BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045984
         (127 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PK9|B Chain B, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
           Phosphate-responsive Signal Transduction Pathway
 pdb|2PK9|D Chain D, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
           Phosphate-responsive Signal Transduction Pathway
 pdb|2PMI|B Chain B, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
           Phosphate- Responsive Signal Transduction Pathway With
           Bound Atp-Gamma-S
 pdb|2PMI|D Chain D, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
           Phosphate- Responsive Signal Transduction Pathway With
           Bound Atp-Gamma-S
          Length = 293

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 1   QYIERIFKYSRCSPSCSVVAYIYLDRFLQRI--SGCLTRLNVHRLLITSFLVAAKFVDDE 58
            Y  R+ K+S     C ++  +Y    LQ +     L  L  HR L+T+  VA K + D 
Sbjct: 79  NYFIRLTKFSSLE-HCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDS 137

Query: 59  CYNNAYYAKIGGISTAEMNKLELNFLFTLEFKL 91
              NA+YAK+GG+   E+N LE +FL  + +++
Sbjct: 138 FSTNAHYAKVGGVRCHELNILENDFLKRVNYRI 170


>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
           Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
           BOUND To The Transport Signal Sequence Of Vesicular
           Stomatitis Virus Glycoprotein
 pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
           Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
           Bound To The Transport Signal Sequence Of The Snare
           Protein Bet1
          Length = 748

 Score = 26.2 bits (56), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 5   RIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSF 48
           RI  ++ C P  S +  ++L   +Q ISG L  + V R +  S 
Sbjct: 472 RIRVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVDRSMTASL 515


>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
           Complexed With The Snare Protein Sec22b
 pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
           Complexed With The Snare Protein Sec22b
          Length = 753

 Score = 26.2 bits (56), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 5   RIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSF 48
           RI  ++ C P  S +  ++L   +Q ISG L  + V R +  S 
Sbjct: 477 RIRVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVDRSMTASL 520


>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
 pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
 pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
 pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
 pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
 pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
 pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
 pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
          Length = 381

 Score = 25.0 bits (53), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 85  FTLEFKLHVTTEVFAKYCSQLDMEGAAAEESWVP 118
           +TLE K   TT+VF  Y + +  E   A E+ +P
Sbjct: 261 YTLEGKARGTTQVFEAYSAFIGREQRVALETLLP 294


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,407,335
Number of Sequences: 62578
Number of extensions: 108290
Number of successful extensions: 257
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 4
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)