Query 045984
Match_columns 127
No_of_seqs 128 out of 853
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 12:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pmi_B PHO85 cyclin PHO80, ami 100.0 1.3E-33 4.4E-38 217.5 10.5 105 1-105 79-184 (293)
2 1f5q_B Gamma herpesvirus cycli 99.1 2.7E-10 9.3E-15 86.1 8.2 99 1-101 54-155 (252)
3 2f2c_A Cyclin homolog, V-cycli 99.1 6.9E-10 2.4E-14 83.4 8.9 97 1-99 57-156 (254)
4 3g33_B CCND3 protein; Ser/Thr 99.1 7.1E-10 2.4E-14 85.8 9.1 97 1-99 76-175 (306)
5 1g3n_C V-cyclin; cyclin-depend 99.0 9.1E-10 3.1E-14 82.9 8.9 98 1-100 56-156 (257)
6 2b9r_A Human cyclin B1; cell c 99.0 2.2E-09 7.4E-14 81.4 9.9 97 1-99 43-142 (269)
7 2cch_B Cyclin A2, cyclin-A; co 99.0 1.5E-09 5.1E-14 81.8 8.6 96 1-98 44-142 (260)
8 1w98_B Cyclin E, G1/S-specific 99.0 4.9E-09 1.7E-13 80.1 11.1 100 1-102 55-158 (283)
9 2w96_A G1/S-specific cyclin-D1 99.0 2.3E-09 7.8E-14 81.3 9.1 97 1-99 62-161 (271)
10 1zp2_A RNA polymerase II holoe 98.7 5.5E-08 1.9E-12 72.1 9.1 95 1-98 33-137 (235)
11 2i53_A Cyclin K; cell cycle, t 98.7 3.3E-08 1.1E-12 74.0 7.6 95 1-98 46-154 (258)
12 2ivx_A Cyclin-T2; transcriptio 98.7 1.1E-07 3.6E-12 71.3 9.3 95 1-98 36-149 (257)
13 3rgf_B Cyclin-C; protein kinas 98.6 1.9E-07 6.6E-12 71.3 9.2 103 1-105 48-168 (285)
14 2pk2_A Cyclin-T1, protein TAT; 98.5 8.5E-08 2.9E-12 75.6 4.9 91 1-94 43-151 (358)
15 1jkw_A Cyclin H; cell cycle, c 98.5 1.3E-06 4.5E-11 67.8 10.3 101 2-105 63-174 (323)
16 1c9b_A General transcription f 98.3 6.9E-06 2.4E-10 59.5 10.9 102 1-105 10-113 (207)
17 1ais_B TFB TFIIB, protein (tra 98.2 6.4E-06 2.2E-10 59.3 8.3 103 1-106 14-120 (200)
18 3k7a_M Transcription initiatio 97.0 0.00072 2.5E-08 52.8 4.9 121 2-125 132-276 (345)
19 1ais_B TFB TFIIB, protein (tra 95.5 0.11 3.9E-06 36.7 9.1 88 1-91 110-197 (200)
20 4bbr_M Transcription initiatio 95.5 0.062 2.1E-06 41.9 8.0 121 2-125 132-276 (345)
21 1c9b_A General transcription f 94.7 0.14 4.7E-06 36.5 7.5 80 1-83 104-183 (207)
22 3rgf_B Cyclin-C; protein kinas 92.9 0.39 1.3E-05 36.1 7.4 83 1-88 159-241 (285)
23 2i53_A Cyclin K; cell cycle, t 90.7 2.1 7.3E-05 31.1 9.1 87 1-89 153-251 (258)
24 2ivx_A Cyclin-T2; transcriptio 89.4 3.9 0.00013 29.8 9.6 86 1-87 148-238 (257)
25 2f2c_A Cyclin homolog, V-cycli 86.9 3.5 0.00012 30.0 8.0 84 1-86 154-245 (254)
26 2pk2_A Cyclin-T1, protein TAT; 86.8 2.2 7.4E-05 33.2 7.1 88 1-89 155-247 (358)
27 1zp2_A RNA polymerase II holoe 85.6 1.3 4.4E-05 32.0 5.0 82 1-87 136-218 (235)
28 3g33_B CCND3 protein; Ser/Thr 84.8 2.6 8.8E-05 31.9 6.5 87 1-89 173-267 (306)
29 2b9r_A Human cyclin B1; cell c 79.3 2.1 7.3E-05 31.6 4.1 82 1-85 140-221 (269)
30 2cch_B Cyclin A2, cyclin-A; co 77.3 5.1 0.00017 29.3 5.7 85 1-87 141-226 (260)
31 2w96_A G1/S-specific cyclin-D1 73.4 10 0.00035 27.7 6.5 86 1-88 159-256 (271)
32 1g3n_C V-cyclin; cyclin-depend 72.5 9.9 0.00034 27.6 6.2 84 1-86 153-245 (257)
33 3k7a_M Transcription initiatio 70.6 0.88 3E-05 35.1 0.0 83 1-86 237-319 (345)
34 4bbr_M Transcription initiatio 60.1 1.8 6.3E-05 33.4 0.0 84 1-87 237-320 (345)
35 2bf9_A Pancreatic hormone; tur 40.2 27 0.00092 18.1 2.5 19 93-111 12-30 (36)
36 1zs4_A Regulatory protein CII; 39.7 47 0.0016 20.4 4.1 47 60-108 25-78 (83)
37 2d9v_A Pleckstrin homology dom 36.7 45 0.0015 21.1 4.0 29 94-125 98-126 (130)
38 2l60_A Peptide YY; GPCR ligand 36.2 50 0.0017 17.6 3.3 20 93-112 16-35 (41)
39 1xwr_A Regulatory protein CII; 33.8 25 0.00085 22.2 2.2 47 61-109 25-78 (97)
40 1f5q_B Gamma herpesvirus cycli 33.8 1.3E+02 0.0044 21.7 6.5 82 1-87 151-240 (252)
41 1w98_B Cyclin E, G1/S-specific 30.8 1.6E+02 0.0053 21.5 7.7 41 37-85 198-238 (283)
42 1bba_A Bovine pancreatic polyp 28.5 30 0.001 18.0 1.5 19 93-111 12-30 (36)
43 1g6u_A Domain swapped dimer; d 24.6 57 0.0019 17.3 2.2 15 69-83 15-29 (48)
44 2wh0_Q Pkcev3, protein kinase 23.4 70 0.0024 15.5 2.2 18 73-90 12-29 (31)
45 1f8p_A Neuropeptide Y (PNPY); 23.0 34 0.0011 17.9 1.1 19 93-111 12-30 (37)
46 1k8v_A Neuropeptide F; moniezi 22.8 40 0.0014 17.9 1.4 25 90-114 12-36 (40)
47 2nyx_A Probable transcriptiona 22.3 1.6E+02 0.0054 19.1 4.8 36 92-127 130-165 (168)
48 2dhk_A TBC1 domain family memb 22.0 1.1E+02 0.0036 18.8 3.7 22 94-115 88-109 (119)
49 1und_A Advillin, P92; actin bi 21.9 25 0.00087 18.3 0.5 20 60-79 3-22 (37)
50 2keb_A DNA polymerase subunit 20.9 58 0.002 20.8 2.1 17 70-86 79-95 (101)
No 1
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=100.00 E-value=1.3e-33 Score=217.52 Aligned_cols=105 Identities=28% Similarity=0.384 Sum_probs=101.6
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhc-cCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQ-RISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKL 79 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~-~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~l 79 (127)
+|+.||+++++++++|+++|++||+|+.. .+++.+++.|+||++++|+|+|+||+||.+|+|++||+++|++++|||.|
T Consensus 79 ~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~L 158 (293)
T 2pmi_B 79 NYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNIL 158 (293)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHH
Confidence 59999999999999999999999999999 78899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceeeCHHHHHHHHHHH
Q 045984 80 ELNFLFTLEFKLHVTTEVFAKYCSQL 105 (127)
Q Consensus 80 E~~fL~~Ld~~L~V~~~~~~~~~~~L 105 (127)
|++||.+|||+|+|++++|.+|++.+
T Consensus 159 E~eFL~lLdf~L~V~~ee~~~cy~E~ 184 (293)
T 2pmi_B 159 ENDFLKRVNYRIIPRDHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHTTTTCCSCCTTHHHHHHHHS
T ss_pred HHHHHHHcCCceeeCHHHHHHHHHHH
Confidence 99999999999999999999988755
No 2
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.10 E-value=2.7e-10 Score=86.08 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=83.7
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhcc--CCCHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIG--GISTAEMNK 78 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~--g~s~~eln~ 78 (127)
|++.++....+++++++.+|..|+||+.....+ .....+-+-++|+.||+|+-+-....-+.+..++ .++.+|+.+
T Consensus 54 dWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v--~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~ 131 (252)
T 1f5q_B 54 TWMFCVCKDLRQDNNVFPLAVALLDELFLSTRI--DRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLT 131 (252)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCC--CGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCc--CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHH
Confidence 478889999999999999999999999995433 5677899999999999999887776777776664 489999999
Q ss_pred HHHHHHHhcCCceee-CHHHHHHH
Q 045984 79 LELNFLFTLEFKLHV-TTEVFAKY 101 (127)
Q Consensus 79 lE~~fL~~Ld~~L~V-~~~~~~~~ 101 (127)
||+.+|+.|+|++.+ ++-.|-.+
T Consensus 132 mE~~IL~~L~w~l~~pTp~~FL~~ 155 (252)
T 1f5q_B 132 LEVKSLDTLSWVADRCLSTDLICY 155 (252)
T ss_dssp HHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHCCCccCCCCHHHHHHH
Confidence 999999999999986 46666443
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.05 E-value=6.9e-10 Score=83.40 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=82.2
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccC--CCHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGG--ISTAEMNK 78 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g--~s~~eln~ 78 (127)
|++.++....+++++++.+|..|+||+..... +.....+-+.++|+.+|+|+-+....+-+.+..+++ ++.+|+.+
T Consensus 57 dwl~~v~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~ 134 (254)
T 2f2c_A 57 TWMHLLCESFELDKSVFPLSVSILDRYLCKKQ--GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELIN 134 (254)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSC--CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHccCC--cCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHH
Confidence 47888999999999999999999999998544 356778999999999999998877777777777753 89999999
Q ss_pred HHHHHHHhcCCceeeC-HHHHH
Q 045984 79 LELNFLFTLEFKLHVT-TEVFA 99 (127)
Q Consensus 79 lE~~fL~~Ld~~L~V~-~~~~~ 99 (127)
||+.+|+.|+|++.++ +..|-
T Consensus 135 mE~~IL~~L~~~l~~~tp~~fl 156 (254)
T 2f2c_A 135 QEKDILEALKWDTEAVLATDFL 156 (254)
T ss_dssp HHHHHHHHTTTCCCCCCGGGSH
T ss_pred HHHHHHHHCCCcCCCCCHHHHH
Confidence 9999999999999853 44443
No 4
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.05 E-value=7.1e-10 Score=85.76 Aligned_cols=97 Identities=19% Similarity=0.282 Sum_probs=83.1
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccC--CCHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGG--ISTAEMNK 78 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g--~s~~eln~ 78 (127)
|||.++....+++++++.+|..|+||+..... +.....+.+-++|+.+|+|+-+-...+.+.+..+++ ++.+|+.+
T Consensus 76 dwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~--v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~ 153 (306)
T 3g33_B 76 YWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP--TRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRD 153 (306)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCC--CCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHH
Confidence 57889999999999999999999999999543 357789999999999999998877777777777654 89999999
Q ss_pred HHHHHHHhcCCceeeC-HHHHH
Q 045984 79 LELNFLFTLEFKLHVT-TEVFA 99 (127)
Q Consensus 79 lE~~fL~~Ld~~L~V~-~~~~~ 99 (127)
||+.+|+.|+|++.++ +-.|-
T Consensus 154 mE~~IL~~L~f~l~~~tp~~fl 175 (306)
T 3g33_B 154 WEVLVLGKLKWDLAAVIAHDFL 175 (306)
T ss_dssp HHHHHHHHTTTCCCCCCGGGGH
T ss_pred HHHHHHHHcCCccCCCCHHHHH
Confidence 9999999999999864 44443
No 5
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.04 E-value=9.1e-10 Score=82.90 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=83.4
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhcc--CCCHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIG--GISTAEMNK 78 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~--g~s~~eln~ 78 (127)
|++.++....+++++++.+|..|+||+..... +.....+-+.++|+.+|+|+-+-...+-+.+..++ .++.+|+.+
T Consensus 56 dwl~ev~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~ 133 (257)
T 1g3n_C 56 TWMFSVCQEYNLEPNVVALALNLLDRLLLIKQ--VSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELID 133 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHH
Confidence 47888999999999999999999999998543 35667888999999999999877677777787775 389999999
Q ss_pred HHHHHHHhcCCceee-CHHHHHH
Q 045984 79 LELNFLFTLEFKLHV-TTEVFAK 100 (127)
Q Consensus 79 lE~~fL~~Ld~~L~V-~~~~~~~ 100 (127)
||+.+|+.|+|++.+ ++..|-.
T Consensus 134 mE~~iL~~L~~~l~~~tp~~fl~ 156 (257)
T 1g3n_C 134 QEKELLEKLAWRTEAVLATDVTS 156 (257)
T ss_dssp HHHHHHHHTTTCCCCCCHHHHHH
T ss_pred HHHHHHHHCCCcCCCCCHHHHHH
Confidence 999999999999985 4655544
No 6
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.00 E-value=2.2e-09 Score=81.42 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=83.2
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccC--CCHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGG--ISTAEMNK 78 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g--~s~~eln~ 78 (127)
|++.++..+.+++++++-+|..|+||+..... +.....+-+.++|+.+|+|+-+....+-+.+..+++ ++.+|+.+
T Consensus 43 ~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~--v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~ 120 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS--VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQ 120 (269)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC--CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHH
Confidence 47888999999999999999999999999544 356788999999999999998776667777777763 89999999
Q ss_pred HHHHHHHhcCCceee-CHHHHH
Q 045984 79 LELNFLFTLEFKLHV-TTEVFA 99 (127)
Q Consensus 79 lE~~fL~~Ld~~L~V-~~~~~~ 99 (127)
||+.+|+.|+|++.+ ++..|-
T Consensus 121 mE~~IL~~L~f~l~~~tp~~fl 142 (269)
T 2b9r_A 121 MEMKILRALNFGLGRPLPLHFL 142 (269)
T ss_dssp HHHHHHHHTTSCCCCCCHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHH
Confidence 999999999999985 455553
No 7
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=98.99 E-value=1.5e-09 Score=81.83 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=82.3
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhcc--CCCHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIG--GISTAEMNK 78 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~--g~s~~eln~ 78 (127)
|++.++....+++++++.+|..|+||+.....+ .....+-+..+|+.+|+|+-+....+.+.+..++ .++.+|+.+
T Consensus 44 dwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v--~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~ 121 (260)
T 2cch_B 44 DWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV--LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLR 121 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCC--CHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHH
Confidence 578899999999999999999999999995443 4567888999999999999887677777777776 389999999
Q ss_pred HHHHHHHhcCCceeeC-HHHH
Q 045984 79 LELNFLFTLEFKLHVT-TEVF 98 (127)
Q Consensus 79 lE~~fL~~Ld~~L~V~-~~~~ 98 (127)
||+.+|+.|+|++.++ +..|
T Consensus 122 mE~~iL~~L~~~l~~~tp~~f 142 (260)
T 2cch_B 122 MEHLVLKVLTFDLAAPTVNQF 142 (260)
T ss_dssp HHHHHHHHTTTCCCCCCHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHH
Confidence 9999999999999864 5444
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.98 E-value=4.9e-09 Score=80.08 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=84.5
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhcc--CCCHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQR-ISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIG--GISTAEMN 77 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~-~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~--g~s~~eln 77 (127)
|++.++..+.+++++++.+|..|+||+... ..+ .....+-+.++|+.+|+|+-+-...+.+.+..++ .++.+|+.
T Consensus 55 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v--~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~ 132 (283)
T 1w98_B 55 DWLMEVCEVYKLHRETFYLAQDFFDRYMATQENV--VKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEIL 132 (283)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCC--CGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHH
Confidence 478889999999999999999999999984 333 5678899999999999999887677777787776 48999999
Q ss_pred HHHHHHHHhcCCceee-CHHHHHHHH
Q 045984 78 KLELNFLFTLEFKLHV-TTEVFAKYC 102 (127)
Q Consensus 78 ~lE~~fL~~Ld~~L~V-~~~~~~~~~ 102 (127)
+||+.+|+.|+|++.+ ++..|-..+
T Consensus 133 ~mE~~IL~~L~~~l~~~tp~~fL~~f 158 (283)
T 1w98_B 133 TMELMIMKALKWRLSPLTIVSWLNVY 158 (283)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCCCCHHHHHHHH
Confidence 9999999999999985 465564443
No 9
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=98.98 E-value=2.3e-09 Score=81.26 Aligned_cols=97 Identities=22% Similarity=0.295 Sum_probs=82.2
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhcc--CCCHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIG--GISTAEMNK 78 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~--g~s~~eln~ 78 (127)
|++.++..+.+++++++.+|..|+||+.....+ .....+-+.++|+.+|+|+-+-...+-+.+..++ .++.+|+.+
T Consensus 62 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v--~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~ 139 (271)
T 2w96_A 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPV--KKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQ 139 (271)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCC--CTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCc--CHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHH
Confidence 478889999999999999999999999995443 4567899999999999999887666777777765 389999999
Q ss_pred HHHHHHHhcCCceee-CHHHHH
Q 045984 79 LELNFLFTLEFKLHV-TTEVFA 99 (127)
Q Consensus 79 lE~~fL~~Ld~~L~V-~~~~~~ 99 (127)
||+.+|+.|+|++.+ ++..|-
T Consensus 140 mE~~IL~~L~~~l~~~tp~~fl 161 (271)
T 2w96_A 140 MELLLVNKLKWNLAAMTPHDFI 161 (271)
T ss_dssp HHHHHHHHTTTCCCCCCHHHHH
T ss_pred HHHHHHHHCCCccCCCCHHHHH
Confidence 999999999999985 455554
No 10
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=98.73 E-value=5.5e-08 Score=72.14 Aligned_cols=95 Identities=13% Similarity=0.176 Sum_probs=77.9
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCccccc-ccHHHHHHHHHHHhhhhcCCCcccccchhhcc--------CC
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTR-LNVHRLLITSFLVAAKFVDDECYNNAYYAKIG--------GI 71 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~-~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~--------g~ 71 (127)
++|.++..+.+++++++-.|..|++|+.....+ .. .+.+-+..+|+.+|+|+-+ ....-+++..++ .+
T Consensus 33 ~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~--~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~~~~~~ 109 (235)
T 1zp2_A 33 KVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNE--EKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWSLKVKL 109 (235)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCS--CCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHccchhhc
Confidence 478899999999999999999999999985433 34 6788999999999999977 444555555543 57
Q ss_pred CHHHHHHHHHHHHHhcCCceeeC-HHHH
Q 045984 72 STAEMNKLELNFLFTLEFKLHVT-TEVF 98 (127)
Q Consensus 72 s~~eln~lE~~fL~~Ld~~L~V~-~~~~ 98 (127)
+.+++-+||+.+|+.|+|++.+. +..|
T Consensus 110 ~~~~I~~~E~~iL~~L~f~l~~~~P~~~ 137 (235)
T 1zp2_A 110 SRSNISEIEFEIISVLDAFLIVHHPYTS 137 (235)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCCCTHHH
T ss_pred cHHHHHHHHHHHHHHCCCcEEecChHHH
Confidence 89999999999999999999874 4444
No 11
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.72 E-value=3.3e-08 Score=74.02 Aligned_cols=95 Identities=20% Similarity=0.139 Sum_probs=75.4
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhc------------
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKI------------ 68 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v------------ 68 (127)
++|.++..+.+++++++-.|..|++|+.....+ .....+-+..+|+.+|+|+-+ ....-+++..+
T Consensus 46 ~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~--~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~~~~~~~~~~~~~ 122 (258)
T 2i53_A 46 RFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSF--KQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKTARSLLNDVQFGQ 122 (258)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHSCHHHHGG
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCh--hhcCHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHhchhhhhh
Confidence 478899999999999999999999999985443 456788899999999999977 34444444432
Q ss_pred -cCCCHHHHHHHHHHHHHhcCCceeeC-HHHH
Q 045984 69 -GGISTAEMNKLELNFLFTLEFKLHVT-TEVF 98 (127)
Q Consensus 69 -~g~s~~eln~lE~~fL~~Ld~~L~V~-~~~~ 98 (127)
+.-+.+++-+||+.+|+.|+|++.+. +..|
T Consensus 123 ~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~f 154 (258)
T 2i53_A 123 FGDDPKEEVMVLERILLQTIKFDLQVEHPYQF 154 (258)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHCCCceeccChHHH
Confidence 12257899999999999999999874 4444
No 12
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=98.68 E-value=1.1e-07 Score=71.31 Aligned_cols=95 Identities=23% Similarity=0.241 Sum_probs=76.4
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhcc-----------
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIG----------- 69 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~----------- 69 (127)
++|.++..+.+++++++-.|..|++|+.....+ .....+-+..+|+.+|+|+-+. ...-+++..++
T Consensus 36 ~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~--~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~~~~~~~~~ 112 (257)
T 2ivx_A 36 NLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSF--TKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLHPLEPLL 112 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHCTTSCCC
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCCh--hhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHHhccCCCCC
Confidence 478899999999999999999999999985443 4677899999999999999776 44445554332
Q ss_pred -----CCC--HHHHHHHHHHHHHhcCCceeeC-HHHH
Q 045984 70 -----GIS--TAEMNKLELNFLFTLEFKLHVT-TEVF 98 (127)
Q Consensus 70 -----g~s--~~eln~lE~~fL~~Ld~~L~V~-~~~~ 98 (127)
.++ .+++-+||+.+|+.|+|++.+. +..|
T Consensus 113 ~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~f 149 (257)
T 2ivx_A 113 DTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTD 149 (257)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHH
Confidence 122 8999999999999999999964 4444
No 13
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.61 E-value=1.9e-07 Score=71.28 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=79.0
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhc------------
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKI------------ 68 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v------------ 68 (127)
++|.++..+.+++++++-.|.+|++|+.....+ .....+-+..+|+.+|+|+-+-...+.++...+
T Consensus 48 ~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~--~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~ 125 (285)
T 3rgf_B 48 NVIQALGEHLKLRQQVIATATVYFKRFYARYSL--KSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYA 125 (285)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCT--TTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCc--hhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccccc
Confidence 478899999999999999999999999985443 467789999999999999966543333332221
Q ss_pred ----cCCCHHHHHHHHHHHHHhcCCceeeC-HH-HHHHHHHHH
Q 045984 69 ----GGISTAEMNKLELNFLFTLEFKLHVT-TE-VFAKYCSQL 105 (127)
Q Consensus 69 ----~g~s~~eln~lE~~fL~~Ld~~L~V~-~~-~~~~~~~~L 105 (127)
...+.+++-+||+.+|+.|+|++.|. +. -..+|...+
T Consensus 126 ~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l 168 (285)
T 3rgf_B 126 FPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM 168 (285)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHh
Confidence 12578999999999999999999874 33 334555554
No 14
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=98.51 E-value=8.5e-08 Score=75.65 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=73.5
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhcc-----------
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIG----------- 69 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~----------- 69 (127)
|+|.++..+.+++++++-.|..|++|+.....+ ...+.+-+..+||.+|+|+-+. ...-+++..+.
T Consensus 43 ~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv--~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~~~~~~~~~ 119 (358)
T 2pk2_A 43 NLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSF--TRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTCLHPQESLP 119 (358)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHHHCSSSCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhccccccc
Confidence 478899999999999999999999999985443 4678899999999999999776 44444444322
Q ss_pred -----CC--CHHHHHHHHHHHHHhcCCceeeC
Q 045984 70 -----GI--STAEMNKLELNFLFTLEFKLHVT 94 (127)
Q Consensus 70 -----g~--s~~eln~lE~~fL~~Ld~~L~V~ 94 (127)
.+ ..++|-+||+.+|+.|+|++.+.
T Consensus 120 ~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~ 151 (358)
T 2pk2_A 120 DTRSEAYLQQVQDLVILESIILQTLGFELTID 151 (358)
T ss_dssp CTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCC
T ss_pred cccchhhhHHHHHHHHHHHHHHHHcCCceeCC
Confidence 02 26889999999999999999864
No 15
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=98.46 E-value=1.3e-06 Score=67.82 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=78.0
Q ss_pred hHHHHHHHcC--CCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccC-------CC
Q 045984 2 YIERIFKYSR--CSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGG-------IS 72 (127)
Q Consensus 2 fl~~i~~~~~--~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g-------~s 72 (127)
+|.++....+ ++.+++-.|.+|++|+.....+ ...+.+-+..+|+.+|+|+-+- ..+-+.+..+.. .+
T Consensus 63 ~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~--~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p~~~~~~ 139 (323)
T 1jkw_A 63 RLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSV--MEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESPLGQEKA 139 (323)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCT--TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCCh--hhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccChhhhHHH
Confidence 5778888899 9999999999999999985443 4677899999999999999765 344455554332 23
Q ss_pred HHHHHHHHHHHHHhcCCceeeC-HHHH-HHHHHHH
Q 045984 73 TAEMNKLELNFLFTLEFKLHVT-TEVF-AKYCSQL 105 (127)
Q Consensus 73 ~~eln~lE~~fL~~Ld~~L~V~-~~~~-~~~~~~L 105 (127)
.++|-+||+.+|+.|+|++.|. +..| ..|...+
T Consensus 140 ~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l 174 (323)
T 1jkw_A 140 LEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDL 174 (323)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHH
Confidence 6899999999999999999874 3333 4455554
No 16
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=98.33 E-value=6.9e-06 Score=59.48 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=85.4
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLE 80 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~lE 80 (127)
++|.++-.+.+++..+.-.|..|++|+.....+ ...+..-+..+|+.+|.|.-+ .+.+-++++.+.+++.+++.++|
T Consensus 10 ~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~--~~~~~~~v~aaclylAcK~ee-~p~~l~di~~~~~~~~~~i~~~~ 86 (207)
T 1c9b_A 10 KEITTMADRINLPRNIVDRTNNLFKQVYEQKSL--KGRANDAIASACLYIACRQEG-VPRTFKEICAVSRISKKEIGRCF 86 (207)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCS--TTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--CCCCHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHHHHH
Confidence 368899999999999999999999999985433 456788999999999999855 46788899999999999999999
Q ss_pred HHHHHhcCCceeeC--HHHHHHHHHHH
Q 045984 81 LNFLFTLEFKLHVT--TEVFAKYCSQL 105 (127)
Q Consensus 81 ~~fL~~Ld~~L~V~--~~~~~~~~~~L 105 (127)
+.+++.|+|++.+. .....+|+..|
T Consensus 87 ~~ll~~L~~~l~~~~p~~~l~r~~~~l 113 (207)
T 1c9b_A 87 KLILKALETSVDLITTGDFMSRFCSNL 113 (207)
T ss_dssp HHHHHHTTCCCCCCCTHHHHHHHHHHT
T ss_pred HHHHHHHCCCcCcCCHHHHHHHHHHHC
Confidence 99999999998753 44445666544
No 17
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.20 E-value=6.4e-06 Score=59.28 Aligned_cols=103 Identities=10% Similarity=0.072 Sum_probs=85.5
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLE 80 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~lE 80 (127)
++|.++-...+++..+.-.|..|.+|+...... ...+..-+..+|+-+|.|..+ .+.+-++.+.+.|++..++.++|
T Consensus 14 ~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~--~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~v~~~~i~~~~ 90 (200)
T 1ais_B 14 SELDRITAQLKLPRHVEEEAARLYREAVRKGLI--RGRSIESVMAACVYAACRLLK-VPRTLDEIADIARVDKKEIGRSY 90 (200)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTT--TTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCc--CCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHCCCHHHHHHHH
Confidence 368889999999999999999999999885332 456678899999999999866 67888899999999999999999
Q ss_pred HHHHHhcCCceee---CHHHH-HHHHHHHH
Q 045984 81 LNFLFTLEFKLHV---TTEVF-AKYCSQLD 106 (127)
Q Consensus 81 ~~fL~~Ld~~L~V---~~~~~-~~~~~~L~ 106 (127)
+.+++.|++++.+ ++..| .+|+..|.
T Consensus 91 ~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~ 120 (200)
T 1ais_B 91 RFIARNLNLTPKKLFVKPTDYVNKFADELG 120 (200)
T ss_dssp HHHHHHTTCCTTTTCCCGGGGHHHHHHHHT
T ss_pred HHHHHHhcccCCcCCCCHHHHHHHHHHHcC
Confidence 9999999999875 34444 56666554
No 18
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.00072 Score=52.75 Aligned_cols=121 Identities=11% Similarity=0.054 Sum_probs=70.8
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHHHH
Q 045984 2 YIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLEL 81 (127)
Q Consensus 2 fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~lE~ 81 (127)
+|.++-...+++..+.=.|..+..|+.....+ ......-+..+|+.+|.|. +..+.+-+..+.+.+++.+||.++++
T Consensus 132 ~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~--kgr~~~~vaaAclyiAcR~-e~~prtl~ei~~~~~v~~keIgr~~~ 208 (345)
T 3k7a_M 132 KITMLCDAAELPKIVKDCAKEAYKLCHDEKTL--KGKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKEFGKTLN 208 (345)
T ss_dssp HHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSS--CCCCSHHHHTTTTTTTSBT-TBSSCCHHHHHHSSSCCSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--cCCcHHHHHHHHHHHHHHH-cCCCccHHHHHHHHCCCHHHHHHHHH
Confidence 57788889999999999999999998774332 3456677889999999994 55677888899999999999999999
Q ss_pred HHHHhcC------------Cceee-CHHHH-HHHHHHHHH--hh--------hhhcCCCCCCCCCCCC
Q 045984 82 NFLFTLE------------FKLHV-TTEVF-AKYCSQLDM--EG--------AAAEESWVPDTSKPTG 125 (127)
Q Consensus 82 ~fL~~Ld------------~~L~V-~~~~~-~~~~~~L~~--~~--------~~~~~~~~~~~~~~~~ 125 (127)
.+++.|+ +++.+ ++..| .+|+..|.- .+ ....+.|.....+|.|
T Consensus 209 ~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~ 276 (345)
T 3k7a_M 209 IMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPIT 276 (345)
T ss_dssp HHHHHHTCC-----------------------------------------------------------
T ss_pred HHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHH
Confidence 9999998 76653 34444 456666541 11 1234566666677765
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.53 E-value=0.11 Score=36.68 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=71.8
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLE 80 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~lE 80 (127)
+||.++.+..+++.++.-.|..++.+..... . ....++.-+..+|+-+|++.... ..+.+.++.+.|++..++..-=
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~-~-~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~vs~~ti~~~~ 186 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRG-L-TSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVARVTEVTVRNRY 186 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTT-C-CTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-c-ccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhCCCHHHHHHHH
Confidence 5899999999999999888888888877632 2 34577888999999999998664 4577888999999999999888
Q ss_pred HHHHHhcCCce
Q 045984 81 LNFLFTLEFKL 91 (127)
Q Consensus 81 ~~fL~~Ld~~L 91 (127)
+++.+.++-++
T Consensus 187 ~~l~~~l~~~~ 197 (200)
T 1ais_B 187 KELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHcCCCC
Confidence 88888877543
No 20
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=95.47 E-value=0.062 Score=41.87 Aligned_cols=121 Identities=12% Similarity=0.094 Sum_probs=69.1
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHHHH
Q 045984 2 YIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLEL 81 (127)
Q Consensus 2 fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~lE~ 81 (127)
.|.++....+++..+.=.|..+..|+....- +...+..-+..+|+.+|.|. .+.+.+-+..+.+.+++.+||.+..+
T Consensus 132 ~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~--~rGrs~e~vaAAclYiACR~-~~~prtl~eI~~~~~v~~keigr~~k 208 (345)
T 4bbr_M 132 KITMLCDAAELPKIVKDCAKEAYKLCHDEKT--LKGKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKEFGKTLN 208 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT--TTTCCHHHHHHHHHHHHHHH-TCCBCCHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--ccCCCHHHHHHHHHHHHHHh-cCCCccHHHHHHHhCCCHHHHHHHHH
Confidence 4678888999999998888888888877432 24556788888999999985 45677888899999999999999999
Q ss_pred HHHHhcCCc------------e-eeCHHHH-HHHHHHHHH----------hhhhhcCCCCCCCCCCCC
Q 045984 82 NFLFTLEFK------------L-HVTTEVF-AKYCSQLDM----------EGAAAEESWVPDTSKPTG 125 (127)
Q Consensus 82 ~fL~~Ld~~------------L-~V~~~~~-~~~~~~L~~----------~~~~~~~~~~~~~~~~~~ 125 (127)
.+.+.|+.. + .+++++| .+|+..|.- ......+.|.....+|.|
T Consensus 209 ~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~ 276 (345)
T 4bbr_M 209 IMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPIT 276 (345)
T ss_dssp HHHHCC--------------------------------------------------------------
T ss_pred HHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHH
Confidence 999999864 2 2345555 556655541 111235677777777776
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.70 E-value=0.14 Score=36.46 Aligned_cols=80 Identities=8% Similarity=0.049 Sum_probs=59.8
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLE 80 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~lE 80 (127)
+|+.++.+..+++.++.-.|...+.+.... +. .....++-+..+|+-+|++..+ ...+.+.|+.+.|++..++..-=
T Consensus 104 ~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~-~l-~~g~~P~~IAaAaiylA~~~~~-~~~~~~~i~~~~~v~~~tI~~~~ 180 (207)
T 1c9b_A 104 DFMSRFCSNLCLPKQVQMAATHIARKAVEL-DL-VPGRSPISVAAAAIYMASQASA-EKRTQKEIGDIAGVADVTIRQSY 180 (207)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHT-TC-STTCCHHHHHHHHHHHHHHTSS-SCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Cc-cCCCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHhCCCHHHHHHHH
Confidence 478999999999998888887777776652 22 3467788999999999999875 44566778888888777776544
Q ss_pred HHH
Q 045984 81 LNF 83 (127)
Q Consensus 81 ~~f 83 (127)
+++
T Consensus 181 ~~l 183 (207)
T 1c9b_A 181 RLI 183 (207)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 22
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=92.91 E-value=0.39 Score=36.06 Aligned_cols=83 Identities=6% Similarity=-0.053 Sum_probs=64.1
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLE 80 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~lE 80 (127)
+|+.++.+..+.+..+.-.|..++....... . .-...++-+-.+|+.+|.+...... +.|-...|++.+++...-
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~-~-~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~~~~~~~~l~~~~ 233 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTD-L-CLLYPPFMIALACLHVACVVQQKDA---RQWFAELSVDMEKILEII 233 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-H-HHHSCHHHHHHHHHHHHHHHTTCCC---HHHHHTSCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccC-h-hhccCHHHHHHHHHHHHHHHcCCCh---hhHHHHHCCCHHHHHHHH
Confidence 3788888888888888788877776654422 1 1245678899999999999887532 578888999999999999
Q ss_pred HHHHHhcC
Q 045984 81 LNFLFTLE 88 (127)
Q Consensus 81 ~~fL~~Ld 88 (127)
.+++++.+
T Consensus 234 ~~il~ly~ 241 (285)
T 3rgf_B 234 RVILKLYE 241 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 23
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=90.71 E-value=2.1 Score=31.10 Aligned_cols=87 Identities=8% Similarity=0.082 Sum_probs=61.1
Q ss_pred ChHHHHHHHcCCCH----HHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCC-c-c----cccchhhc--
Q 045984 1 QYIERIFKYSRCSP----SCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDE-C-Y----NNAYYAKI-- 68 (127)
Q Consensus 1 ~fl~~i~~~~~~s~----~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~-~-~----~n~~~a~v-- 68 (127)
+|+.++.+..+.+. .+.-.|..+++....... .-...+.-+-++|+.+|.+.++-. . + ....|-..
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~--~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~ 230 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTL--SLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFV 230 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTG--GGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCc--hhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhc
Confidence 37888888888887 456666666666554322 234667889999999999988642 2 2 23346554
Q ss_pred cCCCHHHHHHHHHHHHHhcCC
Q 045984 69 GGISTAEMNKLELNFLFTLEF 89 (127)
Q Consensus 69 ~g~s~~eln~lE~~fL~~Ld~ 89 (127)
.|++.+++...-.+++++.+-
T Consensus 231 ~~~~~~~l~~~~~~il~ly~~ 251 (258)
T 2i53_A 231 QDVPVDVLEDICHQILDLYSQ 251 (258)
T ss_dssp SSCCHHHHHHHHHHHHTTTSS
T ss_pred cCCCHHHHHHHHHHHHHHHhc
Confidence 599999999999999887653
No 24
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=89.35 E-value=3.9 Score=29.75 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=62.6
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCC-cc--cccchhhc--cCCCHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDE-CY--NNAYYAKI--GGISTAE 75 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~-~~--~n~~~a~v--~g~s~~e 75 (127)
+|+.++.+..+.+.+..-.|..++..-....... -...+.-+-.+|+.+|.+.++-. +. ....|... .|++.++
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~-l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~ 226 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFC-LQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLEL 226 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGG-GTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHH-HcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHH
Confidence 3888999999999888877877776554212221 23567889999999999998632 11 23567764 3799999
Q ss_pred HHHHHHHHHHhc
Q 045984 76 MNKLELNFLFTL 87 (127)
Q Consensus 76 ln~lE~~fL~~L 87 (127)
+...-.++++..
T Consensus 227 l~~~~~~i~~~~ 238 (257)
T 2ivx_A 227 LDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999865
No 25
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=86.89 E-value=3.5 Score=30.03 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=53.1
Q ss_pred ChHHHHHHHcCCCHHHH----HHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCccc----ccchhhccCCC
Q 045984 1 QYIERIFKYSRCSPSCS----VVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYN----NAYYAKIGGIS 72 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~----i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~----n~~~a~v~g~s 72 (127)
+|+.++.+..+.+.+.. -.|..+++--.... ..-...+.-+-.+|+.+|.+...+..++ .+..+.++|++
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~--~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~ 231 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQP--NIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFS 231 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSG--GGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCc--chhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcC
Confidence 58899999998887642 12444444222222 2234567788899999999986443332 44445577888
Q ss_pred HHHHHHHHHHHHHh
Q 045984 73 TAEMNKLELNFLFT 86 (127)
Q Consensus 73 ~~eln~lE~~fL~~ 86 (127)
.+++...=..+.++
T Consensus 232 ~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 232 TNTVRTVKDQVSEA 245 (254)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88887766665554
No 26
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=86.76 E-value=2.2 Score=33.18 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=64.2
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCC-c--ccccchhhcc--CCCHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDE-C--YNNAYYAKIG--GISTAE 75 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~-~--~~n~~~a~v~--g~s~~e 75 (127)
+||.++++....+.++.-.|..++.......... -...+.-+-++|+.+|.+.++-. . -....|.... +++.++
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~-l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~ 233 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFS-LQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLEL 233 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGG-GTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHH
Confidence 4888999999999888888877776654322221 23567788889999999998732 2 1235677764 789999
Q ss_pred HHHHHHHHHHhcCC
Q 045984 76 MNKLELNFLFTLEF 89 (127)
Q Consensus 76 ln~lE~~fL~~Ld~ 89 (127)
+...-.++++.++=
T Consensus 234 l~~i~~~il~~y~~ 247 (358)
T 2pk2_A 234 LDELTHEFLQILEK 247 (358)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988643
No 27
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=85.60 E-value=1.3 Score=31.99 Aligned_cols=82 Identities=7% Similarity=-0.023 Sum_probs=57.0
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcc-cccchhhccCCCHHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECY-NNAYYAKIGGISTAEMNKL 79 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~-~n~~~a~v~g~s~~eln~l 79 (127)
+|+.++.+..+++.++.-.|..++........ .-...+.-+-.+|+.+|.+..+...- ....| .|++.+++...
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~--~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~---~~~~~~~i~~~ 210 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSL--CLMAHPHQLAYAALLISCCNDENTIPKLLDLI---KSTDAFKVILC 210 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTG--GGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHC---CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc--hhccCHHHHHHHHHHHHHHhcCCCCCCCcchh---hcCCHHHHHHH
Confidence 47889999889999988888888877655322 23456788999999999998754211 11222 27777777777
Q ss_pred HHHHHHhc
Q 045984 80 ELNFLFTL 87 (127)
Q Consensus 80 E~~fL~~L 87 (127)
=.+++++.
T Consensus 211 ~~~i~~ly 218 (235)
T 1zp2_A 211 VQRIISIY 218 (235)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777653
No 28
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=84.78 E-value=2.6 Score=31.93 Aligned_cols=87 Identities=10% Similarity=0.009 Sum_probs=54.6
Q ss_pred ChHHHHHHHcCCCHHHH----HHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccch----hhccCCC
Q 045984 1 QYIERIFKYSRCSPSCS----VVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYY----AKIGGIS 72 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~----i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~----a~v~g~s 72 (127)
+|+.++++..+.+.... -.|..+++--..... +-...+.-+-.+|+.+|.+.+.........| +++.|++
T Consensus 173 ~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~--~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~ 250 (306)
T 3g33_B 173 DFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYT--FAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTE 250 (306)
T ss_dssp GGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGG--GTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhh--hccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCC
Confidence 48888988887765422 233344442222222 2345567888899999999998765544444 4567999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 045984 73 TAEMNKLELNFLFTLEF 89 (127)
Q Consensus 73 ~~eln~lE~~fL~~Ld~ 89 (127)
.+++...-..+++++.=
T Consensus 251 ~~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 251 VDCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988877777665543
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=79.32 E-value=2.1 Score=31.60 Aligned_cols=82 Identities=9% Similarity=0.071 Sum_probs=55.7
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLE 80 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~lE 80 (127)
+|+.++.+..+.+..+.-+|..+++.-.....+ -...+.-+-.+|+.+|.+.++... +++..+.++|++.+++...=
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~--~~~~Ps~iAaAai~lA~~~l~~~~-w~~~l~~~tg~~~~~l~~~~ 216 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDM--VHFPPSQIAAGAFSLALKILDNGE-WTPTLQHYLSYTEESLLPVM 216 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGG--SSSCTTHHHHHHHHHHHHHHTCCC-SCTTHHHHSCCCSSTTTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhh--hcCCHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHCCCHHHHHHHH
Confidence 488888888888888877777777665543322 345566788999999999887653 33444567788866665544
Q ss_pred HHHHH
Q 045984 81 LNFLF 85 (127)
Q Consensus 81 ~~fL~ 85 (127)
..+++
T Consensus 217 ~~l~~ 221 (269)
T 2b9r_A 217 QHLAK 221 (269)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=77.27 E-value=5.1 Score=29.26 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=55.6
Q ss_pred ChHHHHHHHcCCCH-HHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHH
Q 045984 1 QYIERIFKYSRCSP-SCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKL 79 (127)
Q Consensus 1 ~fl~~i~~~~~~s~-~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~l 79 (127)
+|+.++.+..+.+. .+.-+|..+++.-....+. .....+.-+-.+|+.+|.+.++... +++..+.++|++.+++...
T Consensus 141 ~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~-~~~~~Ps~iAaAai~lA~~~~~~~~-w~~~l~~~~g~~~~~i~~~ 218 (260)
T 2cch_B 141 QFLTQYFLHQQPANCKVESLAMFLGELSLIDADP-YLKYLPSVIAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPC 218 (260)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHH-HTTSCHHHHHHHHHHHHHHHHHSCC-SCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHH-HhCCCHHHHHHHHHHHHHHHhCCCc-chHHHHHHhCcCHHHHHHH
Confidence 48888888888765 5556666555543322220 2345567788899999999887532 2333455679998888876
Q ss_pred HHHHHHhc
Q 045984 80 ELNFLFTL 87 (127)
Q Consensus 80 E~~fL~~L 87 (127)
=..+...+
T Consensus 219 ~~~l~~~~ 226 (260)
T 2cch_B 219 LMDLHQTY 226 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666643
No 31
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=73.38 E-value=10 Score=27.74 Aligned_cols=86 Identities=8% Similarity=-0.025 Sum_probs=50.5
Q ss_pred ChHHHHHHHcCCCHHHHH----HHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCC----Ccccccc----hhhc
Q 045984 1 QYIERIFKYSRCSPSCSV----VAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDD----ECYNNAY----YAKI 68 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i----~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D----~~~~n~~----~a~v 68 (127)
+|+.++++..+.+.+..- .|..+++..... ..+-...+.-+-.+|+.+|.+.++- ...+... .+++
T Consensus 159 ~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d--~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~ 236 (271)
T 2w96_A 159 DFIEHFLSKMPEAEENKQIIRKHAQTFVALCATD--VKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRV 236 (271)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTS--THHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhh--hhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHH
Confidence 488899999988876531 233444422222 2223456677888888889887742 2222222 2335
Q ss_pred cCCCHHHHHHHHHHHHHhcC
Q 045984 69 GGISTAEMNKLELNFLFTLE 88 (127)
Q Consensus 69 ~g~s~~eln~lE~~fL~~Ld 88 (127)
+|++..++...=..++.+++
T Consensus 237 ~~v~~~~l~~c~~~i~~l~~ 256 (271)
T 2w96_A 237 IKCDPDCLRACQEQIEALLE 256 (271)
T ss_dssp HTSCHHHHHHHHHHHHHHHT
T ss_pred HCcCHHHHHHHHHHHHHHHH
Confidence 67777777766666655544
No 32
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=72.47 E-value=9.9 Score=27.63 Aligned_cols=84 Identities=6% Similarity=-0.115 Sum_probs=48.7
Q ss_pred ChHHHHHHHcCCCHHHH----HHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCC-Ccccccchh----hccCC
Q 045984 1 QYIERIFKYSRCSPSCS----VVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDD-ECYNNAYYA----KIGGI 71 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~----i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D-~~~~n~~~a----~v~g~ 71 (127)
+|+.++.+..+.+.+.. -.|..+++--..... .-...+.-+-.+|+.+|.+.++- .......|. .++|+
T Consensus 153 ~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~--~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~ 230 (257)
T 1g3n_C 153 DVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPL--TGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGC 230 (257)
T ss_dssp HHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTT--GGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcc--hhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCc
Confidence 47888888888776542 224444443322222 23456778888999999998862 211113443 35678
Q ss_pred CHHHHHHHHHHHHHh
Q 045984 72 STAEMNKLELNFLFT 86 (127)
Q Consensus 72 s~~eln~lE~~fL~~ 86 (127)
+.+++...=..+.++
T Consensus 231 ~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 231 DVSVLQAAVEQILTS 245 (257)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 877777665555544
No 33
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=70.59 E-value=0.88 Score=35.14 Aligned_cols=83 Identities=7% Similarity=-0.041 Sum_probs=0.0
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLE 80 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~lE 80 (127)
+||.|+.+..+++.++.-.|.-++.+.... + ......+.-+..+|+.+|++.... ..+.+.|+.+.|++...|..-=
T Consensus 237 ~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~-~-l~~Gr~P~~IAaAaIylAa~~~~~-~~t~~eIa~~~~Vse~TIr~~y 313 (345)
T 3k7a_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEI-K-EIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQTLQVTEGTIKSGY 313 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-c-hhcCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHH
Confidence 466777777777777666666666666552 1 123466778889999999998764 3467889999998877776544
Q ss_pred HHHHHh
Q 045984 81 LNFLFT 86 (127)
Q Consensus 81 ~~fL~~ 86 (127)
.+++..
T Consensus 314 kel~~~ 319 (345)
T 3k7a_M 314 KILYEH 319 (345)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 444443
No 34
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=60.10 E-value=1.8 Score=33.44 Aligned_cols=84 Identities=7% Similarity=-0.049 Sum_probs=0.0
Q ss_pred ChHHHHHHHcCCCHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHHH
Q 045984 1 QYIERIFKYSRCSPSCSVVAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLE 80 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~lE 80 (127)
+||.|+.+..+++.++.-.|.-.+++.... + .....++.-+..+|+.+|+..... ..+.+..+++.|++...|..-=
T Consensus 237 ~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~-~-i~~GR~P~~IAAAaIylAa~l~g~-~~t~~eIa~v~~Vse~TIr~ry 313 (345)
T 4bbr_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEI-K-EIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQTLQVTEGTIKSGY 313 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-c-cccCCChHHHHHHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHH
Confidence 466777777777777666666666665552 1 124456677888889999987654 4577788888888766666544
Q ss_pred HHHHHhc
Q 045984 81 LNFLFTL 87 (127)
Q Consensus 81 ~~fL~~L 87 (127)
.+|+..+
T Consensus 314 kel~~~~ 320 (345)
T 4bbr_M 314 KILYEHR 320 (345)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444433
No 35
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=40.23 E-value=27 Score=18.13 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=15.6
Q ss_pred eCHHHHHHHHHHHHHhhhh
Q 045984 93 VTTEVFAKYCSQLDMEGAA 111 (127)
Q Consensus 93 V~~~~~~~~~~~L~~~~~~ 111 (127)
-+.|++.+|+..|++....
T Consensus 12 A~~Eela~Y~~~LrhYiNl 30 (36)
T 2bf9_A 12 APVEDLIRFYNDLQQYLNV 30 (36)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3689999999999987653
No 36
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=39.71 E-value=47 Score=20.40 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=32.6
Q ss_pred ccccchhhccCCCHHHHHHHHH-------HHHHhcCCceeeCHHHHHHHHHHHHHh
Q 045984 60 YNNAYYAKIGGISTAEMNKLEL-------NFLFTLEFKLHVTTEVFAKYCSQLDME 108 (127)
Q Consensus 60 ~~n~~~a~v~g~s~~eln~lE~-------~fL~~Ld~~L~V~~~~~~~~~~~L~~~ 108 (127)
.+++..|+..|++...+.+|.. .+|..|+|+ |-++++..+.+..-+.
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~~~~~~~~lLa~Lglk--vv~~e~~~~~k~~~~~ 78 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVLEWG--VVDDDMARLARQVAAI 78 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHHTHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHhCCCHHHHhhhhhhHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHH
Confidence 3566778888999999988643 456777666 4556777776655443
No 37
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.72 E-value=45 Score=21.11 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCC
Q 045984 94 TTEVFAKYCSQLDMEGAAAEESWVPDTSKPTG 125 (127)
Q Consensus 94 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 125 (127)
+++|...|...|++..... ..+..+-|+|
T Consensus 98 s~~e~~~Wi~al~~a~~~~---~~~~~~~p~~ 126 (130)
T 2d9v_A 98 TRDDAIAWKTALMEANSTP---APAGATVPSG 126 (130)
T ss_dssp SHHHHHHHHHHHHHHHTCC---CCTTSCCCCC
T ss_pred CHHHHHHHHHHHHHHHcCC---CCCCCCCCCC
Confidence 5889999999999876543 3444444444
No 38
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=36.24 E-value=50 Score=17.61 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.7
Q ss_pred eCHHHHHHHHHHHHHhhhhh
Q 045984 93 VTTEVFAKYCSQLDMEGAAA 112 (127)
Q Consensus 93 V~~~~~~~~~~~L~~~~~~~ 112 (127)
-++|++.+|+..|++....-
T Consensus 16 aspEela~Y~~~Lr~Yinlv 35 (41)
T 2l60_A 16 LSPEELNRYYASLRHYLNLV 35 (41)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 47899999999999887654
No 39
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=33.84 E-value=25 Score=22.20 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=31.4
Q ss_pred cccchhhccCCCHHHHHHHHHH-------HHHhcCCceeeCHHHHHHHHHHHHHhh
Q 045984 61 NNAYYAKIGGISTAEMNKLELN-------FLFTLEFKLHVTTEVFAKYCSQLDMEG 109 (127)
Q Consensus 61 ~n~~~a~v~g~s~~eln~lE~~-------fL~~Ld~~L~V~~~~~~~~~~~L~~~~ 109 (127)
+++..|+..|++...+.+++.. +|.++ .+.|+++++..+...+-+.+
T Consensus 25 gq~~vA~~iGV~~StISR~k~~~~~~~~~lLa~l--~l~v~~~e~~~~~k~~~~~l 78 (97)
T 1xwr_A 25 GTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVL--EWGVVDDDMARLARQVAAIL 78 (97)
T ss_dssp CHHHHHHHHTCCTTTHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHH--hcCCChHHHHHHHHHHHHHH
Confidence 5566777778777666665443 35566 45677888887777776555
No 40
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=33.83 E-value=1.3e+02 Score=21.73 Aligned_cols=82 Identities=7% Similarity=-0.110 Sum_probs=41.5
Q ss_pred ChHHHHHHHcCCCHHHHH----HHHHHHHHHhccCCcccccccHHHHHHHHHHHhhhhcCCCccc----ccchhhccCCC
Q 045984 1 QYIERIFKYSRCSPSCSV----VAYIYLDRFLQRISGCLTRLNVHRLLITSFLVAAKFVDDECYN----NAYYAKIGGIS 72 (127)
Q Consensus 1 ~fl~~i~~~~~~s~~~~i----~aliYi~Rl~~~~~~~~~~~~~~rl~l~alilA~K~~~D~~~~----n~~~a~v~g~s 72 (127)
+|+.++++..+.+.+..- .|-.+++--..... +-...+..+-.+|++.+. .....+ ...++++.|++
T Consensus 151 ~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~--~l~~~PS~iAaaa~~~~l---~~~~~~~~~~~~~L~~~t~~~ 225 (252)
T 1f5q_B 151 DLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGR--SAMKRPVLITLACMHLTM---NQKYDYYENRIDGVCKSLYIT 225 (252)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHH--HHTSCHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchh--hhccCHHHHHHHHHHHHh---ccCCCchhhHHHHHHHHHCcC
Confidence 478888888887765421 22222222222111 122334455555544443 333322 22345567888
Q ss_pred HHHHHHHHHHHHHhc
Q 045984 73 TAEMNKLELNFLFTL 87 (127)
Q Consensus 73 ~~eln~lE~~fL~~L 87 (127)
.+++...-..+.+.+
T Consensus 226 ~~~l~~C~~~i~~~l 240 (252)
T 1f5q_B 226 KEELHQCCDLVDIAI 240 (252)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777666666544
No 41
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=30.78 E-value=1.6e+02 Score=21.51 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=27.8
Q ss_pred cccHHHHHHHHHHHhhhhcCCCcccccchhhccCCCHHHHHHHHHHHHH
Q 045984 37 RLNVHRLLITSFLVAAKFVDDECYNNAYYAKIGGISTAEMNKLELNFLF 85 (127)
Q Consensus 37 ~~~~~rl~l~alilA~K~~~D~~~~n~~~a~v~g~s~~eln~lE~~fL~ 85 (127)
...+.-+-.+|+.+|.. .+.|..++|++.+++...-..+..
T Consensus 198 ~~~PS~iAaAai~la~~--------~~~l~~~tg~~~~~i~~c~~~l~~ 238 (283)
T 1w98_B 198 EFPYGILAASALYHFSS--------SELMQKVSGYQWCDIENCVKWMVP 238 (283)
T ss_dssp GSCHHHHHHHHHHHTSC--------HHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHC--------hHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34555677777777752 567888899998888765555543
No 42
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=28.52 E-value=30 Score=17.95 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.4
Q ss_pred eCHHHHHHHHHHHHHhhhh
Q 045984 93 VTTEVFAKYCSQLDMEGAA 111 (127)
Q Consensus 93 V~~~~~~~~~~~L~~~~~~ 111 (127)
-+.|++.+|+..|++....
T Consensus 12 A~pEela~Y~~~Lr~YiNl 30 (36)
T 1bba_A 12 ATPEQMAQYAAELRRYINM 30 (36)
T ss_dssp SSTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3678999999999987653
No 43
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.60 E-value=57 Score=17.34 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=12.7
Q ss_pred cCCCHHHHHHHHHHH
Q 045984 69 GGISTAEMNKLELNF 83 (127)
Q Consensus 69 ~g~s~~eln~lE~~f 83 (127)
-|++.+|+..+|.++
T Consensus 15 egfspeelaalesel 29 (48)
T 1g6u_A 15 EGFSPEELAALESEL 29 (48)
T ss_dssp TTCSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 489999999999775
No 44
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=23.38 E-value=70 Score=15.48 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhcCCc
Q 045984 73 TAEMNKLELNFLFTLEFK 90 (127)
Q Consensus 73 ~~eln~lE~~fL~~Ld~~ 90 (127)
-+||.++|..+=+.|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 578999999888888775
No 45
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=23.03 E-value=34 Score=17.89 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=15.2
Q ss_pred eCHHHHHHHHHHHHHhhhh
Q 045984 93 VTTEVFAKYCSQLDMEGAA 111 (127)
Q Consensus 93 V~~~~~~~~~~~L~~~~~~ 111 (127)
.+.|++.+|+..|++....
T Consensus 12 a~pEela~Y~~~Lr~Yinl 30 (37)
T 1f8p_A 12 APAEDLARYYSALRHYINL 30 (37)
T ss_dssp CTTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4678899999999987653
No 46
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=22.82 E-value=40 Score=17.88 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=19.8
Q ss_pred ceeeCHHHHHHHHHHHHHhhhhhcC
Q 045984 90 KLHVTTEVFAKYCSQLDMEGAAAEE 114 (127)
Q Consensus 90 ~L~V~~~~~~~~~~~L~~~~~~~~~ 114 (127)
.++=+.+++.+|+..|.++.+..++
T Consensus 12 ~~F~s~~~l~~YL~~LneYyai~GR 36 (40)
T 1k8v_A 12 LVLDNKAALRDYLRQINEYFAIIGR 36 (40)
T ss_dssp CSCSSCSHHHHHHHHHHHHHHHHHC
T ss_pred hhcCCHHHHHHHHHHHHHHHHHhcC
Confidence 3455788999999999998887654
No 47
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=22.32 E-value=1.6e+02 Score=19.05 Aligned_cols=36 Identities=8% Similarity=-0.094 Sum_probs=18.8
Q ss_pred eeCHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCC
Q 045984 92 HVTTEVFAKYCSQLDMEGAAAEESWVPDTSKPTGNL 127 (127)
Q Consensus 92 ~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 127 (127)
.+++++...+...|++.....+.+=.+...+|.||+
T Consensus 130 ~l~~ee~~~l~~~L~~l~~~l~~~~~~~~~~~~~~~ 165 (168)
T 2nyx_A 130 QMAPAERHGLVRALTAFTEAGGEPDARYEIERSHHH 165 (168)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCC-------------
T ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCcceehhhcccc
Confidence 368999999999888887777666666667777764
No 48
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.96 E-value=1.1e+02 Score=18.82 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHhhhhhcCC
Q 045984 94 TTEVFAKYCSQLDMEGAAAEES 115 (127)
Q Consensus 94 ~~~~~~~~~~~L~~~~~~~~~~ 115 (127)
++++..+|...|+.......++
T Consensus 88 s~~e~~~Wi~al~~~~~~~~~~ 109 (119)
T 2dhk_A 88 TKQAMLYWLQQLQMKRWEFHNS 109 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHhcCC
Confidence 6899999999999887766555
No 49
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=21.93 E-value=25 Score=18.26 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=14.0
Q ss_pred ccccchhhccCCCHHHHHHH
Q 045984 60 YNNAYYAKIGGISTAEMNKL 79 (127)
Q Consensus 60 ~~n~~~a~v~g~s~~eln~l 79 (127)
.+..+|..+.|++.+|...|
T Consensus 3 Lsd~dF~~vFgmsr~eF~~L 22 (37)
T 1und_A 3 LSEQDFVSVFGITRGQFAAL 22 (37)
T ss_dssp CCHHHHHHHHSSCHHHHHHS
T ss_pred CCHHHHHHHHCcCHHHHHHC
Confidence 45567777888887776654
No 50
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.91 E-value=58 Score=20.80 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHh
Q 045984 70 GISTAEMNKLELNFLFT 86 (127)
Q Consensus 70 g~s~~eln~lE~~fL~~ 86 (127)
+.+.+.++.+|+++|..
T Consensus 79 ~pT~enL~~FEhEvl~k 95 (101)
T 2keb_A 79 GLTSEILNSFEHEFLSK 95 (101)
T ss_dssp BCCHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 47999999999999974
Done!