BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045984
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q75HV0|CCP31_ORYSJ Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1
Length = 236
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 83/107 (77%)
Query: 2 YIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYN 61
Y ERIFKYS CSPSC V+A IY++R+LQ+ +T L+VHRLLITS +VAAKF DD +N
Sbjct: 82 YAERIFKYSECSPSCFVLALIYMERYLQQPHVYMTSLSVHRLLITSVVVAAKFTDDAFFN 141
Query: 62 NAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDME 108
NA+YA++GGIST EMN+LEL+ LF L+F+L V E F YC QL+ E
Sbjct: 142 NAFYARVGGISTVEMNRLELDLLFNLDFRLKVDLETFGSYCLQLEKE 188
>sp|Q7XC35|CCP41_ORYSJ Cyclin-P4-1 OS=Oryza sativa subsp. japonica GN=CYCP4-1 PE=2 SV=1
Length = 212
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
Query: 2 YIERIFKYSRCSPSCSVVAYIYLDRFLQRISG-CLTRLNVHRLLITSFLVAAKFVDDECY 60
Y+ERIF+++ CSPSC VVAYIYLDRFL+R + NVHRLLITS L A KFVDD CY
Sbjct: 60 YLERIFRFANCSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFVDDICY 119
Query: 61 NNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDMEGAAAEESWVPDT 120
NNAY+A++GGIS EMN LE++FLF + F L+VT FA YC+ L E E+ D
Sbjct: 120 NNAYFARVGGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEMTYLEQPPAVDL 179
Query: 121 SK 122
+
Sbjct: 180 PR 181
>sp|O80513|CCU41_ARATH Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1
Length = 202
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/108 (65%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Query: 2 YIERIFKYSRCSPSCSVVAYIYLDRFLQR-ISGCLTRLNVHRLLITSFLVAAKFVDDECY 60
Y+ERIFKY+ CSPSC VVAY+YLDRF R S + NVHRLLITS +VAAKF+DD Y
Sbjct: 57 YLERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYY 116
Query: 61 NNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDME 108
NNAYYAK+GGIST EMN LEL+FLF L F+L+VT F Y S L E
Sbjct: 117 NNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKE 164
>sp|Q9LY16|CCU42_ARATH Cyclin-U4-2 OS=Arabidopsis thaliana GN=CYCU4-2 PE=1 SV=1
Length = 216
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 83/108 (76%), Gaps = 1/108 (0%)
Query: 2 YIERIFKYSRCSPSCSVVAYIYLDRFLQRISGC-LTRLNVHRLLITSFLVAAKFVDDECY 60
Y+ERIFKY+ CS SC +VAYIYLDRF+Q+ + NVHRL+ITS LV+AKF+DD CY
Sbjct: 67 YMERIFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCY 126
Query: 61 NNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDME 108
NNA+YAK+GGI+T EMN LEL+FLF + F+L+VT + YCS L E
Sbjct: 127 NNAFYAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQRE 174
>sp|Q8LB60|CCU31_ARATH Cyclin-U3-1 OS=Arabidopsis thaliana GN=CYCU3-1 PE=1 SV=2
Length = 221
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 81/109 (74%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECY 60
Y++RIFKYS CSPSC V+A+IY+D FL + L LNVHRL+IT+ ++AAK DD +
Sbjct: 77 HYLDRIFKYSCCSPSCFVIAHIYIDHFLHKTRALLKPLNVHRLIITTVMLAAKVFDDRYF 136
Query: 61 NNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDMEG 109
NNAYYA++GG++T E+N+LE+ LFTL+FKL V + F +C QL+ +
Sbjct: 137 NNAYYARVGGVTTRELNRLEMELLFTLDFKLQVDPQTFHTHCCQLEKQN 185
>sp|Q9FKF6|CCU43_ARATH Cyclin-U4-3 OS=Arabidopsis thaliana GN=CYCU4-3 PE=1 SV=1
Length = 219
Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 2 YIERIFKYSRCSPSCSVVAYIYLDRFLQRISGC-LTRLNVHRLLITSFLVAAKFVDDECY 60
Y+ERIF+Y+ CS SC +VAYIYLDRF+++ + NVHRL+ITS LV+AKF+DD Y
Sbjct: 65 YLERIFEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSY 124
Query: 61 NNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDMEGA 110
NN YYAK+GGIS EMN LEL+FLF + F+L+VT F YC L E A
Sbjct: 125 NNEYYAKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMA 174
>sp|Q9SHD3|CCU21_ARATH Cyclin-U2-1 OS=Arabidopsis thaliana GN=CYCU2-1 PE=1 SV=1
Length = 222
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 2 YIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRL-NVHRLLITSFLVAAKFVDDECY 60
Y+ERIF+Y++ PS VVAY+Y+DRF Q G L NVHRLLIT+ ++A+K+V+D Y
Sbjct: 74 YLERIFRYTKAGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLLITTIMIASKYVEDMNY 133
Query: 61 NNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDME 108
N+Y+AK+GG+ T ++N LEL FLF + FKLHV VF YC L+ E
Sbjct: 134 KNSYFAKVGGLETEDLNNLELEFLFLMGFKLHVNVSVFESYCCHLERE 181
>sp|Q9M205|CCU22_ARATH Cyclin-U2-2 OS=Arabidopsis thaliana GN=CYCU2-2 PE=1 SV=1
Length = 230
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 2 YIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRL-NVHRLLITSFLVAAKFVDDECY 60
Y+ RIF+Y++ PS VVAY+Y+DRF Q G L NVHRLLIT+ ++A+K+V+D Y
Sbjct: 80 YLGRIFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLITTIMIASKYVEDLNY 139
Query: 61 NNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDME 108
N+Y+AK+GG+ T ++NKLEL FLF + FKLHV VF YC L+ E
Sbjct: 140 RNSYFAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESYCCHLERE 187
>sp|Q9LJ45|CCU11_ARATH Cyclin-U1-1 OS=Arabidopsis thaliana GN=CYCU1-1 PE=1 SV=1
Length = 210
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLT-RLNVHRLLITSFLVAAKFVDDEC 59
+Y+ERI+KY++CSP+C VV Y+Y+DR + G L LNVHRLL+T ++AAK +DD
Sbjct: 71 KYLERIYKYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVH 130
Query: 60 YNNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDME 108
YNN +YA++GG+S A++NK+EL LF L+F++ V+ VF YC L+ E
Sbjct: 131 YNNEFYARVGGVSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKE 179
>sp|Q7FAT5|CCP21_ORYSJ Cyclin-P2-1 OS=Oryza sativa subsp. japonica GN=CYCP2-1 PE=2 SV=1
Length = 217
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 74/108 (68%), Gaps = 2/108 (1%)
Query: 2 YIERIFKYSRCSPSCSVVAYIYLDRFLQRISGC-LTRLNVHRLLITSFLVAAKFVDDECY 60
++ER +Y+ SP VVAY YLDR L+R G + N RLL T+ LVA+KFV+D Y
Sbjct: 75 FLERFSRYANVSPQVYVVAYAYLDR-LRRGDGVRVVSANAQRLLTTAILVASKFVEDRNY 133
Query: 61 NNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDME 108
N+Y+A +GG++ AE++ LEL+FLF ++F+L+V+ VF YC L+ E
Sbjct: 134 KNSYFAAVGGLTAAELSSLELDFLFLMQFRLNVSVSVFQSYCRHLERE 181
>sp|Q0J9W0|CCP11_ORYSJ Cyclin-P1-1 OS=Oryza sativa subsp. japonica GN=CYCP1-1 PE=3 SV=2
Length = 264
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFL-QRISGCLTRLNVHRLLITSFLVAAKFVDDEC 59
QY+ER+ +Y+ P C VVAY Y+D +R + + NVHRLL+ LVA+K +DD
Sbjct: 78 QYLERVHRYAGLEPECYVVAYAYVDMAAHRRPAAAVASRNVHRLLLACLLVASKVLDDFH 137
Query: 60 YNNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDME 108
+NNA++A++GG+S AEMN+LEL L L+F++ ++ V+ Y L+ E
Sbjct: 138 HNNAFFARVGGVSNAEMNRLELELLAVLDFEVMLSHRVYELYREHLEKE 186
>sp|P40186|PCL7_YEAST PHO85 cyclin-7 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL7 PE=1 SV=3
Length = 285
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRI------SGCLTRL------NVHRLLITSF 48
QY+ERI KY + + +Y DR + +GC +L N+HRLLIT
Sbjct: 162 QYLERIQKYCPTTNDIFLSLLVYFDRISKNYGHSSERNGCAKQLFVMDSGNIHRLLITGV 221
Query: 49 LVAAKFVDDECYNNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQL 105
+ KF+ D Y+N+ YAK+GGIS E+N LEL FL +FKL V+ E KY + L
Sbjct: 222 TICTKFLSDFFYSNSRYAKVGGISLQELNHLELQFLILCDFKLLVSVEEMQKYANLL 278
>sp|O42979|YGZA_SCHPO PHO85 cyclin-like protein C20F10.10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC20F10.10 PE=3 SV=1
Length = 243
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 2 YIERIFKYSRCSPSCSVVAYIYLDRFLQRI--SGCLTRLNVHRLLITSFLVAAKFVDDEC 59
Y+ RI KY + + IYLDR + + + N+HR LI F A+KF D
Sbjct: 85 YLTRILKYCPATNDVFLSVLIYLDRIVHHFHFTVFINSFNIHRFLIAGFTAASKFFSDVF 144
Query: 60 YNNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKY 101
Y N+ YAK+GGI E+N LEL+F +F L ++ E Y
Sbjct: 145 YTNSRYAKVGGIPLHELNHLELSFFVFNDFNLFISLEDLQAY 186
>sp|Q06712|PREG_NEUCR Nuc-1 negative regulatory protein preg OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=preg PE=1 SV=1
Length = 483
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 2 YIERIFKYSRCSPSCSVVAYIYLDRFLQRISG-CLTRLNVHRLLITSFLVAAKFVDDECY 60
Y+ R+ K++ SP + Y+DR S + L VHR LIT+ VAAK + D
Sbjct: 319 YLHRLAKHAYLSPPILLSMVYYIDRLCALYSDFTINTLTVHRFLITAATVAAKGLSDSFL 378
Query: 61 NNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKY 101
N YA++GG+ AE+N LEL FL +++K+ +V Y
Sbjct: 379 TNTLYARVGGVRVAELNMLELEFLHRVDWKIVPDPDVLVAY 419
>sp|P40038|PCL6_YEAST PHO85 cyclin-6 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL6 PE=1 SV=1
Length = 420
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 39 NVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVF 98
N+HRL+I V+ KF+ D Y+N+ Y+++GGIS E+N LEL FL +F+L ++
Sbjct: 336 NIHRLIIAGITVSTKFLSDFFYSNSRYSRVGGISLQELNHLELQFLVLCDFELLISVNEL 395
Query: 99 AKYCSQL 105
+Y L
Sbjct: 396 QRYADLL 402
>sp|Q8BGU5|CCNY_MOUSE Cyclin-Y OS=Mus musculus GN=Ccny PE=1 SV=1
Length = 341
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECY 60
+++ +F ++ + C++V +YL+R L + N R+++ + L+A+K DD+
Sbjct: 173 RFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAV 232
Query: 61 NNAYYAKI-GGISTAEMNKLELNFLFTLEFKLHVTTEVFAKY 101
N Y +I I+ +MN+LE FL L+F ++V + V+AKY
Sbjct: 233 WNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKY 274
>sp|Q8ND76|CCNY_HUMAN Cyclin-Y OS=Homo sapiens GN=CCNY PE=1 SV=2
Length = 341
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECY 60
+++ +F ++ + C++V +YL+R L + N R+++ + L+A+K DD+
Sbjct: 173 RFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAV 232
Query: 61 NNAYYAKI-GGISTAEMNKLELNFLFTLEFKLHVTTEVFAKY 101
N Y +I I+ +MN+LE FL L+F ++V + V+AKY
Sbjct: 233 WNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKY 274
>sp|Q8N7R7|CCYL1_HUMAN Cyclin-Y-like protein 1 OS=Homo sapiens GN=CCNYL1 PE=1 SV=2
Length = 359
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 61/104 (58%), Gaps = 5/104 (4%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQ--RISGCLTRLNVHRLLITSFLVAAKFVDDE 58
+++ +F ++ + C++V +YL+R L I C T N R+++ + L+A+K DD+
Sbjct: 193 RFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPT--NWKRIVLGAILLASKVWDDQ 250
Query: 59 CYNNAYYAKI-GGISTAEMNKLELNFLFTLEFKLHVTTEVFAKY 101
N Y +I I+ +MN++E +FL L+F ++V V+AKY
Sbjct: 251 AVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKY 294
>sp|Q08CI4|CCYL1_DANRE Cyclin-Y-like protein 1 OS=Danio rerio GN=ccnyl1 PE=2 SV=1
Length = 339
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECY 60
+++ +F ++ + C++V +YL+R L + N R+++ + L+A+K DD+
Sbjct: 171 RFVRTLFSAAQLTAECAIVTLVYLERLLTYAELDICPSNWKRIVLGAILLASKVWDDQAV 230
Query: 61 NNAYYAKI-GGISTAEMNKLELNFLFTLEFKLHVTTEVFAKY 101
N Y +I I+ +MN++E +FL L+F ++V V+AKY
Sbjct: 231 WNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKY 272
>sp|Q28EL0|CCYL1_XENTR Cyclin-Y-like protein 1 OS=Xenopus tropicalis GN=ccnyl1 PE=2 SV=1
Length = 343
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECY 60
+++ +F ++ + C++V +YL+R L + N R+++ + L+A+K DD+
Sbjct: 175 RFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPSNWKRIVLGAILLASKVWDDQAV 234
Query: 61 NNAYYAKI-GGISTAEMNKLELNFLFTLEFKLHVTTEVFAKY 101
N Y +I I+ +MN++E +FL L+F ++V V+AKY
Sbjct: 235 WNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKY 276
>sp|Q6NRF4|CCY1B_XENLA Cyclin-Y-like protein 1-B OS=Xenopus laevis GN=ccnyl1-b PE=2 SV=1
Length = 343
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECY 60
+++ +F ++ + C++V +YL+R L + N R+++ + L+A+K DD+
Sbjct: 175 RFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPSNWKRIVLGAILLASKVWDDQAV 234
Query: 61 NNAYYAKI-GGISTAEMNKLELNFLFTLEFKLHVTTEVFAKY 101
N Y +I I+ +MN++E +FL L+F ++V V+AKY
Sbjct: 235 WNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKY 276
>sp|Q5U5D0|CCY1A_XENLA Cyclin-Y-like protein 1-A OS=Xenopus laevis GN=ccnyl1-a PE=2 SV=1
Length = 339
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECY 60
+++ +F ++ + C++V +YL+R L + N ++++ + L+++K DD+
Sbjct: 171 RFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPSNWKQIVLGAILLSSKVWDDQAV 230
Query: 61 NNAYYAKI-GGISTAEMNKLELNFLFTLEFKLHVTTEVFAKY 101
N Y +I I+ +MN++E +FL L+F ++VT V+AKY
Sbjct: 231 WNVDYCQIMKDITVEDMNEMERHFLELLQFNINVTASVYAKY 272
>sp|P34624|YOJ1_CAEEL Uncharacterized cyclin-like protein ZK353.1 OS=Caenorhabditis
elegans GN=ZK353.1 PE=1 SV=3
Length = 357
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECY 60
+++ +F ++ + C+++ +Y++R L L N R+++ S ++A+K DD+
Sbjct: 193 RFVRNLFSSAQLTAECAIITLVYIERLLNYAEMDLCPSNWRRVVLGSIMLASKVWDDQAV 252
Query: 61 NNAYYAKI-GGISTAEMNKLELNFLFTLEFKLHVTTEVFAKY 101
N Y +I + +MN+LE FL L+F + V + V+AKY
Sbjct: 253 WNVDYCQILRDTNVDDMNELERRFLECLDFNIEVPSSVYAKY 294
>sp|Q5ZJH7|CNPD1_CHICK Protein CNPPD1 OS=Gallus gallus GN=CNPPD1 PE=2 SV=1
Length = 439
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFV----- 55
+Y+ + + + SP ++A +Y++R R L +++ L + S +VA+K++
Sbjct: 78 KYVSHVSREACISPCSMMLALVYIERLRHRNPEYLQQISSSDLFLISMMVASKYLYDEGE 137
Query: 56 DDECYNNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDMEGAAAEES 115
++E +N+ + A G + MN LE+NFL +++ L+ + S L+ A +
Sbjct: 138 EEEVFNDEWGAA-GKVDVQTMNTLEMNFLSAIDWSLYTDPRELFEVLSWLEGRVAEKQGM 196
Query: 116 W 116
W
Sbjct: 197 W 197
>sp|P20052|PHO80_YEAST PHO85 cyclin PHO80 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PHO80 PE=1 SV=3
Length = 293
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRI--SGCLTRLNVHRLLITSFLVAAKFVDDE 58
Y R+ K+S C ++ +Y LQ + L L HR L+T+ VA K + D
Sbjct: 79 NYFIRLTKFSSLE-HCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDS 137
Query: 59 CYNNAYYAKIGGISTAEMNKLELNFLFTLEFKL 91
NA+YAK+GG+ E+N LE +FL + +++
Sbjct: 138 FSTNAHYAKVGGVRCHELNILENDFLKRVNYRI 170
>sp|Q8K158|CNPD1_MOUSE Protein CNPPD1 OS=Mus musculus GN=Cnppd1 PE=2 SV=1
Length = 407
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFV----- 55
+Y+ + + + SP ++A +Y++R R L ++ L + S +VA+K++
Sbjct: 80 KYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLISMMVASKYLYDEGE 139
Query: 56 DDECYNNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTT-EVF 98
++E +N+ + A GG++ A +N LE +FL ++++L+ E+F
Sbjct: 140 EEEVFNDEWGAA-GGVAVATLNALERSFLSAMDWRLYTDPREIF 182
>sp|Q5E9J2|CNPD1_BOVIN Protein CNPPD1 OS=Bos taurus GN=CNPPD1 PE=2 SV=1
Length = 411
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFV----- 55
+Y+ + + + SP ++A +Y++R R L ++ L + S +VA+K++
Sbjct: 80 KYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLISMMVASKYLYDEGE 139
Query: 56 DDECYNNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDMEGAAAEE 114
++E +N+ + A GG++ +N LE FL ++++L+ + S L EG AE+
Sbjct: 140 EEEVFNDEWGAA-GGVAVPTLNALERGFLSAMDWRLYTDPREIFEVLSWL--EGCVAEQ 195
>sp|Q4R871|CCYL2_MACFA Cyclin-Y-like protein 2 OS=Macaca fascicularis GN=CCNYL2 PE=2 SV=1
Length = 360
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECY 60
+++ +FK R + ++V+ IY++R + + N R+++ + L+A+K D
Sbjct: 194 RFVRTLFKAIRLTAEFAIVSLIYIERLVSYADIDICPTNWKRIVLGAILLASKVWSDMAV 253
Query: 61 NNAYYAKI-GGISTAEMNKLELNFLFTLEFKLHVTTEVFAKY 101
N Y K+ I+ EMN+LE FL + + + VT V++++
Sbjct: 254 WNEDYCKLFENITVEEMNELERQFLKLINYNIGVTGSVYSRF 295
>sp|Q5T2Q4|CCYL2_HUMAN Cyclin-Y-like protein 2 OS=Homo sapiens GN=CCNYL2 PE=2 SV=2
Length = 361
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECY 60
+++ +FK R + ++V+ IY++R + + N R+++ + L+A+K D
Sbjct: 195 RFVRTLFKAMRLTAEFAIVSLIYIERLVSYADIDICPTNWKRIVLGAILLASKVWSDMAV 254
Query: 61 NNAYYAKI-GGISTAEMNKLELNFLFTLEFKLHVTTEVFAKY 101
N Y K+ I+ EMN+LE FL + + +T V++++
Sbjct: 255 WNEDYCKLFKNITVEEMNELERQFLKLINYNNSITNSVYSRF 296
>sp|Q6P7B2|CNPD1_RAT Protein CNPPD1 OS=Rattus norvegicus GN=Cnppd1 PE=2 SV=1
Length = 408
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFV----- 55
+Y+ + + + SP ++A +Y++R R L ++ L + S +VA+K++
Sbjct: 80 KYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLISMMVASKYLYDEGE 139
Query: 56 DDECYNNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTT-EVF 98
++E +N+ + A GG++ +N LE +FL ++++L+ E+F
Sbjct: 140 EEEVFNDEWGAA-GGVAVPTLNALERSFLSAMDWRLYTDPREIF 182
>sp|Q9BV87|CNPD1_HUMAN Protein CNPPD1 OS=Homo sapiens GN=CNPPD1 PE=2 SV=2
Length = 410
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFV----- 55
+Y+ + + + SP ++A +Y++R R L ++ L + S +VA+K++
Sbjct: 80 KYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLISMMVASKYLYDEGE 139
Query: 56 DDECYNNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDMEGAAAEES 115
++E +N+ + A GG++ +N LE FL +++ L+ + S L+ A +
Sbjct: 140 EEEVFNDEWGAA-GGVAVPTLNALERGFLSAMDWHLYTDPREIFEVLSWLESCVAEQQGR 198
Query: 116 W 116
W
Sbjct: 199 W 199
>sp|Q5R4U5|CNPD1_PONAB Protein CNPPD1 OS=Pongo abelii GN=CNPPD1 PE=2 SV=1
Length = 410
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFV----- 55
+Y+ + + + SP ++A +Y++R R L ++ L + S +VA+K++
Sbjct: 80 KYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLISMMVASKYLYDEGE 139
Query: 56 DDECYNNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTT-EVF 98
++E +N+ + A GG++ +N LE FL +++ L+ E+F
Sbjct: 140 EEEVFNDEWGAA-GGVAVPTLNALERGFLSAMDWHLYTDPREIF 182
>sp|P0C7X3|CCYL3_HUMAN Putative cyclin-Y-like protein 3 OS=Homo sapiens GN=CCNYL3 PE=2
SV=1
Length = 344
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 6 IFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYY 65
+F+ + + C++VA +Y+ R L + L N ++++ + L+A+K + +
Sbjct: 83 LFQVIKLTAPCAIVALVYIKRLLTSANIDLCPTNWKKIVLGTMLLASKVWRNHGLWSVDD 142
Query: 66 AKIGGISTAE-MNKLELNFLFTLEFKLHVTTEVFAKY 101
++ + E M+K+E FL LEF +HV+ V+AKY
Sbjct: 143 SQNSKDTAVENMSKMEKCFLELLEFNIHVSASVYAKY 179
>sp|Q08966|PCL8_YEAST PHO85 cyclin-8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL8 PE=1 SV=1
Length = 492
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 41 HRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLELNFLFTLEFK-LHVTTEVFA 99
HR++I++ +A K ++D ++ Y K+ GIS + KLE++F+ ++ F L +T E
Sbjct: 417 HRIIISTIRIATKLLEDFVHSQNYICKVFGISKRLLTKLEISFMASVNFDGLMITCEKLE 476
Query: 100 KYCSQLD 106
K LD
Sbjct: 477 KTLHILD 483
>sp|P53124|PCL10_YEAST PHO85 cyclin-10 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL10 PE=1 SV=1
Length = 433
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 2 YIERIFKYSRCSPSCSVVAYIYLDR-FLQRISGCLTRLN-------VHRLLITSFLVAAK 53
+++RI P+ +VA +D FL R + +L VHR++I + ++ K
Sbjct: 313 FLKRIQDKCEYQPTVYLVATFLIDTLFLTRDGNNILQLKLNLQEKEVHRMIIAAVRLSTK 372
Query: 54 FVDDECYNNAYYAKIGGISTAEMNKLELNFLF 85
++D +++ Y++K+ GIS + KLE++ L
Sbjct: 373 LLEDFVHSHEYFSKVCGISKRLLTKLEVSLLI 404
>sp|O14336|MUG80_SCHPO Meiotically up-regulated gene 80 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug80 PE=1 SV=1
Length = 461
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 43 LLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLELNFLFTLEFKL 91
LL T+ ++A KF+DD + N ++++ G TA +N E ++L ++ + L
Sbjct: 336 LLTTALILANKFLDDNTFTNQSWSQVTGFRTALLNSFEQDWLASMSWNL 384
>sp|P24867|PCL1_YEAST PHO85 cyclin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL1 PE=1 SV=1
Length = 279
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 2 YIERIFKYSRCSPSCSVVAYIYLD---RFLQRISGCLTRLNVHRLLITSFLVAAKFVDDE 58
+I R+ +Y+ + A YL+ R L R + L +HR+ + +++AKF +D
Sbjct: 58 FITRLVRYTNVYTPTLLTAACYLNKLKRILPRDATGLPS-TIHRIFLACLILSAKFHNDS 116
Query: 59 CYNNAYYAK-IGGISTAE-MNKLELNFLFTLEFKLHVTTE 96
N ++A+ G+ T E +N +E L L + L V TE
Sbjct: 117 SPLNKHWARYTDGLFTLEDINLMERQLLQLLNWDLRVNTE 156
>sp|P25010|CCNAL_DAUCA G2/mitotic-specific cyclin C13-1 (Fragment) OS=Daucus carota PE=2
SV=1
Length = 341
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 14 PSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKI--GGI 71
P +A Y+DR+L L R + L ++SFL+A+K+ + + N A + I
Sbjct: 128 PETLYLAISYVDRYLS--VNVLNRQKLQLLGVSSFLIASKYEEIKPKNVADFVDITDNTY 185
Query: 72 STAEMNKLELNFLFTLEFKLHVTT 95
S E+ K+E + L TL+F++ T
Sbjct: 186 SQQEVVKMEADLLKTLKFEMGSPT 209
>sp|P30283|CGS5_YEAST S-phase entry cyclin-5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CLB5 PE=1 SV=1
Length = 435
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 11 RCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKI-- 68
+C P ++ +DRFL + + +L + L +TS +AAKF + A YA I
Sbjct: 213 QCYPETLFLSINLMDRFLAKNKVTMNKLQL--LAVTSLFIAAKFEEVNLPKLAEYAYITD 270
Query: 69 GGISTAEMNKLELNFLFTLEFKL 91
G S ++ E+ L +LEF +
Sbjct: 271 GAASKNDIKNAEMFMLTSLEFNI 293
>sp|Q8VZQ9|REM3_ARATH B3 domain-containing protein REM3 OS=Arabidopsis thaliana GN=REM3
PE=2 SV=1
Length = 492
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 54 FVDDECYNNAYYAKIGGISTAEMNKLELNFLFTLEFKLHVTTEVFAKYCSQLDMEG-AAA 112
+V +Y G I E NKL+ FTLEF T K+CS+ +E A
Sbjct: 332 YVSSSKQRREFYMAHGWIRFCEANKLKTGETFTLEFVRGEGTTPMLKFCSEAKIEQEEAP 391
Query: 113 EESWVP 118
EE P
Sbjct: 392 EERGTP 397
>sp|Q5A4H9|SSN8_CANAL RNA polymerase II holoenzyme cyclin-like subunit OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=SSN8 PE=3
SV=1
Length = 434
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 20 AYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDEC 59
A IYL RFL R+S L +NV+ L+ T VA K +EC
Sbjct: 78 AEIYLTRFLTRVS--LKEINVYLLITTCIYVACKI--EEC 113
>sp|P25693|PCL2_YEAST PHO85 cyclin-2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL2 PE=1 SV=2
Length = 308
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNV--HRLLITSFLVAAKFVDDE 58
++I R+ K+S + +YL + I + + HR+ + ++AAK ++D
Sbjct: 51 KFINRLIKHSNVQTPTLMATSVYLAKLRSIIPSNVYGIETTRHRIFLGCLILAAKTLNDS 110
Query: 59 CYNNAYYAKI--GGISTAEMNKLELNFLFTLEFKLHVTTE 96
N ++A+ G + E+N +E L ++ + ++T+
Sbjct: 111 SPLNKHWAEYTDGLLILREVNTIERELLEYFDWDVTISTD 150
>sp|Q95JM8|CC164_MACFA Coiled-coil domain-containing protein 164 OS=Macaca fascicularis
GN=CCDC164 PE=2 SV=1
Length = 740
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 57 DECYN---NAYYAKIGGISTAEMNKLELNFLFTLEFKLH-VTTEVFAKYCSQLDMEGAAA 112
+ECY +A ++ +G S ++ KL +NF L+++ H +++ + K CSQ ME A+
Sbjct: 521 NECYLLRLDAIFSALGIESEDDLYKL-VNFF--LKYRAHRLSSSLQIKSCSQASMEKASM 577
Query: 113 EES 115
EE+
Sbjct: 578 EET 580
>sp|A3N214|MLTF_ACTP2 Membrane-bound lytic murein transglycosylase F OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=mltF PE=3
SV=2
Length = 483
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 82 NFLFTLEFKLHVTTEVFAKYCSQLDMEGAAA----EESWVPDTSKPTG 125
++L ++ L +F KYC L+ + AA E W P+ + PTG
Sbjct: 277 SYLKAIKLVLPKYQSLFEKYCGDLEWQMLAAIAYQESHWDPNATSPTG 324
>sp|Q55F19|CCNH_DICDI Putative cyclin-H OS=Dictyostelium discoideum GN=cycH PE=3 SV=1
Length = 286
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 17 SVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEM 76
S A IY+ RF + S + + ++++ +A K +D + YY+ I S +++
Sbjct: 76 SAPAIIYIKRFYLKNS--IMQYGAKLVMLSCLFIACK-TEDNHLDIDYYSNITKASPSDI 132
Query: 77 NKLELNFLFTLEFKLHVTTEVFAKYCSQLDMEGAAA 112
LE+ L +L F L V Y LD+ +A
Sbjct: 133 TNLEIIILESLNFNLIVYHPFRPMYGYILDINDNSA 168
>sp|Q9HE63|SSN8_NEUCR RNA polymerase II holoenzyme cyclin-like subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=ssn-8 PE=3 SV=2
Length = 345
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDEC 59
Q I R+ K A +Y+ RF ++ + R N H +L+T+ +A K +EC
Sbjct: 53 QQINRLGKRMGLRQQALATAQVYIKRFYTKVE--IRRTNPHHVLVTALYLACKM--EEC 107
>sp|A3LPX1|SSN8_PICST RNA polymerase II holoenzyme cyclin-like subunit OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=SSN8 PE=3 SV=2
Length = 346
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 20 AYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDEC 59
A IYL+RFL R+S L +NV+ L+ T VA K +EC
Sbjct: 78 AEIYLNRFLTRVS--LKEINVYLLVTTCLYVACKI--EEC 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,691,250
Number of Sequences: 539616
Number of extensions: 1381335
Number of successful extensions: 3392
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3331
Number of HSP's gapped (non-prelim): 50
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)