 (291)
294 PRK11899 prephenate dehydratas 20.9 2.9E+02 0.0062 18.9 5.0 47 67-114 194-247 (279)
295 KOG4094 Uncharacterized conser 20.9 80 0.0017 19.4 1.6 17 4-20 124-140 (178)
296 COG0036 Rpe Pentose-5-phosphat 20.9 2E+02 0.0044 19.0 3.5 22 68-89 64-85 (220)
297 PF03979 Sigma70_r1_1: Sigma-7 20.8 33 0.00071 18.4 -0.0 23 72-94 36-58 (82)
298 PF07103 DUF1365: Protein of u 20.7 82 0.0018 21.1 1.8 21 91-111 121-141 (254)
299 KOG3323 D-Tyr-tRNA (Tyr) deacy 20.6 2.2E+02 0.0047 17.4 3.4 50 68-120 29-80 (149)
300 PRK11569 transcriptional repre 20.6 2.8E+02 0.006 18.6 4.8 43 76-118 196-238 (274)
301 PF08379 Bact_transglu_N: Bact 20.5 1.5E+02 0.0033 15.6 3.7 20 103-122 48-67 (82)
302 PF12897 Aminotran_MocR: Alani 20.5 3.1E+02 0.0068 20.1 4.6 49 66-120 345-395 (425)
303 TIGR03884 sel_bind_Methan sele 20.5 1.4E+02 0.0029 16.0 2.2 19 73-91 23-45 (74)
304 PF10033 ATG13: Autophagy-rela 20.4 2.7E+02 0.0058 18.4 4.3 54 66-120 35-101 (233)
305 PF02974 Inh: Protease inhibit 20.3 1.8E+02 0.0038 16.3 3.3 22 103-124 62-83 (99)
306 KOG1785 Tyrosine kinase negati 20.3 2.7E+02 0.0059 20.4 4.3 50 69-118 259-309 (563)
307 COG0456 RimI Acetyltransferase 20.3 1.2E+02 0.0026 18.2 2.4 18 5-23 136-153 (177)
308 COG0051 RpsJ Ribosomal protein 20.2 1.9E+02 0.0042 16.6 4.5 40 74-113 15-58 (104)
309 PF10649 DUF2478: Protein of u 20.1 2.4E+02 0.0051 17.6 5.0 48 77-124 16-68 (159)
310 PF05301 Mec-17: Touch recepto 20.0 1.6E+02 0.0034 17.4 2.7 18 101-118 27-44 (120)
No 1
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.93 E-value=4.2e-24 Score=125.54 Aligned_cols=119 Identities=46% Similarity=0.751 Sum_probs=88.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCC-CCCCCCCCCCCeEEEEEECCHHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGS-VQTPSSPQRQPIEVCFAYADVDA 79 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~d~~~ 79 (125)
|+|+|++++.+||+++|||+.....+...+..+..++..+.+.............. ...+. ...+..+++|.|+|+++
T Consensus 6 l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~di~~ 84 (125)
T cd07264 6 IYVEDVEKTLEFYERAFGFERRFLHESGDYGELETGETTLAFASHDLAESNLKGGFVKADPA-QPPAGFEIAFVTDDVAA 84 (125)
T ss_pred EEEcCHHHHHHHHHHhhCCeEEeecCCCcEEEecCCcEEEEEEcccccccccccCccCCccc-cCCCcEEEEEEcCCHHH
Confidence 57999999999999999999865434345666666666666654332111011010 01111 12345789999999999
Q ss_pred HHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 80 AYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
++++++++|++++.++...+||.+.++++|||||.|+++++
T Consensus 85 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 85 AFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred HHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 99999999999998888888998999999999999999874
No 2
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.91 E-value=1.2e-22 Score=119.11 Aligned_cols=114 Identities=25% Similarity=0.360 Sum_probs=87.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec--CCc--eeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD--HSH--RWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d 76 (125)
|.|+|++++++||+++|||++.... +.. .++.+..++..+++........ ... ......+..+++|.|+|
T Consensus 5 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~---~~~---~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 5 LRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYR---ASS---ARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCccc---ccc---cccCCCceEEEEEEECC
Confidence 5789999999999999999997542 212 2556777777777654332111 000 01113466899999999
Q ss_pred HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 77 VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+++++++++++|++++.++...+||.+.++|+|||||+|+|.++
T Consensus 79 ~d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 79 VDAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEecC
Confidence 99999999999999998888888998999999999999999763
No 3
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.90 E-value=1.5e-22 Score=120.89 Aligned_cols=118 Identities=18% Similarity=0.237 Sum_probs=87.5
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCC--ceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHS--HRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 78 (125)
|.|.|++++++||+++|||++...... .....+..++..+.+....... ..... .....+.+..|++|.|+|++
T Consensus 6 i~V~D~e~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~g~~~l~l~~~~~~~--~~~~~--~~~~~~~g~~hia~~V~Dvd 81 (136)
T cd08342 6 FYVGNAKQLASWFSTKLGFEPVAYHGSEDKASYLLRQGDINFVLNSPLNSF--APVAD--FLEKHGDGVCDVAFRVDDAA 81 (136)
T ss_pred EEeCCHHHHHHHHHHhcCCeEEEecCCCceEEEEEEcCCEEEEEecCCCCC--CchHH--HHHhcCCceEEEEEEeCCHH
Confidence 579999999999999999998654322 2344555566677765322111 00000 00111346789999999999
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
+++++++++|++++.+|...+||.+.++++||+|++|+|++...
T Consensus 82 a~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 82 AAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred HHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCC
Confidence 99999999999999999887788899999999999999999653
No 4
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.90 E-value=3.8e-22 Score=116.68 Aligned_cols=105 Identities=24% Similarity=0.424 Sum_probs=81.8
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHHHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAA 80 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 80 (125)
|.|+|++++++||++ |||+.....+. .++.+..++..+++...... .+ .....+++|.|+|++++
T Consensus 8 l~v~Dl~~s~~FY~~-lG~~~~~~~~~-~~~~~~~~~~~l~l~~~~~~----------~~---~~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 8 LPSRDLDATEAFYAR-LGFSVGYRQAA-GYMILRRGDLELHFFAHPDL----------DP---ATSPFGCCLRLPDVAAL 72 (120)
T ss_pred eEcCCHHHHHHHHHH-cCCEEEecCCC-CEEEEEcCCEEEEEEecCcC----------CC---CCCcceEEEEeCCHHHH
Confidence 579999999999999 99998765443 56777777777777642210 01 22346899999999999
Q ss_pred HHHHHHCCCee-------ccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 81 YKRAVENGAVP-------VSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 81 ~~~~~~~g~~~-------~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+++++++|+++ +.++...+||.+.++|+|||||.|+|.++
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 73 HAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 99999999974 33455567898999999999999999885
No 5
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.90 E-value=9.4e-22 Score=114.93 Aligned_cols=111 Identities=31% Similarity=0.462 Sum_probs=86.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec--C--CceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD--H--SHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d 76 (125)
|+|+|++++.+||+++|||++.... + ...+..+..++..+++...... .+ .+.....+..+++|.|+|
T Consensus 7 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-----~~---~~~~~~~~~~~~~~~v~d 78 (122)
T cd07246 7 LIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPE-----HG---SPASWGGTPVSLHLYVED 78 (122)
T ss_pred EEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcc-----cC---CCCCCCCceEEEEEEeCC
Confidence 5789999999999999999986442 1 2235667777777776532111 00 111113467899999999
Q ss_pred HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 77 VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
++++++++.+.|++++.++...+||.+.++++||+||.|+|++
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 79 VDATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 9999999999999999888878899899999999999999986
No 6
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.90 E-value=6.7e-22 Score=115.32 Aligned_cols=111 Identities=29% Similarity=0.411 Sum_probs=82.2
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCe--EEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQT--TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 78 (125)
|.|+|++++.+||+++|||++.... ..+..+..++. .+.+....... .. ..+....+...+++|.|+|++
T Consensus 7 l~v~D~~~s~~FY~~~lG~~~~~~~--~~~~~~~~~~~~~~l~l~~~~~~~---~~---~~~~~~~~~~~~~~~~v~did 78 (119)
T cd08359 7 IVTDDLAETADFYVRHFGFTVVFDS--DWYVSLRSPDGGVELAFMLPGHET---VP---AAQYQFQGQGLILNFEVDDVD 78 (119)
T ss_pred EEECCHHHHHHHHHHhhCcEEEecc--CcEEEEecCCCceEEEEccCCCCC---Cc---chhcccCCceEEEEEEECCHH
Confidence 5799999999999999999987653 34555655443 44443221110 00 001111334568999999999
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
++++++.++|+++..++...+||.+.++++||+||.|||++
T Consensus 79 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 79 AEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 99999999999988888888899899999999999999985
No 7
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.89 E-value=1.6e-21 Score=112.38 Aligned_cols=108 Identities=29% Similarity=0.448 Sum_probs=85.7
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHHHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAA 80 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 80 (125)
|.|+|++++++||+++|||++....+...++.+..++..+.+....... .+ ...+..+++|.++|++++
T Consensus 4 i~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~ 72 (112)
T cd08349 4 LPVSDIERSLAFYRDVLGFEVDWEHPEPGYAFLSRGGAQLMLSEHDGDE---------PV--PLGRGGSVYIEVEDVDAL 72 (112)
T ss_pred EEECCHHHHHHHHHhccCeEEEEEcCCCcEEEEEeCCEEEEEeccCCCC---------CC--CCCCcEEEEEEeCCHHHH
Confidence 5799999999999999999987654435667777777777765432211 00 134667899999999999
Q ss_pred HHHHHHCCCe-eccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 81 YKRAVENGAV-PVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 81 ~~~~~~~g~~-~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
++++.++|+. +..++...+||.+.++++||+||.|+|++
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 73 YAELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 9999999998 66777777788899999999999999975
No 8
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.89 E-value=1.1e-21 Score=114.65 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=78.5
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHHHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAA 80 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 80 (125)
|.|+|++++++||+++|||++....+ ....+. ++..+........ .... .+...+....+++|.|+|++++
T Consensus 8 l~v~D~~~a~~FY~~~lG~~~~~~~~--~~~~~~-~~~~l~~~~~~~~----~~~~--~~~~~~~~~~~l~~~v~dvd~~ 78 (120)
T cd09011 8 LVVKDIEKSKKFYEKVLGLKVVMDFG--ENVTFE-GGFALQEGYSWLE----GISK--ADIIEKSNNFELYFEEEDFDAF 78 (120)
T ss_pred EEECCHHHHHHHHHHhcCCEEeeccC--ceEEEe-ccceeccchhhhc----cCCc--ccccccCCceEEEEEehhhHHH
Confidence 57999999999999999999865332 222222 2323322111100 0000 0011134567999999999999
Q ss_pred HHHHHHCCC-eeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 81 YKRAVENGA-VPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 81 ~~~~~~~g~-~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+++++++|+ +++.++...+||.+.++|+|||||+|||.++
T Consensus 79 ~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 79 LDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred HHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 999999986 6888888888999999999999999999875
No 9
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.88 E-value=4.1e-21 Score=111.33 Aligned_cols=102 Identities=16% Similarity=0.269 Sum_probs=78.8
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHHHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAA 80 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 80 (125)
|.|+|++++++||++ |||++.... ..++.+..++..+++....... .....+++|.|+|++++
T Consensus 7 l~v~Dl~~s~~FY~~-LGf~~~~~~--~~~~~l~~~~~~l~l~~~~~~~--------------~~~~~~~~~~v~did~~ 69 (113)
T cd08356 7 IPAKDFAESKQFYQA-LGFELEWEN--DNLAYFRLGNCAFYLQDYYVKD--------------WAENSMLHLEVDDLEAY 69 (113)
T ss_pred cccccHHHHHHHHHH-hCCeeEecC--CCEEEEEcCCEEEEeecCCCcc--------------cccCCEEEEEECCHHHH
Confidence 579999999999987 999997654 3567777787777665321100 11345789999999999
Q ss_pred HHHHHHCCCeec-----cCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 81 YKRAVENGAVPV-----SEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 81 ~~~~~~~g~~~~-----~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
+++++++|+++. .++...+||.+.++|+|||||+|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 999999998642 345556788899999999999999864
No 10
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.88 E-value=1.5e-21 Score=111.98 Aligned_cols=104 Identities=32% Similarity=0.559 Sum_probs=78.6
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCe----EEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQT----TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d 76 (125)
|.|+|++++++||+++|||++....+ ..+.+..+.. ...+..... +.....+..+++|.|+|
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~v~d 66 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP--DYVDFSLGFRFHDGVIEFLQFPD------------PPGPPGGGFHLCFEVED 66 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET--SEEEEEETEEEEEEEEEEEEEES------------SSSSSSSEEEEEEEESH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC--CeEEEEeccchhhhhHHHccCCc------------cccCCCceeEEEEEEcC
Confidence 68999999999999999999987433 4455544321 112221110 11114577899999999
Q ss_pred HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEe
Q 045980 77 VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~ 118 (125)
++++++++.++|++++.++...+||.+.+++.||+||.|+|+
T Consensus 67 v~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 67 VDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 999999999999999988998889999999999999999986
No 11
>PLN02367 lactoylglutathione lyase
Probab=99.87 E-value=1e-20 Score=120.31 Aligned_cols=121 Identities=19% Similarity=0.214 Sum_probs=81.3
Q ss_pred CeecCHHHHHHHHHHhcCCeEEee--cC--CceeeEEee------------------C-CeEEEEeeccccccccccCCC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTL--DH--SHRWGELES------------------G-QTTIAFTRLHQHETDELTGSV 57 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~--~~--~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~ 57 (125)
|.|+|++++++||+++|||++... .+ ....+++.. + +..|.+...............
T Consensus 81 lRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~~~~~~y 160 (233)
T PLN02367 81 YRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESDPDFKGY 160 (233)
T ss_pred EEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCccccchhc
Confidence 579999999999999999997542 12 122334421 1 235555432221110001111
Q ss_pred CCCCCCCCCCeEEEEEECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 58 QTPSSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 58 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
........+..||+|.|+|+++++++++++|++++.+|....+ .+.++|+|||||+|||++...
T Consensus 161 ~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~-~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 161 HNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM-KGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred ccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc-eEEEEEECCCCCEEEEEeccc
Confidence 1111112478899999999999999999999999877776554 378899999999999998754
No 12
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.87 E-value=9.8e-21 Score=109.60 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=81.1
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecC-CceeeEEeeCC-eEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDH-SHRWGELESGQ-TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 78 (125)
|.|+|++++++||+++||+++..... ...++.+..++ ..+.+...... .+ ..+...+++|.|+|++
T Consensus 6 l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~f~v~di~ 73 (114)
T cd07247 6 LPTTDPERAKAFYGAVFGWTFEDMGDGGGDYAVFSTGGGAVGGLMKAPEP----------AA--GSPPGWLVYFAVDDVD 73 (114)
T ss_pred eeCCCHHHHHHHHHhccCceeeeccCCCCceEEEEeCCccEEEEecCCCC----------CC--CCCCeEEEEEEeCCHH
Confidence 57999999999999999999865432 23555666654 33333321110 00 1346678999999999
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
+++++++++|++++.++...+++.+.++++||+||.|+|++
T Consensus 74 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 74 AAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 99999999999998888877766689999999999999975
No 13
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.87 E-value=1.4e-20 Score=108.69 Aligned_cols=103 Identities=27% Similarity=0.338 Sum_probs=77.8
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeC---CeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESG---QTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADV 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 77 (125)
|.|+|++++.+||+++|||+.....+ ....+..+ +..+.+..... . .....|++|.|+|+
T Consensus 6 l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----------~----~~~~~~i~~~v~d~ 68 (112)
T cd07238 6 LPVADPEAAAAFYADVLGLDVVMDHG--WIATFASPQNMTVQVSLATEGG-----------T----ATVVPDLSIEVDDV 68 (112)
T ss_pred EecCCHHHHHHHHHHhcCceEEEcCC--ceEEEeecCCCCcEEEEecCCC-----------C----CCCCCEEEEEeCCH
Confidence 57999999999999999999865322 22333332 23333322100 0 12345899999999
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+++++++++.|+++..++...+||.+.++|.||+||.|+|+++
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 69 DAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 9999999999999888888778888899999999999999976
No 14
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.87 E-value=1.1e-20 Score=110.65 Aligned_cols=112 Identities=27% Similarity=0.389 Sum_probs=81.3
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeC-CeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE---CC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESG-QTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY---AD 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~d 76 (125)
|.|+|+++|++||++ |||++....+...++.+..+ +..+++........ .... .+ ....+..+++|.+ +|
T Consensus 6 l~V~D~~~a~~FY~~-LGf~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~--~~-~~~~~~~~l~~~~~~~~d 79 (122)
T cd07235 6 IVVADMAKSLDFYRR-LGFDFPEEADDEPHVEAVLPGGVRLAWDTVESIRS--FTPG--WT-PTGGHRIALAFLCETPAE 79 (122)
T ss_pred EEeccHHHHHHHHHH-hCceecCCcCCCCcEEEEeCCCEEEEEEcccceee--ecCC--CC-CCCCCcEEEEEEcCCHHH
Confidence 579999999999974 99998654333356666665 56776654322111 0011 11 1133556788866 58
Q ss_pred HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEe
Q 045980 77 VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~ 118 (125)
+++++++++++|+++..++...+||.+.++|+|||||.|||+
T Consensus 80 vd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 80 VDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred HHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 999999999999998888888889989999999999999997
No 15
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.87 E-value=1.6e-20 Score=112.66 Aligned_cols=116 Identities=21% Similarity=0.344 Sum_probs=80.1
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecC--C-------------ceeeEEee--CCeEEEEeeccccccccccCCCCCCCCC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDH--S-------------HRWGELES--GQTTIAFTRLHQHETDELTGSVQTPSSP 63 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~--~-------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (125)
|.|+|++++++||++ |||++..... . .....+.. ++..+.+........ ..... .....
T Consensus 9 i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~--~~~~~-~~~~~ 84 (142)
T cd08353 9 IVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAV--IADHR-PAPVN 84 (142)
T ss_pred EEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCC--cCcCC-CCCCC
Confidence 579999999999998 9998753211 0 11223332 344566554322111 11100 11112
Q ss_pred CCCCeEEEEEECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 64 QRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 64 ~~~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
..+..|++|.|+|+++++++++++|+++..++....+|.+.+||+||+|+.|||++.
T Consensus 85 ~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 85 ALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 446779999999999999999999999987776666788999999999999999985
No 16
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.86 E-value=2.4e-20 Score=108.00 Aligned_cols=107 Identities=23% Similarity=0.313 Sum_probs=81.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEee-CCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECC---
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELES-GQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD--- 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d--- 76 (125)
|.|+|+++|++||+++||+++....+ .+..+.. ++..+.++...... . +.....+..|++|.+++
T Consensus 4 l~v~d~~~a~~FY~~~lg~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~------~---~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 4 LYVEDPAASAEFYSELLGREPVELSP--TFALFVLGSGVKLGLWSRHTVE------P---ASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEECCHHHHHHHHHHHcCCCccCCCC--ceEEEEeCCCcEEEEeeccccC------C---CCCCCCCceEEEEEcCCHHH
Confidence 57999999999999999999875432 3555554 45666665432211 0 01113456799999975
Q ss_pred HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 77 VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
++++++++.++|+++..++...+|| +.++|+|||||.|||+.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g-~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFG-YTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCc-cEEEEECCCCCEEEeeC
Confidence 8899999999999999888888898 78999999999999974
No 17
>PRK10291 glyoxalase I; Provisional
Probab=99.86 E-value=8.8e-20 Score=107.94 Aligned_cols=114 Identities=16% Similarity=0.212 Sum_probs=77.5
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecC--Cc--eeeEEeeCC----eEEEEeeccccccccccCCCCCCCCCCCCCeEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDH--SH--RWGELESGQ----TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF 72 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~--~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
|.|+|++++++||+++|||++..... .. ..+.+..++ ..+.+.... +....+ .+.+..|++|
T Consensus 2 l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~--~g~~~~hlaf 71 (129)
T PRK10291 2 LRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW--------GVDKYE--LGTAYGHIAL 71 (129)
T ss_pred EEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecC--------CCCCCc--CCCCeeEEEE
Confidence 57999999999999999999854321 11 223333322 122222110 000011 1346779999
Q ss_pred EECCHHHHHHHHHHCCCeeccCCccCCCCc-EEEEEeCCCCCEEEEeeeccCC
Q 045980 73 AYADVDAAYKRAVENGAVPVSEPEDKEWGQ-KVGYVRDINGIVVRMGSYVQAS 124 (125)
Q Consensus 73 ~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~~~Dp~G~~iel~~~~~~~ 124 (125)
.|+|+++++++++++|+++..++...+++. +.++|.|||||.|||++....+
T Consensus 72 ~V~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~ 124 (129)
T PRK10291 72 SVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAG 124 (129)
T ss_pred EeCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccc
Confidence 999999999999999999886655444553 5678999999999999977543
No 18
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.85 E-value=1.3e-19 Score=106.10 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=79.6
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec---CCcee-eEEee-CCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD---HSHRW-GELES-GQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~---~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (125)
|.|.|++++.+||+++|||++.... +...+ ..+.. ++..+.+........ ....+ ...+..|++|.|+
T Consensus 9 l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~-----~~~~~--~~~g~~h~~~~v~ 81 (125)
T cd08352 9 IICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPE-----RPSYP--EACGLRHLAFSVE 81 (125)
T ss_pred EEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCC-----CCCCC--cCCCceEEEEEeC
Confidence 5789999999999999999986431 11222 23333 445555543322110 01111 1346779999999
Q ss_pred CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 76 DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
|++++++++++.|+++..++....+|.+.+|++||+||.|||++
T Consensus 82 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 82 DIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 99999999999999988766666677789999999999999975
No 19
>PRK11478 putative lyase; Provisional
Probab=99.85 E-value=1.1e-19 Score=107.24 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=76.8
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec---CCcee-eEEee-CCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD---HSHRW-GELES-GQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~---~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (125)
|.|+|++++++||+++|||++.... +...+ ..+.. ++..+.+....... +....+ ...+..|++|.|+
T Consensus 12 l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-----~~~~~~--~~~g~~hi~f~v~ 84 (129)
T PRK11478 12 IIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPP-----ERPSRP--EACGLRHLAFSVD 84 (129)
T ss_pred EEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCC-----CCCCCC--CCCceeEEEEEeC
Confidence 5789999999999999999985321 11111 22333 34455554322111 000111 1345679999999
Q ss_pred CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 76 DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
|++++++++++.|+++........+|.+.+||+||+||.|||++
T Consensus 85 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 85 DIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred CHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 99999999999999986544444567789999999999999987
No 20
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.85 E-value=7.3e-20 Score=107.54 Aligned_cols=114 Identities=16% Similarity=0.227 Sum_probs=77.6
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeC-CeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC---C
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESG-QTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA---D 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---d 76 (125)
|.|+|+++|++||++ |||+............+..+ +..+++........ .... ..+.....+..|++|.|+ +
T Consensus 6 l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~-~~~~~~~~~~~~l~f~v~~~~~ 81 (124)
T cd09012 6 LPVKDLEKSTAFYTA-LGFEFNPQFSDEKAACMVISDNIFVMLLTEDFFQT--FTPK-PIADTKKSTEVLISLSADSREE 81 (124)
T ss_pred eecCCHHHHHHHHHH-CCCEEccccCCCCeEEEEECCceEEEEEcHHHHhh--ccCC-CcccCCCCCeEEEEEeCCCHHH
Confidence 579999999999986 99997643222233444443 45666654321110 0000 000011335578999997 6
Q ss_pred HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 77 VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
+++++++++++|++++.+|...+|+ +.+||+|||||.|||+.
T Consensus 82 vd~~~~~l~~~G~~i~~~p~~~~~~-~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 82 VDELVEKALAAGGKEFREPQDHGFM-YGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHCCCcccCCcccCCce-EEEEEECCCCCEEEEEE
Confidence 8899999999999998888777765 78999999999999984
No 21
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.85 E-value=8.5e-20 Score=106.48 Aligned_cols=114 Identities=25% Similarity=0.369 Sum_probs=82.1
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE---CCH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY---ADV 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~d~ 77 (125)
|.|+|++++.+||+++|||++.... ...+..+..++..+.+........ .......+ .+.+..++.+.+ +|+
T Consensus 4 l~v~d~~~a~~FY~~~lg~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~d~ 78 (121)
T cd07251 4 LGVADLARSRAFYEALLGWKPSADS-NDGVAFFQLGGLVLALFPREELAK--DAGVPVPP--PGFSGITLAHNVRSEEEV 78 (121)
T ss_pred EeeCCHHHHHHHHHHhcCceecccC-CCceEEEEcCCeEEEEecchhhhh--hcCCCCCC--CCccceEEEEEcCCHHHH
Confidence 5799999999999999999986542 234556666777777664322111 01111111 133455666654 689
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
+++++++++.|+++..++...+||.+.++++||+||+|||..
T Consensus 79 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 79 DAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 999999999999998888777888899999999999999975
No 22
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.85 E-value=2.3e-19 Score=111.71 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=79.5
Q ss_pred CeecCHHHHHHHHHHhcCCeEEee--cCC--ceeeEEee-------------------CCeEEEEeeccccccccccCCC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTL--DHS--HRWGELES-------------------GQTTIAFTRLHQHETDELTGSV 57 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~--~~~--~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 57 (125)
|+|+|+++|++||+++|||++... .+. ...+.+.. ++..|.+.........+.....
T Consensus 33 i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~~p~~~~~ 112 (185)
T PLN03042 33 FRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTESDPEFKGY 112 (185)
T ss_pred EeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCccccccccc
Confidence 689999999999999999998543 111 12233321 1235555432221100000001
Q ss_pred CCCCCCCCCCeEEEEEECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeeccC
Q 045980 58 QTPSSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQA 123 (125)
Q Consensus 58 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~~ 123 (125)
..+.....+..|++|.|+|+++++++++++|+++...+....+ .+.++|+||+||+|||++...-
T Consensus 113 ~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~-~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 113 HNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM-KGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred ccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc-eeEEEEECCCCCEEEEEECCCc
Confidence 1111113477899999999999999999999998866654332 4678999999999999987543
No 23
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.85 E-value=1.6e-19 Score=104.78 Aligned_cols=110 Identities=23% Similarity=0.389 Sum_probs=79.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecC---CceeeEEeeC---CeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDH---SHRWGELESG---QTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY 74 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 74 (125)
|.|.|++++++||+++|||++..... ...++.+..+ +..+.+....... .. .+. ...+..|++|.|
T Consensus 4 l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~--~~~-~~~~~~~~~~~v 75 (119)
T cd07263 4 LYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPPANPA-----AM--SGL-QPGGTPGLVLAT 75 (119)
T ss_pred EEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCCCCcc-----cc--ccc-cCCCceEEEEEe
Confidence 57899999999999999999875422 2234444432 3345554322111 00 011 134667999999
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
+|+++++++++++|+++..++....++ +.++++||+||.|+|++
T Consensus 76 ~di~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 76 DDIDATYEELKARGVEFSEEPREMPYG-TVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred hHHHHHHHHHHhCCCEEeeccccCCCc-eEEEEECCCCCEEEEeC
Confidence 999999999999999998877555555 89999999999999974
No 24
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.84 E-value=2.9e-19 Score=104.53 Aligned_cols=113 Identities=17% Similarity=0.294 Sum_probs=80.9
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECC-HHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD-VDA 79 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d-~~~ 79 (125)
|.|+|++++++||+++|||++....+......+..++..+.+....... .. .+.....+..|++|.+++ +++
T Consensus 9 l~v~d~~~s~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~--~~~~~~~~~~hi~~~~~~~~~~ 81 (125)
T cd07253 9 LTVADIEATLDFYTRVLGMEVVRFGEEVGRKALRFGSQKINLHPVGGEF-----EP--AAGSPGPGSDDLCLITEPPIDE 81 (125)
T ss_pred EEecCHHHHHHHHHHHhCceeecccccCCceEEEeCCEEEEEecCCCcc-----Cc--CccCCCCCCceEEEEecccHHH
Confidence 5789999999999999999987654322455666666666665422211 00 111123466799999964 999
Q ss_pred HHHHHHHCCCeeccCCccC---CCCcEEEEEeCCCCCEEEEeee
Q 045980 80 AYKRAVENGAVPVSEPEDK---EWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~---~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
++++++++|++++..+... .++.+.+||+||+||+||+.++
T Consensus 82 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 82 LVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred HHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 9999999999987666432 1234789999999999999874
No 25
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.84 E-value=2.1e-19 Score=107.64 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=81.1
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC--CHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA--DVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--d~~ 78 (125)
|.|+|++++++||+++|||++.... ...+.+..++..+.+....... .. ....+..|++|.++ |++
T Consensus 10 L~v~Dl~~s~~FY~~~lG~~~~~~~--~~~~~~~~~g~~l~l~~~~~~~---------~~-~~~~~~~hiaf~v~~~dv~ 77 (139)
T PRK04101 10 FSVSNLEKSIEFYEKVLGAKLLVKG--RKTAYFDLNGLWIALNEEKDIP---------RN-EIHQSYTHIAFSIEEEDFD 77 (139)
T ss_pred EEecCHHHHHHHHHhccCCEEEeec--CeeEEEecCCeEEEeeccCCCC---------Cc-cCCCCeeEEEEEecHHHHH
Confidence 5799999999999999999987542 2455666677776664321100 00 01234568888886 999
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+++++++++|+++...+...+++.+.+||+|||||+|||.+..
T Consensus 78 ~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 78 HWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeCC
Confidence 9999999999998766666666669999999999999998753
No 26
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.84 E-value=1.2e-19 Score=106.45 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=75.7
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHHHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAA 80 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 80 (125)
|.|+|++++++||+++|||++..... .++.+..++..+.+............. ..........+..+++.++|++++
T Consensus 5 l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~h~~~~~~~~dv~~~ 81 (125)
T cd08357 5 IPVRDLEAARAFYGDVLGCKEGRSSE--TWVDFDFFGHQLVAHLSPNFNADASDN-AVDGHPVPVPHFGLILSEEEFDAL 81 (125)
T ss_pred EEeCCHHHHHHHHHHhcCCEEeeccC--CcccccccCcEEEEEeccCCCcccccC-CCCCCccCCceEEEEEeHHHHHHH
Confidence 57999999999999999999865432 344455555555544322111000000 000000011233356677999999
Q ss_pred HHHHHHCCCeeccCCcc----CCCCcEEEEEeCCCCCEEEEeee
Q 045980 81 YKRAVENGAVPVSEPED----KEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 81 ~~~~~~~g~~~~~~~~~----~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+++++++|+++..+|.. .+++.+.+||+|||||.|||.++
T Consensus 82 ~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 82 AERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 99999999998876653 23445899999999999999763
No 27
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.84 E-value=1.6e-19 Score=107.19 Aligned_cols=110 Identities=19% Similarity=0.261 Sum_probs=80.5
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC--CHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA--DVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--d~~ 78 (125)
|.|+|++++++||+++|||++....+ ....+..++..+.+....... . .....+..|++|.++ |++
T Consensus 6 l~V~Dl~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~l~l~~~~~~~--------~--~~~~~~~~hiaf~v~~~dld 73 (131)
T cd08363 6 FSVSNLDKSISFYKHVFMEKLLVLGE--KTAYFTIGGTWLALNEEPDIP--------R--NEIRQSYTHIAFTIEDSEFD 73 (131)
T ss_pred EEECCHHHHHHHHHHhhCCEEeccCC--ccceEeeCceEEEEEccCCCC--------c--CCcCccceEEEEEecHHHHH
Confidence 57999999999999999999865322 344556667666654322110 0 011235678999886 599
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
+++++++++|+++..++....++.+.+||+||+||+|||.++..
T Consensus 74 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~~ 117 (131)
T cd08363 74 AFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGTL 117 (131)
T ss_pred HHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCcH
Confidence 99999999999987555544455699999999999999998754
No 28
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.83 E-value=4e-19 Score=103.81 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=78.8
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCC-eEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE--CCH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQ-TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY--ADV 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~d~ 77 (125)
|.|.|++++++||+++|||++.... ...++.+..++ ..+.+....... ..+. ..+.....+..|++|.+ +|+
T Consensus 6 l~v~d~~~s~~Fy~~~lG~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~~dl 80 (122)
T cd08354 6 LYVDDLEAAEAFYEDVLGLELMLKE-DRRLAFFWVGGRGMLLLFDPGATS---TPGG-EIPPHGGSGPGHFAFAIPAEEL 80 (122)
T ss_pred EEeCCHHHHHHHHHhccCCEEeecC-CCceEEEEcCCCcEEEEEecCCcc---cccC-CCCCCCCCCccEEEEEcCHHHH
Confidence 5799999999999999999987642 23456666655 444444322211 0111 01111123456788877 689
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+++++++.++|+++...+. ..++.+.++++||+||.||++++
T Consensus 81 ~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 81 AEWEAHLEAKGVAIESEVQ-WPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred HHHHHHHHhcCCceecccc-CCCCeeEEEEECCCCCEEEEecC
Confidence 9999999999998876554 45666899999999999999874
No 29
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.83 E-value=3.3e-19 Score=104.44 Aligned_cols=111 Identities=16% Similarity=0.191 Sum_probs=76.7
Q ss_pred CeecCHHHHHHHHHHhcCCeEEee--cCCc--eeeEEee-CCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTL--DHSH--RWGELES-GQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~--~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (125)
|.|+|++++++||+++|||++... .+.. ....+.. ++..+.+........ .. +.....+..|++|.|+
T Consensus 7 l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~---~~~~~~g~~hi~f~v~ 79 (125)
T cd07241 7 IWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAP----SP---NEGERTGWAHLAFSVG 79 (125)
T ss_pred EEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCC----Cc---ccCCCCceEEEEEECC
Confidence 579999999999999999997422 1111 1233433 345566654222110 00 1111346689999995
Q ss_pred ---CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEe
Q 045980 76 ---DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 76 ---d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~ 118 (125)
|+++++++++++|+++..++...++|.+.++++|||||.|||.
T Consensus 80 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 80 SKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 5899999999999998877766667767788999999999984
No 30
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.83 E-value=1.7e-19 Score=106.23 Aligned_cols=115 Identities=15% Similarity=0.275 Sum_probs=79.3
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec---C-CceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD---H-SHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d 76 (125)
|.|+|++++++||+++|||+..... + +...+.+..++..+.+....... ....... +.. ..+..|++|.|+|
T Consensus 7 l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~--~~~~~~~-~~~-~~g~~~i~~~v~d 82 (128)
T TIGR03081 7 IAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGED--SPIAKFL-EKN-GGGIHHIAIEVDD 82 (128)
T ss_pred EEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCC--ChHHHHH-hcC-CCceEEEEEEcCC
Confidence 5789999999999999999985431 1 22334555566667665321111 0001000 011 3356799999999
Q ss_pred HHHHHHHHHHCCCeeccC-CccCCCCcEEEEE--eCCCCCEEEEee
Q 045980 77 VDAAYKRAVENGAVPVSE-PEDKEWGQKVGYV--RDINGIVVRMGS 119 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~-~~~~~~g~~~~~~--~Dp~G~~iel~~ 119 (125)
+++++++++++|++++.+ +...+||.+..++ +||||++||+.+
T Consensus 83 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 83 IEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred HHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 999999999999998864 5666677666677 799999999974
No 31
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.83 E-value=7.7e-19 Score=107.73 Aligned_cols=118 Identities=16% Similarity=0.223 Sum_probs=77.2
Q ss_pred CeecCHHHHHHHHHHhcCCeEEee-----cC----C-------------ceeeEEeeC-CeEEEEeeccccccccccCCC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTL-----DH----S-------------HRWGELESG-QTTIAFTRLHQHETDELTGSV 57 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~-----~~----~-------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 57 (125)
|.|+|+++|++||+++|||++... .. . ...+.+..+ +..+.+........ ..
T Consensus 10 i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~---~~-- 84 (162)
T TIGR03645 10 ISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN---PE-- 84 (162)
T ss_pred EEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC---CC--
Confidence 579999999999999999987431 10 0 112233333 34566654332111 01
Q ss_pred CCCCCCCCCCeEEEEEECCHHHHHHHHHHCCCeeccCC-ccC-C--CCcEEEEEeCCCCCEEEEeeeccC
Q 045980 58 QTPSSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEP-EDK-E--WGQKVGYVRDINGIVVRMGSYVQA 123 (125)
Q Consensus 58 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~-~~~-~--~g~~~~~~~Dp~G~~iel~~~~~~ 123 (125)
..+...+.+..|++|.|+|+++++++++++|+++...+ ... + .+.+.+||+|||||.|||+++...
T Consensus 85 ~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 85 DNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred cccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 00111145788999999999999999999998764432 211 1 123789999999999999997653
No 32
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.83 E-value=1.1e-18 Score=102.78 Aligned_cols=115 Identities=25% Similarity=0.379 Sum_probs=92.7
Q ss_pred Ceec-CHHHHHHHHHHhcCCeEEee----c----------CCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCC
Q 045980 1 IYVT-DVAKSVAFYAKAFDYTVRTL----D----------HSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQR 65 (125)
Q Consensus 1 i~v~-d~~~a~~FY~~~lg~~~~~~----~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (125)
|..+ |.++|++||+++||++.... + +...|+.+..+++.|++....... . +...++
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~-------~--~~~~~~ 76 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDM-------G--ATEGGG 76 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCcc-------C--cccCCC
Confidence 3466 99999999999999987532 2 356789999999999987643211 1 111134
Q ss_pred CCeEEEEEECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeeccCC
Q 045980 66 QPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQAS 124 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~~~ 124 (125)
....|.+.++|++++++++.+.|++++.++...+||.+...++||+|+.|.|..+.+..
T Consensus 77 ~s~~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~~~~ 135 (136)
T COG2764 77 TSLSLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPVESV 135 (136)
T ss_pred eeEEEEEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCccCC
Confidence 56778888999999999999999999999999999999999999999999999887653
No 33
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.83 E-value=4.9e-19 Score=101.77 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=77.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCC-ceeeEEeeCCe-EEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHS-HRWGELESGQT-TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 78 (125)
|.|.|++++.+||+++||+++...... .....+..++. .+.+........ . +. ...+..|++|.|+|++
T Consensus 6 l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~----~----~~-~~~~~~~~~~~v~d~~ 76 (114)
T cd07245 6 LRVPDLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEEDPPDA----L----PE-GPGRDDHIAFRVDDLD 76 (114)
T ss_pred EecCCHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEecCCCcc----c----cC-CCcccceEEEEeCCHH
Confidence 578999999999999999987643221 13344554443 555554322111 0 11 1345679999999999
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEE
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRM 117 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel 117 (125)
+++++++++|++++.++.. .++.+.+++.||+||+|||
T Consensus 77 ~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 77 AFRARLKAAGVPYTESDVP-GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHcCCCcccccCC-CCCccEEEEECCCCCEEeC
Confidence 9999999999998776654 4566899999999999996
No 34
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.82 E-value=6.9e-19 Score=103.30 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=73.2
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEee-CCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC--CH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELES-GQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA--DV 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--d~ 77 (125)
|.|+|+++|++||+++||++.....+ .+..+.. ++..+.+.... . ..+..|++|.++ |+
T Consensus 10 l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~l~~~~~~--------------~--~~~~~h~a~~v~~~dl 71 (123)
T cd08351 10 VPARDREASAEFYAEILGLPWAKPFG--PFAVVKLDNGVSLDFAQPD--------------G--EIPPQHYAFLVSEEEF 71 (123)
T ss_pred EEcCCHHHHHHHHHHhcCCEeeeccC--CEEEEEcCCCcEEEEecCC--------------C--CCCcceEEEEeCHHHH
Confidence 57999999999999999999865322 2222332 23344433210 0 123457777774 79
Q ss_pred HHHHHHHHHCCCeeccCCccC-------CCCcEEEEEeCCCCCEEEEeee
Q 045980 78 DAAYKRAVENGAVPVSEPEDK-------EWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~-------~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+++++++.++|+++...+... .+|.+.+||+|||||.|||++.
T Consensus 72 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 72 DRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 999999999999987665542 4677999999999999999986
No 35
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.82 E-value=6.3e-19 Score=101.79 Aligned_cols=105 Identities=19% Similarity=0.239 Sum_probs=75.1
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE--CCHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY--ADVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~d~~ 78 (125)
|.|+|++++++||+++|||++....+ ....+..++..+.+...... .+ + ..+..|++|.| +|++
T Consensus 4 l~v~d~~~s~~Fy~~~lg~~~~~~~~--~~~~~~~~~~~l~~~~~~~~-----~~----~---~~~~~hiaf~v~~~d~~ 69 (113)
T cd08345 4 LIVKDLNKSIAFYRDILGAELIYSSS--KEAYFELAGLWICLMEEDSL-----QG----P---ERTYTHIAFQIQSEEFD 69 (113)
T ss_pred EEECCHHHHHHHHHHhcCCeeeeccC--ceeEEEecCeEEEeccCCCc-----CC----C---CCCccEEEEEcCHHHHH
Confidence 57999999999999999999865433 23344455555555432110 00 1 23456888888 5899
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
++++++.++|+++........++.+.+|++||+||.|||++
T Consensus 70 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 70 EYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred HHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 99999999999986543333344589999999999999985
No 36
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.82 E-value=1.7e-18 Score=101.04 Aligned_cols=108 Identities=21% Similarity=0.238 Sum_probs=76.3
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec--C--CceeeEEeeCC----eEEEEeeccccccccccCCCCCCCCCCCCCeEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD--H--SHRWGELESGQ----TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF 72 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~--~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
|.|+|++++.+||+++|||++.... . ....+.+..++ ..+.+....... . +...+.+..|++|
T Consensus 6 i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-----~----~~~~~~~~~~i~~ 76 (121)
T cd07233 6 LRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTE-----E----PYDNGNGFGHLAF 76 (121)
T ss_pred EEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCC-----C----CcCCCCCeEEEEE
Confidence 5789999999999999999986431 2 12234444432 344443211100 0 1111336679999
Q ss_pred EECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEe
Q 045980 73 AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 73 ~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~ 118 (125)
.++|+++++++++++|+++..++... .+.+.+||+||+||+|||+
T Consensus 77 ~v~did~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 77 AVDDVYAACERLEEMGVEVTKPPGDG-GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred EeCCHHHHHHHHHHCCCEEeeCCccC-CCceEEEEECCCCCEEEeC
Confidence 99999999999999999998877655 4558899999999999985
No 37
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.81 E-value=3.1e-18 Score=104.53 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=77.4
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeC---CeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECC-
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESG---QTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD- 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d- 76 (125)
|.|+|++++.+||+++|||++..... ........+ +..+.+....... ...+ ...+..|++|.|+|
T Consensus 7 i~V~Dle~s~~FY~~~LG~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~-------~~~~--~~~~l~Hiaf~v~d~ 76 (157)
T cd08347 7 LTVRDPEATAAFLTDVLGFREVGEEG-DRVRLEEGGGGPGAVVDVLEEPDQP-------RGRP--GAGTVHHVAFRVPDD 76 (157)
T ss_pred EEeCCHHHHHHHHHHhcCCEEEeeeC-CEEEEEecCCCCCCEEEEEeCCCCC-------CCcc--cCCceEEEEEECCCH
Confidence 57999999999999999999865433 222333333 5566665432100 0011 12356799999988
Q ss_pred --HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 77 --VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 77 --~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
++++++++.+.|+.+. .+....++ +++||+||+||.|||++..+
T Consensus 77 ~dvd~~~~~L~~~Gv~~~-~~~~~~~~-~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 77 EELEAWKERLEALGLPVS-GIVDRFYF-KSLYFREPGGILFEIATDGP 122 (157)
T ss_pred HHHHHHHHHHHHCCCCcc-cccccccE-EEEEEECCCCcEEEEEECCC
Confidence 8999999999999754 34444444 88999999999999998764
No 38
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.80 E-value=5.1e-18 Score=96.78 Aligned_cols=107 Identities=26% Similarity=0.505 Sum_probs=83.5
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecC--CceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDH--SHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 78 (125)
|.|+|++++.+||+++||++...... ...++.+..++..+.+........ + ....+..|++|.|+|++
T Consensus 4 i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~---------~-~~~~~~~~~~~~v~~~~ 73 (112)
T cd06587 4 LTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLGGTRLELFEGDEPAP---------A-PSGGGGVHLAFEVDDVD 73 (112)
T ss_pred eeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecCCceEEEecCCCCCC---------c-ccCCCeeEEEEECCCHH
Confidence 57899999999999999999876543 245666776777888776433211 0 11446789999999999
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEE
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRM 117 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel 117 (125)
++++++.+.|+.+..++....++.+.+++.||+||+|+|
T Consensus 74 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 74 AAYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 999999999999887776455667999999999999986
No 39
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.80 E-value=4.1e-18 Score=101.11 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=72.3
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCcee-----eEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRW-----GELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (125)
|.|+|++++++||+++||+++....+...+ ..+..++..+.+.... .+. ..+..|++|.|+
T Consensus 10 l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~------------~~~--~~~~~Hiaf~v~ 75 (131)
T cd08364 10 LIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGD------------SLQ--ERTYNHIAFKIS 75 (131)
T ss_pred EEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCC------------CCC--CCCceEEEEEcC
Confidence 579999999999999999987544322111 1222345555543210 010 225678999997
Q ss_pred --CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 76 --DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 76 --d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+++++++++.++|+++..+......+.+.+||+||+||.|||...
T Consensus 76 ~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 76 DSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred HHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecC
Confidence 799999999999998753322222224899999999999999864
No 40
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.80 E-value=4.6e-18 Score=98.64 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=76.8
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeC-Ce--EEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC--
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESG-QT--TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA-- 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-- 75 (125)
|.|+|++++.+||+++|||++....+ ..+.+..+ +. .+.+... + ..+..|++|.|+
T Consensus 8 l~v~d~~~~~~FY~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--------------~---~~~~~h~~~~v~~~ 68 (117)
T cd07240 8 LEVPDLERALEFYTDVLGLTVLDRDA--GSVYLRCSEDDHHSLVLTEG--------------D---EPGVDALGFEVASE 68 (117)
T ss_pred EecCCHHHHHHHHHhccCcEEEeecC--CeEEEecCCCCcEEEEEEeC--------------C---CCCceeEEEEcCCH
Confidence 57899999999999999999876543 33444444 22 2333210 0 125578999996
Q ss_pred -CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 76 -DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 76 -d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+++++++++.++|+++...+...+++.+.+|+.||+||.||++...
T Consensus 69 ~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 69 EDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred HHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEcc
Confidence 6899999999999998877765666669999999999999999764
No 41
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=1e-17 Score=98.34 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=79.8
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCC--eEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC---
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQ--TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA--- 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--- 75 (125)
|.|.|++++++||+++|||++....+ ..+.+..++ ..+.+...+... .+.....+..|++|.|+
T Consensus 8 l~v~d~~~~~~Fy~~~lG~~~~~~~~--~~~~l~~~~~~~~l~l~~~~~~~---------~~~~~~~~~~hi~f~v~~~~ 76 (125)
T cd07255 8 LRVADLERSLAFYQDVLGLEVLERTD--STAVLGTGGKRPLLVLEEDPDAP---------PAPPGATGLYHFAILLPSRA 76 (125)
T ss_pred EEECCHHHHHHHHHhccCcEEEEcCC--CEEEEecCCCeEEEEEEeCCCCC---------cccCCCCcEEEEEEECCCHH
Confidence 57899999999999999999976533 455566554 355554432210 00111345679999996
Q ss_pred CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeeccCC
Q 045980 76 DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQAS 124 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~~~ 124 (125)
+++++++++.++|+++.. +...+++ +.+|++||+||+|||....+..
T Consensus 77 ~v~~~~~~l~~~g~~~~~-~~~~~~~-~~~~~~DPdG~~iEi~~~~~~~ 123 (125)
T cd07255 77 DLAAALRRLIELGIPLVG-ASDHLVS-EALYLSDPEGNGIEIYADRPRE 123 (125)
T ss_pred HHHHHHHHHHHcCCceec-cccccce-eEEEEECCCCCEEEEEEecCcc
Confidence 589999999999998754 3444455 7899999999999999877653
No 42
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.79 E-value=5.9e-18 Score=98.67 Aligned_cols=106 Identities=25% Similarity=0.310 Sum_probs=75.2
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE---CCH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY---ADV 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~d~ 77 (125)
|.|+|++++++||+++|||++....+ ....+..++....+..... .+ ..+..|++|.+ +++
T Consensus 9 l~v~d~~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~~~~~v~~~~~l 72 (120)
T cd08362 9 LGVPDLAAAAAFYREVWGLSVVAEDD--GIVYLRATGSEHHILRLRR-----------SD---RNRLDVVSFSVASRADV 72 (120)
T ss_pred EecCCHHHHHHHHHhCcCcEEEEecC--CEEEEECCCCccEEEEecc-----------CC---CCCCceEEEEeCCHHHH
Confidence 57899999999999999999865433 3444443332211111100 00 12446899998 578
Q ss_pred HHHHHHHHHCCCeeccCCc--cCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 78 DAAYKRAVENGAVPVSEPE--DKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~--~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
++++++++++|+++..++. ..+|+.+.++|+||+||.|+|+...+
T Consensus 73 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 119 (120)
T cd08362 73 DALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADVE 119 (120)
T ss_pred HHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEeccc
Confidence 9999999999999876653 34567789999999999999998653
No 43
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.79 E-value=6.1e-18 Score=102.51 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=75.6
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec--CCc--eeeEEeeCC--eEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD--HSH--RWGELESGQ--TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY 74 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~--~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 74 (125)
|.|.|++++.+||+++|||++.... +.. ..+.+..++ ....+....... .. +...+.+..|++|.|
T Consensus 23 l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~---~~~~~~g~~hi~f~v 94 (150)
T TIGR00068 23 LRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWG-----TE---KYDLGNGFGHIAIGV 94 (150)
T ss_pred EEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCC-----CC---cccCCCceeEEEEec
Confidence 5799999999999999999985432 111 223333221 121121111000 00 011134677999999
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCC-cEEEEEeCCCCCEEEEeeecc
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWG-QKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g-~~~~~~~Dp~G~~iel~~~~~ 122 (125)
+|++++++++.++|++++.++...+.+ .+.+||+||+||+|||+++..
T Consensus 95 ~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 95 DDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred CCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 999999999999999988776533333 367899999999999998764
No 44
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.79 E-value=7.9e-18 Score=98.56 Aligned_cols=104 Identities=12% Similarity=0.063 Sum_probs=71.9
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEee-C---CeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC-
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELES-G---QTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA- 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 75 (125)
|.|+|++++++||+++|||++....+. ..+.+.. + ...+.+.. .. ..+..|++|.|+
T Consensus 10 l~v~Dl~~s~~FY~~~lG~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~--------------~~---~~~~~hiaf~v~~ 71 (122)
T cd07265 10 LRVLDLEEAIKHYREVLGLDEVGRDDQ-GRVYLKAWDEFDHHSIVLRE--------------AD---TAGLDFMGFKVLD 71 (122)
T ss_pred EEeCCHHHHHHHHHhccCCEeeeecCC-ceEEEEccCCCcccEEEecc--------------CC---CCCeeEEEEEeCC
Confidence 579999999999999999998654321 2223322 1 11222210 00 235568999996
Q ss_pred --CHHHHHHHHHHCCCeeccCCcc-CCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 76 --DVDAAYKRAVENGAVPVSEPED-KEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 76 --d~~~~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
|++++++++.++|+++...+.. .+...+.+||+||+||.||++....
T Consensus 72 ~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~~ 121 (122)
T cd07265 72 DADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADKE 121 (122)
T ss_pred HHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEecc
Confidence 8999999999999998765433 2222378999999999999998654
No 45
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.79 E-value=1.7e-17 Score=96.82 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=73.6
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECC---H
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD---V 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d---~ 77 (125)
|.|+|++++.+||+++||++.....+ ....+..++..+.+....... .+ ..+..|++|.+++ +
T Consensus 7 l~v~d~~~a~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~h~~f~v~~~~dl 72 (120)
T cd07254 7 LNVDDLEASIAFYSKLFGVEPTKVRD--DYAKFLLEDPRLNFVLNERPG---------AP---GGGLNHLGVQVDSAEEV 72 (120)
T ss_pred EEeCCHHHHHHHHHHHhCCeEecccC--CeeEEEecCCceEEEEecCCC---------CC---CCCeeEEEEEeCCHHHH
Confidence 57899999999999999998754432 223333333233322111100 00 1356789999977 7
Q ss_pred HHHHHHHHHCCCeeccCCccCCC--CcEEEEEeCCCCCEEEEeeecc
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEW--GQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~--g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
+++++++.+.|+++...+....+ +.+.+|++||+||.|||+....
T Consensus 73 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 119 (120)
T cd07254 73 AEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTLG 119 (120)
T ss_pred HHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEeec
Confidence 88999999999998766544321 2368999999999999998653
No 46
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.79 E-value=3.6e-17 Score=97.16 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=77.6
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeC---CeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESG---QTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADV 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 77 (125)
|.|+|++++++||+++|||++....+...+..+..+ +..+.+....... . .....+..|++|.|+|+
T Consensus 7 l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-----~-----~~~~~~~~h~~f~v~~~ 76 (134)
T cd08348 7 LYVRDLEAMVRFYRDVLGFTVTDRGPLGGLVFLSRDPDEHHQIALITGRPAA-----P-----PPGPAGLNHIAFEVDSL 76 (134)
T ss_pred EEecCHHHHHHHHHHhcCCEEEeeccCCcEEEEEecCCCceEEEEEecCCCC-----C-----CCCCCCceEEEEEeCCH
Confidence 578999999999999999998755432244555443 3345554322110 0 01134667899999876
Q ss_pred H---HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeeccC
Q 045980 78 D---AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQA 123 (125)
Q Consensus 78 ~---~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~~ 123 (125)
+ ++++++.+.|+++...+. .+.+ +.+|++||+||+|||+...++
T Consensus 77 ~~v~~~~~~l~~~G~~~~~~~~-~~~~-~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 77 DDLRDLYERLRAAGITPVWPVD-HGNA-WSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHCCCCccccCC-CCce-eEEEEECCCCCEEEEEEcCCC
Confidence 5 588999999998776543 3333 899999999999999987765
No 47
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.78 E-value=1.2e-17 Score=97.80 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=73.4
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE--CCHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY--ADVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~d~~ 78 (125)
|.|+|++++.+||+++||+++....+. ...+..++..+.+...... .+ ..+..|++|.+ +|++
T Consensus 7 l~v~d~~~~~~FY~~vLG~~~~~~~~~--~~~~~~~~~~~~l~~~~~~----------~~---~~~~~hi~f~v~~~dl~ 71 (121)
T cd07244 7 LAVSDLERSVAFYVDLLGFKLHVRWDK--GAYLEAGDLWLCLSVDANV----------GP---AKDYTHYAFSVSEEDFA 71 (121)
T ss_pred EEECCHHHHHHHHHHhcCCEEEEecCC--ceEEecCCEEEEEecCCCC----------CC---CCCeeeEEEEeCHHHHH
Confidence 578999999999999999998654332 3344555555544321110 01 23456888887 6899
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
++++++.++|+++..++.. .+ +.+||.||+||.|||+.-
T Consensus 72 ~~~~~l~~~G~~~~~~~~~--~~-~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 72 SLKEKLRQAGVKEWKENTS--EG-DSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHHcCCcccCCCCC--Cc-cEEEEECCCCCEEEEEeC
Confidence 9999999999998765443 24 799999999999999863
No 48
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.78 E-value=3.7e-17 Score=96.33 Aligned_cols=112 Identities=20% Similarity=0.282 Sum_probs=78.3
Q ss_pred CeecCHHHHHHHHHHhc---CCeEEeecCC-ceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC-
Q 045980 1 IYVTDVAKSVAFYAKAF---DYTVRTLDHS-HRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA- 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~l---g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 75 (125)
|.|+|++++.+||+++| ||++....+. ..+... .++..+.+........ . .......+..|++|.|+
T Consensus 7 i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~----~---~~~~~~~g~~hia~~v~~ 78 (128)
T cd07242 7 LTVRDLERSRAFYDWLLGLLGFEEVKEWEDGRSWRAG-DGGTYLVLQQADGESA----G---RHDRRNPGLHHLAFRAPS 78 (128)
T ss_pred EEeCCHHHHHHHHHHHHhhcCCEEEEeeccCceEEec-CCceEEEEEecccCCC----c---ccccCCcCeeEEEEEcCC
Confidence 57899999999999999 9998654321 122222 3566777764332211 0 01111345678999996
Q ss_pred --CHHHHHHHHHHCCCeeccCCccC---CCCcEEEEEeCCCCCEEEEeee
Q 045980 76 --DVDAAYKRAVENGAVPVSEPEDK---EWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 76 --d~~~~~~~~~~~g~~~~~~~~~~---~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
|+++++++++++|+++...+... ..+.+.+|++||+||+|||+.+
T Consensus 79 ~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 79 REAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred HHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 58999999999999988766542 2345899999999999999864
No 49
>PRK06724 hypothetical protein; Provisional
Probab=99.78 E-value=1.6e-17 Score=98.15 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=71.7
Q ss_pred CeecCHHHHHHHHHHhc---CCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE---
Q 045980 1 IYVTDVAKSVAFYAKAF---DYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY--- 74 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--- 74 (125)
|.|+|+++|++||+++| |++.... ..+..+...+.+..... . .+. ..+..|++|.|
T Consensus 13 l~V~Dle~s~~FY~~vlg~lg~~~~~~------~~~~~g~~~l~l~~~~~--------~--~~~--~~g~~h~af~v~~~ 74 (128)
T PRK06724 13 FWVANLEESISFYDMLFSIIGWRKLNE------VAYSTGESEIYFKEVDE--------E--IVR--TLGPRHICYQAINR 74 (128)
T ss_pred EEeCCHHHHHHHHHHHHhhCCcEEeee------EeeeCCCeeEEEecCCc--------c--ccC--CCCceeEEEecCCh
Confidence 57999999999999976 5554310 11223344454432111 0 011 23556999987
Q ss_pred CCHHHHHHHHHHCCCeeccCCccC---CCCcEEEEEeCCCCCEEEEeeec
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDK---EWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~---~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+++++++++++++|++++.+|... .+|.+.++|+|||||.||+....
T Consensus 75 ~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 75 KVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred HHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 889999999999999987776543 26768899999999999998763
No 50
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.78 E-value=2.2e-17 Score=97.94 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=75.5
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCC---ceeeEEeeCCe--EEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHS---HRWGELESGQT--TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (125)
|.|+|++++++||+++||+++...... .....+..++. .+.+... .. ..+..|++|.|+
T Consensus 5 l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~--~~~~~hl~~~v~ 68 (131)
T cd08343 5 LRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPG--------------PE--RPGLHHVAFEVE 68 (131)
T ss_pred EEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcC--------------CC--CCCeeEEEEEcC
Confidence 579999999999999999998543221 12334444332 2222210 00 236678999998
Q ss_pred CHH---HHHHHHHHCCCeeccCCccCCC-CcEEEEEeCCCCCEEEEeeeccC
Q 045980 76 DVD---AAYKRAVENGAVPVSEPEDKEW-GQKVGYVRDINGIVVRMGSYVQA 123 (125)
Q Consensus 76 d~~---~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~Dp~G~~iel~~~~~~ 123 (125)
|++ +++++++++|++++.++...++ +.+.++|+||+||+|||.+..+.
T Consensus 69 d~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~ 120 (131)
T cd08343 69 SLDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYR 120 (131)
T ss_pred CHHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCcc
Confidence 874 7899999999998877665443 35788999999999999986543
No 51
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.78 E-value=2.3e-17 Score=97.51 Aligned_cols=106 Identities=15% Similarity=0.249 Sum_probs=80.8
Q ss_pred Cee-cCHHHHHHHHHHhcCCeEEeec--------------CCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCC
Q 045980 1 IYV-TDVAKSVAFYAKAFDYTVRTLD--------------HSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQR 65 (125)
Q Consensus 1 i~v-~d~~~a~~FY~~~lg~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (125)
|.+ .|.++|++||+++||+++.... +...++.++.++..+++....... .. ..+
T Consensus 5 L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~-------~~----~~~ 73 (128)
T cd06588 5 LWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGF-------PF----TFG 73 (128)
T ss_pred EeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCC-------CC----CCC
Confidence 346 8999999999999999986431 122578999999988887532211 00 133
Q ss_pred CCeEEEEEECC---HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEe
Q 045980 66 QPIEVCFAYAD---VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 66 ~~~~~~~~v~d---~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~ 118 (125)
...++++.|+| ++++++++.+ |++++.++...+||.+.++++||+|+.|+|.
T Consensus 74 ~~~~l~i~~~~~e~v~~~~~~l~~-~g~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 74 NGISLSVECDSEEEADRLFEALSE-GGTVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred CCEEEEEECCCHHHHHHHHHHHhc-CCeEeccchhcCcccccEEEECCCCCEEEeC
Confidence 56789999876 7788888755 5588888888899999999999999999974
No 52
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.78 E-value=2.4e-17 Score=99.22 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=68.4
Q ss_pred CeecCHHHHHHHHHHhcCCeEEee--cCCc--e-eeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTL--DHSH--R-WGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~--~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (125)
|.|+|++++.+||+++|||++... .+.. . ...+..+... +... . ...+ .++..|++|.|+
T Consensus 12 l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~~-h~~~--------~---~~~~---~~~~~Hiaf~v~ 76 (143)
T cd07243 12 LTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNKP-HDIA--------F---VGGP---DGKLHHFSFFLE 76 (143)
T ss_pred EecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCCc-ceEE--------E---ecCC---CCCceEEEEEcC
Confidence 578999999999999999997432 1111 1 1122221110 0000 0 0011 246679999999
Q ss_pred CHHH---HHHHHHHCCCeeccCCccCC-CCcEEEEEeCCCCCEEEEee
Q 045980 76 DVDA---AYKRAVENGAVPVSEPEDKE-WGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 76 d~~~---~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~Dp~G~~iel~~ 119 (125)
|+++ +.+++.++|+++...|.... ++.+++||+||+||.|||..
T Consensus 77 d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 77 SWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred CHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 9887 67899999999865554433 34578999999999999975
No 53
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.77 E-value=4.8e-17 Score=94.15 Aligned_cols=103 Identities=18% Similarity=0.094 Sum_probs=72.3
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHHHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAA 80 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 80 (125)
|.|+|++++++||++ |||++....+ ..+.+..++....+..... + + ..+..|++|.|+|.+++
T Consensus 9 l~v~Dl~~s~~FY~~-lGl~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~----~---~~~~~~~af~v~~~~~~ 71 (113)
T cd07267 9 FEHPDLDKAERFLTD-FGLEVAARTD--DELYYRGYGTDPFVYVARK-------G----E---KARFVGAAFEAASRADL 71 (113)
T ss_pred EccCCHHHHHHHHHH-cCCEEEEecC--CeEEEecCCCccEEEEccc-------C----C---cCcccEEEEEECCHHHH
Confidence 578999999999999 9998864432 2334444322211111100 0 0 23556899999999999
Q ss_pred HHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 81 YKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
.+.+.+.|..++..+. .+++.+.++|+||+||.|||+...
T Consensus 72 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~DPdG~~iEl~~~~ 111 (113)
T cd07267 72 EKAAALPGASVIDDLE-APGGGKRVTLTDPDGFPVELVYGQ 111 (113)
T ss_pred HHHHHcCCCeeecCCC-CCCCceEEEEECCCCCEEEEEecc
Confidence 9999999998765443 456668999999999999998653
No 54
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=2.2e-17 Score=97.07 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=72.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCC--eEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECC--
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQ--TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD-- 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d-- 76 (125)
|.|+|++++.+||+++|||++....+ ..+.+..++ ..+.+.. + ..+..+++|.|++
T Consensus 12 l~v~d~~~s~~FY~~vLG~~~~~~~~--~~~~l~~~~~~~~i~l~~----------~--------~~~~~~iaf~v~~~~ 71 (124)
T cd08361 12 LGTRDLAGATRFATDILGLQVAERTA--KATYFRSDARDHTLVYIE----------G--------DPAEQASGFELRDDD 71 (124)
T ss_pred EeeCCHHHHHHHHHhccCceeccCCC--CeEEEEcCCccEEEEEEe----------C--------CCceEEEEEEECCHH
Confidence 57899999999999999999864332 234444432 2333321 0 0133579999975
Q ss_pred -HHHHHHHHHHCCCeeccCCcc---CCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 77 -VDAAYKRAVENGAVPVSEPED---KEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 77 -~~~~~~~~~~~g~~~~~~~~~---~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
++++++++.++|+++...+.. ...+.+.+||+|||||.||++....
T Consensus 72 dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 72 ALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred HHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEeee
Confidence 999999999999987654432 1334477899999999999987653
No 55
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.77 E-value=1.6e-17 Score=97.64 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=79.4
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCC-----ceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHS-----HRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (125)
|.|+|++++.+||+++|||+....... .....+..++..+.+........ . ..... ...+.+..|++|.|+
T Consensus 6 l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~-~~~~~--~~~~~g~~h~~f~v~ 81 (128)
T cd07249 6 IAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDS-P-IAKFL--EKRGEGLHHIAFEVD 81 (128)
T ss_pred EEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCC-c-HHHHH--hcCCCceEEEEEEeC
Confidence 578999999999999999998654221 23456666777777764322111 0 00000 111456789999999
Q ss_pred CHHHHHHHHHHCCCeeccCCc-cCCCCcEEEEEeCCC---CCEEEEee
Q 045980 76 DVDAAYKRAVENGAVPVSEPE-DKEWGQKVGYVRDIN---GIVVRMGS 119 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~Dp~---G~~iel~~ 119 (125)
|++++++++.++|+++..++. ...+| +.+++.||+ |++|||++
T Consensus 82 d~~~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 82 DIDAALARLKAQGVRLLQEGPRIGAGG-KRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CHHHHHHHHHHCCCeeeccCCCccCCC-CEEEEEecCCCceEEEEecC
Confidence 999999999999999988776 44455 555555555 99999975
No 56
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.77 E-value=3.6e-17 Score=95.64 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=71.2
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCC----eEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC-
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQ----TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA- 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 75 (125)
|.|+|++++.+||+++|||++....+ ..+.+...+ ..+.+.. .+ ..+..|++|.++
T Consensus 12 l~v~dl~~a~~FY~~~lG~~~~~~~~--~~~~l~~~~~~~~~~~~l~~--------------~~---~~~~~h~af~v~~ 72 (121)
T cd09013 12 LLTPKPEESLWFFTDVLGLEETGREG--QSVYLRAWGDYEHHSLKLTE--------------SP---EAGLGHIAWRASS 72 (121)
T ss_pred EEeCCHHHHHHHHHhCcCCEEEeecC--CeEEEEeccCCCccEEEEee--------------CC---CCceEEEEEEcCC
Confidence 57999999999999999999865433 233343321 1222210 01 235679999986
Q ss_pred --CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 76 --DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 76 --d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
+++++++++.++|+++...+....++ ..+||+||+||.||++...+
T Consensus 73 ~~~v~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iEl~~~~~ 120 (121)
T cd09013 73 PEALERRVAALEASGLGIGWIEGDPGHG-KAYRFRSPDGHPMELYWEVE 120 (121)
T ss_pred HHHHHHHHHHHHHcCCccccccCCCCCc-ceEEEECCCCCEEEEEEecc
Confidence 68899999999999864333333445 78999999999999997654
No 57
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=4.9e-17 Score=96.81 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=73.6
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeC--C--eEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESG--Q--TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d 76 (125)
|.|+|++++.+||+++||+++..... ....++..+ + ..+.+.... . ...+..|++|.|+|
T Consensus 9 l~v~dl~~s~~FY~~vlGl~~~~~~~-~~~~~~~~~~~~~~~~i~l~~~~--------------~-~~~g~~hiaf~v~d 72 (134)
T cd08360 9 LFVPDVEAAEAFYRDRLGFRVSDRFK-GRGAFLRAAGGGDHHNLFLIKTP--------------A-PMAGFHHAAFEVGD 72 (134)
T ss_pred EEcCCHHHHHHHHHHhcCCEEEEEec-CcEEEEECCCCCCCcEEEEecCC--------------C-CCCcceEEEEEeCC
Confidence 57899999999999999999864322 223344443 1 234333210 0 02467899999999
Q ss_pred HHHHH---HHHHHCCCeeccCCccCCCC-cEEEEEeCCCCCEEEEeeec
Q 045980 77 VDAAY---KRAVENGAVPVSEPEDKEWG-QKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 77 ~~~~~---~~~~~~g~~~~~~~~~~~~g-~~~~~~~Dp~G~~iel~~~~ 121 (125)
++++. +++.++|+++...+...+++ .+.+||+||+||.|||....
T Consensus 73 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 73 IDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 88776 59999999987655544443 35689999999999998754
No 58
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=2.4e-17 Score=95.29 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=68.3
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCe--EEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQT--TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 78 (125)
|.|.|++++++||+ +|||++....+ .......++. .+.+... + .......++.+.++|++
T Consensus 8 l~v~d~~~s~~FY~-~lG~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~d~~ 69 (112)
T cd08344 8 LEVPDLEVARRFYE-AFGLDVREEGD--GLELRTAGNDHRWARLLEG--------------A-RKRLAYLSFGIFEDDFA 69 (112)
T ss_pred EecCCHHHHHHHHH-HhCCcEEeecC--ceEEEecCCCceEEEeecC--------------C-CCceeeEEEEeEhhhHH
Confidence 57899999999997 79999865432 2222222212 2222110 0 00223455667779999
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
++++++.++|++++..+ .+++.+.+||.||+||.|||...
T Consensus 70 ~~~~~l~~~Gi~~~~~~--~~~~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 70 AFARHLEAAGVALAAAP--PGADPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred HHHHHHHHcCCceecCC--CcCCCCEEEEECCCCCEEEEecC
Confidence 99999999999987665 34555789999999999999854
No 59
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.77 E-value=4e-17 Score=95.44 Aligned_cols=102 Identities=13% Similarity=-0.012 Sum_probs=71.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCe--EEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC---
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQT--TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA--- 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--- 75 (125)
|.|+|+++|++||+++|||++....+ ...+.+..++. .+.+... + ..+..|++|.++
T Consensus 8 l~v~Dl~~s~~FY~~~LG~~~~~~~~-~~~~~~~~~~~~~~~~l~~~--------------~---~~~~~~~~f~v~~~~ 69 (120)
T cd07252 8 VESSDLDAWRRFATDVLGLQVGDRPE-DGALYLRMDDRAWRIAVHPG--------------E---ADDLAYAGWEVADEA 69 (120)
T ss_pred EEeCCHHHHHHHHHhccCceeccCCC-CCeEEEEccCCceEEEEEeC--------------C---CCceeEEEEEECCHH
Confidence 57999999999999999998854322 12334444433 3333210 0 124568899885
Q ss_pred CHHHHHHHHHHCCCeeccCCcc---CCCCcEEEEEeCCCCCEEEEeee
Q 045980 76 DVDAAYKRAVENGAVPVSEPED---KEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~~---~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
|++++++++.++|+++...+.. ...+.+.+||+|||||.|||+.-
T Consensus 70 dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 70 ALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred HHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 5899999999999998755421 12233789999999999999864
No 60
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.76 E-value=3.1e-17 Score=96.10 Aligned_cols=108 Identities=15% Similarity=0.210 Sum_probs=73.8
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecC--C---ceeeEEee----CCeEEEEeeccccccccccCCCCCCCCCCCCCeEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDH--S---HRWGELES----GQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVC 71 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~--~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (125)
|.|+|++++++||+++|||++..... . ..+..+.. ++..+.+........ . ......+..|++
T Consensus 7 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~-----~~~~~~~~~hi~ 78 (126)
T cd08346 7 LITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGP---K-----GRRGPGQIHHIA 78 (126)
T ss_pred EEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCC---C-----CCCCCCcEEEEE
Confidence 57999999999999999999864321 1 12333322 344566654322110 0 111133567999
Q ss_pred EEEC---CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEe
Q 045980 72 FAYA---DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 72 ~~v~---d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~ 118 (125)
|.|+ +++++++++++.|+++...+.. ++.+.+||+||+||+|||+
T Consensus 79 f~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 79 FSVPSEASLDAWRERLRAAGVPVSGVVDH--FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEcCCHHHHHHHHHHHHHcCCcccceEee--cceEEEEEECCCCCEEEeC
Confidence 9997 5799999999999987654433 4568999999999999984
No 61
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=6.5e-17 Score=94.70 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=74.6
Q ss_pred CeecCHHHHHHHHHHh---cCCeEEeecCCceeeEEeeC--CeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC
Q 045980 1 IYVTDVAKSVAFYAKA---FDYTVRTLDHSHRWGELESG--QTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~---lg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (125)
|.|+|++++++||+++ ||+++..... ..++.+..+ +..+.+..... +. .+. ..+..|++|.|+
T Consensus 6 l~v~d~~~s~~FY~~~f~~lg~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-------~~--~~~--~~~~~hi~f~v~ 73 (123)
T cd07262 6 LGVNDLERARAFYDAVLAPLGIKRVMEDG-PGAVGYGKGGGGPDFWVTKPFD-------GE--PAT--AGNGTHVAFAAP 73 (123)
T ss_pred EecCcHHHHHHHHHHHHhhcCceEEeecC-CceeEeccCCCCceEEEecccc-------CC--CCC--CCCceEEEEECC
Confidence 5789999999999999 6898765431 234444443 44565543211 00 011 224569999997
Q ss_pred C---HHHHHHHHHHCCCeeccCCccCCC---CcEEEEEeCCCCCEEEEee
Q 045980 76 D---VDAAYKRAVENGAVPVSEPEDKEW---GQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 76 d---~~~~~~~~~~~g~~~~~~~~~~~~---g~~~~~~~Dp~G~~iel~~ 119 (125)
+ ++++++++.++|+++..+|...++ +.+.+||+||+||.|||+.
T Consensus 74 ~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~~ 123 (123)
T cd07262 74 SREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAVC 123 (123)
T ss_pred CHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEeC
Confidence 6 788999999999998877765543 3357899999999999973
No 62
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.76 E-value=3.7e-17 Score=99.40 Aligned_cols=109 Identities=20% Similarity=0.142 Sum_probs=72.5
Q ss_pred CeecCHHHHHHHHHHhcCCeEEee--c---CCceeeEEeeCCe--EEEEeeccccccccccCCCCCCCCCCCCCeEEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTL--D---HSHRWGELESGQT--TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFA 73 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~--~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (125)
|.|+|+++|++||+++|||++... . .....+++..++. .+.... ......+ +.+..|++|.
T Consensus 7 l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~l~~~~---~~g~~Hiaf~ 74 (153)
T cd07257 7 LEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHT---------LALAQGP---ESGVHHAAFE 74 (153)
T ss_pred EecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchH---------HHHhcCC---CCceeEEEEE
Confidence 579999999999999999998532 1 1112333333211 000000 0000111 3467899999
Q ss_pred ECCHHHHH---HHHHHCCCeeccCCccCCCC-cEEEEEeCCCCCEEEEeeec
Q 045980 74 YADVDAAY---KRAVENGAVPVSEPEDKEWG-QKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 74 v~d~~~~~---~~~~~~g~~~~~~~~~~~~g-~~~~~~~Dp~G~~iel~~~~ 121 (125)
|+|++++. ++|+++|+++...+.....| ...+|++||+||.|||+...
T Consensus 75 v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 75 VHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred cCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 99999986 99999999987666544433 35679999999999998654
No 63
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.76 E-value=3.9e-17 Score=95.39 Aligned_cols=103 Identities=19% Similarity=0.144 Sum_probs=72.6
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeC--C--eEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE--
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESG--Q--TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY-- 74 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-- 74 (125)
|.|+|++++.+||+++|||++....+ .++.+... . ..+.+.. .+ ..+..|++|.|
T Consensus 10 l~v~d~~~~~~Fy~~~lG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--------------~~---~~~~~hi~~~v~~ 70 (121)
T cd07266 10 LRVTDLEKSREFYVDVLGLVETEEDD--DRIYLRGLEEFIHHSLVLTK--------------AP---VAGLGHIAFRVRS 70 (121)
T ss_pred EEcCCHHHHHHHHHhccCCEEeccCC--CeEEEEecCCCceEEEEEee--------------CC---CCceeEEEEECCC
Confidence 57899999999999999999865433 23334321 1 1222211 00 23567899988
Q ss_pred -CCHHHHHHHHHHCCCeeccCCcc-CCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 75 -ADVDAAYKRAVENGAVPVSEPED-KEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 75 -~d~~~~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
+|+++++++++++|+++...|.. .+++.+.+|+.||+||.||++...+
T Consensus 71 ~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~~ 120 (121)
T cd07266 71 EEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEMD 120 (121)
T ss_pred HHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEeccc
Confidence 58999999999999998655433 3333479999999999999997653
No 64
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.75 E-value=6.3e-17 Score=97.50 Aligned_cols=104 Identities=23% Similarity=0.361 Sum_probs=72.6
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCC--eEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQ--TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 78 (125)
|.|+|++++++||+++|||++..... .....+..++ ..+.+.. .+ ..+..|++|.|+|++
T Consensus 10 i~V~Dle~s~~FY~~~LG~~~~~~~~-~~~~~l~~~~~~~~~~l~~--------------~~---~~~~~hiaf~v~d~~ 71 (144)
T cd07239 10 LNSPDVDKTVAFYEDVLGFRVSDWLG-DQMAFLRCNSDHHSIAIAR--------------GP---HPSLNHVAFEMPSID 71 (144)
T ss_pred EECCCHHHHHHHHHhcCCCEEEEeeC-CeEEEEECCCCcceEEEcc--------------CC---CCceEEEEEECCCHH
Confidence 57899999999999999999853322 1233344332 2233211 00 235678999998887
Q ss_pred HHH---HHHHHCCCeeccCCccC-CCCcEEEEEeCCCCCEEEEeeecc
Q 045980 79 AAY---KRAVENGAVPVSEPEDK-EWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 79 ~~~---~~~~~~g~~~~~~~~~~-~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
++. +++.++|+++...+... +++.+.+||+||+||.|||++...
T Consensus 72 ~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 72 EVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred HHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 775 89999999987665432 334467899999999999988654
No 65
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=8.7e-17 Score=96.54 Aligned_cols=106 Identities=18% Similarity=0.124 Sum_probs=73.4
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCC-eEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCH--
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQ-TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADV-- 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-- 77 (125)
|.|+|++++.+||+++|||++....+ ...+++...+ ........ .+. ...+..|++|.|+|.
T Consensus 5 l~V~Dle~s~~Fy~~vLG~~~~~~~~-~~~~~l~~~~~~~~h~~~~-------------~~~-~~~gl~Hiaf~v~~~~~ 69 (141)
T cd07258 5 IGSENFEASRDSLVEDFGFRVSDLIE-DRIVFMRCHPNPFHHTFAV-------------GPA-SSSHFHHVNFMVTDIDD 69 (141)
T ss_pred EecCCHHHHHHHHHhcCCCEeeeeeC-CEEEEEEcCCCCCcceeee-------------ccC-CCCceEEEEEECCCHHH
Confidence 57999999999999999999754322 2334443321 11111100 000 135788999999764
Q ss_pred -HHHHHHHHHCCCeeccCCccCC-CCcEEEEEeCCCCCEEEEeeec
Q 045980 78 -DAAYKRAVENGAVPVSEPEDKE-WGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 78 -~~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+++++++.++|+++...|...+ .+.+.+||+||+|+.|||....
T Consensus 70 v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 70 IGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred HHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 5779999999999877766543 4558899999999999998754
No 66
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.74 E-value=1.6e-16 Score=92.35 Aligned_cols=109 Identities=21% Similarity=0.279 Sum_probs=79.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec--CCceeeEEeeCCeEE-EEeeccccccccccCCCCCCCCCCCCCeEEEEEECCH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD--HSHRWGELESGQTTI-AFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADV 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 77 (125)
|.|+|++++.+||.++|||+..... +...+..+..++... -... .....+ ++.....+.|.|+|+
T Consensus 15 i~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~~~~gG~l~----------~~~~~~--p~~~~~~iy~~v~di 82 (127)
T COG3324 15 LPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADGAGAGGGLM----------ARPGSP--PGGGGWVIYFAVDDI 82 (127)
T ss_pred eecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCCccccceec----------cCCcCC--CCCCCEEEEEecCCh
Confidence 5799999999999999999986542 223444443333110 0000 000011 125677899999999
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
++..+|+.++|++++.++...+.+.+.+.+.||+||.|.|+++.
T Consensus 83 d~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 83 DATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred HHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 99999999999999999988874449999999999999998753
No 67
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.74 E-value=1.3e-16 Score=97.18 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=71.7
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecC-------CceeeEEeeCC--eEEEEeeccccccccccCCCCCCCCCCCCCeEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDH-------SHRWGELESGQ--TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVC 71 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (125)
|.|+|++++++||+++|||++..... ....+.+..++ ..+.+.. .+. ..+..|++
T Consensus 15 l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~--------------~~~--~~g~~Hia 78 (154)
T cd07237 15 LATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE--------------GPG--PKRIHHLM 78 (154)
T ss_pred EEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc--------------CCC--CceeEEEE
Confidence 57999999999999999999753211 11223333321 1122211 010 24677999
Q ss_pred EEECCHH---HHHHHHHHCCCeeccCCccCCC-CcEEEEEeCCCCCEEEEeee
Q 045980 72 FAYADVD---AAYKRAVENGAVPVSEPEDKEW-GQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 72 ~~v~d~~---~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~Dp~G~~iel~~~ 120 (125)
|.|+|++ +++++++++|+++..++...++ +.+++|++||+||.|||...
T Consensus 79 f~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 79 LEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 9997755 6899999999998876655443 55889999999999999865
No 68
>PLN02300 lactoylglutathione lyase
Probab=99.74 E-value=1.6e-16 Score=105.51 Aligned_cols=114 Identities=15% Similarity=0.152 Sum_probs=77.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec--CCc--eeeEEeeC--CeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD--HSH--RWGELESG--QTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY 74 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~--~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 74 (125)
|.|+|++++++||+++|||++.... +.. ..+.+..+ ...+.+..... .+....+ .+.+..|++|.|
T Consensus 30 l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~------~~~~~~~--~~~g~~hia~~v 101 (286)
T PLN02300 30 YRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYN------YGVDKYD--IGTGFGHFGIAV 101 (286)
T ss_pred EEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEecc------CCCCccc--cCCCccEEEEEe
Confidence 5799999999999999999985421 111 12333332 22222211111 0000011 134667999999
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCC-cEEEEEeCCCCCEEEEeeecc
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWG-QKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g-~~~~~~~Dp~G~~iel~~~~~ 122 (125)
+|++++++++.++|+++...+...+++ .+.+||+||+||.|||+++..
T Consensus 102 ~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 150 (286)
T PLN02300 102 EDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGP 150 (286)
T ss_pred CCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Confidence 999999999999999988777665554 457899999999999998754
No 69
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.73 E-value=1.8e-16 Score=97.63 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=71.2
Q ss_pred CeecCHHHHHHHHHHhcCCeEEee--cC-C-ceeeEEeeCCe--EEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTL--DH-S-HRWGELESGQT--TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY 74 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~--~~-~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 74 (125)
|.|+|++++++||+++|||++... .+ . .....+...+. .+.+... . .. ...+..|++|.|
T Consensus 12 l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~---------~---~~--~~~~~~hiaf~v 77 (166)
T cd09014 12 LLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRD---------P---AG--ARGRLHHLAYAL 77 (166)
T ss_pred EEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecC---------C---CC--CCCCceEEEEEC
Confidence 579999999999999999987532 11 1 11233333221 2222110 0 00 123567999999
Q ss_pred CC---HHHHHHHHHHCCCeeccCCccCCCCc-EEEEEeCCCCCEEEEeee
Q 045980 75 AD---VDAAYKRAVENGAVPVSEPEDKEWGQ-KVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 75 ~d---~~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~~~Dp~G~~iel~~~ 120 (125)
+| ++++++++.+.|++++..|....++. +.+|++||+||+|||+..
T Consensus 78 ~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 78 DTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 75 55788999999999876666555433 468999999999999886
No 70
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.70 E-value=1.1e-16 Score=93.80 Aligned_cols=112 Identities=25% Similarity=0.397 Sum_probs=72.8
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecC------CceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDH------SHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY 74 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 74 (125)
|.|+|++++++||+++|||++..... ......+..+...+.+.......... .. ...+ .....|+++.+
T Consensus 7 i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~---~~~~~~i~~~~ 81 (128)
T PF00903_consen 7 IRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRA-SG-HSFP---EHGGHHIAFLA 81 (128)
T ss_dssp EEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSS-EE-EHHH---SHTSEEEEEEE
T ss_pred EEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccc-cc-cccc---cccceeEEEEe
Confidence 57999999999999999999865422 12234445555555544322211100 00 0000 01345666665
Q ss_pred ---CCHHHHHHHHHHCCCeeccCCccCCCCcE-EEEEeCCCCCEEEE
Q 045980 75 ---ADVDAAYKRAVENGAVPVSEPEDKEWGQK-VGYVRDINGIVVRM 117 (125)
Q Consensus 75 ---~d~~~~~~~~~~~g~~~~~~~~~~~~g~~-~~~~~Dp~G~~iel 117 (125)
+|+++++++|++.|+++..++....++.. .+|++||+||.|||
T Consensus 82 ~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 82 FDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp SSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred ccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 67888999999999999888776555544 45799999999997
No 71
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.69 E-value=1.3e-15 Score=93.30 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=66.5
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec-C--Ccee-eEEeeCCe--EEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD-H--SHRW-GELESGQT--TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY 74 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~-~--~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 74 (125)
|.|+|++++++||+++|||++.... . .... ..+..++. .+.+. .. .+.+..|++|.|
T Consensus 9 l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~--------------~~---~~~~~~Hiaf~v 71 (161)
T cd07256 9 LRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALT--------------GG---NGPRLHHVAFWV 71 (161)
T ss_pred EecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEe--------------cC---CCCceeEEEEEc
Confidence 5799999999999999999875321 1 1111 22222111 11110 00 123567999999
Q ss_pred CC---HHHHHHHHHHCCCee--ccCCccCC-CCcEEEEEeCCCCCEEEEeee
Q 045980 75 AD---VDAAYKRAVENGAVP--VSEPEDKE-WGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 75 ~d---~~~~~~~~~~~g~~~--~~~~~~~~-~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+| +++++++|+++|+.+ ...+.... ++.+.+||+||+||.||+++.
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeec
Confidence 75 778899999999863 23333322 344689999999999999854
No 72
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.3e-15 Score=90.19 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=76.7
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecC-----------------------CceeeEEeeCCeEEEEeeccccccccccCCC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDH-----------------------SHRWGELESGQTTIAFTRLHQHETDELTGSV 57 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (125)
++++|+.+++.||++++|+.+..... +...+++......+.+........+. ....
T Consensus 28 ~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gtes~~-~~~~ 106 (170)
T KOG2944|consen 28 LRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTESPP-DQAY 106 (170)
T ss_pred eecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCCCCc-chhh
Confidence 46889999999999999998752110 11112233333444443222222211 1112
Q ss_pred CCCCCCCCCCeEEEEEECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 58 QTPSSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 58 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
..+...+.+..||||+|+|++++++++++.|++....+..... -..+++.||||++|||..+
T Consensus 107 ~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~-K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 107 LNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKM-KPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred cCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccc-cceeEEECCCCCeEEEeec
Confidence 2222224588899999999999999999999997666655433 2689999999999999875
No 73
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=7.3e-15 Score=86.43 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=63.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec--CC-----------cee--eEEee----CCeEEEEeeccccccccccCCCCCCC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD--HS-----------HRW--GELES----GQTTIAFTRLHQHETDELTGSVQTPS 61 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~--~~-----------~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (125)
|.|+|+++|++||+++|||++.... +. ..+ +.+.. .+..+.+...... ...+.
T Consensus 8 irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~--------~~~~~ 79 (127)
T cd08358 8 FKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGI--------GDYEL 79 (127)
T ss_pred EEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCC--------CCCCC
Confidence 5799999999999999999974321 11 111 22322 2223444321110 01111
Q ss_pred CCCCCCeEEEEEECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 62 SPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 62 ~~~~~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
+.+ +++|.|++. ++.++++++|+++...+. + .++++||||+.|||+.
T Consensus 80 --g~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 80 --GND--FLGITIHSK-QAVSNAKKHNWPVTEVED----G--VYEVKAPGGYKFYLID 126 (127)
T ss_pred --CCC--EEEEEEECH-HHHHHHHHCCCceecCCC----C--EEEEECCCCCEEEEec
Confidence 333 566666666 556999999998876543 2 7899999999999974
No 74
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.66 E-value=2.5e-15 Score=85.74 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=79.4
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEee-CCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE---CC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELES-GQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY---AD 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~d 76 (125)
|.|+|++++++||. .|||+............+-. ++..+++....... .... .+......+.-+.+++.+ ++
T Consensus 9 LPVkDL~~S~~Fy~-alGfk~Npq~sde~a~~mi~~~ni~vMLL~~~~fq--~F~~-~~i~dt~~s~evli~ls~~s~ee 84 (133)
T COG3607 9 LPVKDLEASKAFYT-ALGFKFNPQFSDEDAACMIISDNIFVMLLEEARFQ--TFTK-RQIADTTKSREVLISLSAGSREE 84 (133)
T ss_pred cchhhHHHHHHHHH-HhCcccCCCcccccceeEEEeccEEEEEeccHHhh--hhcc-cccccccCCceEEEEeccCcHHH
Confidence 57999999999999 59999865533334444444 44445554322222 1111 112222255667888887 57
Q ss_pred HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 77 VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
++++.++++++|+++..++.... +.+...|.|||||.||+.--.
T Consensus 85 vd~~v~ka~eaGGk~~~~~~d~g-fMYg~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 85 VDELVDKALEAGGKPANEPQDEG-FMYGRSFQDPDGHVWEFLWMD 128 (133)
T ss_pred HHHHHHHHHHcCCCCCCCccccc-cccceeeeCCCCCeEEEEEeC
Confidence 89999999999999988877665 348889999999999997543
No 75
>PRK10148 hypothetical protein; Provisional
Probab=99.65 E-value=1.6e-14 Score=87.20 Aligned_cols=104 Identities=12% Similarity=0.181 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHhcCCeEEee------------------------cCCceeeEEeeCCeEEEEeeccccccccccCCCCCC
Q 045980 5 DVAKSVAFYAKAFDYTVRTL------------------------DHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTP 60 (125)
Q Consensus 5 d~~~a~~FY~~~lg~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (125)
|.++|++||+++||.++... .+..+|+.+..++..+++..... +. +
T Consensus 12 ~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~-------~~---~ 81 (147)
T PRK10148 12 NCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIP-------SG---K 81 (147)
T ss_pred CHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCC-------Cc---C
Confidence 89999999999999987421 12345788999988888765211 10 1
Q ss_pred CCCCCCCeEEEEEECCHHH---HHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 61 SSPQRQPIEVCFAYADVDA---AYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 61 ~~~~~~~~~~~~~v~d~~~---~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
. ....+++++.++|.++ ++++| +.|++++.++...+||.+.+.|+||.|+.|.|....
T Consensus 82 ~--~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~~ 142 (147)
T PRK10148 82 A--HYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVVK 142 (147)
T ss_pred C--CCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEecC
Confidence 1 2246788888888776 55555 689999999999999999999999999999998753
No 76
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.64 E-value=6.2e-15 Score=97.85 Aligned_cols=103 Identities=15% Similarity=0.031 Sum_probs=71.6
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeC--CeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECC--
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESG--QTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYAD-- 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d-- 76 (125)
|.|+|+++|++||+++|||++....+. ....+..+ +..+.+.... ..+..+++|.|++
T Consensus 9 l~V~Dl~~s~~FY~~~LGl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-----------------~~~~~~~~f~V~~~~ 70 (286)
T TIGR03213 9 IGVSDVDAWREFATEVLGMMVASEGEN-DALYLRLDSRAHRIAVHPGE-----------------SDDLAYAGWEVADEA 70 (286)
T ss_pred EEeCCHHHHHHHHHhccCcccccCCCC-ceEEEEcCCCceEEEEEECC-----------------cCCeeeEeeeeCCHH
Confidence 579999999999999999987543221 12233433 2234332210 1134579999988
Q ss_pred -HHHHHHHHHHCCCeeccCCc---cCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 77 -VDAAYKRAVENGAVPVSEPE---DKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 77 -~~~~~~~~~~~g~~~~~~~~---~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
++++.++|.++|+++...+. ...++...++|.||+||.|||+...
T Consensus 71 ~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~ 119 (286)
T TIGR03213 71 GLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGA 119 (286)
T ss_pred HHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcc
Confidence 88999999999998765443 2233457899999999999998743
No 77
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.63 E-value=1.1e-14 Score=97.34 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=72.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEee-C---CeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC-
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELES-G---QTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA- 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 75 (125)
|.|+|++++++||+++|||++....+. .+.+.. + ...+.+.. .+ ..+..|++|.|+
T Consensus 10 l~V~Dle~s~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~~~~~l~~--------------~~---~~g~~hiaf~v~~ 70 (303)
T TIGR03211 10 LRVLDLEESLKHYTDVLGLEETGRDGQ--RVYLKAWDEWDHYSVILTE--------------AD---TAGLDHMAFKVES 70 (303)
T ss_pred EEeCCHHHHHHHHHHhcCCEEeeecCc--eEEEEeccccccceEeecc--------------CC---CCceeEEEEEeCC
Confidence 579999999999999999998654332 222221 1 11221110 00 235679999996
Q ss_pred --CHHHHHHHHHHCCCeeccCCc--cCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 76 --DVDAAYKRAVENGAVPVSEPE--DKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 76 --d~~~~~~~~~~~g~~~~~~~~--~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
|+++++++++++|+++...+. ...++ +.+||+||+||.|||++..+
T Consensus 71 ~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g-~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 71 EADLERLVKRLEAYGVGTGWIPAGELPGVG-RRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred HHHHHHHHHHHHHcCCCeeeccCCCCCCcc-eEEEEECCCCCEEEEEEccc
Confidence 789999999999999865554 23345 78999999999999998654
No 78
>PLN02300 lactoylglutathione lyase
Probab=99.63 E-value=2.7e-14 Score=94.85 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=77.1
Q ss_pred CeecCHHHHHHHHHHhcCCeEEee--cCCcee--eEEeeCC----eEEEEeeccccccccccCCCCCCCCCCCCCeEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTL--DHSHRW--GELESGQ----TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF 72 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~--~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
|.|+|++++.+||+++|||++... .+...+ +.+..++ ..+.+... .+... . ..+.+..|++|
T Consensus 160 l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~--------~~~~~-~-~~g~~~~~i~~ 229 (286)
T PLN02300 160 LRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYN--------YGVTE-Y-TKGNAYAQIAI 229 (286)
T ss_pred EEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeec--------CCCCc-c-ccCCceeEEEE
Confidence 578999999999999999998632 122222 2222211 12222110 01001 1 11446679999
Q ss_pred EECCHHHHHHHHHHCCCeeccCCccCCC-CcEEEEEeCCCCCEEEEeeecc
Q 045980 73 AYADVDAAYKRAVENGAVPVSEPEDKEW-GQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 73 ~v~d~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
.|+|++++++++.++|++++.+|...++ +.+.++|+||+||.++|.+...
T Consensus 230 ~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~ 280 (286)
T PLN02300 230 GTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNID 280 (286)
T ss_pred ecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccch
Confidence 9999999999999999999988876664 3478899999999999998653
No 79
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.63 E-value=1.9e-14 Score=95.55 Aligned_cols=102 Identities=21% Similarity=0.287 Sum_probs=68.5
Q ss_pred CeecCHHHHHHHHHHhcCCeEEee---cCC-c---eeeEEeeCCe--EEEEeeccccccccccCCCCCCCCCCCCCeEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTL---DHS-H---RWGELESGQT--TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVC 71 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~---~~~-~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (125)
|.|+|++++.+||+++|||++... ... . ..+++..++. .+.+.. .+ ...+..|++
T Consensus 148 l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~--------------~~--~~~~~~Hia 211 (286)
T TIGR03213 148 LRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAA--------------GP--SEKRLNHLM 211 (286)
T ss_pred EEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEec--------------CC--CCCceEEEE
Confidence 578999999999999999997532 111 1 1233333221 122211 01 134677999
Q ss_pred EEECCHHH---HHHHHHHCCCeeccCCcc-CCCCcEEEEEeCCCCCEEEEee
Q 045980 72 FAYADVDA---AYKRAVENGAVPVSEPED-KEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 72 ~~v~d~~~---~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
|.|+|+++ ++++++++|+ +...+.. ..++..++|++||+||+||+.+
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 99988777 7999999999 4434433 3345589999999999999976
No 80
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.63 E-value=1.4e-14 Score=96.83 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=67.7
Q ss_pred CeecCHHHHHHHHHHhcCCeEEee---cCCc--eeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTL---DHSH--RWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (125)
|.|+|++++.+||+++|||++... .... ...++..++.. . .......+. .+...|++|.|+
T Consensus 151 l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~--~g~~~Hiaf~v~ 216 (303)
T TIGR03211 151 LYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKA---------H---DIAFVGDPE--PGKLHHVSFFLD 216 (303)
T ss_pred EEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCC---------c---ccceecCCC--CCceEEEEEEcC
Confidence 579999999999999999997422 1111 11122211100 0 000000111 223679999998
Q ss_pred C---HHHHHHHHHHCCCeeccCCccCCC-CcEEEEEeCCCCCEEEEee
Q 045980 76 D---VDAAYKRAVENGAVPVSEPEDKEW-GQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 76 d---~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~Dp~G~~iel~~ 119 (125)
| ++++++++.++|+++..+|...+. +.+.+||+||+||.|||+.
T Consensus 217 ~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 217 SWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred CHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 6 555788999999998777765442 2379999999999999973
No 81
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.63 E-value=1.6e-14 Score=81.29 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=79.4
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHHHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAA 80 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 80 (125)
|.|.|++++++||+++||++.-++. ..++.+..-+..+..+..+.... ...|....+.- ...+.-+.+.++|+.++
T Consensus 10 ~pV~Dl~~tr~FYgevlG~~~GRst--d~wvdfDfyGHQ~v~Hl~~q~~~-~~~g~V~~~~v-~~pHfGvVl~~edW~al 85 (138)
T COG3565 10 IPVNDLDETRRFYGEVLGCKEGRST--DTWVDFDFYGHQVVAHLTPQPDS-QGSGKVDGHGV-PPPHFGVVLPVEDWFAL 85 (138)
T ss_pred eeccccHHHHhhhhhhccccccccc--ceEEEeeecccEEEEEecCCccc-ccCcccCCCCC-CCccceEEEEHHHHHHH
Confidence 5789999999999999999987654 47777777444444332222111 01111111100 12344567788999999
Q ss_pred HHHHHHCCCeeccCCccCCC----CcEEEEEeCCCCCEEEEeeec
Q 045980 81 YKRAVENGAVPVSEPEDKEW----GQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~~~----g~~~~~~~Dp~G~~iel~~~~ 121 (125)
.+|++++|.....+|.-..- -++.+++.||.||.+|+-...
T Consensus 86 aerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR 130 (138)
T COG3565 86 AERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFR 130 (138)
T ss_pred HHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeeccc
Confidence 99999999988877765333 247899999999999987544
No 82
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.61 E-value=2.1e-14 Score=95.59 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=71.5
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeC--C--eEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC-
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESG--Q--TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA- 75 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 75 (125)
|.|+|++++++||+++|||++....+ ..+.+... + ..+.+.. .+ ..+..|++|.|+
T Consensus 10 l~v~Dl~~s~~FY~~vLGl~~~~~~~--~~~~~~~~~~~~~~~l~l~~--------------~~---~~~~~hiaf~v~~ 70 (294)
T TIGR02295 10 LRVTDLDKSREFYVDLLGFRETESDK--EYIYLRGIEEFQHHSLVLTK--------------AP---SAALSYIGFRVSK 70 (294)
T ss_pred EEeCCHHHHHHHHHHccCCEEEEecC--CeEEEeccCcCCceEEEeee--------------CC---CcCccEEEEEeCC
Confidence 57999999999999999999865433 23333321 1 1222211 01 235678999996
Q ss_pred --CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 76 --DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 76 --d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
|+++++++++++|+++...+. +++.+.+||+||+||.|||+...+
T Consensus 71 ~~dl~~~~~~l~~~Gv~v~~~~~--~~~~~~~~~~DPdG~~iEl~~~~~ 117 (294)
T TIGR02295 71 EEDLDKAADFFQKLGHPVRLVRD--GGQPEALRVEDPFGYPIEFYFEME 117 (294)
T ss_pred HHHHHHHHHHHHhcCCcEEeecC--CCCceEEEEECCCCCEEEEEEchh
Confidence 789999999999998765443 234489999999999999997543
No 83
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.56 E-value=1.4e-13 Score=91.70 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=66.8
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec--CCce--eeEEeeCCe--EEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD--HSHR--WGELESGQT--TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY 74 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~--~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 74 (125)
|.|+|+++|.+||+++|||++.... +... ...+..++. .+.+. +. ++.+..|++|.|
T Consensus 142 l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~-~~~~~~Hiaf~v 204 (294)
T TIGR02295 142 VFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALT----------------NG-NGPRLHHIAYWV 204 (294)
T ss_pred EEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEee----------------cC-CCCceeeEEEEc
Confidence 5789999999999999999975321 1111 111111110 11110 00 134678999999
Q ss_pred CC---HHHHHHHHHHCCCe--eccCCccCCC-CcEEEEEeCCCCCEEEEeee
Q 045980 75 AD---VDAAYKRAVENGAV--PVSEPEDKEW-GQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 75 ~d---~~~~~~~~~~~g~~--~~~~~~~~~~-g~~~~~~~Dp~G~~iel~~~ 120 (125)
+| +++++++++++|++ +...|..... +...+|++||+||.|||++.
T Consensus 205 ~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 205 HDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred CCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 88 55568999999987 5444544333 23679999999999999864
No 84
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.54 E-value=2.4e-13 Score=87.34 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=80.4
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCe-EEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC---C
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQT-TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA---D 76 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---d 76 (125)
|.|+|++++..||++++|+++....+ .-+.+..++. .+.+...+...+ +.....+.+|++|-++ |
T Consensus 16 L~vrdL~~~~~FY~~ilGL~v~~~~~--~~v~L~vgg~~LL~L~q~~~a~~---------~~~~~aGLyH~AfLlP~r~~ 84 (265)
T COG2514 16 LNVRDLDSMTSFYQEILGLQVLEETD--GSVTLGVGGTPLLTLEQFPDARR---------PPPRAAGLYHTAFLLPTRED 84 (265)
T ss_pred EEeccHHHHHHHHHHhhCCeeeeccC--ceEEEeeCCEEEEEEEeCCCCCC---------CCccccceeeeeeecCCHHH
Confidence 57899999999999999999976543 4467777776 444444332221 1112568899999885 5
Q ss_pred HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeeccCC
Q 045980 77 VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQAS 124 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~~~ 124 (125)
+..+..++.+.|..+. ........ ..+|+.||+||-||++...+..
T Consensus 85 L~~~l~hl~~~~~~l~-Ga~DH~vS-EAlYl~DPEGNGIEiYaDrp~~ 130 (265)
T COG2514 85 LARVLNHLAEEGIPLV-GASDHLVS-EALYLEDPEGNGIEIYADRPRS 130 (265)
T ss_pred HHHHHHHHHhcCCccc-ccCcchhh-eeeeecCCCCCeEEEEecCChH
Confidence 7778888899998876 33333333 7899999999999999987643
No 85
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.36 E-value=5.7e-12 Score=72.44 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=61.9
Q ss_pred CeecCHHHHHHHHHHhcCCeEEee----cCCceeeEEeeCC--eEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTL----DHSHRWGELESGQ--TTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAY 74 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 74 (125)
|.|+|+++|++||+++||+..... ........+..++ ..+++........ . ... .+.+..||+|.|
T Consensus 5 i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~--~---~~~---~~~gi~Hia~~v 76 (109)
T PF13669_consen 5 IVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDS--P---LDR---GGGGIHHIAFEV 76 (109)
T ss_dssp EEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTC--H---HHH---TSSEEEEEEEEE
T ss_pred EEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCc--c---ccc---CCCCEEEEEEEe
Confidence 579999999999999999987432 1223345666665 4677665332110 0 000 256889999999
Q ss_pred CCHHHHHHHHHHCCCeeccCCc
Q 045980 75 ADVDAAYKRAVENGAVPVSEPE 96 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~ 96 (125)
+|++++.+++.++|++++..+.
T Consensus 77 ~D~d~~~~~l~~~G~~~~~~~~ 98 (109)
T PF13669_consen 77 DDLDAAIARLEAQGFRVLDEGP 98 (109)
T ss_dssp SHHHHHHHHHHHTTECEEECEE
T ss_pred CCHHHHHHHHHHCCCEEcccCc
Confidence 9999999999999999887653
No 86
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=99.34 E-value=1e-11 Score=83.07 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=69.4
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC---CH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA---DV 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---d~ 77 (125)
|.|+|+++|.+||+++|+++. +..+.. +.+ ++..+.+...+. +.....-+.+++.++ ++
T Consensus 253 LpV~DL~rS~~FYt~LF~~n~-Fsde~a--~cm--~dtI~vMllt~~-------------D~~~~~evLl~Ls~~Sre~V 314 (357)
T PRK01037 253 LEVQDLRRAKKFYSKMFGLEC-WDGDKL--FLL--GKTSLYLQQTKA-------------EKKNRGTTTLSLELECEHDF 314 (357)
T ss_pred eeeCCHHHHHHHHHHHhCCCC-CCCCcc--ccc--cCcEEEEEecCC-------------CCCCcceEEEEeccCCHHHH
Confidence 579999999999999999986 544322 222 444444332221 001335577888874 68
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
|++.+++.++|++...++...++ .-.|.|||||.||+.-.
T Consensus 315 D~lv~~A~aaGG~~~~~~~D~Gf---~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 315 VRFLRRWEMLGGELGEQADGHFP---LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred HHHHHHHHHcCCCCCCCcccccC---cceeECCCCCEEEEEEE
Confidence 89999999999987666665544 66799999999999753
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.25 E-value=3e-10 Score=77.66 Aligned_cols=93 Identities=24% Similarity=0.363 Sum_probs=65.8
Q ss_pred CeecCHHHHHHHHHHhcCCeEEee---cCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTL---DHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADV 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 77 (125)
|.|+|++++++||++.|||+.... ........+..++..+.+....... ....... ...+.+..+++|.|+|+
T Consensus 8 ~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~~~~~~~G~~~l~L~~~~~~~--s~~~~~~--~~hg~gv~~iaf~V~Dv 83 (353)
T TIGR01263 8 FYVGDAKQAAYYYFTRFGFEKVAKETGHREKASHVLRQGQINFVLTAPYSSD--SPAADFA--AKHGDGVKDVAFRVDDA 83 (353)
T ss_pred EEeCCHHHHHHHHHHhcCCcEEEEeecCCceeEEEEEeCCEEEEEecCCCCC--chHHHHH--HhCCCceEEEEEEECCH
Confidence 579999999999999999998654 2333445566778888877533211 0000000 01145778999999999
Q ss_pred HHHHHHHHHCCCeeccCCcc
Q 045980 78 DAAYKRAVENGAVPVSEPED 97 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~ 97 (125)
+++++++.+.|+.++.+|..
T Consensus 84 ~~a~~~l~~~Ga~~v~~p~~ 103 (353)
T TIGR01263 84 AAAFEAAVERGAEPVQAPVE 103 (353)
T ss_pred HHHHHHHHHCCCEeccCCcc
Confidence 99999999999999877654
No 88
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.19 E-value=8e-11 Score=74.05 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=60.7
Q ss_pred Ceec--CHHHHHHHHHHhcCCeEEeecC--C----ceeeEEee--CCeEEEEeeccccccccccCCCCCCCCCCCCCeEE
Q 045980 1 IYVT--DVAKSVAFYAKAFDYTVRTLDH--S----HRWGELES--GQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEV 70 (125)
Q Consensus 1 i~v~--d~~~a~~FY~~~lg~~~~~~~~--~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (125)
+.|. |++++++||+++|||+.....+ . .....+.. ++..+.+............... .....+.+..||
T Consensus 9 i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~f-l~~~~G~Gv~HI 87 (191)
T cd07250 9 GNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEF-LEYYGGAGVQHI 87 (191)
T ss_pred eecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHH-HHHhCCCceeEE
Confidence 4677 9999999999999999754321 1 11223333 3455666542221000000000 011125678899
Q ss_pred EEEECCHHHHHHHHHHCCCeeccCCcc
Q 045980 71 CFAYADVDAAYKRAVENGAVPVSEPED 97 (125)
Q Consensus 71 ~~~v~d~~~~~~~~~~~g~~~~~~~~~ 97 (125)
+|.|+|+++++++++++|++++..|..
T Consensus 88 Af~vdDI~~~~~~L~~~Gv~~l~~P~~ 114 (191)
T cd07250 88 ALATDDIFATVAALRARGVEFLPIPDN 114 (191)
T ss_pred EEECCCHHHHHHHHHHcCCeeccCchh
Confidence 999999999999999999999887754
No 89
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.16 E-value=1.2e-10 Score=68.08 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=64.6
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCcee-----eEEee-CCe-EEEEeecc----ccccccccCCCCCCCCCC-CCCe
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRW-----GELES-GQT-TIAFTRLH----QHETDELTGSVQTPSSPQ-RQPI 68 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~-----~~~~~-~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~ 68 (125)
|.|+|++++.+||+++||++.......... ..+.. ... ........ .... ............. .+..
T Consensus 8 l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 86 (138)
T COG0346 8 LAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGT-GFVGDVALGVPGGDLGLG 86 (138)
T ss_pred EeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeeccccccccc-ccccceEEeecCchhccC
Confidence 579999999999999999999754322111 11111 100 00000000 0000 0000000000001 2356
Q ss_pred EEEEEECC---HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 69 EVCFAYAD---VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 69 ~~~~~v~d---~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
++++.+++ ...........|..+..... ..++ ..+|++||||++||+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~-~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 87 HLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGG-VHVYFRDPDGILIELAT 138 (138)
T ss_pred ceeEecccccccceEEEeeCCCCCEEEeecC-CCcc-eEEEEECCCCcEEEeeC
Confidence 88999987 66666667777877655443 4445 49999999999999974
No 90
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=98.96 E-value=9.6e-08 Score=55.49 Aligned_cols=92 Identities=20% Similarity=0.352 Sum_probs=61.1
Q ss_pred cCHHHHHHHHHHhcCCe-EEee---c-------CCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEE
Q 045980 4 TDVAKSVAFYAKAFDYT-VRTL---D-------HSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCF 72 (125)
Q Consensus 4 ~d~~~a~~FY~~~lg~~-~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
.+.++|.+||.++||-. +... + +...++.+..++..+++..... ..+ ....++|++
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~----------~~~---~~~~~sl~i 77 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGP----------DFP---FGNNISLCI 77 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEEST----------S-------TTEEEEE
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCC----------CCC---CCCcEEEEE
Confidence 47899999999999853 3221 1 1346788999999988775431 011 235578899
Q ss_pred EECCH---HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEe
Q 045980 73 AYADV---DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 73 ~v~d~---~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~ 118 (125)
..+|. ++++++|.+-| . +++ +..++.|..|..|.|+
T Consensus 78 ~~~~~ee~~~~f~~Ls~gG-~--------~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 78 ECDDEEEIDRIFDKLSEGG-Q--------WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EESSHHHHHHHHHHHHTTT-E--------TCC-EEEEEE-TTS-EEEEE
T ss_pred EcCCHHHHHHHHHHHHcCC-C--------ccc-eeEEEEeCCCCEEEeC
Confidence 88765 55677776544 4 345 8899999999999985
No 91
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.88 E-value=6.6e-09 Score=71.12 Aligned_cols=120 Identities=12% Similarity=0.083 Sum_probs=71.5
Q ss_pred Ceec--CHHHHHHHHHHhcCCeEEeecC----Ccee--eEEee--CCeEEEEeeccccccccccCCCCCCCCCCCCCeEE
Q 045980 1 IYVT--DVAKSVAFYAKAFDYTVRTLDH----SHRW--GELES--GQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEV 70 (125)
Q Consensus 1 i~v~--d~~~a~~FY~~~lg~~~~~~~~----~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (125)
|.|. |+++++.||+++|||+.....+ .... ..+.. +...|.+............... .....+.+..||
T Consensus 164 i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~f-l~~~~g~Gv~Hi 242 (353)
T TIGR01263 164 GNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEF-LEFYNGAGVQHI 242 (353)
T ss_pred cccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHH-HHHcCCCCccEE
Confidence 3566 9999999999999998753311 1111 11222 3455665432111000000000 011125678899
Q ss_pred EEEECCHHHHHHHHHHCCCeeccCCccCC------CC------------cEEEEEeCCCCCEEEEeeec
Q 045980 71 CFAYADVDAAYKRAVENGAVPVSEPEDKE------WG------------QKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 71 ~~~v~d~~~~~~~~~~~g~~~~~~~~~~~------~g------------~~~~~~~Dp~G~~iel~~~~ 121 (125)
+|.|+|+++++++|+++|++++..|.... .+ ....+=.|.+|.++++++..
T Consensus 243 Af~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D~d~~g~llqift~~ 311 (353)
T TIGR01263 243 ALNTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILIDGDEDGYLLQIFTKP 311 (353)
T ss_pred EEEcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEecCCCceEEEEeccC
Confidence 99999999999999999999987773311 01 01335567778888877653
No 92
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=9e-08 Score=61.06 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=67.4
Q ss_pred eecCHHHHHHHHHHhcCCeEEeecC-------------Ccee--eEE--eeCCeEEEEeeccccccccccCCCCCCCCCC
Q 045980 2 YVTDVAKSVAFYAKAFDYTVRTLDH-------------SHRW--GEL--ESGQTTIAFTRLHQHETDELTGSVQTPSSPQ 64 (125)
Q Consensus 2 ~v~d~~~a~~FY~~~lg~~~~~~~~-------------~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (125)
.|.|..++++||+++||+++.+..+ +..| ..+ ...++++.+.-.-+..- +.... +
T Consensus 24 kVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV----~~Yel----G 95 (299)
T KOG2943|consen 24 KVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGV----SKYEL----G 95 (299)
T ss_pred eecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCc----cceec----c
Confidence 5789999999999999999965321 1112 222 22344544432222111 11111 5
Q ss_pred CCCeEEEEEECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 65 RQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 65 ~~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
.+..++.+.++|+-...+.+...|++ .-|...+.+.||||+.++|.+..+
T Consensus 96 ndfg~i~I~s~dv~~~ve~v~~p~~~--------~~g~~~~~v~dPdGykF~l~~~~p 145 (299)
T KOG2943|consen 96 NDFGGITIASDDVFSKVEKVNAPGGK--------GSGCGIAFVKDPDGYKFYLIDRGP 145 (299)
T ss_pred CCcccEEEeHHHHHHHHHHhcCcCCc--------ccceEEEEEECCCCcEEEEeccCC
Confidence 57788999999888887777665552 224468899999999999997544
No 93
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.78 E-value=3e-07 Score=52.73 Aligned_cols=109 Identities=9% Similarity=0.075 Sum_probs=58.7
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEee--CCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELES--GQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 78 (125)
|.|.|=+...+||++.|||++..... ..+.+.. +..++.+...+.... .+.........+.+.|++..
T Consensus 6 lRVnnR~~ni~FY~~~LGfkll~EEn--a~a~lg~~~~~erlvlEESP~~rt--------r~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 6 LRVNNRDLNIDFYQKTLGFKLLSEEN--ALAILGDQQKEERLVLEESPSMRT--------RAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEESSHHHHHHHHTTTT--EEEEEET--TEEEEE-TT--EEEEEEE--TTT---------B--SSS-SEEEEEEEESSHH
T ss_pred EEEcCHHHhHHHHHhccCcEEeeccc--cEEEecCCCCceEEEEecCCcccc--------ccccCcceeeEEEEEcCCHH
Confidence 46889999999999999999987543 4444444 334555554433221 11111224567888888877
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
++-+ +.++|..+ ........| +.+-..+|+|..|.+.....
T Consensus 76 EIe~-LLar~~~~-~~l~kg~~g-yAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 76 EIEA-LLARGAQY-DRLYKGKNG-YAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp HHHH-HHHC-S---SEEEE-SSS-EEEEEE-TT--EEEEE--S-
T ss_pred HHHH-HHhccccc-ceeEEcCCc-eEEEEECCCCCEEEEEEcCC
Confidence 6644 55666552 223333335 88889999999999987654
No 94
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=4.5e-08 Score=62.41 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=74.1
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeC--CeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESG--QTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVD 78 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 78 (125)
|.|.|+++++.||++.||+++...+.....+.+..+ .+.+.+....... ... .+.+.+.+++..+++.
T Consensus 155 l~VgdL~ks~kyw~~~lgM~ilekeek~t~~~mgYgd~q~~LElt~~~~~i--------d~~--kg~griafaip~d~~~ 224 (299)
T KOG2943|consen 155 LNVGDLQKSIKYWEKLLGMKILEKEEKYTRARMGYGDEQCVLELTYNYDVI--------DRA--KGFGRIAFAIPTDDLP 224 (299)
T ss_pred EEehhHHHHHHHHHHHhCcchhhhhhhhhhhhhccCCcceEEEEEeccCcc--------ccc--ccceeEEEeccccccc
Confidence 468999999999999999999764343444445443 3455555322111 111 1445666777778888
Q ss_pred HHHHHHHHCCCeeccCCcc--CC--CCcEEEEEeCCCCCEEEEeee
Q 045980 79 AAYKRAVENGAVPVSEPED--KE--WGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~--~~--~g~~~~~~~Dp~G~~iel~~~ 120 (125)
.+-+.++..+.++..+... .| .+.+..-+.||||+.|.+.-.
T Consensus 225 ~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdd 270 (299)
T KOG2943|consen 225 KLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDD 270 (299)
T ss_pred cHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEecc
Confidence 8888888887777665543 22 345788899999999998754
No 95
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.55 E-value=5.7e-07 Score=62.24 Aligned_cols=120 Identities=9% Similarity=0.024 Sum_probs=72.2
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecC----Cc-----eeeEEeeCC--eEEEEeecccc-ccccccCCCCCCCCCCCCCe
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDH----SH-----RWGELESGQ--TTIAFTRLHQH-ETDELTGSVQTPSSPQRQPI 68 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~----~~-----~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 68 (125)
+.|.++++++.||+++|||+.....+ .. ....+..++ ..|.+...... ....+....- ....+.+..
T Consensus 186 iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL-~~~~G~GIQ 264 (398)
T PLN02875 186 GNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYL-EHNEGPGLQ 264 (398)
T ss_pred echhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHH-HhcCCCCee
Confidence 35679999999999999998753211 11 223334333 45555442211 1111122111 122257899
Q ss_pred EEEEEECCHHHHHHHHHHC----CCeeccCC-ccC------CCC-------------cEEEEEeCCCCCEEEEeeec
Q 045980 69 EVCFAYADVDAAYKRAVEN----GAVPVSEP-EDK------EWG-------------QKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 69 ~~~~~v~d~~~~~~~~~~~----g~~~~~~~-~~~------~~g-------------~~~~~~~Dp~G~~iel~~~~ 121 (125)
||+|.++|+.++.++|+++ |++.+..| ... -.+ ....+=.|.+|.++++++..
T Consensus 265 HIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~~~~ILvD~d~~G~LLQIFTkp 341 (398)
T PLN02875 265 HLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECEELGILVDKDDQGVLLQIFTKP 341 (398)
T ss_pred EEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHHHcCEEEecCCCceEEEEeccc
Confidence 9999999999999999998 99988754 220 011 01335566668888877653
No 96
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.46 E-value=1.2e-06 Score=52.19 Aligned_cols=114 Identities=20% Similarity=0.257 Sum_probs=70.4
Q ss_pred eecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHHHHH
Q 045980 2 YVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAAY 81 (125)
Q Consensus 2 ~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 81 (125)
.+.|.+++..++ ..|||+......+.....++-|+..+.+...+.......... .+.+.-.|.|+|+|.++++
T Consensus 16 a~~~~~~l~~~~-~~lGF~~~a~hrsk~v~l~rQG~I~~vln~ep~s~a~~~~~~------HG~sv~aiafrV~Da~~A~ 88 (139)
T PF14696_consen 16 AVPDAQALAQLF-TALGFQPVARHRSKDVTLYRQGDINFVLNSEPDSFAAEFAAQ------HGPSVCAIAFRVDDAAAAY 88 (139)
T ss_dssp E-SSTTSCHHHH-CCCCEEEECCECCCSEEEEEETTEEEEEEEESTSCHHHHHHH------HSSEEEEEEEEES-HHHHH
T ss_pred ecCCHHHHHHHH-HHhCcceEEecCCcceEEEEeCCEEEEEeCCCcchHHHHHHh------cCCEEEEEEEEeCCHHHHH
Confidence 466766666666 579999865433345556677888888876443211100100 0456678999999999999
Q ss_pred HHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeeccC
Q 045980 82 KRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQA 123 (125)
Q Consensus 82 ~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~~ 123 (125)
+++.+.|.+.+.++.... -....-|+-+.|-++-|+++...
T Consensus 89 ~rA~~~GA~~~~~~~~~~-e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 89 ERAVALGAEPVQEPTGPG-ELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp HHHHHTT--EEEEEEETT--BEEEEEE-CCC-EEEEEE--SS
T ss_pred HHHHHcCCcCcccCCCCC-cEeeeeEEccCCCEEEEEecCCC
Confidence 999999999876654322 23566788888888888876543
No 97
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.45 E-value=7.8e-06 Score=56.75 Aligned_cols=120 Identities=20% Similarity=0.273 Sum_probs=74.8
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecC----Cce--eeEEeeCCeEEEEeeccccc--c--ccccCCCCCC----------
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDH----SHR--WGELESGQTTIAFTRLHQHE--T--DELTGSVQTP---------- 60 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~---------- 60 (125)
++|.|.+++..||+..|||+...... +.. ...++-|+..+.+....... . +........+
T Consensus 6 f~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 85 (398)
T PLN02875 6 FWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSDAARRF 85 (398)
T ss_pred EEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcHHHHHH
Confidence 37899999999999999999854322 111 23445567777776542110 0 0000000000
Q ss_pred -CCCCCCCeEEEEEECCHHHHHHHHHHCCCeeccCCccCC----CC-cEEEEEeCCCCCEEEEeee
Q 045980 61 -SSPQRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKE----WG-QKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 61 -~~~~~~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~~~----~g-~~~~~~~Dp~G~~iel~~~ 120 (125)
...+.+.-.++|+|+|++++++++.++|++++.++.... .| .....+.-+.|..+-|+++
T Consensus 86 ~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr 151 (398)
T PLN02875 86 FAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSY 151 (398)
T ss_pred HHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEcc
Confidence 001457778999999999999999999999887766431 12 2444566666777666654
No 98
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.44 E-value=6.2e-07 Score=59.46 Aligned_cols=107 Identities=20% Similarity=0.353 Sum_probs=67.5
Q ss_pred eecCHHHHHHHHHHhcCCeEEee----cCCceeeEEee--CCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC
Q 045980 2 YVTDVAKSVAFYAKAFDYTVRTL----DHSHRWGELES--GQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA 75 (125)
Q Consensus 2 ~v~d~~~a~~FY~~~lg~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (125)
.|.|...++.|||..|||+.... .+...++.... |...+.+...-... .+..|.+- +.. +.+.-.+||+|+
T Consensus 24 ~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~-~~~~G~~l-~~H-gdgvkdvafeVe 100 (381)
T KOG0638|consen 24 WVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPD-NSEYGDHL-VKH-GDGVKDVAFEVE 100 (381)
T ss_pred EecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCC-chhhhhhh-hhc-ccchhceEEEec
Confidence 68899999999999999998532 23334444433 44444444322111 11222111 111 456778999999
Q ss_pred CHHHHHHHHHHCCCeeccCCccCC--CC-cEEEEEeCCC
Q 045980 76 DVDAAYKRAVENGAVPVSEPEDKE--WG-QKVGYVRDIN 111 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~~~~--~g-~~~~~~~Dp~ 111 (125)
|++++++.+.++|.++..+|.... .| .+.+.++.+.
T Consensus 101 D~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tyg 139 (381)
T KOG0638|consen 101 DADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYG 139 (381)
T ss_pred chHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEeccc
Confidence 999999999999999988876422 22 3555565554
No 99
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.29 E-value=7e-06 Score=53.47 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=43.0
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCe--EEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQT--TIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADV 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 77 (125)
|.|.|+++|.+||.++|||++.... ..-.++..|+- ++++..+..... ...+ ....+...+.+.+.+-
T Consensus 174 L~v~~l~eA~~fY~~~LG~~~~~~~--~~A~F~a~G~YHHHia~N~W~s~~~------~~~~-~~~~GLa~~~i~~~~~ 243 (265)
T COG2514 174 LKVADLEEAEQFYEDVLGLEVTARG--PSALFLASGDYHHHLAANTWNSRGA------RPRN-ANASGLAWLEIHTPDP 243 (265)
T ss_pred EEeCCHHHHHHHHHHhcCCeeeecC--CcceEEecCCcceeEEEeccccCCC------CCCC-CCCCCcceEEEEcCCc
Confidence 5789999999999999999997652 34566677654 566554433211 1111 1134666677777653
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.94 E-value=1.6e-05 Score=53.62 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=59.4
Q ss_pred eecCHHHHHHHHHHhcCCeEEeec---CCce--e--eEEee-CCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEE
Q 045980 2 YVTDVAKSVAFYAKAFDYTVRTLD---HSHR--W--GELES-GQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFA 73 (125)
Q Consensus 2 ~v~d~~~a~~FY~~~lg~~~~~~~---~~~~--~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (125)
...++++...||+++|||+..... +... + +..+. |..+|-+....+.. ...+..-. ...+.++-||+|.
T Consensus 176 ~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~--sqi~efl~-~y~G~GIQHIA~~ 252 (363)
T COG3185 176 KAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDK--SQIGEFLR-EYRGEGIQHIAFG 252 (363)
T ss_pred chhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCch--hHHHHHHH-HhCCCcceEEEec
Confidence 345789999999999999986431 1111 1 11122 33455554433222 11121111 1126788999999
Q ss_pred ECCHHHHHHHHHHCCCeeccCCcc
Q 045980 74 YADVDAAYKRAVENGAVPVSEPED 97 (125)
Q Consensus 74 v~d~~~~~~~~~~~g~~~~~~~~~ 97 (125)
++|+.++.+++.+.|++.+..|.+
T Consensus 253 T~dI~~tv~~lr~rG~~fl~ip~t 276 (363)
T COG3185 253 TDDIYATVAALRERGVKFLPIPET 276 (363)
T ss_pred ccHHHHHHHHHHHcCCccCCCchh
Confidence 999999999999999998877755
No 101
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=97.60 E-value=0.00025 Score=40.47 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=44.9
Q ss_pred eEEEEEECCHHHHHHHHHH-CCCeeccCCccCCCCcEEEEEeCCCC-CEEEEeeeccCC
Q 045980 68 IEVCFAYADVDAAYKRAVE-NGAVPVSEPEDKEWGQKVGYVRDING-IVVRMGSYVQAS 124 (125)
Q Consensus 68 ~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~Dp~G-~~iel~~~~~~~ 124 (125)
.|+.|.|+|++++.+.+.+ .|+...........+.+..++..++| ..|||+++...+
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~ 59 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGD 59 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTT
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCC
Confidence 3899999999999999998 89876544444555667788888888 789999988754
No 102
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.52 E-value=0.00014 Score=45.14 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=44.2
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeec---C-CceeeEEeeCCeEEEEeeccccccccccCCCCCC-C-CCCCCCeEEEEEE
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLD---H-SHRWGELESGQTTIAFTRLHQHETDELTGSVQTP-S-SPQRQPIEVCFAY 74 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~v 74 (125)
|.|+|++++.++|++.|||.+.... . ...-..+..++.-|++............+..... . ..+.+...+++.+
T Consensus 6 ~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~t 85 (175)
T PF13468_consen 6 IAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYGWALRT 85 (175)
T ss_dssp EE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEEEEEE-
T ss_pred EEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEEEEEec
Confidence 4689999999999889999986431 1 1222344445557777764322211111111000 0 0145778899999
Q ss_pred CCHHHHHHHHHHCCCe
Q 045980 75 ADVDAAYKRAVENGAV 90 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~ 90 (125)
+|+++..+++.+.|+.
T Consensus 86 ~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 86 DDIEAVAARLRAAGLD 101 (175)
T ss_dssp S-HHHHHHHHHTTT-E
T ss_pred CCHHHHHHHHHhcCCC
Confidence 9999999999999975
No 103
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.0065 Score=36.32 Aligned_cols=95 Identities=14% Similarity=0.226 Sum_probs=60.8
Q ss_pred cCHHHHHHHHHHhc-CCeEE---eec--------CCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEE
Q 045980 4 TDVAKSVAFYAKAF-DYTVR---TLD--------HSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVC 71 (125)
Q Consensus 4 ~d~~~a~~FY~~~l-g~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (125)
.+.++|..||.++| +.++. +.+ +....+.++.++..+.......... .+ -..-+++.
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~~--------f~---fneA~S~~ 82 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNTS--------FK---FNEAFSFQ 82 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCcC--------CC---cCccEEEE
Confidence 57899999999999 44443 211 1234578888888776554221110 00 11235666
Q ss_pred EEECC---HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 72 FAYAD---VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 72 ~~v~d---~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
+.++| +|+++..+...|++. ....+++|..|.-|+|.-
T Consensus 83 v~~~~q~E~Drlwnal~~~g~e~----------~~cgW~kDKfGVSWQi~p 123 (151)
T COG3865 83 VACDDQEEIDRLWNALSDNGGEA----------EACGWLKDKFGVSWQIVP 123 (151)
T ss_pred EEcCCHHHHHHHHHHHhccCcch----------hcceeEecccCcEEEEcH
Confidence 66654 677888888888721 145689999999999863
No 104
>PF15067 FAM124: FAM124 family
Probab=97.49 E-value=0.0021 Score=41.41 Aligned_cols=97 Identities=15% Similarity=0.254 Sum_probs=58.1
Q ss_pred Ceec--CHHHHHHHHHHhcCCeEEeecCCceeeEEe---eCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC
Q 045980 1 IYVT--DVAKSVAFYAKAFDYTVRTLDHSHRWGELE---SGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA 75 (125)
Q Consensus 1 i~v~--d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (125)
|+|+ |.+.+++||+-+|+-+...... .+..+. ..+..|.+.-... ..+.... ......+.|.|.
T Consensus 134 ly~~~~N~~d~vr~Yelil~~~~~~~k~--~FC~F~lys~~~~~iQlsLK~l-----p~~~~p~----p~esavLqF~V~ 202 (236)
T PF15067_consen 134 LYCSFDNYEDMVRFYELILQREPTQQKE--DFCFFTLYSQPGLDIQLSLKQL-----PPGMSPE----PTESAVLQFRVE 202 (236)
T ss_pred EEecCCCHHHHHHHHHHHhccCcceeeC--CcEEEEEecCCCeEEEEEeccC-----CCCCCcc----cccceEEEEEec
Confidence 3566 9999999999999998864322 343333 2444555443221 1222222 235668999999
Q ss_pred CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEE
Q 045980 76 DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRM 117 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel 117 (125)
|+-++..-+ -.....+++ .-| -..|||||.|-|
T Consensus 203 ~igqLvpLL-Pnpc~PIS~---~rW-----qT~D~DGNkILL 235 (236)
T PF15067_consen 203 DIGQLVPLL-PNPCSPISE---TRW-----QTEDYDGNKILL 235 (236)
T ss_pred chhhhcccC-CCCcccccC---Ccc-----eeeCCCCCEecc
Confidence 999886533 222222222 223 479999999854
No 105
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=96.98 E-value=0.031 Score=38.33 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=65.8
Q ss_pred eecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHHHHH
Q 045980 2 YVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAAY 81 (125)
Q Consensus 2 ~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 81 (125)
.|.|.+++..=|-..|||......-+.....++=|+..+.+..............+ +.+.-.+.|.|+|...++
T Consensus 29 ~~~d~~~~l~~l~~~lGF~~~~~Hrsk~v~l~rQGdinlvvn~~~~s~a~~f~~~H------gps~~a~a~~V~DA~~A~ 102 (363)
T COG3185 29 AVPDPQEALGALLGQLGFTAVAKHRSKAVTLYRQGDINLVVNAEPDSFAAEFLDKH------GPSACAMAFRVDDAEQAL 102 (363)
T ss_pred ecCCHHHHHHHHHHHhCccccccccccceeEEEeCCEEEEEcCCCcchhhHHHHhc------CCchheeEEeeCCHHHHH
Confidence 57788555555666899987543333344445557777777765443211111111 445668999999999999
Q ss_pred HHHHHCCCeeccCCcc---------CCCCcEEEEEeCCCC
Q 045980 82 KRAVENGAVPVSEPED---------KEWGQKVGYVRDING 112 (125)
Q Consensus 82 ~~~~~~g~~~~~~~~~---------~~~g~~~~~~~Dp~G 112 (125)
++..+.|.+....+.. ..-|....|+.|..|
T Consensus 103 a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 103 ARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred HHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 9999999954433331 112446778888873
No 106
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=95.56 E-value=0.22 Score=29.40 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=38.1
Q ss_pred CCeEEEEEECCHHHHHHHHHHCCCeeccCCcc-CC----------CCcEEEEEeCCCC-CEEEEeeec
Q 045980 66 QPIEVCFAYADVDAAYKRAVENGAVPVSEPED-KE----------WGQKVGYVRDING-IVVRMGSYV 121 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~-~~----------~g~~~~~~~Dp~G-~~iel~~~~ 121 (125)
+..|+++.|.|++++.+...+.|.++...... .. .+....++..|+| ..|||+++.
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~ 70 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFH 70 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEec
Confidence 45699999999999999988899876544321 11 1123445666655 578988754
No 107
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=95.49 E-value=0.0071 Score=40.82 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=43.6
Q ss_pred CCCCeEEEEEECCHHHHHHHHHHCCCeeccCCccCCC------C---------------cEEEEEeCCCCCEEEEeee
Q 045980 64 QRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEW------G---------------QKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 64 ~~~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~------g---------------~~~~~~~Dp~G~~iel~~~ 120 (125)
+++.-|+++.++|+-++.+.+.++|++.+.+|....- + .....=.|..|++++|++.
T Consensus 260 G~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQIFTK 337 (381)
T KOG0638|consen 260 GAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQIFTK 337 (381)
T ss_pred CCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEeeeecc
Confidence 6788999999999999999999999999987743210 0 1233456777999988764
No 108
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=94.81 E-value=0.42 Score=29.22 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=39.2
Q ss_pred CCeEEEEEECCHHHHHHHHHH-CCCeeccCCcc-----C------------CCC-cEEEEEeCCCCCEEEEeeecc
Q 045980 66 QPIEVCFAYADVDAAYKRAVE-NGAVPVSEPED-----K------------EWG-QKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~-----~------------~~g-~~~~~~~Dp~G~~iel~~~~~ 122 (125)
+..|+.+.|.|++++.+-..+ .|.+++.++.. . .+. ....++..+.|..||+++...
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~ 79 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKN 79 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccC
Confidence 567999999999999998866 79876532110 0 111 234566667788899998763
No 109
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.67 E-value=0.41 Score=27.14 Aligned_cols=55 Identities=18% Similarity=0.053 Sum_probs=36.3
Q ss_pred CCeEEEEEECCHHHHHHHHHH-CCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 66 QPIEVCFAYADVDAAYKRAVE-NGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+..|+.+.|.|++++.+...+ .|..+...........+.+.+..+++..+++...
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 58 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSF 58 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEc
Confidence 456999999999999998864 8888764332222122334455566777777653
No 110
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=94.57 E-value=0.18 Score=27.28 Aligned_cols=48 Identities=19% Similarity=0.061 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeeccCC
Q 045980 76 DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQAS 124 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~~~ 124 (125)
...++.+.+.+.|+.+. .......|.+.+...|++|+.+++.-....|
T Consensus 30 ~~~~~~~~l~~~G~~v~-~ve~~~~g~yev~~~~~dG~~~ev~vD~~tG 77 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVR-EVEFDDDGCYEVEARDKDGKKVEVYVDPATG 77 (83)
T ss_pred CHHHHHHHHHhcCCceE-EEEEcCCCEEEEEEEECCCCEEEEEEcCCCC
Confidence 78889999999999543 3333234558899999999999998776655
No 111
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=94.17 E-value=0.052 Score=33.65 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=30.1
Q ss_pred EEEEEECCHHHHHHHH-HHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 69 EVCFAYADVDAAYKRA-VENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 69 ~~~~~v~d~~~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
|+.+.|+|++++.+++ .+.|+.+........+|-....+.=++| -|||+...
T Consensus 3 H~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~-YlEli~i~ 55 (175)
T PF13468_consen 3 HLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG-YLELIAID 55 (175)
T ss_dssp EEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS-EEEEEEES
T ss_pred EEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc-eEEEEEeC
Confidence 8999999999999999 8889998766555556654444444777 99999853
No 112
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=93.90 E-value=0.074 Score=30.05 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=35.5
Q ss_pred CeecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEEC---CH
Q 045980 1 IYVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYA---DV 77 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---d~ 77 (125)
|.|.| +++.+||.++||-+.. ..+.+....... ...+....-+.-.+-|.|+ |+
T Consensus 11 LNV~d-~~~~~fy~~~f~~~~~---------------~~l~f~ea~G~D-------L~~~~~~twDLe~Lkf~V~~~~Dl 67 (101)
T PF14507_consen 11 LNVPD-AKSQSFYQSIFGGQLP---------------FFLTFQEAQGPD-------LTIENNETWDLEMLKFQVPKDFDL 67 (101)
T ss_dssp EEE-T--T---S--H---HHHT---------------TTEEEEE---CC-------GSS-TTSBSSEEEEEEEES-S--H
T ss_pred EeCCC-hhHHHHHHhccccCCC---------------ceEEEeeccCCc-------cccCCCcEEeeEEEEEEecCcccH
Confidence 46788 7799999998873321 123332211000 0000000124446777886 67
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEE
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRM 117 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel 117 (125)
.++.+++.+.++ .+.. ..+.+.+.||.|.-|-+
T Consensus 68 ~~L~~~le~~~~-fidK------k~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 68 AALKSHLEEQEF-FIDK------KEKFLVTSDPSQIELWF 100 (101)
T ss_dssp HHHHHHTTTS-E-E--T------T-SEEEEE-TTS-EEEE
T ss_pred HHHHHHhcccce-EecC------CceEEEEECCcceEEEe
Confidence 788888876333 2211 23788999999876644
No 113
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=93.90 E-value=0.66 Score=26.47 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=35.5
Q ss_pred eEEEEEECCHHHHHHHHHH-CCCeeccCCccC-CCCcEEEEEeCCCCCEEEEeeecc
Q 045980 68 IEVCFAYADVDAAYKRAVE-NGAVPVSEPEDK-EWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 68 ~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~-~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
-|+.+.|+|++++.+...+ .|..+....... ..+....++. .+|..++|+++..
T Consensus 2 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~ 57 (128)
T cd07249 2 DHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLG-LGNVQIELIEPLD 57 (128)
T ss_pred cEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEE-cCCEEEEEEEECC
Confidence 3899999999999998876 888765433222 1222334444 4678888887643
No 114
>PRK11478 putative lyase; Provisional
Probab=91.72 E-value=1.5 Score=25.11 Aligned_cols=55 Identities=15% Similarity=0.018 Sum_probs=33.1
Q ss_pred CCeEEEEEECCHHHHHHHHHH-CCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 66 QPIEVCFAYADVDAAYKRAVE-NGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+..|+++.|+|++++.+...+ .|.++.........+.+...+.-.++..+++++.
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 61 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSF 61 (129)
T ss_pred eecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEe
Confidence 456999999999999988855 7888753322111111112222234567787753
No 115
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=91.50 E-value=1.3 Score=23.97 Aligned_cols=51 Identities=16% Similarity=0.055 Sum_probs=36.4
Q ss_pred EEEEEECCHHHHHHHHHH-CCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 69 EVCFAYADVDAAYKRAVE-NGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 69 ~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
|+.+.+.|++++.+...+ .|.++...... . +....++.++ +..++|.....
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-~-~~~~~~~~~~-~~~i~l~~~~~ 52 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-G-GAEFAVLGLG-GTRLELFEGDE 52 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc-C-CEEEEEEecC-CceEEEecCCC
Confidence 678899999999999987 89887655432 1 1255566655 78888887654
No 116
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=90.99 E-value=1.8 Score=24.43 Aligned_cols=53 Identities=8% Similarity=0.026 Sum_probs=33.6
Q ss_pred eEEEEEECCHHHHHHHHHH-CCCeeccCCccCCCCcEEEEEeCCC---CCEEEEeee
Q 045980 68 IEVCFAYADVDAAYKRAVE-NGAVPVSEPEDKEWGQKVGYVRDIN---GIVVRMGSY 120 (125)
Q Consensus 68 ~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~Dp~---G~~iel~~~ 120 (125)
.|+.+.|.|++++.+...+ .|.++.........+...+++..+. +..+++...
T Consensus 2 ~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 58 (121)
T cd07233 2 LHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYN 58 (121)
T ss_pred eeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEec
Confidence 4899999999999999876 5887654332221122334454443 567777654
No 117
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=90.80 E-value=1.9 Score=24.40 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=35.8
Q ss_pred CeEEEEEECCHHHHHHHHHH-CCCeeccCCccCCC-CcEEEEEeCC---CCCEEEEeeec
Q 045980 67 PIEVCFAYADVDAAYKRAVE-NGAVPVSEPEDKEW-GQKVGYVRDI---NGIVVRMGSYV 121 (125)
Q Consensus 67 ~~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~~~-g~~~~~~~Dp---~G~~iel~~~~ 121 (125)
..|+.+.|+|++++.+...+ .|.++......... +....++.+. .|..++|+...
T Consensus 2 i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 61 (126)
T cd08346 2 LHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWP 61 (126)
T ss_pred cccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecC
Confidence 45899999999999998875 68876544222111 1244555554 56778877653
No 118
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=89.90 E-value=2.3 Score=24.02 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=32.0
Q ss_pred eEEEEEECCHHHHHHHHHH-CCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 68 IEVCFAYADVDAAYKRAVE-NGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 68 ~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
.|+++.|+|++++.+...+ .|.++.........+....++.-.+|..+++++
T Consensus 3 ~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 55 (125)
T cd07241 3 EHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMT 55 (125)
T ss_pred eEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEc
Confidence 5999999999999888866 577654221111112223344334567788875
No 119
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=89.31 E-value=2.7 Score=24.02 Aligned_cols=51 Identities=16% Similarity=-0.016 Sum_probs=32.7
Q ss_pred CeEEEEEECCHHHHHHHHHHC----CCeeccCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 67 PIEVCFAYADVDAAYKRAVEN----GAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 67 ~~~~~~~v~d~~~~~~~~~~~----g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
..|+.+.|.|++++.+...+. |.++...... ...|+...++..+++.+...
T Consensus 2 i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-----~~~~~~~~~~~~i~l~~~~~ 56 (128)
T cd07242 2 IHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-----GRSWRAGDGGTYLVLQQADG 56 (128)
T ss_pred CceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-----CceEEecCCceEEEEEeccc
Confidence 458999999999998888775 8876544311 12233224556777765543
No 120
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=87.78 E-value=3.5 Score=23.43 Aligned_cols=52 Identities=21% Similarity=0.036 Sum_probs=33.2
Q ss_pred eEEEEEECCHHHHHHHHHH-CCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 68 IEVCFAYADVDAAYKRAVE-NGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 68 ~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
.|+.+.|+|++++.+...+ .|.+.........++ ...++..+.+..++|+.+
T Consensus 3 ~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~i~l~~~ 55 (128)
T TIGR03081 3 DHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQG-VKVVFIALGNTKVELLEP 55 (128)
T ss_pred CEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCC-cEEEEEecCCEEEEEEec
Confidence 5899999999999998864 788765332112223 233444344667888764
No 121
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.59 E-value=2 Score=21.41 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=22.7
Q ss_pred CCeEEEEEECCHHHHHHHHHHCCCeec
Q 045980 66 QPIEVCFAYADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~~g~~~~ 92 (125)
+...+.+.+++.+.+.+.++++|++++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v~ 65 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVELV 65 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceEC
Confidence 445788899999999999999998763
No 122
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=86.52 E-value=4 Score=25.75 Aligned_cols=57 Identities=11% Similarity=-0.029 Sum_probs=39.2
Q ss_pred CCeEEEEEEC--CHHHHHHHHHH-CCCeeccCCcc-C-CCCcEEEEEeCCCC-CEEEEeeecc
Q 045980 66 QPIEVCFAYA--DVDAAYKRAVE-NGAVPVSEPED-K-EWGQKVGYVRDING-IVVRMGSYVQ 122 (125)
Q Consensus 66 ~~~~~~~~v~--d~~~~~~~~~~-~g~~~~~~~~~-~-~~g~~~~~~~Dp~G-~~iel~~~~~ 122 (125)
...|+++.|+ |++++.+...+ .|.+....... . .-+.++..+..|+| ..++|.++..
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~ 65 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPAS 65 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCC
Confidence 3468999999 99999988755 88876543221 1 12446677888874 5688887654
No 123
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=86.03 E-value=5.1 Score=23.47 Aligned_cols=50 Identities=16% Similarity=0.053 Sum_probs=32.3
Q ss_pred eEEEEEECCHHHHHHHHHH-CCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 68 IEVCFAYADVDAAYKRAVE-NGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 68 ~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
.|+.+.|.|++++.+...+ .|.++....... +.....+. ..+..+++..+
T Consensus 2 ~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~-~g~~~l~l~~~ 52 (136)
T cd08342 2 DHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLR-QGDINFVLNSP 52 (136)
T ss_pred eEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEE-cCCEEEEEecC
Confidence 4899999999999998888 898876433211 22333343 34555666554
No 124
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=85.70 E-value=6 Score=24.05 Aligned_cols=49 Identities=20% Similarity=0.091 Sum_probs=32.7
Q ss_pred CeEEEEEECCHHHHHHHHHH-CCCeeccCCccCCCCcEEEEEeC--CCCCEEEEeee
Q 045980 67 PIEVCFAYADVDAAYKRAVE-NGAVPVSEPEDKEWGQKVGYVRD--INGIVVRMGSY 120 (125)
Q Consensus 67 ~~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~D--p~G~~iel~~~ 120 (125)
..|+.+.|.|++++.+...+ .|.++..... + ...++.. ..|..+.+.+.
T Consensus 2 l~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~----~-~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 2 LHGVTLTVRDPEATAAFLTDVLGFREVGEEG----D-RVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred cccEEEEeCCHHHHHHHHHHhcCCEEEeeeC----C-EEEEEecCCCCCCEEEEEeC
Confidence 46899999999999988865 5887654321 2 2222222 34778888764
No 125
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=84.00 E-value=5.1 Score=21.84 Aligned_cols=51 Identities=12% Similarity=-0.043 Sum_probs=32.7
Q ss_pred eEEEEEECCHHHHHHHHH-HCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 68 IEVCFAYADVDAAYKRAV-ENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 68 ~~~~~~v~d~~~~~~~~~-~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
.|+.+.|+|++++.+... -.|.+....+... . ...++..+++..++|....
T Consensus 2 ~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~--~-~~~~~~~~~~~~i~l~~~~ 53 (114)
T cd07245 2 DHVALRVPDLEASRAFYTDVLGLEEGPRPPFL--F-PGAWLYAGDGPQLHLIEED 53 (114)
T ss_pred CeEEEecCCHHHHHHHHHHccCCcccCcCCCC--C-CceEEEeCCCcEEEEEecC
Confidence 489999999999988885 5787765443221 1 2344554555567776543
No 126
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=83.19 E-value=9.2 Score=24.16 Aligned_cols=32 Identities=13% Similarity=-0.041 Sum_probs=25.4
Q ss_pred CCCCeEEEEEECCHHHHHHHHH-HCCCeeccCC
Q 045980 64 QRQPIEVCFAYADVDAAYKRAV-ENGAVPVSEP 95 (125)
Q Consensus 64 ~~~~~~~~~~v~d~~~~~~~~~-~~g~~~~~~~ 95 (125)
+-...|.+|.|.|+++..+... ..|.+++...
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~ 57 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRL 57 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEE
Confidence 4456889999999999999885 4798876553
No 127
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=82.89 E-value=7.2 Score=22.67 Aligned_cols=29 Identities=10% Similarity=-0.019 Sum_probs=23.0
Q ss_pred CCeEEEEEECCHHHHHHHHHH-CCCeeccC
Q 045980 66 QPIEVCFAYADVDAAYKRAVE-NGAVPVSE 94 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~-~g~~~~~~ 94 (125)
+..|+.+.|+|++++.+...+ .|.++...
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEe
Confidence 567899999999999888865 78765443
No 128
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.83 E-value=2.4 Score=27.59 Aligned_cols=23 Identities=9% Similarity=0.309 Sum_probs=19.0
Q ss_pred cCHHHHHHHHHHhcCCeEEeecC
Q 045980 4 TDVAKSVAFYAKAFDYTVRTLDH 26 (125)
Q Consensus 4 ~d~~~a~~FY~~~lg~~~~~~~~ 26 (125)
.|+.+++.||.+.||+.+....+
T Consensus 145 a~~~e~a~wy~dyLGleie~~hg 167 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGHG 167 (246)
T ss_pred hccHHHHHHHHHhcCceeeeccC
Confidence 36788999999999999976544
No 129
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=79.36 E-value=9.1 Score=21.59 Aligned_cols=24 Identities=17% Similarity=-0.042 Sum_probs=20.9
Q ss_pred EEEEEECCHHHHHHHHHHCCCeec
Q 045980 69 EVCFAYADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 69 ~~~~~v~d~~~~~~~~~~~g~~~~ 92 (125)
|+.+.|+|++++.+-....|.++.
T Consensus 3 ~i~l~V~D~~~a~~FY~~LGf~~~ 26 (122)
T cd07235 3 AVGIVVADMAKSLDFYRRLGFDFP 26 (122)
T ss_pred eEEEEeccHHHHHHHHHHhCceec
Confidence 789999999999888877898764
No 130
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=78.19 E-value=3.3 Score=16.66 Aligned_cols=14 Identities=14% Similarity=0.038 Sum_probs=10.2
Q ss_pred EEEEEeCCCCCEEE
Q 045980 103 KVGYVRDINGIVVR 116 (125)
Q Consensus 103 ~~~~~~Dp~G~~ie 116 (125)
-...+.|++|++|-
T Consensus 7 I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 7 IYSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEEE-TTSCEEE
T ss_pred EEEEEEcCCcCEEE
Confidence 45678999999884
No 131
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=77.98 E-value=3 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.2
Q ss_pred CCeEEEEEECCHHHHHHHHHHCCCeeccC
Q 045980 66 QPIEVCFAYADVDAAYKRAVENGAVPVSE 94 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~~g~~~~~~ 94 (125)
....+.++|+|+|++.+.|..+|++++..
T Consensus 108 ~KAlli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 108 QKALLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred ceEEEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 33467789999999999999999998743
No 132
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=77.22 E-value=11 Score=21.15 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=32.7
Q ss_pred CeEEEEEECCHHHHHHHHHH-CCCeeccCCc-cCCCC-cEEEEEeCCCCCEEEEee
Q 045980 67 PIEVCFAYADVDAAYKRAVE-NGAVPVSEPE-DKEWG-QKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 67 ~~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~-~~~~g-~~~~~~~Dp~G~~iel~~ 119 (125)
..|+.+.|.|++++.+...+ .|.+++.... ....+ ....++...+.. +++..
T Consensus 2 l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 56 (128)
T PF00903_consen 2 LDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGH-IELFL 56 (128)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSC-EEEEE
T ss_pred eEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccc-eeeee
Confidence 35899999999999888866 7887765444 11112 244455555543 44443
No 133
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.08 E-value=8 Score=19.71 Aligned_cols=25 Identities=4% Similarity=-0.141 Sum_probs=19.2
Q ss_pred EEEEEECCHHHHHHHHHHCCCeecc
Q 045980 69 EVCFAYADVDAAYKRAVENGAVPVS 93 (125)
Q Consensus 69 ~~~~~v~d~~~~~~~~~~~g~~~~~ 93 (125)
.+.+.+++.+.+.+.|.+.|+++..
T Consensus 46 ~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 46 VFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred EEEEecCCHHHHHHHHHHCCCeeeC
Confidence 3444446888999999999998763
No 134
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=76.86 E-value=10 Score=20.89 Aligned_cols=49 Identities=16% Similarity=-0.027 Sum_probs=32.0
Q ss_pred EEEEEECCHHHHHHHHHH-CCCeeccCCccCCCCcEEEEEeCCCC--CEEEEe
Q 045980 69 EVCFAYADVDAAYKRAVE-NGAVPVSEPEDKEWGQKVGYVRDING--IVVRMG 118 (125)
Q Consensus 69 ~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~Dp~G--~~iel~ 118 (125)
|+.+.|.|++++.+...+ .|.++....... .+...+.+.++++ ..+.+.
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 52 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMG-GGFRWVTVAPPGSPETSLVLA 52 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccC-CCcEEEEEeCCCCCeeEEEEe
Confidence 688999999999888876 898876443211 1324555666654 345554
No 135
>PLN02367 lactoylglutathione lyase
Probab=76.10 E-value=20 Score=23.73 Aligned_cols=56 Identities=9% Similarity=-0.059 Sum_probs=36.3
Q ss_pred CCeEEEEEECCHHHHHHHHH-HCCCeeccCCccCCCCcEEEEEeC-------C------------CCCEEEEeeecc
Q 045980 66 QPIEVCFAYADVDAAYKRAV-ENGAVPVSEPEDKEWGQKVGYVRD-------I------------NGIVVRMGSYVQ 122 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~-~~g~~~~~~~~~~~~g~~~~~~~D-------p------------~G~~iel~~~~~ 122 (125)
..-|..++|.|+++..+... ..|.+++........+ -..||.. | .+..|||.++..
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~-f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g 150 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMK-FSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWG 150 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCc-EEEEEeecCCccccccccccceeeccCCCCEEEEecCCC
Confidence 45688999999999988884 4798876544332223 3444442 1 145899987654
No 136
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.35 E-value=8.2 Score=20.83 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=23.2
Q ss_pred CCeEEEEEECC----HHHHHHHHHHCCCeecc
Q 045980 66 QPIEVCFAYAD----VDAAYKRAVENGAVPVS 93 (125)
Q Consensus 66 ~~~~~~~~v~d----~~~~~~~~~~~g~~~~~ 93 (125)
+.+.+.+++++ ++.+.+.|.++|+++..
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 44677888888 89999999999998754
No 137
>PRK03467 hypothetical protein; Provisional
Probab=71.92 E-value=18 Score=22.02 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHCCCeec-cCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 75 ADVDAAYKRAVENGAVPV-SEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~-~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
++...+.+-+.+..+--+ ......+|....+|+.|+++..+-+.+...
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S~~~ 53 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLTEEK 53 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEcCCC
Confidence 456667777777665322 222346677778899999999998887654
No 138
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=71.62 E-value=18 Score=21.31 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=23.5
Q ss_pred CCeEEEEEECCHHHHHHHHH-HCCCeeccC
Q 045980 66 QPIEVCFAYADVDAAYKRAV-ENGAVPVSE 94 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~-~~g~~~~~~ 94 (125)
...|+++.|.|+++..+--. ..|.+++..
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~ 31 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRH 31 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEee
Confidence 35699999999999999885 479987643
No 139
>PHA00450 host dGTPase inhibitor
Probab=70.72 E-value=13 Score=20.10 Aligned_cols=44 Identities=20% Similarity=0.051 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHCCCeeccCCccCCC---CcEEEEEeCCCCCEEEEee
Q 045980 76 DVDAAYKRAVENGAVPVSEPEDKEW---GQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~~~~~---g~~~~~~~Dp~G~~iel~~ 119 (125)
+..++.+||.+..+.++.+...... -.....+.|..|++|...+
T Consensus 11 afKaA~~RL~q~D~aVi~e~~~~~~~~k~c~~LRvedR~G~~i~s~t 57 (85)
T PHA00450 11 AFKAATARLFEHDVAVIVEEFYYENPAKMCMSLRVEDRSGHLIASRT 57 (85)
T ss_pred HHHHHHHHHHhcceeEEEeehhccchhhheeEEEEEecCCCEeeeee
Confidence 4678899999999988766543221 2246789999999986543
No 140
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=70.56 E-value=16 Score=20.31 Aligned_cols=28 Identities=11% Similarity=-0.032 Sum_probs=23.1
Q ss_pred CCeEEEEEECCHHHHHHHHHHCCCeecc
Q 045980 66 QPIEVCFAYADVDAAYKRAVENGAVPVS 93 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~~g~~~~~ 93 (125)
...|+.+.|.|++++.+.....|.++..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 3568999999999998888778987653
No 141
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=70.23 E-value=17 Score=20.45 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=23.0
Q ss_pred CeEEEEEECCHHHHHHHHHH-CCCeeccC
Q 045980 67 PIEVCFAYADVDAAYKRAVE-NGAVPVSE 94 (125)
Q Consensus 67 ~~~~~~~v~d~~~~~~~~~~-~g~~~~~~ 94 (125)
..|+.+.|+|++++.+...+ .|.++...
T Consensus 3 i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 31 (125)
T cd07255 3 IGAVTLRVADLERSLAFYQDVLGLEVLER 31 (125)
T ss_pred EEEEEEEECCHHHHHHHHHhccCcEEEEc
Confidence 35899999999999998876 78887654
No 142
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.90 E-value=12 Score=19.79 Aligned_cols=39 Identities=15% Similarity=0.023 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCeeccCCccCC--CCcEEEEEeCCCCCEE
Q 045980 77 VDAAYKRAVENGAVPVSEPEDKE--WGQKVGYVRDINGIVV 115 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~--~g~~~~~~~Dp~G~~i 115 (125)
+.++.+.+.+.|..+...--... +-.-.||+.|++|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 56677778889988653322221 2235899999999876
No 143
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=68.67 E-value=14 Score=18.68 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=20.2
Q ss_pred eEEEEEECCHHHHHHHHHHCCCeec
Q 045980 68 IEVCFAYADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 68 ~~~~~~v~d~~~~~~~~~~~g~~~~ 92 (125)
..+.+.++|.+++.+.|.++|+++.
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCCEEE
Confidence 4566677999899999999998763
No 144
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=66.04 E-value=23 Score=20.31 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=31.8
Q ss_pred CeEEEEEECCHHHHHHHHHH-CCCeeccCCccCCCCcEEEEEeCC--CCCEEEEeee
Q 045980 67 PIEVCFAYADVDAAYKRAVE-NGAVPVSEPEDKEWGQKVGYVRDI--NGIVVRMGSY 120 (125)
Q Consensus 67 ~~~~~~~v~d~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~Dp--~G~~iel~~~ 120 (125)
..|+.+.|+|++++.+...+ .|.++...... . ...++..+ .+..+.+...
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~---~-~~~~~~~~~~~~~~l~l~~~ 54 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL---G-GLVFLSRDPDEHHQIALITG 54 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccC---C-cEEEEEecCCCceEEEEEec
Confidence 35899999999999998876 88876543221 1 23344333 3455666554
No 145
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=63.84 E-value=11 Score=22.12 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=19.2
Q ss_pred EEEEEECCHHHHHHHHHHCCCeec
Q 045980 69 EVCFAYADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 69 ~~~~~v~d~~~~~~~~~~~g~~~~ 92 (125)
|+-+.-+|++.+.+.|+++|.++.
T Consensus 104 hiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 104 HILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred eEEEehhhHHHHHHHHHHcCCccc
Confidence 444555899999999999998764
No 146
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=62.24 E-value=32 Score=20.66 Aligned_cols=29 Identities=21% Similarity=-0.003 Sum_probs=23.6
Q ss_pred CCCeEEEEEECCHHHHHHHHHH-CCCeecc
Q 045980 65 RQPIEVCFAYADVDAAYKRAVE-NGAVPVS 93 (125)
Q Consensus 65 ~~~~~~~~~v~d~~~~~~~~~~-~g~~~~~ 93 (125)
.+..|+.+.|+|++++.+...+ .|.++..
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~ 37 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSD 37 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEE
Confidence 3667999999999999988866 7887643
No 147
>PF05526 R_equi_Vir: Rhodococcus equi virulence-associated protein; InterPro: IPR008810 This family consists of several virulence-associated proteins from Corynebacterium equii (Rhodococcus equi). R. equi is an important pulmonary pathogen of foals and is increasingly isolated from pneumonic infections and other infections in Homo sapiens immunodeficiency virus-infected patients. Isolates from foals possess a large virulence plasmid, varying in size from 80 to 90 kb. Isolates lacking the plasmid are avirulent to foals. Little is known about the function of the plasmid apart from its encoding a virulence associated surface protein [].
Probab=60.33 E-value=32 Score=21.62 Aligned_cols=50 Identities=12% Similarity=-0.040 Sum_probs=36.7
Q ss_pred CCCCeEEEEEECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 64 QRQPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 64 ~~~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+.+...=.+.++|++.+|+.-.+.-+..+.+ ...+.|.|++|+.+.-++.
T Consensus 111 G~g~~~GtLfT~Dl~rLY~dT~SF~~nav~p-------ylninFFD~~~~~Lgh~q~ 160 (177)
T PF05526_consen 111 GGGALWGTLFTSDLQRLYSDTVSFQYNAVGP-------YLNINFFDSDGNLLGHVQS 160 (177)
T ss_pred ccceEEEEEehhHHHHHhhhhheeEEecCCc-------eEEEEEecCCcceeeeeec
Confidence 4455566778999999999887765544322 2678899999999876664
No 148
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=60.18 E-value=36 Score=20.60 Aligned_cols=27 Identities=19% Similarity=0.042 Sum_probs=22.4
Q ss_pred CCeEEEEEECCHHHHHHHHHH-CCCeec
Q 045980 66 QPIEVCFAYADVDAAYKRAVE-NGAVPV 92 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~-~g~~~~ 92 (125)
...|+.+.|.|++++.+-..+ .|.++.
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~ 30 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVS 30 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEE
Confidence 456999999999999888866 788764
No 149
>PF10922 DUF2745: Protein of unknown function (DUF2745); InterPro: IPR020147 The T7-like bacteriophage gene 1.2 protein is an inhibitor of the Escherichia coli dGTP triphosphohydrolase (dGTPase) and is implicated in DNA replication.
Probab=59.28 E-value=28 Score=19.03 Aligned_cols=41 Identities=27% Similarity=0.017 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCC---CcEEEEEeCCCCCEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEW---GQKVGYVRDINGIVV 115 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~---g~~~~~~~Dp~G~~i 115 (125)
.+..++.+|+.+..+.++.+...... -.....+.|..||.+
T Consensus 10 nafKaA~~Rl~~lD~~V~~e~~~~~~~~~~~~~Lrv~dr~G~~v 53 (85)
T PF10922_consen 10 NAFKAATDRLYELDFAVISEEFYYSNPAKMCMVLRVEDRSGNSV 53 (85)
T ss_pred HHHHHHHHHHhhCcEEEEEEeeccccchhhEEEEEEEecCCCEe
Confidence 35678899999999887766543221 124578999999998
No 150
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=58.67 E-value=21 Score=26.35 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=25.7
Q ss_pred HHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEE
Q 045980 81 YKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRM 117 (125)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel 117 (125)
...|.++|+.+..-.....-|.+....+|+||+..|-
T Consensus 16 a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~ 52 (485)
T COG3349 16 AYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEH 52 (485)
T ss_pred HHHHHhCCCceEEEeccCccCceeeeeecCCCCeeee
Confidence 3457888987653333222355999999999999884
No 151
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=58.24 E-value=19 Score=17.90 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 76 DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
++++.-.+...+|-.+-.... -| ..-..+|||.++-|.+..
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~~~---~g--~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAAGP---PG--PVAAFAPDGRLVALLEER 45 (56)
T ss_dssp E--HHHHHHHHTT---B--------S---EEEE-TTS-EEEEEEEE
T ss_pred ECCHHHHHHHhCCCccCCCCC---Cc--eEEEECCCCcEEEEEEcc
Confidence 345555566777866543311 12 345889999999999764
No 152
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=55.56 E-value=6.1 Score=18.84 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=13.1
Q ss_pred CeecCHHHHHHHHHHhc
Q 045980 1 IYVTDVAKSVAFYAKAF 17 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~l 17 (125)
|.+++++...+||+.-|
T Consensus 17 iP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 17 IPLSNVDRPKDWYKTMF 33 (47)
T ss_pred CccccccchhHHHHHHH
Confidence 34577889999999755
No 153
>smart00300 ChSh Chromo Shadow Domain.
Probab=54.87 E-value=7.6 Score=19.74 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=14.7
Q ss_pred ecCHHHHHHHHHHhcCCe
Q 045980 3 VTDVAKSVAFYAKAFDYT 20 (125)
Q Consensus 3 v~d~~~a~~FY~~~lg~~ 20 (125)
.+.++..++||.+.|-|.
T Consensus 43 ~k~P~~vI~FYE~~l~~~ 60 (61)
T smart00300 43 VKCPQKVIRFYESHLTFQ 60 (61)
T ss_pred HHChHHHHHHHHHhCccC
Confidence 467889999999988663
No 154
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=54.49 E-value=8.2 Score=19.09 Aligned_cols=18 Identities=22% Similarity=0.408 Sum_probs=14.4
Q ss_pred eecCHHHHHHHHHHhcCC
Q 045980 2 YVTDVAKSVAFYAKAFDY 19 (125)
Q Consensus 2 ~v~d~~~a~~FY~~~lg~ 19 (125)
..+.+...++||.+.|-|
T Consensus 36 ~~k~P~~vI~FYE~~l~~ 53 (54)
T cd00034 36 NVKCPLLVISFYEEHLTY 53 (54)
T ss_pred HhhCcHHHHHHHHHhccc
Confidence 356788999999998765
No 155
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=53.58 E-value=13 Score=16.20 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=12.8
Q ss_pred ecCHHHHHHHHHHhcCC
Q 045980 3 VTDVAKSVAFYAKAFDY 19 (125)
Q Consensus 3 v~d~~~a~~FY~~~lg~ 19 (125)
..|.++|+.+|.+.|.+
T Consensus 12 ~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp CT-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 35789999999997743
No 156
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=51.05 E-value=58 Score=20.23 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=19.4
Q ss_pred EEEEEECCHHHHHHHHHHCCCeec
Q 045980 69 EVCFAYADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 69 ~~~~~v~d~~~~~~~~~~~g~~~~ 92 (125)
-+-+.+.|.+.+.+++.+.|+...
T Consensus 5 E~K~~v~d~~~~~~~L~~~g~~~~ 28 (174)
T TIGR00318 5 EVKAKIPDKEKVVEKLKNKGFKFI 28 (174)
T ss_pred EEEEEcCCHHHHHHHHHhcCcccc
Confidence 356678899999999999987644
No 157
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=50.46 E-value=28 Score=16.78 Aligned_cols=15 Identities=13% Similarity=-0.066 Sum_probs=12.2
Q ss_pred EEEEeCCCCCEEEEe
Q 045980 104 VGYVRDINGIVVRMG 118 (125)
Q Consensus 104 ~~~~~Dp~G~~iel~ 118 (125)
...+.||||....+.
T Consensus 30 sY~y~~pdG~~~~V~ 44 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVT 44 (52)
T ss_pred EEEEECCCCCEEEEE
Confidence 556899999988775
No 158
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.26 E-value=39 Score=18.00 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=25.9
Q ss_pred HHHHHHHHHHCCCeeccCCccCCCC---cEEEEEeCCCCCEEE
Q 045980 77 VDAAYKRAVENGAVPVSEPEDKEWG---QKVGYVRDINGIVVR 116 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~g---~~~~~~~Dp~G~~ie 116 (125)
+..+...+...|+.+...--.. .| .-.||++|.+|..+.
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T-~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDT-DGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEee-cCceEEEEEEEEcCCCCccC
Confidence 4566777788888765332222 23 258999999998763
No 159
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.67 E-value=35 Score=17.31 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=20.2
Q ss_pred CCeEEEEEE---CCHHHHHHHHHHCCCeec
Q 045980 66 QPIEVCFAY---ADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 66 ~~~~~~~~v---~d~~~~~~~~~~~g~~~~ 92 (125)
..+.+.+++ +.++++.+.|.+.|+++.
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 456677777 457788999999998753
No 160
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=49.63 E-value=56 Score=20.61 Aligned_cols=47 Identities=13% Similarity=0.033 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+..+++.+.+.+....-..+.+---.|...|.+.++||....|....
T Consensus 78 pk~del~akF~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~ 124 (181)
T COG1791 78 PKLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEK 124 (181)
T ss_pred ccHHHHHHHHHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEcc
Confidence 56777777776654432222222223667999999999999887654
No 161
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=49.27 E-value=41 Score=20.86 Aligned_cols=41 Identities=17% Similarity=0.061 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVR 116 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~ie 116 (125)
.|++.+.+.|.+.|.+++.+-.-..+| +..+|.--.|..+.
T Consensus 112 rNv~~a~~~L~~~gI~i~a~dvGG~~g-R~i~f~~~tG~v~v 152 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAEDIGGNKG-RTMIFDTSDGKVYI 152 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCC-cEEEEECCCCEEEE
Confidence 578999999999999988665545556 66666555565543
No 162
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=47.78 E-value=34 Score=19.72 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVR 116 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~ie 116 (125)
.+++.+.+-|.+.|.++...-.-..++ +..+|.--.|..+.
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dvGG~~~-R~v~f~~~tG~v~v 104 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDVGGNFG-RKVRFDPATGEVWV 104 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-SSS--EEEEEETTTTEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeCCCCCC-cEEEEEcCCCEEEE
Confidence 678999999999999988654444445 77777666666553
No 163
>COG3076 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.53 E-value=4.3 Score=23.36 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=22.1
Q ss_pred CCCeEEEEEECCHHHHHHHHHHCCCeeccCC---ccCCCCcEEEEEeCCCC
Q 045980 65 RQPIEVCFAYADVDAAYKRAVENGAVPVSEP---EDKEWGQKVGYVRDING 112 (125)
Q Consensus 65 ~~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~---~~~~~g~~~~~~~Dp~G 112 (125)
.+.+.+||.+-.--++-..++.+.++-+.+. ....|..|..|+.||+-
T Consensus 67 dG~~i~C~Diisev~L~aeiIDaQ~e~l~~L~Ek~~~~YDGWGTY~EdpnA 117 (135)
T COG3076 67 DGDIVICCDIISEVALNAELIDAQVEQLMPLAEKFDVEYDGWGTYFEDPNA 117 (135)
T ss_pred CCCEEEEeehhhhhhcCHHHHHHHHHHHHHHHHHhCceecCceeeccCCCc
Confidence 3667788876332222222222222211111 11113337789999973
No 164
>PRK03298 hypothetical protein; Provisional
Probab=47.13 E-value=46 Score=21.88 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=27.8
Q ss_pred HHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 84 AVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 84 ~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
++..|.+++......+.|.--.+.+|.+|+.+-+--
T Consensus 118 ~i~~G~~lv~rE~~t~~G~IDil~rD~~G~~V~vEv 153 (224)
T PRK03298 118 TLGEGYTLVRREYPTAIGPVDLLCRDADGGTVAVEI 153 (224)
T ss_pred HhcCCCEEEEEEecCCCCceeEEEEcCCCCEEEEEE
Confidence 356788887776667788788899999999876543
No 165
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.08 E-value=45 Score=18.11 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=20.7
Q ss_pred CCeEEEE--EECCHHHHHHHHHHCCCeec
Q 045980 66 QPIEVCF--AYADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 66 ~~~~~~~--~v~d~~~~~~~~~~~g~~~~ 92 (125)
...++.| .+++++++.+.+++.|+++-
T Consensus 49 ~Sy~V~Fl~~~~s~eev~~ele~mga~in 77 (88)
T COG4009 49 SSYYVVFLEEVESEEEVERELEDMGAEIN 77 (88)
T ss_pred eeEEEEEEeccCCHHHHHHHHHHhCchhc
Confidence 4445555 46889999999999999864
No 166
>PF14044 NETI: NETI protein
Probab=46.70 E-value=36 Score=17.17 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHCCCeeccCCc
Q 045980 75 ADVDAAYKRAVENGAVPVSEPE 96 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~ 96 (125)
+.+++.++|+.+.|+.++....
T Consensus 8 ETI~~CL~RM~~eGY~PvrR~E 29 (57)
T PF14044_consen 8 ETISDCLARMKKEGYMPVRRIE 29 (57)
T ss_pred CcHHHHHHHHHHcCCCceeecc
Confidence 4689999999999998765543
No 167
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=46.43 E-value=50 Score=20.47 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVR 116 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~ie 116 (125)
.|++.+.+.|.+.|.+++..-.-..+| +..+|.--+|..+.
T Consensus 105 rNi~~a~~~L~~~gI~i~a~dvGG~~g-R~i~f~~~tG~v~v 145 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAEDTGGNRA-RSIEYNIETGKLLV 145 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCC-cEEEEECCCCEEEE
Confidence 678999999999999988665544456 66666666666543
No 168
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=45.58 E-value=54 Score=20.49 Aligned_cols=40 Identities=20% Similarity=0.051 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVV 115 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~i 115 (125)
.|++.+.+.|.+.|++++.+-.-..+| +..+|.--.|..+
T Consensus 115 rNi~~a~~~L~~~gi~i~a~DvGG~~g-R~i~f~~~tG~v~ 154 (167)
T PRK13498 115 KNIHAALALAEQNGLHLKAQDLGSTGH-RSIIFDLWNGNVW 154 (167)
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCCC-cEEEEECCCCEEE
Confidence 678899999999999988665545556 5555555555543
No 169
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=45.16 E-value=54 Score=18.14 Aligned_cols=40 Identities=15% Similarity=0.020 Sum_probs=25.8
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
+.+...|.+.|..++..-...++|.--.-..| |..+.+++
T Consensus 4 ~~A~~~L~~~G~~IL~rN~r~~~GEIDiIa~~--~~~lvfVE 43 (93)
T PF02021_consen 4 ELAARYLERKGYRILERNWRCRRGEIDIIARD--GDTLVFVE 43 (93)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTEEEEEEEEE--TTEEEEEE
T ss_pred HHHHHHHHHCCCEEeeeeecCCCCcEeEEEEE--cccEEEEE
Confidence 35678889999999977666666644444555 55555554
No 170
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=44.32 E-value=67 Score=19.00 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=24.4
Q ss_pred CCCCeEEEEEECCHHHHHHHHHH-CCCeecc
Q 045980 64 QRQPIEVCFAYADVDAAYKRAVE-NGAVPVS 93 (125)
Q Consensus 64 ~~~~~~~~~~v~d~~~~~~~~~~-~g~~~~~ 93 (125)
.....|+.+.|.|++++.+...+ .|.++..
T Consensus 15 ~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~ 45 (150)
T TIGR00068 15 KRRLLHTMLRVGDLDKSLDFYTEVLGMKLLR 45 (150)
T ss_pred CceEEEEEEEecCHHHHHHHHHHhcCCEEEE
Confidence 44678999999999999998865 7887643
No 171
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.02 E-value=33 Score=17.21 Aligned_cols=17 Identities=24% Similarity=0.100 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHCCCee
Q 045980 75 ADVDAAYKRAVENGAVP 91 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~ 91 (125)
+|.+++.+.|+++|+++
T Consensus 53 ~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 53 EDRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHHcCCcC
Confidence 56788999999999763
No 172
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=43.69 E-value=59 Score=20.69 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVV 115 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~i 115 (125)
.|++.+.+.|.+.|.+++..-.-..+| +..+|.--.|..+
T Consensus 112 rNi~~a~~~L~~~gI~i~a~DvGG~~g-R~v~f~~~tG~v~ 151 (184)
T PRK13497 112 QNAAFAMQFLRDEGIPVVGSSTGGEHG-RKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCC-cEEEEECCCCeEE
Confidence 678999999999999988665545566 5555555556664
No 173
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=43.13 E-value=46 Score=18.80 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHCCCe
Q 045980 75 ADVDAAYKRAVENGAV 90 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~ 90 (125)
+|+.++..++.+.|+.
T Consensus 21 ~d~~~L~~~lt~~GF~ 36 (96)
T PF11080_consen 21 TDINELNNHLTRAGFS 36 (96)
T ss_pred HHHHHHHHHHHhcCce
Confidence 5678888888888865
No 174
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=43.07 E-value=27 Score=22.76 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=10.2
Q ss_pred CCCCcEEEEEeCCCCC
Q 045980 98 KEWGQKVGYVRDINGI 113 (125)
Q Consensus 98 ~~~g~~~~~~~Dp~G~ 113 (125)
..+| ...|-.||.||
T Consensus 141 ~~~g-yqLy~SdPSGn 155 (249)
T KOG0178|consen 141 DRYG-YQLYQSDPSGN 155 (249)
T ss_pred cCcc-eEEEecCCCCC
Confidence 3344 67778888887
No 175
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=42.80 E-value=40 Score=16.82 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=12.9
Q ss_pred CCcEEEEEeCCCCCEEEEee
Q 045980 100 WGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 100 ~g~~~~~~~Dp~G~~iel~~ 119 (125)
|-...|.|.|++|+++.+.-
T Consensus 7 WLns~F~FYDen~~lVrv~v 26 (54)
T PF12142_consen 7 WLNSSFLFYDENGQLVRVKV 26 (54)
T ss_dssp HHT-EEEEE-TTS-EEEEEG
T ss_pred cccCeeEEECCCCCEEEEEh
Confidence 33367899999999998754
No 176
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=42.38 E-value=74 Score=18.92 Aligned_cols=56 Identities=9% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCeEEEEEECCHHHHHHHHHHCCCe--eccCCcc---CCCCc---------------EEEEEeCCCCCEEEEeeec
Q 045980 66 QPIEVCFAYADVDAAYKRAVENGAV--PVSEPED---KEWGQ---------------KVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~~g~~--~~~~~~~---~~~g~---------------~~~~~~Dp~G~~iel~~~~ 121 (125)
+..-+.+.+++.+++.+.+.+.|.. ++..+.. ..+|. ...++.||+|.++..+...
T Consensus 64 ~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~ 139 (154)
T PRK09437 64 GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKF 139 (154)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCC
Confidence 4445677777777777777776653 3333321 11221 3568999999999887643
No 177
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=42.16 E-value=56 Score=22.58 Aligned_cols=28 Identities=18% Similarity=-0.025 Sum_probs=20.6
Q ss_pred CCCeEEEEEE------CCHHHHHHHHHHCCCeec
Q 045980 65 RQPIEVCFAY------ADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 65 ~~~~~~~~~v------~d~~~~~~~~~~~g~~~~ 92 (125)
...-|+.+.| .|++++.+.++++|.++.
T Consensus 183 ~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 183 YHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp CS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 3556899999 999999999999999877
No 178
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=41.29 E-value=71 Score=18.43 Aligned_cols=57 Identities=21% Similarity=0.343 Sum_probs=34.9
Q ss_pred CCeEEEEEECCHHHHHHHHHHCCC--eeccCCcc---CCCCc------------EEEEEeCCCCCEEEEeeecc
Q 045980 66 QPIEVCFAYADVDAAYKRAVENGA--VPVSEPED---KEWGQ------------KVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~~g~--~~~~~~~~---~~~g~------------~~~~~~Dp~G~~iel~~~~~ 122 (125)
+..-+.+.+++.+++.+.+.+.+. .++..+.. ..+|. ...++.|++|.+........
T Consensus 57 ~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~ 130 (140)
T cd03017 57 GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK 130 (140)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCC
Confidence 445567777887777776666664 33433321 11221 36799999999887765443
No 179
>COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=40.49 E-value=76 Score=18.53 Aligned_cols=41 Identities=20% Similarity=0.089 Sum_probs=29.9
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+.+...|++.|..++..-....+|.--.-.+| |-.+.+++-
T Consensus 10 ~~A~~~L~~~G~~il~rN~r~r~GEIDlIa~~--~~~ivFVEV 50 (114)
T COG0792 10 DLAARFLESKGLRILARNWRCRYGEIDLIARD--GDTVVFVEV 50 (114)
T ss_pred HHHHHHHHHcCcchhhhhccCCCCceEEEEec--CCEEEEEEE
Confidence 35678899999999987777778855555555 666666554
No 180
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=40.29 E-value=81 Score=20.42 Aligned_cols=41 Identities=12% Similarity=0.009 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVR 116 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~ie 116 (125)
.|++.+.+.|.+.|.+++..-.-..+| +..+|.--.|..+.
T Consensus 115 rNie~a~~~L~~~GI~ivaeDvGG~~g-RkI~f~~~tG~v~v 155 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAHSLGGNRA-RRIRFWPKTGRVQQ 155 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCC-cEEEEECCCCEEEE
Confidence 578899999999999988665544556 66666666676654
No 181
>PRK14707 hypothetical protein; Provisional
Probab=40.07 E-value=49 Score=29.43 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHCCCeeccC---Ccc--CCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 76 DVDAAYKRAVENGAVPVSE---PED--KEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~---~~~--~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
.+..+...|.+.|...+.- ... ..|..-...++||+|..|||--..+
T Consensus 2357 ~~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGINvtL~~pdG~~FEIQFHT~ 2408 (2710)
T PRK14707 2357 GLRAVLAALDDQGHARVKLTNQFTEYSPSFKAINLTLRSPEGALWEIQFHTP 2408 (2710)
T ss_pred HHHHHHHHHHHcCCeEEEEeecccCCCCCccceEEEEEcCCCcEEEEEeccH
Confidence 3456677778899875421 111 2344466688999999999976543
No 182
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=40.06 E-value=74 Score=19.65 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVV 115 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~i 115 (125)
.|++.+.+.|.+.|.+++.+-.-..++ +..+|.--.|..+
T Consensus 107 rNi~~a~~~L~~~gi~i~a~dvGG~~g-R~i~f~~~tG~v~ 146 (157)
T PRK13488 107 RNIESAKETLKKLGIRIVAEDVGGDYG-RTVKFDLKTGKVI 146 (157)
T ss_pred HHHHHHHHHHHHCCCcEEEEEcCCCCC-cEEEEECCCCEEE
Confidence 678999999999999988665544455 5555555555543
No 183
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=39.58 E-value=71 Score=20.89 Aligned_cols=40 Identities=10% Similarity=-0.041 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVV 115 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~i 115 (125)
.|++.+.+.|.+.|.+++..-.-..+| +..+|.--.|..+
T Consensus 139 rNi~~a~~~L~~~gI~Iva~DvGG~~g-Rki~f~~~tG~v~ 178 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQDLGGAQP-RKLLFDPQTGQAW 178 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCC-cEEEEECCCCEEE
Confidence 578899999999999988665555566 5555554455544
No 184
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=39.16 E-value=76 Score=19.79 Aligned_cols=40 Identities=15% Similarity=0.048 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVV 115 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~i 115 (125)
.|++.+.+.|.+.|.+++.+-.-...| +..+|.--.|..+
T Consensus 114 rNv~~a~~~L~~~gI~i~a~DvGG~~g-R~i~f~~~tG~v~ 153 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAKDFDQSKS-RKIFVFPENFKVI 153 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCC-cEEEEECCCCEEE
Confidence 678899999999999988665444455 5666655556554
No 185
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.93 E-value=52 Score=16.18 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=17.6
Q ss_pred eEEEEEECC---HHHHHHHHHHCCCeec
Q 045980 68 IEVCFAYAD---VDAAYKRAVENGAVPV 92 (125)
Q Consensus 68 ~~~~~~v~d---~~~~~~~~~~~g~~~~ 92 (125)
+.+.+.+.+ ++.+.+.+.+.|.++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 445556554 4588999999998764
No 186
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=38.48 E-value=22 Score=17.86 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=13.5
Q ss_pred cCHHHHHHHHHHhcCCe
Q 045980 4 TDVAKSVAFYAKAFDYT 20 (125)
Q Consensus 4 ~d~~~a~~FY~~~lg~~ 20 (125)
+-++..++||.+.|-|.
T Consensus 41 k~Pq~vI~FYE~~l~f~ 57 (58)
T PF01393_consen 41 KCPQKVIKFYESHLVFK 57 (58)
T ss_dssp HSHHHHHHHHHHTCEEE
T ss_pred HCcHHHHHHHHHHeeec
Confidence 45788999999987664
No 187
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=38.21 E-value=81 Score=22.85 Aligned_cols=38 Identities=16% Similarity=0.015 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCeeccCCccCCCCc--EEEEEeCCCCCE
Q 045980 77 VDAAYKRAVENGAVPVSEPEDKEWGQ--KVGYVRDINGIV 114 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~g~--~~~~~~Dp~G~~ 114 (125)
++.+.+++.+.|+++........+.. ..+.+..++|-.
T Consensus 114 v~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~ 153 (408)
T COG2081 114 VDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGET 153 (408)
T ss_pred HHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCE
Confidence 78899999999999987765544322 468888888863
No 188
>PRK14681 hypothetical protein; Provisional
Probab=38.13 E-value=99 Score=19.18 Aligned_cols=40 Identities=13% Similarity=-0.049 Sum_probs=27.4
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
.+.+.|++.|+.++..-....+|.--....|.+| .+.+++
T Consensus 52 ~Aa~~L~~~Gy~IL~rN~R~~~GEIDIIa~d~~~-~LVFVE 91 (158)
T PRK14681 52 YAAAWLEEHGWTTLSRNWHCRYGELDIVALNPEY-TIVFVE 91 (158)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCCcEEEEEEcCCc-eEEEEE
Confidence 4567788999999977666667755566666644 444544
No 189
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=37.82 E-value=31 Score=19.83 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=12.1
Q ss_pred EEEEEeCCCCCEEE
Q 045980 103 KVGYVRDINGIVVR 116 (125)
Q Consensus 103 ~~~~~~Dp~G~~ie 116 (125)
.-+.++|++|+++-
T Consensus 19 ~RARlyd~dG~Ll~ 32 (112)
T PF13756_consen 19 TRARLYDPDGNLLA 32 (112)
T ss_pred ceEEEECCCCCEEe
Confidence 67899999999874
No 190
>PHA02097 hypothetical protein
Probab=37.58 E-value=42 Score=16.45 Aligned_cols=14 Identities=21% Similarity=0.059 Sum_probs=10.7
Q ss_pred EEeCCCCCEEEEee
Q 045980 106 YVRDINGIVVRMGS 119 (125)
Q Consensus 106 ~~~Dp~G~~iel~~ 119 (125)
.+.||.||-++++.
T Consensus 45 vv~~~n~ng~~~~h 58 (59)
T PHA02097 45 VVKDANYNGFELVH 58 (59)
T ss_pred EEecCCCCcEEEec
Confidence 57788888888764
No 191
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=37.33 E-value=75 Score=22.38 Aligned_cols=99 Identities=11% Similarity=0.041 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHHHHHHHH
Q 045980 5 DVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAAYKRA 84 (125)
Q Consensus 5 d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~ 84 (125)
-++++++|=.+-||+.....- ..++.+..+-..-.+...+... -.....-.|-- |+....=.|.-.+..+..+.|
T Consensus 54 ~~~~iR~FA~~~L~Lpdn~sY--~~YadL~Rp~vvWnV~Aap~~s--l~~~~WcFPi~-Gcv~YrGyF~~~~A~~~a~~L 128 (337)
T PF10023_consen 54 LAQQIRRFASEELGLPDNGSY--RSYADLDRPYVVWNVFAAPEFS--LEPKTWCFPIV-GCVPYRGYFDEADARAEAAEL 128 (337)
T ss_pred HHHHHHHHHHHhcCCCCCCCh--hhhhhcCCCcEEEEEEecCccc--CCcceeecccc-ccccccCcCCHHHHHHHHHHH
Confidence 357888999999999764321 1223333222222222111100 00000111100 222223345557888899999
Q ss_pred HHCCCeeccCCccCCCCcEEEEEeCC
Q 045980 85 VENGAVPVSEPEDKEWGQKVGYVRDI 110 (125)
Q Consensus 85 ~~~g~~~~~~~~~~~~g~~~~~~~Dp 110 (125)
++.|..+-..+... |. +-.||.||
T Consensus 129 ~~~GlDv~v~gV~A-YS-TLGwF~DP 152 (337)
T PF10023_consen 129 RAQGLDVYVGGVPA-YS-TLGWFDDP 152 (337)
T ss_pred HHcCCceeEecccc-cc-cccccCCc
Confidence 99998865554432 33 45577777
No 192
>PRK05443 polyphosphate kinase; Provisional
Probab=37.30 E-value=1.2e+02 Score=23.76 Aligned_cols=45 Identities=18% Similarity=-0.004 Sum_probs=26.3
Q ss_pred HHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeeccCC
Q 045980 80 AYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQAS 124 (125)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~~~ 124 (125)
+.++|+++|+.++..........+.+.+.+-+|..+.-+....+|
T Consensus 414 ~~~~L~~aGv~V~y~~~~~k~HaK~~lid~~e~~~~~~~~~iGTg 458 (691)
T PRK05443 414 WARRLEEAGVHVVYGVVGLKTHAKLALVVRREGGGLRRYVHLGTG 458 (691)
T ss_pred HHHHHHHcCCEEEEccCCccceeEEEEEEeecCCceeEEEEEcCC
Confidence 455666677776544333233346677777777776666655544
No 193
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=37.05 E-value=50 Score=15.87 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=13.2
Q ss_pred CcEEEEEeCCCCCEEEEee
Q 045980 101 GQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 101 g~~~~~~~Dp~G~~iel~~ 119 (125)
|.+.+.+++.+|.+|---+
T Consensus 4 g~~~f~L~a~ng~viasse 22 (49)
T PF07411_consen 4 GQFRFRLKAGNGEVIASSE 22 (49)
T ss_dssp SEEEEEEE-TTS-EEEEBE
T ss_pred CCEEEEEEcCCCCEEEecC
Confidence 5678899999999987433
No 194
>PRK12497 hypothetical protein; Reviewed
Probab=36.70 E-value=88 Score=18.18 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+.+.+.|.+.|..++..-...++|.--.-..| |..+.+++-
T Consensus 14 ~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~--~~~lvFVEV 54 (119)
T PRK12497 14 DLAARYLESKGLRILARNFRCRFGEIDLIARD--GDTLVFVEV 54 (119)
T ss_pred HHHHHHHHHCCCEEEcceecCCCCcEeeeEEe--CCEEEEEEE
Confidence 34677788999999977666667754445555 556666654
No 195
>PRK04247 hypothetical protein; Provisional
Probab=36.17 E-value=90 Score=20.82 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=24.7
Q ss_pred HHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEE
Q 045980 84 AVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRM 117 (125)
Q Consensus 84 ~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel 117 (125)
+++.|..++........|.--...+|++|+.+-+
T Consensus 143 li~~G~~~l~rE~~t~~G~IDila~D~~G~lViV 176 (238)
T PRK04247 143 LIEEGFRPLAREYPTPAGIIDILGRDKDGNLVVL 176 (238)
T ss_pred HHcCCCEEEEEecccCCCceeEEEECCCCCEEEE
Confidence 3456888776655566787788999999976443
No 196
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=36.09 E-value=1.4e+02 Score=20.43 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=34.2
Q ss_pred CCeEEEEEECC----HHHHHHHHHHCCCe---eccCCccCCCCcEEEEEeCCCCCEE
Q 045980 66 QPIEVCFAYAD----VDAAYKRAVENGAV---PVSEPEDKEWGQKVGYVRDINGIVV 115 (125)
Q Consensus 66 ~~~~~~~~v~d----~~~~~~~~~~~g~~---~~~~~~~~~~g~~~~~~~Dp~G~~i 115 (125)
....+.|.+.| +.+++.-+..+|.. +.+.|....-| .++++.|=+|+.=
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~-~Y~F~iD~eg~~~ 248 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLG-EYLFFIDIEGHID 248 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCe-eEEEEEEEecCcC
Confidence 45778888875 56677777788874 56777665444 6777778777753
No 197
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=35.87 E-value=84 Score=19.48 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=38.4
Q ss_pred CCCeEEEEEECCHHHHHHHHHHCCCe--eccCCcc------------CCC------CcEEEEEeCCCCCEEEEeee
Q 045980 65 RQPIEVCFAYADVDAAYKRAVENGAV--PVSEPED------------KEW------GQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 65 ~~~~~~~~~v~d~~~~~~~~~~~g~~--~~~~~~~------------~~~------g~~~~~~~Dp~G~~iel~~~ 120 (125)
.+...+.+.+++.....+...+.|.+ .++.+.. ..+ -.++.|+.|++|.+..++..
T Consensus 63 ~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~ 138 (157)
T COG1225 63 LGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRK 138 (157)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecC
Confidence 36677888888888887777777764 3333321 111 12688999999999998843
No 198
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=35.70 E-value=90 Score=20.20 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVV 115 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~i 115 (125)
.|++.+.+.|.+.|.+++..-.-..+| +..+|.--.|..+
T Consensus 127 rNi~~a~~~L~~~gI~iva~DvGG~~g-R~v~f~~~tG~v~ 166 (201)
T PRK13487 127 RNAEFVRDYLQTERIPIVAEDLLDIYP-RKVYFFPTTGKVL 166 (201)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCC-cEEEEECCCCEEE
Confidence 678999999999999988665545556 5555555556554
No 199
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.65 E-value=69 Score=16.63 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=21.0
Q ss_pred CeEEEEEECCHHHHHHHHHHCCCeec
Q 045980 67 PIEVCFAYADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 67 ~~~~~~~v~d~~~~~~~~~~~g~~~~ 92 (125)
.+.+.+..+|.+.+.+.+.+.|+.+.
T Consensus 42 G~al~~~~~d~~~i~~~l~~~~i~~~ 67 (73)
T PF11823_consen 42 GLALRFEPEDLEKIKEILEENGIEYE 67 (73)
T ss_pred CEEEEEChhhHHHHHHHHHHCCCCee
Confidence 35677777899999999999998764
No 200
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=35.34 E-value=12 Score=15.46 Aligned_cols=8 Identities=38% Similarity=0.953 Sum_probs=5.2
Q ss_pred HHHHHhcCC
Q 045980 11 AFYAKAFDY 19 (125)
Q Consensus 11 ~FY~~~lg~ 19 (125)
+||+ .|||
T Consensus 21 df~~-l~gf 28 (28)
T PRK14751 21 DFYA-LLGF 28 (28)
T ss_pred eehh-hhcC
Confidence 5777 5665
No 201
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=35.23 E-value=1.3e+02 Score=20.82 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=33.4
Q ss_pred eEEEEEECC-HHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 68 IEVCFAYAD-VDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 68 ~~~~~~v~d-~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
..|+..|+| +..+.+-|++....+..-|....-+ ++..+..++|+.+|+.+...
T Consensus 159 ~aiS~evdDsl~~il~lLr~~D~sFrpvPh~~d~a-k~~~fqn~~~y~VefLTtnr 213 (349)
T COG5397 159 YAISREVDDSLPPILDLLRSVDPSFRPVPHRSDPA-KSSAFQNRDGYRVEFLTTNR 213 (349)
T ss_pred hhhhHHhcccccHHHHHHhccCcccccCCccCCCc-cceeeecCCCeEEEEeccCc
Confidence 344555644 5566666665555544444333334 55566999999999998543
No 202
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=35.19 E-value=74 Score=21.93 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHCCCeec
Q 045980 75 ADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~ 92 (125)
.+++.+++|+.+.|...+
T Consensus 17 ~nl~~l~~ri~~~~~~tV 34 (294)
T PF14883_consen 17 RNLDKLIQRIKDMGINTV 34 (294)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 578999999999998644
No 203
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=34.96 E-value=62 Score=19.32 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.1
Q ss_pred EEEEeCCCCCEEEEeeec
Q 045980 104 VGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 104 ~~~~~Dp~G~~iel~~~~ 121 (125)
..|+.|++|.++......
T Consensus 122 ~tflID~~G~v~~~~~g~ 139 (153)
T TIGR02540 122 WKYLVNPEGQVVKFWRPE 139 (153)
T ss_pred EEEEEcCCCcEEEEECCC
Confidence 489999999999887653
No 204
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=34.39 E-value=65 Score=20.85 Aligned_cols=41 Identities=12% Similarity=0.078 Sum_probs=27.3
Q ss_pred EEEECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEe
Q 045980 71 CFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 71 ~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~ 118 (125)
++.-+..+++.++|.++|++-+- ...-..+.-|+|..++-+
T Consensus 153 tVPa~~AQ~vad~Lv~aGVkGIl-------NFtPv~l~~pe~V~V~~i 193 (211)
T COG2344 153 TVPAEHAQEVADRLVKAGVKGIL-------NFTPVRLQVPEGVIVENI 193 (211)
T ss_pred EccHHHHHHHHHHHHHcCCceEE-------eccceEecCCCCcEEEEe
Confidence 33345677888888888887552 224456778888777643
No 205
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=34.10 E-value=44 Score=13.93 Aligned_cols=13 Identities=38% Similarity=0.790 Sum_probs=10.8
Q ss_pred cCHHHHHHHHHHh
Q 045980 4 TDVAKSVAFYAKA 16 (125)
Q Consensus 4 ~d~~~a~~FY~~~ 16 (125)
+|..++..||++.
T Consensus 19 ~d~~~A~~~~~~A 31 (36)
T smart00671 19 KDLEKALEYYKKA 31 (36)
T ss_pred cCHHHHHHHHHHH
Confidence 5889999999864
No 206
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=33.58 E-value=90 Score=17.35 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=15.6
Q ss_pred CCCCeEEEEE--ECC---HHHHHHHHHHCC
Q 045980 64 QRQPIEVCFA--YAD---VDAAYKRAVENG 88 (125)
Q Consensus 64 ~~~~~~~~~~--v~d---~~~~~~~~~~~g 88 (125)
.+...++.+. ..| ++++++.|.+.+
T Consensus 55 kGnY~svsI~i~A~~~EQ~e~ly~eL~~~~ 84 (90)
T COG2921 55 KGNYLSVSITIRATNIEQVEALYRELRKHE 84 (90)
T ss_pred CCceEEEEEEEEECCHHHHHHHHHHHhhCC
Confidence 4555555554 444 567788887765
No 207
>KOG2465 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.29 E-value=36 Score=23.57 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=19.7
Q ss_pred CCeEEEEEECCHHHHHHHHHHCCCe
Q 045980 66 QPIEVCFAYADVDAAYKRAVENGAV 90 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~~g~~ 90 (125)
...+|||.|+|.++.+.-+.-..++
T Consensus 168 tYP~icFavD~FdevF~dvvvrDge 192 (390)
T KOG2465|consen 168 TYPEICFAVDDFDEVFDDVVVRDGE 192 (390)
T ss_pred ccceEEEEecCHHHhhhhhEEecCc
Confidence 6789999999999999876544433
No 208
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=33.06 E-value=1.2e+02 Score=18.58 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHCCCeeccCC--ccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 75 ADVDAAYKRAVENGAVPVSEP--EDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~--~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
.++..+.+.|...+..-.... ...||| ++-.+.+.+++.+..+.-.+
T Consensus 24 q~vK~~v~~lk~~~~~E~~~~~~~~rpWG-~~~~l~~~~~~~vkri~V~p 72 (151)
T PF01050_consen 24 QDVKEVVEQLKQKGRYEAKEHRRVYRPWG-SYEVLDEGEGYKVKRITVNP 72 (151)
T ss_pred hhhHHHHHhhhcccccccccceeEecCCc-EEEEEEccCCEEEEEEEEcC
Confidence 567888888877765422211 237899 66666677788777665443
No 209
>COG1637 Predicted nuclease of the RecB family [DNA replication, recombination, and repair]
Probab=32.94 E-value=1e+02 Score=20.76 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=27.7
Q ss_pred HHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEE
Q 045980 83 RAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRM 117 (125)
Q Consensus 83 ~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel 117 (125)
.+++.|+.++......+.|.--++-+|.+|+.+-|
T Consensus 143 ~lleeG~~~v~~E~~t~~G~vDilg~De~G~~vii 177 (253)
T COG1637 143 QLLEEGFRPVAREYQTAIGKVDILGRDERGNIVII 177 (253)
T ss_pred hhHhCcceeeeeeeecCcceeEEEEEcCCCCEEEE
Confidence 45668888887777777887888999999998544
No 210
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=32.79 E-value=78 Score=19.79 Aligned_cols=19 Identities=16% Similarity=0.081 Sum_probs=8.3
Q ss_pred ECCHHHHHHHHHHCCCeec
Q 045980 74 YADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 74 v~d~~~~~~~~~~~g~~~~ 92 (125)
+++.+++.+.+.+.|++.+
T Consensus 14 i~~~~~l~~a~~~iG~P~v 32 (172)
T PF02222_consen 14 IDSLEDLEEAAESIGFPAV 32 (172)
T ss_dssp ESSHHHHHHHHHHHTSSEE
T ss_pred ECCHHHHHHHHHHcCCCEE
Confidence 3444444444444444433
No 211
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=32.18 E-value=24 Score=25.11 Aligned_cols=19 Identities=32% Similarity=0.714 Sum_probs=14.0
Q ss_pred CCCCcEEEEEeCCCCCEEE
Q 045980 98 KEWGQKVGYVRDINGIVVR 116 (125)
Q Consensus 98 ~~~g~~~~~~~Dp~G~~ie 116 (125)
..|..+.+|+.||+|..|.
T Consensus 19 ~EWnir~A~I~~~~G~~Iv 37 (386)
T PF09940_consen 19 KEWNIRDAYIKDPDGERIV 37 (386)
T ss_dssp -EEEEEEEEEE-TTS-EEE
T ss_pred CceEEeEEEEECCCCCEEE
Confidence 4578899999999999885
No 212
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=32.10 E-value=1.1e+02 Score=19.35 Aligned_cols=28 Identities=14% Similarity=0.043 Sum_probs=21.3
Q ss_pred CCeEEEEEECCHHHHHHHHHHCCCeecc
Q 045980 66 QPIEVCFAYADVDAAYKRAVENGAVPVS 93 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~~g~~~~~ 93 (125)
.-+.+.+..++-+++.+.|.+.|+.+..
T Consensus 43 ~DiDi~~~~~~~~~l~~~L~~~G~~ite 70 (174)
T PF10706_consen 43 RDIDIFVPREDQAELRALLKELGYRITE 70 (174)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHTT-EEEE
T ss_pred CCeEEEEEcchhHHHHHHHHHCCCEEEE
Confidence 3356667779999999999999997653
No 213
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=31.83 E-value=30 Score=23.38 Aligned_cols=19 Identities=21% Similarity=0.072 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCEEEEeeec
Q 045980 103 KVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 103 ~~~~~~Dp~G~~iel~~~~ 121 (125)
-.+|+.||+|..+..+-..
T Consensus 243 i~mYLidPeg~Fvd~~GrN 261 (280)
T KOG2792|consen 243 IFMYLIDPEGEFVDYYGRN 261 (280)
T ss_pred EEEEEECCCcceehhhccc
Confidence 5789999999998876543
No 214
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.66 E-value=1.1e+02 Score=20.30 Aligned_cols=40 Identities=8% Similarity=-0.099 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVV 115 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~i 115 (125)
.|++.+.+.|.+.|++++.+-.-..+| +.++|.--.|..+
T Consensus 125 RNieaa~~~L~~~gI~IvaeDvGG~~g-RkV~f~~~TG~v~ 164 (233)
T PRK13489 125 RNADFVRRYLALERIRITAEDLQGVHP-RKVAFMPRTGRAM 164 (233)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCC-cEEEEECCCCEEE
Confidence 578899999999999988665555566 5555544445554
No 215
>PHA02978 hypothetical protein; Provisional
Probab=31.64 E-value=62 Score=18.63 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=15.0
Q ss_pred EEEEEeCCCCCEEEEeeec
Q 045980 103 KVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 103 ~~~~~~Dp~G~~iel~~~~ 121 (125)
-++...||+|..+++.++.
T Consensus 75 iy~sy~~~~gisiqvst~~ 93 (135)
T PHA02978 75 IYFSYADPDGISIQVSTPK 93 (135)
T ss_pred EEEEecCCCceEEEEeCCC
Confidence 3567789999999987764
No 216
>PRK14676 hypothetical protein; Provisional
Probab=31.48 E-value=1.1e+02 Score=17.81 Aligned_cols=42 Identities=14% Similarity=-0.023 Sum_probs=28.7
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+.+.+.|.+.|..++..-...++|.--.-.+| |..+.+++-.
T Consensus 15 ~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~--~~~lVFVEVK 56 (117)
T PRK14676 15 EAVARIYDRSGRPVAARRWRGVSGEIDLIARE--GAEVIFIEVK 56 (117)
T ss_pred HHHHHHHHHCCCEEeeeecCCCCCeEEEEEee--CCEEEEEEEe
Confidence 35677889999999977666667744444444 5577776644
No 217
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.22 E-value=50 Score=20.74 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCeEEee
Q 045980 8 KSVAFYAKAFDYTVRTL 24 (125)
Q Consensus 8 ~a~~FY~~~lg~~~~~~ 24 (125)
-+.+||++.+||-+.++
T Consensus 83 LTTAFfRDAMGFlLiFD 99 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFD 99 (219)
T ss_pred HHHHHHHhhccceEEEe
Confidence 36789999999988765
No 218
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=31.01 E-value=36 Score=18.74 Aligned_cols=30 Identities=13% Similarity=0.005 Sum_probs=21.1
Q ss_pred CCCeEEEEEECC---HHHHHHHHHHCCCeeccC
Q 045980 65 RQPIEVCFAYAD---VDAAYKRAVENGAVPVSE 94 (125)
Q Consensus 65 ~~~~~~~~~v~d---~~~~~~~~~~~g~~~~~~ 94 (125)
.+.+.+.|.+++ ++++.++|.+.|++....
T Consensus 49 ~a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dl 81 (91)
T PF00585_consen 49 FARVLVGIEVPDAEDLEELIERLKALGYPYEDL 81 (91)
T ss_dssp CSEEEEEEE-SSTHHHHHHHHHHTSSS-EEECT
T ss_pred eeeEEEEEEeCCHHHHHHHHHHHHHcCCCeEEC
Confidence 366788888854 577899999999887643
No 219
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=30.74 E-value=88 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCC
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGI 113 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~ 113 (125)
.+++.+++|+.+.|+..+ .---|.||+|+
T Consensus 334 ~nl~~l~~ri~~~~~~~V----------yLqafadp~gd 362 (672)
T PRK14581 334 ENLDKLVQRISDLRVTHV----------FLQAFSDPKGD 362 (672)
T ss_pred hhHHHHHHHHHhcCCCEE----------EEEeeeCCCCC
Confidence 468889999999998755 23346788755
No 220
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=30.69 E-value=51 Score=13.62 Aligned_cols=16 Identities=19% Similarity=0.607 Sum_probs=11.5
Q ss_pred cCHHHHHHHHHHhcCC
Q 045980 4 TDVAKSVAFYAKAFDY 19 (125)
Q Consensus 4 ~d~~~a~~FY~~~lg~ 19 (125)
.+.++|...|.+++-.
T Consensus 15 ~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 15 GDYEEALEYYQRALEL 30 (34)
T ss_dssp T-HHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHH
Confidence 5778889999887643
No 221
>PF11520 Cren7: Chromatin protein Cren7; InterPro: IPR020906 Cren7 is a chromatin protein found in Crenarchaeota and has a higher affinity for double-stranded DNA than for single-stranded DNA. The protein contains negative DNA supercoils and is associated with genomic DNA in vivo. Cren7 interacts with duplex DNA through a beta-sheet and a long flexible loop. Its binding to double-stranded DNA is without sequence specificity. There is approximately 1 Cren7 molecule for 12 bp of DNA. The function of Cren7 has not been completely determined but it is thought that the protein may have a role similar to that of archaeal proteins in Euryarchaea [].; GO: 0003690 double-stranded DNA binding, 0005737 cytoplasm; PDB: 3KXT_A 3LWH_A 3LWI_A 2JTM_A.
Probab=30.48 E-value=75 Score=16.12 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=8.9
Q ss_pred CcEEEEEeCCC-CCEEE
Q 045980 101 GQKVGYVRDIN-GIVVR 116 (125)
Q Consensus 101 g~~~~~~~Dp~-G~~ie 116 (125)
|.....|+||+ |..+.
T Consensus 36 GV~igLFk~P~tGk~fR 52 (60)
T PF11520_consen 36 GVKIGLFKDPETGKYFR 52 (60)
T ss_dssp -EEEEEEE-TTT--EEE
T ss_pred ceEEEEEeCCCCCcchh
Confidence 45677889998 87765
No 222
>PRK00907 hypothetical protein; Provisional
Probab=30.25 E-value=84 Score=17.52 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=17.9
Q ss_pred CCCCeEEEEEE-----CCHHHHHHHHHHCCC
Q 045980 64 QRQPIEVCFAY-----ADVDAAYKRAVENGA 89 (125)
Q Consensus 64 ~~~~~~~~~~v-----~d~~~~~~~~~~~g~ 89 (125)
.+..+++.+.+ +.++++|+.|.+.+.
T Consensus 57 ~GkY~Svtv~i~ats~eQld~iY~~L~~~~~ 87 (92)
T PRK00907 57 SGKYVSVRIGFRAESREQYDAAHQALRDHPE 87 (92)
T ss_pred CCEEEEEEEEEEECCHHHHHHHHHHHhhCCC
Confidence 45666666654 468889999987663
No 223
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=29.96 E-value=76 Score=19.73 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCC
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKE 99 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~ 99 (125)
+.+++++++....|..|+.-|.+..
T Consensus 44 egLe~Ly~ky~~~Gf~VLgFPcNQF 68 (162)
T COG0386 44 EGLEALYKKYKDKGFEVLGFPCNQF 68 (162)
T ss_pred HHHHHHHHHHhhCCcEEEecccccc
Confidence 5789999999999999998887644
No 224
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=29.42 E-value=46 Score=16.19 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=8.7
Q ss_pred HHHHHHHHHhcC
Q 045980 7 AKSVAFYAKAFD 18 (125)
Q Consensus 7 ~~a~~FY~~~lg 18 (125)
++++.||.+.|-
T Consensus 16 q~sve~yk~kl~ 27 (57)
T PF04761_consen 16 QESVEFYKEKLS 27 (57)
T ss_pred HHHHHHHHHHHH
Confidence 567888887664
No 225
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=29.39 E-value=58 Score=21.36 Aligned_cols=44 Identities=7% Similarity=-0.145 Sum_probs=25.4
Q ss_pred EEEECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEe
Q 045980 71 CFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 71 ~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~ 118 (125)
+|+..|.+.+++-+ .|..+..-+.. .+...|+++||+||-..++
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPSK--QPVLLFNVKQPSSYSCMLC 226 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeecccc--cceEEEEeeCCCccchhhc
Confidence 33445666666633 34443322221 1347889999999987665
No 226
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=29.06 E-value=57 Score=18.50 Aligned_cols=17 Identities=12% Similarity=0.470 Sum_probs=13.7
Q ss_pred ecCHHHHHHHHHHhcCCe
Q 045980 3 VTDVAKSVAFYAKAFDYT 20 (125)
Q Consensus 3 v~d~~~a~~FY~~~lg~~ 20 (125)
.+++.++.+||.+ +||=
T Consensus 34 ~~~~~~~L~YY~~-igWI 50 (99)
T PF04659_consen 34 HNNAADALDYYES-IGWI 50 (99)
T ss_pred cccHHHHHHHHHH-cCCc
Confidence 4678899999996 7883
No 227
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=28.64 E-value=40 Score=14.82 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=12.7
Q ss_pred EEeCCCCCEEEEeeecc
Q 045980 106 YVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 106 ~~~Dp~G~~iel~~~~~ 122 (125)
.+.|-+|+.|.|....+
T Consensus 14 ~l~Dv~G~~Inl~~dFe 30 (32)
T PF10813_consen 14 PLKDVKGNPINLYKDFE 30 (32)
T ss_pred cccccCCCEEechhccc
Confidence 47788899998876543
No 228
>PRK14686 hypothetical protein; Provisional
Probab=28.58 E-value=1.3e+02 Score=17.57 Aligned_cols=42 Identities=10% Similarity=-0.027 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+.+...|.+.|+.++..-....+|.--... -+|..+.+++-.
T Consensus 13 ~~A~~~L~~~Gy~il~rN~r~~~GEIDlIa--~~~~~lvFVEVK 54 (119)
T PRK14686 13 DLAVEFLIKKGYTILERNYRFQKAEIDIIA--QKGNILVIVEVK 54 (119)
T ss_pred HHHHHHHHHCCCEEEEEEecCCCCcEEEEE--CcCCEEEEEEEE
Confidence 346777889999999776666666433333 346777777654
No 229
>PRK14679 hypothetical protein; Provisional
Probab=28.57 E-value=1.4e+02 Score=17.83 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+.+.+.|.+.|+.++..-....+|.--...+| |..+.|++-.
T Consensus 23 ~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~--~~~lVFVEVK 64 (128)
T PRK14679 23 GLALLALMLKGYRPLARRFAAAGGEIDLIVRR--GRTIAFVEVK 64 (128)
T ss_pred HHHHHHHHHCCCEEEeeeccCCCCeEEEEEEe--CCEEEEEEEE
Confidence 34677889999999977666667744444444 5677776644
No 230
>PF10061 DUF2299: Uncharacterized conserved protein (DUF2299); InterPro: IPR018747 Members of this family of hypothetical bacterial proteins have no known function. ; PDB: 3CXJ_D.
Probab=27.96 E-value=1.4e+02 Score=17.96 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=25.9
Q ss_pred HHHHHHHCCCeeccCCccCCCCcEEEEEeCCC-CCEEEEeeeccC
Q 045980 80 AYKRAVENGAVPVSEPEDKEWGQKVGYVRDIN-GIVVRMGSYVQA 123 (125)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~-G~~iel~~~~~~ 123 (125)
..+++.+.|..+..++.... ..++.+.-|- |..+.++.+...
T Consensus 2 I~~WL~eeG~~~~~~~~~~~--~fh~~v~~P~~~~~~~Vi~P~~~ 44 (138)
T PF10061_consen 2 IENWLKEEGLKVEEPPDANA--YFHILVSPPQGGVVVDVIRPKDK 44 (138)
T ss_dssp HHHHHHHTT-EEEE---TTE--EEEEEEE-ST-T-EEEEEEETT-
T ss_pred hHHHHHhcCceEecCCCCCc--eEEEEEeCCCCCceEEEEeECCC
Confidence 56788999998876544321 1567777787 999999998764
No 231
>PRK11191 RNase E inhibitor protein; Provisional
Probab=27.70 E-value=83 Score=19.04 Aligned_cols=11 Identities=27% Similarity=0.127 Sum_probs=9.3
Q ss_pred EEEEEeCCCCC
Q 045980 103 KVGYVRDINGI 113 (125)
Q Consensus 103 ~~~~~~Dp~G~ 113 (125)
|.+||.||++.
T Consensus 111 WGT~~~~~~~~ 121 (138)
T PRK11191 111 WGTYFEDPNAE 121 (138)
T ss_pred cccceeCCCCc
Confidence 78899999983
No 232
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=27.66 E-value=1.5e+02 Score=20.18 Aligned_cols=53 Identities=17% Similarity=0.014 Sum_probs=31.2
Q ss_pred CCeEEEEEECCHHHHHHHHHHCCCeeccCCccCCCCc--EEEEEeCCCCCEEEEeeec
Q 045980 66 QPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQ--KVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~--~~~~~~Dp~G~~iel~~~~ 121 (125)
+..|+.+.|+|++. ..+...|-.+...+. .+.+. ...-+.+++-..+.++++.
T Consensus 154 GnPH~V~~Vddv~~--~~~~~~g~~l~~h~~-Fp~~vNV~F~~v~~~~~i~vrv~ERG 208 (272)
T COG0253 154 GNPHLVIFVDDVET--ANLEELGPLLESHEL-FPEGVNVGFVQVLSRDAIRLRVYERG 208 (272)
T ss_pred CCCeEEEEeCCccc--chhhhhhhhhhcCcc-CCCceEEEEEEeCCCCcEEEEEeecC
Confidence 66799999998887 333444433333222 22233 3445667777777777765
No 233
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=27.63 E-value=1e+02 Score=21.47 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.7
Q ss_pred ECCHHHHHHHHHHCCCeec
Q 045980 74 YADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 74 v~d~~~~~~~~~~~g~~~~ 92 (125)
+.|+.++.+.|.++|.-++
T Consensus 60 i~D~~~l~~~l~e~gIY~I 78 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPI 78 (316)
T ss_pred ccCHHHHHHHHHHCCCEEE
Confidence 5899999999999997655
No 234
>PRK13599 putative peroxiredoxin; Provisional
Probab=27.33 E-value=1.8e+02 Score=18.86 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=15.1
Q ss_pred cEEEEEeCCCCCEEEEee
Q 045980 102 QKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 102 ~~~~~~~Dp~G~~iel~~ 119 (125)
.+..++.||+|.+..+..
T Consensus 119 ~R~tfIID~dG~Ir~~~~ 136 (215)
T PRK13599 119 VRAVFIVDDKGTIRLIMY 136 (215)
T ss_pred eeEEEEECCCCEEEEEEE
Confidence 478899999999887754
No 235
>PHA02087 hypothetical protein
Probab=27.27 E-value=76 Score=16.62 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=15.9
Q ss_pred EEEEeCCCCCEEEEeeeccCC
Q 045980 104 VGYVRDINGIVVRMGSYVQAS 124 (125)
Q Consensus 104 ~~~~~Dp~G~~iel~~~~~~~ 124 (125)
.-.+.|.+|..|||-+....|
T Consensus 46 ~y~lvdsdg~~ielpe~~ggg 66 (83)
T PHA02087 46 QYMLVDSDGVKIELPESEGGG 66 (83)
T ss_pred eEEEEcCCCcEEECCcccCCC
Confidence 456889999999997765443
No 236
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=27.16 E-value=47 Score=14.21 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.6
Q ss_pred cCHHHHHHHHHHh
Q 045980 4 TDVAKSVAFYAKA 16 (125)
Q Consensus 4 ~d~~~a~~FY~~~ 16 (125)
+|.+++..||++.
T Consensus 22 ~d~~~A~~~~~~A 34 (39)
T PF08238_consen 22 KDYEKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccchHHHHHHH
Confidence 4789999999864
No 237
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=27.13 E-value=3e+02 Score=22.03 Aligned_cols=54 Identities=28% Similarity=0.295 Sum_probs=33.7
Q ss_pred eEEEEEECCHHHHHHHHHH-------CCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 68 IEVCFAYADVDAAYKRAVE-------NGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 68 ~~~~~~v~d~~~~~~~~~~-------~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+.+.=.-+|+++.++|..+ .|.-++...-..|-....-.+-|..||.+.|+++.
T Consensus 200 mRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERD 260 (1176)
T KOG0369|consen 200 MRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERD 260 (1176)
T ss_pred eEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeecc
Confidence 3333344788887776633 33334433334443446667889999999999864
No 238
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=27.11 E-value=89 Score=21.70 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=39.5
Q ss_pred eecCHHHHHHHHHHhcCCeEEeecCCceeeEEeeCCeEEEEeeccccccccccCCCCCCCCCCCCCeEEEEEECCHHHHH
Q 045980 2 YVTDVAKSVAFYAKAFDYTVRTLDHSHRWGELESGQTTIAFTRLHQHETDELTGSVQTPSSPQRQPIEVCFAYADVDAAY 81 (125)
Q Consensus 2 ~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 81 (125)
.+-|+-+|..|+.++++..+... ..+-+-.|++.+.+...-. + ....+.+.-+.++++.
T Consensus 174 TtLDvVRA~tFv~~~~~~~p~~~----v~VPVIGGHaG~TIlPLlS----------------Q-~~p~~~~~~~~~~~Lt 232 (345)
T KOG1494|consen 174 TTLDVVRANTFVAEVLNLDPAED----VDVPVIGGHAGITIIPLLS----------------Q-CKPPFRFTDDEIEALT 232 (345)
T ss_pred ehhhhhhHHHHHHHHhCCCchhc----CCcceecCcCCceEeeecc----------------c-CCCcccCCHHHHHHHH
Confidence 45688899999999999986321 1122222333333221110 0 1112333445678888
Q ss_pred HHHHHCCCeecc
Q 045980 82 KRAVENGAVPVS 93 (125)
Q Consensus 82 ~~~~~~g~~~~~ 93 (125)
.|++..|-+++.
T Consensus 233 ~RiQ~gGtEVV~ 244 (345)
T KOG1494|consen 233 HRIQNGGTEVVK 244 (345)
T ss_pred HHHHhCCceEEE
Confidence 888887777653
No 239
>PF13280 WYL: WYL domain
Probab=27.10 E-value=1.2e+02 Score=18.02 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=21.9
Q ss_pred CCCCeEEEEEECCHHHHHHHHHHCCC--eecc
Q 045980 64 QRQPIEVCFAYADVDAAYKRAVENGA--VPVS 93 (125)
Q Consensus 64 ~~~~~~~~~~v~d~~~~~~~~~~~g~--~~~~ 93 (125)
..+...+.+.+.|.+.+...+.+.|. +++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~v~Vl~ 156 (172)
T PF13280_consen 125 DDGSIIVTFPVNDSEELLRWLLSFGDHVEVLE 156 (172)
T ss_pred cceEEEEEEEEechHHHHHHHHHhCCCEEEEC
Confidence 34566678888888888888888884 4443
No 240
>PRK14677 hypothetical protein; Provisional
Probab=26.78 E-value=1.3e+02 Score=17.18 Aligned_cols=42 Identities=17% Similarity=0.104 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+.+...|.+.|+.++..-...++|.--....| |..+.+++-.
T Consensus 8 ~~A~~~L~~~Gy~Il~rN~r~~~GEIDlIa~~--~~~lvFVEVK 49 (107)
T PRK14677 8 ELACKFLKKKGYKILERNYRTKYGEIDIVARD--GREIVFVEVK 49 (107)
T ss_pred HHHHHHHHHCCCEEEEEEecCCCceeeEEEEE--CCEEEEEEEe
Confidence 34677888999999876666666644444444 5666666643
No 241
>PRK14675 hypothetical protein; Provisional
Probab=26.76 E-value=1.4e+02 Score=17.57 Aligned_cols=41 Identities=15% Similarity=-0.097 Sum_probs=28.5
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
.+...|.+.|..++..-....+|.--....| |..+.+++-.
T Consensus 17 ~A~~~L~~~G~~il~rn~r~~~GEIDlIa~d--~~~lvFVEVK 57 (125)
T PRK14675 17 IAVTYLKGLRYKIVERNFRCRCGEIDIIARD--GKTLVFVEVK 57 (125)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCCeEEEEEEe--CCEEEEEEEE
Confidence 4677789999999977666667755556666 3467666643
No 242
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=26.75 E-value=1.4e+02 Score=20.56 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=26.4
Q ss_pred HHHHHHHHHCCCeeccCCcc-CCCCcEEEEEeCCCC-CEE
Q 045980 78 DAAYKRAVENGAVPVSEPED-KEWGQKVGYVRDING-IVV 115 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~Dp~G-~~i 115 (125)
++.++++..+|++++..-.. ...| ....+..|+| ..+
T Consensus 59 d~~w~~vedAGV~vv~dD~eaa~~~-Ei~VLFTPFGk~T~ 97 (340)
T COG4007 59 DEHWKRVEDAGVEVVSDDAEAAEHG-EIHVLFTPFGKATF 97 (340)
T ss_pred HHHHHHHHhcCcEEecCchhhhhcc-eEEEEecccchhhH
Confidence 45689999999998866543 3334 6777888988 443
No 243
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=25.96 E-value=1.8e+02 Score=18.40 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=33.3
Q ss_pred CCeEEEEEECCHHHHHHHHHH----CCC--eeccCCcc---CCC-------Cc--EEEEEeCCCCCEEEEeeec
Q 045980 66 QPIEVCFAYADVDAAYKRAVE----NGA--VPVSEPED---KEW-------GQ--KVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~----~g~--~~~~~~~~---~~~-------g~--~~~~~~Dp~G~~iel~~~~ 121 (125)
+..-+.+.+++.....+.... .+. +++..+.. ..+ |. +..++.||+|.+..+....
T Consensus 65 g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~ 138 (187)
T PRK10382 65 GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTA 138 (187)
T ss_pred CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeC
Confidence 455678888887664443332 132 44544321 111 22 7889999999998876543
No 244
>PRK14673 hypothetical protein; Provisional
Probab=25.90 E-value=1.1e+02 Score=18.47 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEee
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~ 119 (125)
.+...|.++|+.++..-....+|.--...+|+++ .+.|++
T Consensus 35 ~A~~~L~~~Gy~IL~rN~r~~~GEIDLIa~~~~~-~lVFVE 74 (137)
T PRK14673 35 RALAFLQRAGLALVARNYRCRGGEIDLVMRERDG-TLVFVE 74 (137)
T ss_pred HHHHHHHHCCCEEeEeEecCCCCccCHHHccCCc-EEEEEE
Confidence 4667788999999976666666643334445432 444444
No 245
>PRK14685 hypothetical protein; Provisional
Probab=25.83 E-value=1.8e+02 Score=18.46 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+.+.+.|...|+.++..-...++|.--.... +|..+.|++-.
T Consensus 50 ~~Aa~yL~~~Gy~IL~RN~R~~~GEIDIIA~--dg~~LVFVEVK 91 (177)
T PRK14685 50 SAALRWLARQGLRPLARNLRCRAGEIDLAMR--DGEVLVLVEVR 91 (177)
T ss_pred HHHHHHHHHCCCEEeEeeecCCCCcEEEEEe--cCCEEEEEEEe
Confidence 4467788999999997766666674444444 45567776644
No 246
>PF09741 DUF2045: Uncharacterized conserved protein (DUF2045); InterPro: IPR019141 This entry is the conserved 250 residues of proteins of approximately 450 amino acids. It contains several highly conserved motifs including a CVxLxxxD motif. The function is unknown.
Probab=25.54 E-value=37 Score=22.56 Aligned_cols=19 Identities=21% Similarity=0.544 Sum_probs=16.9
Q ss_pred CCeEEEEEECCHHHHHHHH
Q 045980 66 QPIEVCFAYADVDAAYKRA 84 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~ 84 (125)
...+|+|.|+|.+++++.+
T Consensus 132 ~YP~i~F~vD~Fde~F~~~ 150 (237)
T PF09741_consen 132 TYPNICFTVDDFDEVFDDV 150 (237)
T ss_pred ccCeEEEEecChhhhhheE
Confidence 6789999999999998865
No 247
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=25.52 E-value=88 Score=18.90 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHCCCeeccCCc
Q 045980 76 DVDAAYKRAVENGAVPVSEPE 96 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~ 96 (125)
-.|++.++|.+.|+.+...+.
T Consensus 130 ~AD~IRd~L~~~Gi~i~Dt~~ 150 (156)
T cd07963 130 EADRIRDELAAQGIILEDSPE 150 (156)
T ss_pred HHHHHHHHHHHCCcEEEECCC
Confidence 357788899999999887654
No 248
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.93 E-value=1.9e+02 Score=18.27 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=32.1
Q ss_pred EEEE--CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 71 CFAY--ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 71 ~~~v--~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
-+.| ++.+-+++.|++...-++.. ...|. -.-++.|++|+.+.=+.+.
T Consensus 106 KidVNG~~~~PlykfLK~~~~~~lg~--~IkWN-F~KFLVd~~G~vv~Ry~pt 155 (171)
T KOG1651|consen 106 KIDVNGDNADPLYKFLKKVKGGPLGD--DIKWN-FTKFLVDKDGHVVKRFSPT 155 (171)
T ss_pred EEecCCCCCchHHHHHhhcCCCcccc--cceee-eEEEeECCCCcEEEeeCCC
Confidence 3445 57788888887755443322 34455 5568999999999866554
No 249
>PF09709 Cas_Csd1: CRISPR-associated protein (Cas_Csd1); InterPro: IPR010144 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Csd1 (CRISPR/Cas Subtype DVULG protein 1) family of Cas proteins, which tend to be found near CRISPR repeats of the DVULG subtype of CRISPR/Cas locus. The species range for this subtype, so far, is exclusively bacterial and mesophilic, although CRISPR loci in general are particularly common among archaea and thermophilic bacteria.
Probab=24.91 E-value=1.4e+02 Score=22.57 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEE
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVR 116 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~ie 116 (125)
.+.|+++.+.+...+.++....-........|+||+.+.
T Consensus 2 ~~~Ye~~~~~~~~~l~p~g~~~~~i~~~i~ld~dG~f~~ 40 (574)
T PF09709_consen 2 YEYYERLLDEGEPDLLPPGHSTKKIQFEIVLDEDGNFIS 40 (574)
T ss_pred HHHHHHHHHhcccccCCCCceeeEeeEEEEECCCCCEEe
Confidence 357888887776444444332223356688999999998
No 250
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=24.87 E-value=80 Score=13.96 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=15.7
Q ss_pred CCcEEEEEeCCCCCEEEEeeec
Q 045980 100 WGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 100 ~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
-|....|-.|+.|+++.+..+.
T Consensus 14 ~G~~~~y~YD~~g~l~~~t~~~ 35 (38)
T PF05593_consen 14 DGRTTRYTYDAAGRLTSVTDPD 35 (38)
T ss_pred CCCEEEEEECCCCCEEEEECCC
Confidence 3556678888888888876543
No 251
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=24.71 E-value=1.1e+02 Score=15.67 Aligned_cols=19 Identities=26% Similarity=0.081 Sum_probs=15.8
Q ss_pred CcEEEEEeCCCCCEEEEee
Q 045980 101 GQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 101 g~~~~~~~Dp~G~~iel~~ 119 (125)
|.+.+-+.|.+|+.|....
T Consensus 44 G~WrV~V~~~~G~~l~~~~ 62 (66)
T PF11141_consen 44 GDWRVEVVDEDGQVLGSLR 62 (66)
T ss_pred cCEEEEEEcCCCCEEEEEE
Confidence 6688899999999887654
No 252
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=24.67 E-value=33 Score=21.51 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCC
Q 045980 76 DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDIN 111 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~ 111 (125)
.+..++.+|++.|..+..-.....|| ...+++|-.
T Consensus 52 av~~a~~~L~~~Gf~PDvI~~H~GWG-e~Lflkdv~ 86 (171)
T PF12000_consen 52 AVARAARQLRAQGFVPDVIIAHPGWG-ETLFLKDVF 86 (171)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCCcc-hhhhHHHhC
Confidence 34556778888998655444456677 666666643
No 253
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=24.20 E-value=41 Score=21.72 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=20.7
Q ss_pred ECCHHHHHHHHHHCCCeeccCCccCCCC
Q 045980 74 YADVDAAYKRAVENGAVPVSEPEDKEWG 101 (125)
Q Consensus 74 v~d~~~~~~~~~~~g~~~~~~~~~~~~g 101 (125)
+++++++.+.+.+.|++++..+.....|
T Consensus 24 ~~~~eea~~~a~~iGyPVliKas~ggGG 51 (211)
T PF02786_consen 24 ISSVEEALEFAEEIGYPVLIKASAGGGG 51 (211)
T ss_dssp BSSHHHHHHHHHHH-SSEEEEETTSSTT
T ss_pred CCCHHHHHHHHHhcCCceEEeecccccc
Confidence 5789999999999999888776654444
No 254
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=24.06 E-value=1.9e+02 Score=18.10 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEE
Q 045980 75 ADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVV 115 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~i 115 (125)
.++..+.+.|...|.+++.+-.-...| +..+|.--+|-.+
T Consensus 114 rNv~~~~~~L~~~~IpilaeD~Gg~~g-R~i~F~p~tG~v~ 153 (164)
T COG1871 114 RNVEFAKEFLKDEGIPILAEDTGGDSG-RTIEFNPSTGRVR 153 (164)
T ss_pred HHHHHHHHHHHHcCCcEEEhhhCCCCC-cEEEEecCCCcEE
Confidence 678899999999999998765544445 6666666666554
No 255
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast.
Probab=24.02 E-value=72 Score=18.98 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.9
Q ss_pred CeecCHHHHHHHHHHhcCC
Q 045980 1 IYVTDVAKSVAFYAKAFDY 19 (125)
Q Consensus 1 i~v~d~~~a~~FY~~~lg~ 19 (125)
|.+.|.++..+||.+.|..
T Consensus 1 l~igd~~~v~~yy~~~F~~ 19 (126)
T PF11001_consen 1 LEIGDEEAVRAYYESAFKA 19 (126)
T ss_pred CCcCCHHHHHHHHHHHHHH
Confidence 4578999999999998854
No 256
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.88 E-value=72 Score=20.68 Aligned_cols=16 Identities=13% Similarity=-0.031 Sum_probs=12.1
Q ss_pred EEEEEeCCCCCEEEEe
Q 045980 103 KVGYVRDINGIVVRMG 118 (125)
Q Consensus 103 ~~~~~~Dp~G~~iel~ 118 (125)
--+.+.||||..|---
T Consensus 61 VD~~I~aPdgkvI~~~ 76 (209)
T KOG1693|consen 61 VDYDIEAPDGKVIYSE 76 (209)
T ss_pred eEEEEECCCCCEEeec
Confidence 3568999999987543
No 257
>PHA00159 endonuclease I
Probab=23.83 E-value=1.7e+02 Score=17.88 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=28.7
Q ss_pred EEEECCHHHHHHHHHHCCCeeccCCccCCC---CcEEEE---EeCCCCCEEEEe
Q 045980 71 CFAYADVDAAYKRAVENGAVPVSEPEDKEW---GQKVGY---VRDINGIVVRMG 118 (125)
Q Consensus 71 ~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~---g~~~~~---~~Dp~G~~iel~ 118 (125)
.|+..=-+...+.|.+.|+....+.....| .....| |.=|+|.++|.-
T Consensus 14 ~fRSgLE~k~ak~Le~~gv~~~yE~~ki~y~~pA~~~~YTPDF~LpnGiiiEvK 67 (148)
T PHA00159 14 AFRSGLEDKVSKQLEKKGVKFDYELWKIPYVIPASDHKYTPDFLLPNGIIIETK 67 (148)
T ss_pred cccchHHHHHHHHHHhcCCCeEeeeeeeeeeccCCCCeeCCceecCCCCEEEec
Confidence 344444456778889999876655544333 112222 446789998864
No 258
>PHA00212 putative transcription regulator
Probab=23.80 E-value=67 Score=15.91 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=7.9
Q ss_pred HHHHHHHHHhc
Q 045980 7 AKSVAFYAKAF 17 (125)
Q Consensus 7 ~~a~~FY~~~l 17 (125)
+.++.||.+.|
T Consensus 18 q~sve~yk~~l 28 (63)
T PHA00212 18 QHSVEWYKKQL 28 (63)
T ss_pred HHHHHHHHHHH
Confidence 46778888765
No 259
>PF13964 Kelch_6: Kelch motif
Probab=23.73 E-value=93 Score=14.40 Aligned_cols=20 Identities=5% Similarity=-0.358 Sum_probs=16.6
Q ss_pred EEEEEeCCCCCEEEEeeecc
Q 045980 103 KVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 103 ~~~~~~Dp~G~~iel~~~~~ 122 (125)
..+++.||.-+.|+.+.+.+
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred ccEEEEcCCCCcEEECCCCC
Confidence 67789999999999887655
No 260
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=23.70 E-value=2.1e+02 Score=18.47 Aligned_cols=52 Identities=17% Similarity=0.093 Sum_probs=36.0
Q ss_pred CCeEEEEEECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeecc
Q 045980 66 QPIEVCFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
+-+.+-+.-+|++.+.+.+.+.|+...... +. ...|...+.|..|++.....
T Consensus 95 ~DiDlLV~~~d~~~a~~~L~~~Gy~~~~~~----~~-~~~~~~~~~~~~idlH~~l~ 146 (249)
T PF14907_consen 95 GDIDLLVPPEDLERAVELLEELGYRIESPS----EH-HWVYSHEPKGISIDLHWRLF 146 (249)
T ss_pred CCeEEEEeCCcHHHHHHHHHHcCCEeccCC----Cc-ceEEEecCCCEEEEEEecCC
Confidence 445666666999999999999999876541 11 33344437888888876543
No 261
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=23.70 E-value=1.1e+02 Score=15.21 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=17.6
Q ss_pred EEECCHHHHHHHHHHCCCeecc
Q 045980 72 FAYADVDAAYKRAVENGAVPVS 93 (125)
Q Consensus 72 ~~v~d~~~~~~~~~~~g~~~~~ 93 (125)
+.-+.+.+.++++.+.|++|++
T Consensus 31 Vpy~~ls~~~q~I~r~GGkIvs 52 (56)
T PF01383_consen 31 VPYSQLSQEMQRINRQGGKIVS 52 (56)
T ss_dssp EEHHHHHHHHHHHHHCT-EEEE
T ss_pred EcHHHhHHHHHHHHHCCCEEEE
Confidence 3448999999999999999874
No 262
>PF11645 PDDEXK_5: PD-(D/E)XK endonuclease; InterPro: IPR021671 This family are putative endonuclease proteins which are restricted to Synechocystis. ; PDB: 2OST_D.
Probab=23.64 E-value=1.7e+02 Score=17.93 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCeeccCCcc-CCCCcEEEEEeCCCCCEEEEeeec
Q 045980 78 DAAYKRAVENGAVPVSEPED-KEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
.++..++.+.|..+..|... .+|. -+.|.+|.++.|....
T Consensus 11 ~~ii~~ll~~GY~V~~P~gDn~~YD----LV~d~eg~L~RIQvKT 51 (149)
T PF11645_consen 11 AKIINRLLEKGYSVSIPFGDNLKYD----LVFDKEGILWRIQVKT 51 (149)
T ss_dssp HHHHHHHHHTT-EEEEESSTTSS-S----EEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHcCcEEEeecCCCCCcC----EEEecCCcEEEEEEee
Confidence 35677889999998766543 3333 4557778777776543
No 263
>PRK14688 hypothetical protein; Provisional
Probab=23.60 E-value=1.7e+02 Score=17.21 Aligned_cols=42 Identities=12% Similarity=-0.129 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+.+...|.+.|+.++..-....+|.--.-.+| |..+.+++-.
T Consensus 14 ~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~--~~~lVFVEVK 55 (121)
T PRK14688 14 KLAAEYLKGMGYSIIQTNCRLPEGEIDIVGQD--GEYLVFIEVR 55 (121)
T ss_pred HHHHHHHHHCCCEEEEEEeeCCCCcEeEEEee--CCEEEEEEEE
Confidence 34677788999999977666666644444444 5677776643
No 264
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=23.48 E-value=89 Score=19.37 Aligned_cols=17 Identities=18% Similarity=0.213 Sum_probs=13.7
Q ss_pred EEEEEeCCCCCEEEEee
Q 045980 103 KVGYVRDINGIVVRMGS 119 (125)
Q Consensus 103 ~~~~~~Dp~G~~iel~~ 119 (125)
..+|+.||+|....++.
T Consensus 156 ~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 156 AFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp SEEEEE-TTSEEEEEEC
T ss_pred cEEEEEcCCCcEEEEEc
Confidence 58899999999988774
No 265
>PF11782 DUF3319: Protein of unknown function (DUF3319); InterPro: IPR021753 This is a family of short bacterial proteins, a few of which are annotated as being minor tail protein. Otherwise the function is unknown.
Probab=23.41 E-value=63 Score=17.91 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHhcC
Q 045980 5 DVAKSVAFYAKAFD 18 (125)
Q Consensus 5 d~~~a~~FY~~~lg 18 (125)
-++++++|||+ +|
T Consensus 36 ~vKksIdww~d-t~ 48 (88)
T PF11782_consen 36 EVKKSIDWWCD-TG 48 (88)
T ss_pred HHHHHHHHHHh-cc
Confidence 36889999998 55
No 266
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=23.38 E-value=79 Score=23.47 Aligned_cols=16 Identities=19% Similarity=0.165 Sum_probs=13.2
Q ss_pred EEEEEeCCCCCEEEEe
Q 045980 103 KVGYVRDINGIVVRMG 118 (125)
Q Consensus 103 ~~~~~~Dp~G~~iel~ 118 (125)
..+.|.|||||.+.+-
T Consensus 206 A~I~l~dPdG~~~vf~ 221 (538)
T COG1389 206 ARIVLKDPDGNLVVFP 221 (538)
T ss_pred eEEEEECCCCcEEEec
Confidence 5678999999988764
No 267
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=23.29 E-value=87 Score=21.26 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=12.1
Q ss_pred EEEEEeCCCCCEEEE
Q 045980 103 KVGYVRDINGIVVRM 117 (125)
Q Consensus 103 ~~~~~~Dp~G~~iel 117 (125)
-..+++|+||+++|-
T Consensus 234 FvtWi~~~dGsWLec 248 (275)
T PF15499_consen 234 FVTWIRDSDGSWLEC 248 (275)
T ss_pred eEEEEEcCCCCeEee
Confidence 355899999998874
No 268
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=23.13 E-value=1.6e+02 Score=21.06 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=26.3
Q ss_pred EEEECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCE
Q 045980 71 CFAYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIV 114 (125)
Q Consensus 71 ~~~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~ 114 (125)
.-++.++.-+...+............... ....+|+.+|.|++
T Consensus 230 VsR~pSl~~l~~~~~~~~~~~~~~~~~~~-~~~~~yvlNP~gDL 272 (383)
T PF03568_consen 230 VSRMPSLHFLRDLLKRHSNSRSPGYESKD-PKRGFYVLNPSGDL 272 (383)
T ss_pred eEecChHHHHHHHHHHhhhhccccccccc-ccceEEEECCCCCH
Confidence 34678888888888764433221111111 12489999999985
No 269
>TIGR00252 conserved hypothetical protein TIGR00252. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment
Probab=22.91 E-value=1.7e+02 Score=17.09 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+.+.+.|.+.|..++..-....+|.--.-.+ +|..+.+++-.
T Consensus 14 ~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~--~~~~lvFVEVK 55 (119)
T TIGR00252 14 SQARAWLEQKGLKFIAANWNSPWGEIDLIMH--DTKTIAFVEVR 55 (119)
T ss_pred HHHHHHHHHCCCEEeEEEecCCCCcEEEEEe--eCCEEEEEEEE
Confidence 3467788899999997766666664333333 46667666643
No 270
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=22.87 E-value=90 Score=13.83 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=12.6
Q ss_pred CcEEEEEeCCCCCEEEEeeec
Q 045980 101 GQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 101 g~~~~~~~Dp~G~~iel~~~~ 121 (125)
|....|-.|..|+++....+.
T Consensus 15 G~~~~~~YD~~Grl~~~tdp~ 35 (42)
T TIGR01643 15 GTTTRYTYDAAGRLVEITDAD 35 (42)
T ss_pred CCEEEEEECCCCCEEEEECCC
Confidence 445556667777766665443
No 271
>PF10001 DUF2242: Uncharacterized protein conserved in bacteria (DUF2242); InterPro: IPR018718 This family includes putative lipoproteins and uncharacterised proteins.
Probab=22.76 E-value=81 Score=18.58 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=12.8
Q ss_pred HHHHHHHHHCCCeeccC
Q 045980 78 DAAYKRAVENGAVPVSE 94 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~ 94 (125)
+++.+.|.++|+.+...
T Consensus 2 EAaRRALLSQGY~i~~~ 18 (121)
T PF10001_consen 2 EAARRALLSQGYIITSA 18 (121)
T ss_pred hHHHHHHhcCCeEecCC
Confidence 56778889999876543
No 272
>PHA02503 putative transcription regulator; Provisional
Probab=22.63 E-value=74 Score=15.43 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=8.1
Q ss_pred HHHHHHHHHhc
Q 045980 7 AKSVAFYAKAF 17 (125)
Q Consensus 7 ~~a~~FY~~~l 17 (125)
++++.||.+.|
T Consensus 16 q~sve~yke~l 26 (57)
T PHA02503 16 QESVEFYKEKL 26 (57)
T ss_pred HHHHHHHHHHH
Confidence 56778888766
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=22.50 E-value=77 Score=12.94 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=12.0
Q ss_pred cCHHHHHHHHHHhcCC
Q 045980 4 TDVAKSVAFYAKAFDY 19 (125)
Q Consensus 4 ~d~~~a~~FY~~~lg~ 19 (125)
.|.++|...|.+++.+
T Consensus 15 ~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 15 GDYEEALEYFEKALEL 30 (34)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5778888888877643
No 274
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=22.39 E-value=62 Score=17.67 Aligned_cols=18 Identities=22% Similarity=-0.009 Sum_probs=14.4
Q ss_pred EEEEEeCCCCCEEEEeee
Q 045980 103 KVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 103 ~~~~~~Dp~G~~iel~~~ 120 (125)
-.+.+.||+|+.+.-...
T Consensus 38 ~~v~i~dp~g~~v~~~~~ 55 (99)
T PF01835_consen 38 VTVTIKDPSGNEVFRWSV 55 (99)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred eEEEEECCCCCEEEEEEe
Confidence 578999999999865554
No 275
>PRK14680 hypothetical protein; Provisional
Probab=22.37 E-value=1.9e+02 Score=17.36 Aligned_cols=42 Identities=14% Similarity=-0.084 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+.+.+.|.+.|..++..-....+|.--....| |..+.+++-.
T Consensus 14 ~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~--~~~lVFVEVK 55 (134)
T PRK14680 14 DAAAALLQRTGHRILARNWRHGGLELDIVCED--GDTIVFVEVK 55 (134)
T ss_pred HHHHHHHHHCCCEEEEeecCCCCCeEEEEEEe--CCEEEEEEEE
Confidence 34677889999999977666666744444444 5666666643
No 276
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=22.35 E-value=62 Score=21.39 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=18.8
Q ss_pred CCCeeccCCccCCCCcEEEEEeCCCCCEEEE
Q 045980 87 NGAVPVSEPEDKEWGQKVGYVRDINGIVVRM 117 (125)
Q Consensus 87 ~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel 117 (125)
.|..++......+.|.--.+.+|.+|+.+-|
T Consensus 122 ~g~~~i~rE~~t~~G~IDiL~~D~~G~~VVI 152 (228)
T PF01939_consen 122 EGLRLIEREYPTPIGRIDILAKDKDGNLVVI 152 (228)
T ss_dssp TT-EEEEEEEEETTEEEEEEEE-TTS-EEEE
T ss_pred CCCEEEEEEEeCCCCceeEEEECCCCCEEEE
Confidence 5666554444455676678999999987554
No 277
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=22.33 E-value=55 Score=13.33 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHCCCe
Q 045980 76 DVDAAYKRAVENGAV 90 (125)
Q Consensus 76 d~~~~~~~~~~~g~~ 90 (125)
....+++.+++.|++
T Consensus 19 ~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 19 AALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHhCCC
Confidence 345667777777754
No 278
>PRK10314 putative acyltransferase; Provisional
Probab=22.30 E-value=97 Score=18.67 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCeEEe
Q 045980 7 AKSVAFYAKAFDYTVRT 23 (125)
Q Consensus 7 ~~a~~FY~~~lg~~~~~ 23 (125)
..+..||.+ +||....
T Consensus 118 ~~a~~fY~k-~GF~~~g 133 (153)
T PRK10314 118 AHLQNFYQS-FGFIPVT 133 (153)
T ss_pred HHHHHHHHH-CCCEECC
Confidence 456789996 9998753
No 279
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=22.29 E-value=1e+02 Score=20.97 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=26.4
Q ss_pred EECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCC
Q 045980 73 AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDIN 111 (125)
Q Consensus 73 ~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~ 111 (125)
.++..+++.+.+.+.|+.+.--+....|- -+.|.+||-
T Consensus 36 A~aQh~~lve~l~~~gv~V~ll~~~~~~P-d~VFt~D~~ 73 (267)
T COG1834 36 AVAQHEALVEALEKNGVEVHLLPPIEGLP-DQVFTRDPG 73 (267)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcccCCC-cceEeccce
Confidence 44667778888899999986555444443 567777764
No 280
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=22.26 E-value=1.2e+02 Score=21.16 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=24.2
Q ss_pred EECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCC
Q 045980 73 AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDI 110 (125)
Q Consensus 73 ~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp 110 (125)
.+++.+++.+.+.+.|++++..|.....|.....+.++
T Consensus 121 ~~~~~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~ 158 (380)
T TIGR01142 121 FADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGP 158 (380)
T ss_pred EeCCHHHHHHHHHHcCCCEEEEECCCcCCCCeEEECCH
Confidence 45677777666677788888777765444344445543
No 281
>COG3042 Hlx Putative hemolysin [General function prediction only]
Probab=21.80 E-value=1.6e+02 Score=16.26 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEe
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~ 118 (125)
.-+.....+.|+.... .+...|....+..=|||-++|=+
T Consensus 37 NpAs~yC~~~GG~l~~--~~~~~G~~~~~C~LPdGr~~eEw 75 (85)
T COG3042 37 NPASVYCAQQGGTLEA--VKREDGGVVGMCVLPDGRICEEW 75 (85)
T ss_pred CHHHHHHHHhCCeeee--EEccCCCEEEEEECCCCcccHHH
Confidence 3455567788987542 22333547889999999877633
No 282
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=21.66 E-value=3e+02 Score=21.65 Aligned_cols=46 Identities=17% Similarity=0.002 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeeccCC
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYVQAS 124 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~~~~ 124 (125)
.+.++++++|+.++.......-..+.+.+...+|..+.-+....+|
T Consensus 404 ~wa~~le~aG~~viyg~~~~k~H~K~~li~r~~~~~~~~y~~igTg 449 (672)
T TIGR03705 404 RWARRLEEAGVHVVYGVVGLKTHAKLALVVRREGGELRRYVHLGTG 449 (672)
T ss_pred HHHHHHHHcCCEEEEcCCCeeeeeEEEEEEEeeCCceEEEEEecCC
Confidence 3455667777776654432222335666666666666555554443
No 283
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=21.63 E-value=2.5e+02 Score=18.41 Aligned_cols=48 Identities=17% Similarity=-0.076 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHCCCeeccC---CccCC---CCcEEEEEeCCCCCEEEEeeecc
Q 045980 75 ADVDAAYKRAVENGAVPVSE---PEDKE---WGQKVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~~~---~~~~~---~g~~~~~~~Dp~G~~iel~~~~~ 122 (125)
.-++++.+.+.+.|++.... .+.-. -|.+....+||+|+..-+|...+
T Consensus 190 ~mv~~~~~~L~~~Gv~~~~~~~~~~~~~~g~c~~c~~~~~~~~~~~~~~c~~~~ 243 (246)
T cd06218 190 PMLKAVAELAAERGVPCQVSLEERMACGIGACLGCVVKTKDDEGGYKRVCKDGP 243 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccccCccceecccEEEeecCCCccEEEeCcCC
Confidence 34667777788888864322 22111 24567789999998887776654
No 284
>PTZ00056 glutathione peroxidase; Provisional
Probab=21.55 E-value=2.3e+02 Score=18.04 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=13.4
Q ss_pred EEEEeCCCCCEEEEee
Q 045980 104 VGYVRDINGIVVRMGS 119 (125)
Q Consensus 104 ~~~~~Dp~G~~iel~~ 119 (125)
..++.|++|.++....
T Consensus 147 ~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 147 GKFLVNKSGNVVAYFS 162 (199)
T ss_pred EEEEECCCCcEEEEeC
Confidence 5899999999987654
No 285
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=21.46 E-value=1.7e+02 Score=16.51 Aligned_cols=35 Identities=11% Similarity=-0.047 Sum_probs=21.2
Q ss_pred HHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCC
Q 045980 79 AAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGI 113 (125)
Q Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~ 113 (125)
.+.+.+.+.|+.+..+.....--......+.|.|+
T Consensus 21 ~I~~~ak~~g~~~~GPipLPtk~~~~tv~rsPh~~ 55 (99)
T TIGR01046 21 QIKRIAEKTGVRMSGPVPLPTKRLRVPTRKSPDGE 55 (99)
T ss_pred HHHHHHHHcCCEEECCccCCcceEEEEeeeCCCCC
Confidence 34445566888876554333333367788888864
No 286
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=21.44 E-value=76 Score=13.60 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=13.6
Q ss_pred EEEEECCHHHHHHHHHHCCCeec
Q 045980 70 VCFAYADVDAAYKRAVENGAVPV 92 (125)
Q Consensus 70 ~~~~v~d~~~~~~~~~~~g~~~~ 92 (125)
+.|++.|-.+..+.+..+|+.-+
T Consensus 2 V~~WT~d~~~~~~~~l~~GVDgI 24 (30)
T PF13653_consen 2 VYFWTPDKPASWRELLDLGVDGI 24 (30)
T ss_dssp EEEET--SHHHHHHHHHHT-SEE
T ss_pred eEEecCCCHHHHHHHHHcCCCEe
Confidence 34555555777888888887644
No 287
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=21.37 E-value=1.3e+02 Score=17.76 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=16.0
Q ss_pred CcEEEEEeCCCCCEEEEee
Q 045980 101 GQKVGYVRDINGIVVRMGS 119 (125)
Q Consensus 101 g~~~~~~~Dp~G~~iel~~ 119 (125)
|.....+.+|||.++.+.-
T Consensus 68 GGtHvHvfSpDG~~lSFTY 86 (122)
T PF12566_consen 68 GGTHVHVFSPDGSWLSFTY 86 (122)
T ss_pred CCccceEECCCCCEEEEEe
Confidence 4588899999999998764
No 288
>PRK00341 hypothetical protein; Provisional
Probab=21.26 E-value=1.4e+02 Score=16.51 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=16.3
Q ss_pred CCCCeEEEEEE-----CCHHHHHHHHHHCC
Q 045980 64 QRQPIEVCFAY-----ADVDAAYKRAVENG 88 (125)
Q Consensus 64 ~~~~~~~~~~v-----~d~~~~~~~~~~~g 88 (125)
.+...++.+.+ +.++++++.|.+..
T Consensus 56 ~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~ 85 (91)
T PRK00341 56 NGKYTTVQLHIVATDEDQLQDINSALRATG 85 (91)
T ss_pred CCEEEEEEEEEEECCHHHHHHHHHHHhhCC
Confidence 45556665544 45778888887755
No 289
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=21.21 E-value=1.6e+02 Score=17.82 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=17.7
Q ss_pred EEEEEeCCCCCEEEEeeeccCC
Q 045980 103 KVGYVRDINGIVVRMGSYVQAS 124 (125)
Q Consensus 103 ~~~~~~Dp~G~~iel~~~~~~~ 124 (125)
-.+.|+|+++..|....+.+..
T Consensus 111 VvA~fr~~~~~~Wr~~~~~~~~ 132 (146)
T TIGR03352 111 VVAAYRDIDNAEWRVVYKVPPK 132 (146)
T ss_pred EEEEeecCCCCceEEEEecCCC
Confidence 4668999999999998876653
No 290
>PRK14689 hypothetical protein; Provisional
Probab=21.17 E-value=2e+02 Score=17.09 Aligned_cols=42 Identities=7% Similarity=0.006 Sum_probs=26.7
Q ss_pred HHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeeec
Q 045980 78 DAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSYV 121 (125)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~~ 121 (125)
+.+.+.|.++|+.++..-....+|.--.-.. +|..+.+++-.
T Consensus 16 ~~Aa~~L~~~Gy~Il~rN~r~~~GEIDIIa~--~~~~lVFVEVK 57 (124)
T PRK14689 16 ERVLRLLQRRGWRLLDRNWSCRWGELDLVLE--KQQRLLVVEVK 57 (124)
T ss_pred HHHHHHHHHCCCEEEEEecCCCCCcccEEee--eCCEEEEEEEE
Confidence 3467778899999997666666663333333 45566666644
No 291
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=21.13 E-value=82 Score=12.73 Aligned_cols=15 Identities=13% Similarity=0.576 Sum_probs=10.7
Q ss_pred cCHHHHHHHHHHhcC
Q 045980 4 TDVAKSVAFYAKAFD 18 (125)
Q Consensus 4 ~d~~~a~~FY~~~lg 18 (125)
.+.++|+..|.+.+.
T Consensus 15 ~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 15 GNYEEAIEYFEKALE 29 (34)
T ss_dssp T-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 567888888887664
No 292
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=21.08 E-value=1.1e+02 Score=14.29 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=10.6
Q ss_pred ECCHHHHHHHHHH
Q 045980 74 YADVDAAYKRAVE 86 (125)
Q Consensus 74 v~d~~~~~~~~~~ 86 (125)
-.|+|++++++.+
T Consensus 20 PPDLdel~r~l~~ 32 (42)
T PF12221_consen 20 PPDLDELFRKLQD 32 (42)
T ss_pred CCCHHHHHHHHHH
Confidence 4799999998865
No 293
>cd01902 Ntn_CGH Choloylglycine hydrolase (CGH) is a bile salt-modifying enzyme that hydrolyzes non-peptide carbon-nitrogen bonds in choloylglycine and choloyltaurine, both of which are present in bile. CGH is present in a number of probiotic microbial organisms that inhabit the gut. CGH has an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which CGH belongs.
Probab=21.07 E-value=2.8e+02 Score=18.93 Aligned_cols=43 Identities=26% Similarity=0.156 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHCCCeec-cCCccCCCCcEEEEEeCCCCCEEEE
Q 045980 75 ADVDAAYKRAVENGAVPV-SEPEDKEWGQKVGYVRDINGIVVRM 117 (125)
Q Consensus 75 ~d~~~~~~~~~~~g~~~~-~~~~~~~~g~~~~~~~Dp~G~~iel 117 (125)
++++++.+.+.+..+... ..+....--..+..|.|+.|+.+.|
T Consensus 111 ~tV~Ea~~~l~~~~i~~~~~~~~~~~~~~lH~~i~D~tG~s~VI 154 (291)
T cd01902 111 ATVEEAVKALAKEPFVIVASVPGDGREATLHLSISDATGDSAII 154 (291)
T ss_pred CCHHHHHHHHhcCceEEeecCCCCCCcccEEEEEEcCCCCEEEE
Confidence 788999998876544322 1111111113688899999975543
No 294
>PRK11899 prephenate dehydratase; Provisional
Probab=20.92 E-value=2.9e+02 Score=18.92 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=32.5
Q ss_pred CeEEEEEECC----HHHHHHHHHHCCCe---eccCCccCCCCcEEEEEeCCCCCE
Q 045980 67 PIEVCFAYAD----VDAAYKRAVENGAV---PVSEPEDKEWGQKVGYVRDINGIV 114 (125)
Q Consensus 67 ~~~~~~~v~d----~~~~~~~~~~~g~~---~~~~~~~~~~g~~~~~~~Dp~G~~ 114 (125)
...+.|.++| +-.+++.+..+|+. +.+.|....-+ .+.++.|=+|+.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~-~Y~F~id~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFT-ATQFYADIEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCc-eEEEEEEEECCC
Confidence 5678888865 67788888889985 55666643333 566777777753
No 295
>KOG4094 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.91 E-value=80 Score=19.39 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=13.4
Q ss_pred cCHHHHHHHHHHhcCCe
Q 045980 4 TDVAKSVAFYAKAFDYT 20 (125)
Q Consensus 4 ~d~~~a~~FY~~~lg~~ 20 (125)
-+.+++.+||.+.|+-.
T Consensus 124 vsA~ems~FYk~FL~kn 140 (178)
T KOG4094|consen 124 VSANEMSEFYKDFLNKN 140 (178)
T ss_pred cCHHHHHHHHHHHHhhh
Confidence 36789999999988654
No 296
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=20.85 E-value=2e+02 Score=18.98 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=9.8
Q ss_pred eEEEEEECCHHHHHHHHHHCCC
Q 045980 68 IEVCFAYADVDAAYKRAVENGA 89 (125)
Q Consensus 68 ~~~~~~v~d~~~~~~~~~~~g~ 89 (125)
.++.+.|++.+...+.+.++|.
T Consensus 64 ~DvHLMV~~p~~~i~~fa~aga 85 (220)
T COG0036 64 LDVHLMVENPDRYIEAFAKAGA 85 (220)
T ss_pred eEEEEecCCHHHHHHHHHHhCC
Confidence 3444444444444444444443
No 297
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=20.76 E-value=33 Score=18.44 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=13.8
Q ss_pred EEECCHHHHHHHHHHCCCeeccC
Q 045980 72 FAYADVDAAYKRAVENGAVPVSE 94 (125)
Q Consensus 72 ~~v~d~~~~~~~~~~~g~~~~~~ 94 (125)
+..+.++.++..|.+.|+.++..
T Consensus 36 ~~~e~id~i~~~L~~~gI~Vvd~ 58 (82)
T PF03979_consen 36 LDPEQIDEIYDTLEDEGIEVVDE 58 (82)
T ss_dssp --HHHHHHHHHHHHTT----B--
T ss_pred CCHHHHHHHHHHHHHCCCEEecC
Confidence 55678999999999999998863
No 298
>PF07103 DUF1365: Protein of unknown function (DUF1365); InterPro: IPR010775 This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown.
Probab=20.66 E-value=82 Score=21.11 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=14.2
Q ss_pred eccCCccCCCCcEEEEEeCCC
Q 045980 91 PVSEPEDKEWGQKVGYVRDIN 111 (125)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~Dp~ 111 (125)
++.+..++|||.+.+|+..++
T Consensus 121 vvaEV~NTPfgErH~Yvl~~~ 141 (254)
T PF07103_consen 121 VVAEVNNTPFGERHCYVLPAD 141 (254)
T ss_pred EEEEEeCCCCCcEEEEEeccc
Confidence 344555667777788877775
No 299
>KOG3323 consensus D-Tyr-tRNA (Tyr) deacylase [Translation, ribosomal structure and biogenesis]
Probab=20.59 E-value=2.2e+02 Score=17.38 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=26.8
Q ss_pred eEEEEEECCHHHHHHHHHHC--CCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 68 IEVCFAYADVDAAYKRAVEN--GAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 68 ~~~~~~v~d~~~~~~~~~~~--g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+.++|..+|-.+..+.+.+. ..++....... + |.-.+.|.+|+++.+-+.
T Consensus 29 vlvgi~~~dt~ed~~kmvrkiLnlrlfe~es~k--~-w~ksv~dl~~eiL~VsQf 80 (149)
T KOG3323|consen 29 VLVGISKDDTEEDLEKMVRKILNLRLFEDESGK--G-WKKSVMDLNGEILCVSQF 80 (149)
T ss_pred EEEEEccCCCHHHHHHHHHHHhheeeccccccC--c-ccchhhhCCCCEEEEEee
Confidence 44566555544444444331 22322211122 2 566799999999988764
No 300
>PRK11569 transcriptional repressor IclR; Provisional
Probab=20.58 E-value=2.8e+02 Score=18.62 Aligned_cols=43 Identities=7% Similarity=-0.095 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEe
Q 045980 76 DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 76 d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~ 118 (125)
.+.+.++++.+.|+.+..+.....-..-.+-+.|++|..+--+
T Consensus 196 ~l~~~l~~ir~~Gya~~~~e~~~gv~~iA~Pi~~~~g~~~aal 238 (274)
T PRK11569 196 HLKEDLAQTRKRGYSFDDEEHALGLRCVAACIFDEHREPFAAI 238 (274)
T ss_pred HHHHHHHHHHHhCCccccccCCcCcEEEEEEEECCCCCEEEEE
Confidence 4555666777889887655443332324456899999877544
No 301
>PF08379 Bact_transglu_N: Bacterial transglutaminase-like N-terminal region; InterPro: IPR013589 This region is found towards the N terminus of various archaeal and bacterial hypothetical proteins. Some of these are annotated as being transglutaminase-like proteins, and in fact contain a transglutaminase-like superfamily domain (IPR002931 from INTERPRO).
Probab=20.51 E-value=1.5e+02 Score=15.58 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=15.3
Q ss_pred EEEEEeCCCCCEEEEeeecc
Q 045980 103 KVGYVRDINGIVVRMGSYVQ 122 (125)
Q Consensus 103 ~~~~~~Dp~G~~iel~~~~~ 122 (125)
......|.+||.+..+.-..
T Consensus 48 ~~~~~~D~fGN~v~~~~~~~ 67 (82)
T PF08379_consen 48 RVREYTDFFGNRVHRFSFPE 67 (82)
T ss_pred EEEEEECCCCCEEEEEEECC
Confidence 56678999999988776543
No 302
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=20.50 E-value=3.1e+02 Score=20.09 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=28.2
Q ss_pred CCeEEEEEEC--CHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEeee
Q 045980 66 QPIEVCFAYA--DVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 66 ~~~~~~~~v~--d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
+..-|.|.+- -..++.+.++++|+.........||| +||...-|.|.-.
T Consensus 345 GGYFIsld~~~G~AkrvV~lakeAGV~LT~AGAtfPyg------~DP~D~nIRiAPS 395 (425)
T PF12897_consen 345 GGYFISLDVLDGTAKRVVELAKEAGVALTPAGATFPYG------KDPRDSNIRIAPS 395 (425)
T ss_dssp BSS-EEEEESTT-HHHHHHHHHHTTEE---TTTTSGGG--------TTS-EEEE--S
T ss_pred CceEEEEecCCChHHHHHHHHHHhCceeCCCCCCCCCC------CCCCCCcEEecCC
Confidence 4456888773 35677888899999876555555665 8998888877543
No 303
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=20.49 E-value=1.4e+02 Score=16.03 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=11.8
Q ss_pred EECCHHHHHHHH----HHCCCee
Q 045980 73 AYADVDAAYKRA----VENGAVP 91 (125)
Q Consensus 73 ~v~d~~~~~~~~----~~~g~~~ 91 (125)
..+|+|++++++ ++.|+.-
T Consensus 23 ~~~d~d~Al~eM~e~A~~lGAnA 45 (74)
T TIGR03884 23 ESDNVDEIVENLREKVKAKGGMG 45 (74)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCE
Confidence 347887776666 4566653
No 304
>PF10033 ATG13: Autophagy-related protein 13; InterPro: IPR018731 Members of this family of phosphoproteins are involved in cytoplasm to vacuole transport (Cvt), and more specifically in Cvt vesicle formation. They are probably involved in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage [, , ].
Probab=20.44 E-value=2.7e+02 Score=18.36 Aligned_cols=54 Identities=7% Similarity=-0.112 Sum_probs=33.1
Q ss_pred CCeEEEEEECCHHHHHHHHHHCCC----eeccCCcc---------CCCCcEEEEEeCCCCCEEEEeee
Q 045980 66 QPIEVCFAYADVDAAYKRAVENGA----VPVSEPED---------KEWGQKVGYVRDINGIVVRMGSY 120 (125)
Q Consensus 66 ~~~~~~~~v~d~~~~~~~~~~~g~----~~~~~~~~---------~~~g~~~~~~~Dp~G~~iel~~~ 120 (125)
..-+|++.++|.+++.+.+..--- .-..+|.. -+.+ ....+.|.+|+.|.++.-
T Consensus 35 ~nkWFNL~~~e~~~~~~~l~~w~~~~~~~~~~pPlvIei~Ld~~~l~~~-~~l~l~d~~g~~~~v~~~ 101 (233)
T PF10033_consen 35 RNKWFNLEIDESDELREELKRWRSCSDLESRLPPLVIEIYLDTRQLSSN-QSLVLKDDDGKRWDVCKG 101 (233)
T ss_pred CCccEeecCCCcHHHHHHHHHhhhcccccCCCCCEEEEEEEecCCCCCC-CceEecCCCCceeeeccc
Confidence 445789999888887776644211 11111111 1122 677899999999998764
No 305
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=20.30 E-value=1.8e+02 Score=16.26 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=15.8
Q ss_pred EEEEEeCCCCCEEEEeeeccCC
Q 045980 103 KVGYVRDINGIVVRMGSYVQAS 124 (125)
Q Consensus 103 ~~~~~~Dp~G~~iel~~~~~~~ 124 (125)
..++++|.+|+.|-.+.....+
T Consensus 62 d~l~L~d~~G~~v~~f~~~~~g 83 (99)
T PF02974_consen 62 DGLVLTDADGSVVAFFYRSGDG 83 (99)
T ss_dssp TEEEEE-TTS-EEEEEEEECTT
T ss_pred CEEEEECCCCCEEEEEEccCCe
Confidence 6789999999999887766543
No 306
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=20.30 E-value=2.7e+02 Score=20.40 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=34.2
Q ss_pred EEEE-EECCHHHHHHHHHHCCCeeccCCccCCCCcEEEEEeCCCCCEEEEe
Q 045980 69 EVCF-AYADVDAAYKRAVENGAVPVSEPEDKEWGQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 69 ~~~~-~v~d~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~~iel~ 118 (125)
.++| +-+.+.+.++++...-+..+-.+.-.--|++..-...+||++++-+
T Consensus 259 YmAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRlGQWAIGYVt~dG~IlQTI 309 (563)
T KOG1785|consen 259 YMAFLTYDEVKARLQKYIKKPGSYIFRLSCTRLGQWAIGYVTADGNILQTI 309 (563)
T ss_pred eeEEeeHHHHHHHHHHHhcCCCceEEeeccCcccceeEEEEcCCCceeecc
Confidence 4455 4478888888887666666655554445777777778999987644
No 307
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=20.26 E-value=1.2e+02 Score=18.17 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHhcCCeEEe
Q 045980 5 DVAKSVAFYAKAFDYTVRT 23 (125)
Q Consensus 5 d~~~a~~FY~~~lg~~~~~ 23 (125)
+-..|..||++ +||+...
T Consensus 136 ~N~~Ai~lY~~-~GF~~~~ 153 (177)
T COG0456 136 SNEAAIGLYRK-LGFEVVK 153 (177)
T ss_pred CChHHHHHHHH-cCCEEEe
Confidence 34589999997 9999864
No 308
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=20.21 E-value=1.9e+02 Score=16.61 Aligned_cols=40 Identities=18% Similarity=0.073 Sum_probs=23.0
Q ss_pred ECCHHHHHH----HHHHCCCeeccCCccCCCCcEEEEEeCCCCC
Q 045980 74 YADVDAAYK----RAVENGAVPVSEPEDKEWGQKVGYVRDINGI 113 (125)
Q Consensus 74 v~d~~~~~~----~~~~~g~~~~~~~~~~~~g~~~~~~~Dp~G~ 113 (125)
...+|..++ .+...|+.+..+.-...--.....++.|.|+
T Consensus 15 ~~~LD~~~~~Ive~akrtg~~v~GPiPLPTk~~~~tvlrsP~~~ 58 (104)
T COG0051 15 HRLLDQVCREIVETAKRTGADVKGPIPLPTKRERVTVLRSPHGE 58 (104)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeCCccCCCceEEEEEEeCCCCC
Confidence 345555544 4456777766543322223367778888876
No 309
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=20.06 E-value=2.4e+02 Score=17.58 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=31.3
Q ss_pred HHHHHHHHHHCCCeeccCCcc----CCCCcEEEEEeC-CCCCEEEEeeeccCC
Q 045980 77 VDAAYKRAVENGAVPVSEPED----KEWGQKVGYVRD-INGIVVRMGSYVQAS 124 (125)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~----~~~g~~~~~~~D-p~G~~iel~~~~~~~ 124 (125)
+.+..+++.+.|+.+..-.+. ...+.+.+.++| ++|..+.|.|...++
T Consensus 16 L~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~g 68 (159)
T PF10649_consen 16 LAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPG 68 (159)
T ss_pred HHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCC
Confidence 345567788899876433222 223335666777 459999999988765
No 310
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=20.05 E-value=1.6e+02 Score=17.45 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.4
Q ss_pred CcEEEEEeCCCCCEEEEe
Q 045980 101 GQKVGYVRDINGIVVRMG 118 (125)
Q Consensus 101 g~~~~~~~Dp~G~~iel~ 118 (125)
|.+..|+.|+.|...|+.
T Consensus 27 G~K~Lfl~d~~g~~~e~~ 44 (120)
T PF05301_consen 27 GYKKLFLLDERGQHREIE 44 (120)
T ss_pred eeeeEEEEcCCCCEEEec
Confidence 668899999999998853
Done!