Query 045986
Match_columns 148
No_of_seqs 184 out of 1709
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 12:59:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.9 1.3E-23 4.4E-28 128.7 7.5 78 68-147 13-90 (91)
2 1x4j_A Ring finger protein 38; 99.9 5E-23 1.7E-27 121.7 3.5 69 76-147 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.8 4.7E-21 1.6E-25 106.6 3.7 50 96-145 5-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.8 1.8E-20 6.3E-25 108.9 5.9 52 94-146 12-63 (69)
5 2ep4_A Ring finger protein 24; 99.8 3.3E-20 1.1E-24 109.2 5.7 51 95-146 14-64 (74)
6 2ect_A Ring finger protein 126 99.8 5.1E-20 1.7E-24 109.4 5.1 52 95-147 14-65 (78)
7 2ecl_A Ring-box protein 2; RNF 99.8 5.6E-20 1.9E-24 110.0 2.8 50 97-146 16-76 (81)
8 2ecm_A Ring finger and CHY zin 99.8 3.3E-19 1.1E-23 99.0 4.2 49 96-145 5-54 (55)
9 3ng2_A RNF4, snurf, ring finge 99.7 7.3E-19 2.5E-23 102.5 3.6 52 95-147 9-64 (71)
10 3dpl_R Ring-box protein 1; ubi 99.7 1.3E-18 4.3E-23 108.9 4.5 48 96-144 37-99 (106)
11 2xeu_A Ring finger protein 4; 99.7 1.3E-18 4.4E-23 99.4 3.2 51 96-147 3-57 (64)
12 2d8s_A Cellular modulator of i 99.7 2E-18 7E-23 102.6 4.1 52 94-147 13-71 (80)
13 2ea6_A Ring finger protein 4; 99.7 3.2E-18 1.1E-22 99.2 4.8 51 95-146 14-68 (69)
14 1v87_A Deltex protein 2; ring- 99.7 4.1E-18 1.4E-22 108.2 5.3 49 96-145 25-93 (114)
15 2ecn_A Ring finger protein 141 99.7 6E-18 2E-22 98.4 2.6 47 96-147 15-61 (70)
16 2djb_A Polycomb group ring fin 99.7 3.8E-17 1.3E-21 95.5 5.2 50 95-147 14-63 (72)
17 2d8t_A Dactylidin, ring finger 99.7 2.2E-17 7.6E-22 96.3 3.8 48 95-146 14-61 (71)
18 2ct2_A Tripartite motif protei 99.7 5.4E-17 1.9E-21 98.3 5.6 52 95-147 14-69 (88)
19 4a0k_B E3 ubiquitin-protein li 99.7 3.7E-18 1.3E-22 108.2 0.2 49 96-145 48-111 (117)
20 1chc_A Equine herpes virus-1 r 99.7 2.6E-17 9E-22 95.1 3.7 47 96-145 5-51 (68)
21 2ecy_A TNF receptor-associated 99.6 1.7E-16 5.8E-21 91.2 5.2 49 96-148 15-64 (66)
22 2ysl_A Tripartite motif-contai 99.6 3E-16 1E-20 91.8 5.9 50 95-148 19-71 (73)
23 2yur_A Retinoblastoma-binding 99.6 2.9E-16 9.9E-21 92.2 4.8 49 95-146 14-64 (74)
24 2csy_A Zinc finger protein 183 99.6 2.7E-16 9.1E-21 93.9 4.7 47 95-145 14-60 (81)
25 4ayc_A E3 ubiquitin-protein li 99.6 2.8E-16 9.5E-21 102.9 3.6 46 97-146 54-99 (138)
26 4ap4_A E3 ubiquitin ligase RNF 99.6 3.8E-16 1.3E-20 101.2 3.9 51 96-147 7-61 (133)
27 2ct0_A Non-SMC element 1 homol 99.6 1.1E-15 3.8E-20 89.1 5.2 48 96-146 15-64 (74)
28 2ecw_A Tripartite motif-contai 99.6 1.8E-15 6.1E-20 90.8 5.5 49 95-147 18-72 (85)
29 1t1h_A Gspef-atpub14, armadill 99.6 1.7E-15 5.8E-20 89.7 5.1 48 96-147 8-56 (78)
30 2egp_A Tripartite motif-contai 99.6 4.1E-16 1.4E-20 92.6 2.3 49 95-147 11-66 (79)
31 3lrq_A E3 ubiquitin-protein li 99.6 6.2E-16 2.1E-20 95.9 2.9 49 96-147 22-71 (100)
32 1g25_A CDK-activating kinase a 99.6 2.1E-15 7E-20 86.3 4.6 51 96-147 3-56 (65)
33 2ecv_A Tripartite motif-contai 99.6 2E-15 7E-20 90.6 4.7 48 96-147 19-72 (85)
34 4ap4_A E3 ubiquitin ligase RNF 99.6 9.7E-16 3.3E-20 99.3 3.0 52 95-147 71-126 (133)
35 2y43_A E3 ubiquitin-protein li 99.6 1.8E-15 6E-20 93.6 3.5 48 96-146 22-69 (99)
36 2ysj_A Tripartite motif-contai 99.6 8.2E-15 2.8E-19 83.2 5.8 42 95-140 19-63 (63)
37 2ecj_A Tripartite motif-contai 99.5 6.6E-15 2.2E-19 82.2 4.3 42 95-140 14-58 (58)
38 2ckl_A Polycomb group ring fin 99.5 5.2E-15 1.8E-19 92.9 4.2 48 96-146 15-62 (108)
39 2ckl_B Ubiquitin ligase protei 99.5 1.7E-14 5.9E-19 97.0 5.9 72 71-145 24-101 (165)
40 3ztg_A E3 ubiquitin-protein li 99.5 2.3E-14 7.8E-19 87.4 5.5 47 95-144 12-60 (92)
41 3fl2_A E3 ubiquitin-protein li 99.5 1.1E-14 3.9E-19 93.5 4.0 47 96-146 52-99 (124)
42 1jm7_A BRCA1, breast cancer ty 99.5 1.3E-14 4.5E-19 91.5 3.9 47 97-147 22-71 (112)
43 1rmd_A RAG1; V(D)J recombinati 99.5 6.6E-15 2.3E-19 93.6 1.2 47 96-146 23-70 (116)
44 3hct_A TNF receptor-associated 99.5 2E-14 6.8E-19 91.6 3.4 48 95-146 17-65 (118)
45 1z6u_A NP95-like ring finger p 99.5 4.4E-14 1.5E-18 93.6 4.1 48 96-147 78-126 (150)
46 1e4u_A Transcriptional repress 99.4 1.1E-13 3.8E-18 81.8 4.9 51 95-146 10-62 (78)
47 2kre_A Ubiquitin conjugation f 99.4 1.2E-13 4.2E-18 85.4 5.0 50 94-147 27-76 (100)
48 3l11_A E3 ubiquitin-protein li 99.4 1.5E-14 5.2E-19 91.7 0.8 46 96-145 15-61 (115)
49 2vje_A E3 ubiquitin-protein li 99.4 5.5E-14 1.9E-18 80.1 3.1 46 96-145 8-56 (64)
50 1bor_A Transcription factor PM 99.4 4.4E-14 1.5E-18 78.4 1.8 45 96-147 6-50 (56)
51 2vje_B MDM4 protein; proto-onc 99.4 1.2E-13 4E-18 78.5 2.9 48 96-145 7-55 (63)
52 2kr4_A Ubiquitin conjugation f 99.4 2.2E-13 7.7E-18 81.8 4.1 48 95-146 13-60 (85)
53 2y1n_A E3 ubiquitin-protein li 99.4 2.3E-13 8E-18 101.8 4.3 46 97-146 333-379 (389)
54 1wgm_A Ubiquitin conjugation f 99.4 7.9E-13 2.7E-17 81.4 5.2 49 95-147 21-70 (98)
55 3knv_A TNF receptor-associated 99.3 2.3E-13 7.7E-18 89.3 1.9 47 95-145 30-77 (141)
56 1jm7_B BARD1, BRCA1-associated 99.3 3E-13 1E-17 86.0 1.5 44 97-146 23-67 (117)
57 1vyx_A ORF K3, K3RING; zinc-bi 99.3 1.3E-12 4.6E-17 73.2 3.8 47 95-145 5-58 (60)
58 3k1l_B Fancl; UBC, ring, RWD, 99.3 4.4E-13 1.5E-17 98.1 2.3 52 94-145 306-372 (381)
59 4ic3_A E3 ubiquitin-protein li 99.3 5.6E-13 1.9E-17 78.0 1.2 41 97-145 25-66 (74)
60 3hcs_A TNF receptor-associated 99.2 2.9E-12 9.9E-17 86.5 2.9 49 95-147 17-66 (170)
61 1wim_A KIAA0161 protein; ring 99.2 5.3E-12 1.8E-16 77.2 2.8 50 96-146 5-66 (94)
62 2ea5_A Cell growth regulator w 99.2 2.1E-11 7E-16 70.1 3.9 43 95-145 14-57 (68)
63 2yu4_A E3 SUMO-protein ligase 99.2 1.3E-11 4.4E-16 75.5 2.6 45 96-143 7-59 (94)
64 2c2l_A CHIP, carboxy terminus 99.1 2.1E-11 7.3E-16 87.9 3.8 49 94-146 206-255 (281)
65 2ecg_A Baculoviral IAP repeat- 99.1 1.9E-11 6.4E-16 71.6 2.6 42 97-146 26-68 (75)
66 2yho_A E3 ubiquitin-protein li 99.1 2.1E-11 7.3E-16 72.1 0.7 41 97-145 19-60 (79)
67 2f42_A STIP1 homology and U-bo 99.0 9.5E-11 3.2E-15 79.3 3.2 49 94-146 104-153 (179)
68 2bay_A PRE-mRNA splicing facto 98.9 2.4E-10 8.2E-15 64.1 1.7 47 97-147 4-51 (61)
69 3t6p_A Baculoviral IAP repeat- 98.9 2.4E-10 8.1E-15 84.9 0.9 42 96-145 295-337 (345)
70 3htk_C E3 SUMO-protein ligase 98.9 1.3E-09 4.3E-14 77.4 3.5 48 96-146 181-232 (267)
71 3vk6_A E3 ubiquitin-protein li 98.7 1.6E-08 5.4E-13 61.2 3.9 45 98-145 3-48 (101)
72 3nw0_A Non-structural maintena 98.4 3E-07 1E-11 64.9 4.6 47 96-145 180-228 (238)
73 2lri_C Autoimmune regulator; Z 97.4 0.00013 4.3E-09 41.1 3.5 46 96-145 12-61 (66)
74 2ko5_A Ring finger protein Z; 96.7 0.00053 1.8E-08 40.8 1.3 44 97-146 29-73 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 96.7 0.00095 3.2E-08 40.5 2.5 33 97-130 4-36 (101)
76 1wil_A KIAA1045 protein; ring 96.1 0.0067 2.3E-07 35.3 3.7 35 94-130 13-47 (89)
77 2l5u_A Chromodomain-helicase-D 95.9 0.0046 1.6E-07 34.0 2.1 44 95-142 10-57 (61)
78 1mm2_A MI2-beta; PHD, zinc fin 95.4 0.004 1.4E-07 34.3 0.7 47 94-144 7-57 (61)
79 3o36_A Transcription intermedi 95.2 0.0051 1.8E-07 41.5 1.0 46 95-144 3-52 (184)
80 1f62_A Transcription factor WS 95.2 0.0096 3.3E-07 31.4 1.8 44 98-142 2-49 (51)
81 3lqh_A Histone-lysine N-methyl 95.1 0.0083 2.8E-07 40.5 1.8 47 97-144 3-64 (183)
82 2yql_A PHD finger protein 21A; 95.1 0.0024 8.2E-08 34.6 -0.8 44 95-142 8-55 (56)
83 1we9_A PHD finger family prote 95.0 0.0051 1.7E-07 34.1 0.4 48 95-143 5-58 (64)
84 3u5n_A E3 ubiquitin-protein li 94.9 0.0056 1.9E-07 42.1 0.5 45 95-143 6-54 (207)
85 1fp0_A KAP-1 corepressor; PHD 94.7 0.019 6.5E-07 34.0 2.3 46 94-143 23-72 (88)
86 1xwh_A Autoimmune regulator; P 94.6 0.004 1.4E-07 34.8 -0.6 44 95-142 7-54 (66)
87 2k16_A Transcription initiatio 94.6 0.011 3.7E-07 33.8 1.1 49 95-144 17-69 (75)
88 2ysm_A Myeloid/lymphoid or mix 94.1 0.014 4.8E-07 36.0 0.9 37 95-132 6-42 (111)
89 3ql9_A Transcriptional regulat 94.1 0.041 1.4E-06 34.9 3.0 47 93-143 54-111 (129)
90 2lbm_A Transcriptional regulat 94.1 0.096 3.3E-06 33.8 4.8 47 93-143 60-117 (142)
91 2puy_A PHD finger protein 21A; 93.7 0.0078 2.7E-07 32.9 -0.8 44 96-143 5-52 (60)
92 2lv9_A Histone-lysine N-methyl 93.4 0.036 1.2E-06 33.4 1.9 44 97-142 29-75 (98)
93 1wep_A PHF8; structural genomi 93.3 0.11 3.8E-06 29.9 3.7 47 96-144 12-64 (79)
94 2ku3_A Bromodomain-containing 92.9 0.038 1.3E-06 31.3 1.3 48 95-142 15-65 (71)
95 2ro1_A Transcription intermedi 92.8 0.021 7.3E-07 38.7 0.1 43 97-143 3-49 (189)
96 2l43_A N-teminal domain from h 92.5 0.025 8.5E-07 33.5 0.2 50 95-144 24-76 (88)
97 2e6r_A Jumonji/ARID domain-con 92.4 0.014 4.8E-07 34.9 -1.0 46 96-142 16-65 (92)
98 2vpb_A Hpygo1, pygopus homolog 92.4 0.12 4.1E-06 28.7 2.9 32 96-127 8-40 (65)
99 3v43_A Histone acetyltransfera 92.2 0.037 1.3E-06 34.2 0.7 45 98-142 63-111 (112)
100 1wem_A Death associated transc 92.0 0.065 2.2E-06 30.6 1.6 47 96-144 16-71 (76)
101 3m62_A Ubiquitin conjugation f 91.8 0.13 4.5E-06 42.9 3.7 50 93-146 888-938 (968)
102 1wen_A Inhibitor of growth fam 91.7 0.14 4.8E-06 28.9 2.7 46 95-144 15-66 (71)
103 2kgg_A Histone demethylase jar 91.4 0.21 7.2E-06 26.2 3.1 43 98-141 4-52 (52)
104 3o70_A PHD finger protein 13; 91.0 0.041 1.4E-06 30.8 -0.0 45 96-142 19-66 (68)
105 3shb_A E3 ubiquitin-protein li 90.8 0.033 1.1E-06 32.1 -0.6 44 98-142 28-76 (77)
106 4gne_A Histone-lysine N-methyl 90.0 0.19 6.5E-06 30.8 2.4 44 95-143 14-62 (107)
107 1weu_A Inhibitor of growth fam 89.8 0.27 9.4E-06 29.1 2.9 47 95-145 35-87 (91)
108 2rsd_A E3 SUMO-protein ligase 89.8 0.034 1.2E-06 31.2 -1.1 45 97-142 11-64 (68)
109 2e6s_A E3 ubiquitin-protein li 89.7 0.064 2.2E-06 30.8 0.0 45 97-142 27-76 (77)
110 1wew_A DNA-binding family prot 89.5 0.15 5.1E-06 29.3 1.5 47 96-144 16-73 (78)
111 3v43_A Histone acetyltransfera 89.4 0.66 2.2E-05 28.4 4.5 32 97-129 6-43 (112)
112 3asl_A E3 ubiquitin-protein li 88.9 0.085 2.9E-06 29.7 0.1 45 98-143 20-69 (70)
113 2yt5_A Metal-response element- 88.1 0.22 7.7E-06 27.4 1.6 50 95-144 5-62 (66)
114 3c6w_A P28ING5, inhibitor of g 87.2 0.12 4E-06 28.1 0.0 43 96-142 9-57 (59)
115 2xb1_A Pygopus homolog 2, B-ce 87.1 0.3 1E-05 29.7 1.9 48 97-144 4-62 (105)
116 2ri7_A Nucleosome-remodeling f 87.1 0.12 4.3E-06 34.2 0.1 45 96-142 8-58 (174)
117 2kwj_A Zinc finger protein DPF 86.8 0.099 3.4E-06 32.3 -0.5 33 97-130 2-41 (114)
118 2vnf_A ING 4, P29ING4, inhibit 86.7 0.12 4.1E-06 28.1 -0.1 43 96-142 10-58 (60)
119 2g6q_A Inhibitor of growth pro 84.8 0.18 6.3E-06 27.6 0.0 43 96-142 11-59 (62)
120 2ysm_A Myeloid/lymphoid or mix 84.5 0.12 4E-06 31.8 -1.0 44 98-142 56-103 (111)
121 3ask_A E3 ubiquitin-protein li 83.8 0.21 7.3E-06 34.7 -0.0 45 98-143 176-225 (226)
122 3o7a_A PHD finger protein 13 v 83.7 0.14 4.6E-06 27.0 -0.8 42 101-143 8-52 (52)
123 2cs3_A Protein C14ORF4, MY039 83.0 1.2 4.2E-05 25.6 3.0 39 95-133 14-52 (93)
124 2gmg_A Hypothetical protein PF 82.9 0.21 7.2E-06 30.4 -0.3 21 118-143 73-93 (105)
125 1wee_A PHD finger family prote 82.7 0.17 5.9E-06 28.5 -0.7 47 96-144 16-67 (72)
126 1z60_A TFIIH basal transcripti 82.4 0.8 2.7E-05 24.8 2.0 42 97-140 16-58 (59)
127 3i2d_A E3 SUMO-protein ligase 81.3 1.1 3.9E-05 33.3 3.1 48 97-147 250-301 (371)
128 4fo9_A E3 SUMO-protein ligase 81.1 1.2 4.1E-05 33.1 3.1 48 97-147 216-267 (360)
129 1z2q_A LM5-1; membrane protein 79.4 1.6 5.6E-05 25.1 2.8 35 96-130 21-55 (84)
130 2yw8_A RUN and FYVE domain-con 79.1 1.5 5E-05 25.2 2.5 35 96-130 19-53 (82)
131 1wfk_A Zinc finger, FYVE domai 78.8 2.1 7.2E-05 25.0 3.1 34 96-129 9-42 (88)
132 2jvx_A NF-kappa-B essential mo 78.7 0.37 1.3E-05 22.0 -0.1 11 135-145 4-14 (28)
133 2kwj_A Zinc finger protein DPF 78.6 0.19 6.5E-06 31.0 -1.6 45 98-143 60-108 (114)
134 3t7l_A Zinc finger FYVE domain 78.0 1.6 5.3E-05 25.7 2.4 35 96-130 20-54 (90)
135 3mjh_B Early endosome antigen 77.8 0.24 8.2E-06 23.7 -1.0 15 96-110 5-19 (34)
136 1joc_A EEA1, early endosomal a 77.4 1.5 5.3E-05 27.4 2.4 34 97-130 70-103 (125)
137 2cu8_A Cysteine-rich protein 2 77.1 2.4 8.1E-05 23.6 3.0 39 97-146 10-48 (76)
138 1x4u_A Zinc finger, FYVE domai 76.2 2 6.7E-05 24.8 2.5 34 96-129 14-47 (84)
139 1iml_A CRIP, cysteine rich int 75.4 2.1 7.1E-05 23.8 2.4 41 97-142 28-69 (76)
140 1x4i_A Inhibitor of growth pro 74.3 1.6 5.3E-05 24.4 1.6 41 97-142 7-54 (70)
141 2dj7_A Actin-binding LIM prote 73.8 4.8 0.00017 22.7 3.8 38 97-145 16-53 (80)
142 1wyh_A SLIM 2, skeletal muscle 73.7 4.4 0.00015 22.0 3.5 40 97-146 6-45 (72)
143 3f6q_B LIM and senescent cell 73.4 2 6.7E-05 23.4 2.0 39 97-145 12-50 (72)
144 1zbd_B Rabphilin-3A; G protein 73.4 2.1 7.1E-05 27.2 2.2 34 95-128 54-88 (134)
145 1g47_A Pinch protein; LIM doma 72.7 3.4 0.00012 22.8 2.9 39 97-145 12-50 (77)
146 2jny_A Uncharacterized BCR; st 72.4 0.61 2.1E-05 25.9 -0.4 20 127-146 3-22 (67)
147 1vfy_A Phosphatidylinositol-3- 72.4 2.8 9.5E-05 23.4 2.4 33 97-129 12-44 (73)
148 2jmi_A Protein YNG1, ING1 homo 71.5 0.78 2.7E-05 27.1 -0.1 42 96-142 26-75 (90)
149 2co8_A NEDD9 interacting prote 70.8 6.5 0.00022 22.2 3.9 38 97-145 16-53 (82)
150 1weo_A Cellulose synthase, cat 70.8 13 0.00046 21.7 5.3 50 96-145 16-69 (93)
151 3a1b_A DNA (cytosine-5)-methyl 70.3 4.1 0.00014 26.6 3.1 36 95-133 78-114 (159)
152 2d8v_A Zinc finger FYVE domain 70.0 3.7 0.00013 22.6 2.4 30 96-130 8-38 (67)
153 2jwa_A Receptor tyrosine-prote 69.5 9.1 0.00031 19.3 4.2 8 41-48 30-37 (44)
154 1x61_A Thyroid receptor intera 69.1 6.8 0.00023 21.2 3.6 27 98-126 7-33 (72)
155 1x4k_A Skeletal muscle LIM-pro 69.0 4.7 0.00016 21.9 2.9 39 97-145 6-44 (72)
156 1wev_A Riken cDNA 1110020M19; 69.0 1.2 4.2E-05 26.0 0.4 47 96-142 16-71 (88)
157 1x4l_A Skeletal muscle LIM-pro 68.3 4.8 0.00016 21.9 2.8 39 97-145 6-46 (72)
158 1zfo_A LAsp-1; LIM domain, zin 67.2 1.9 6.6E-05 19.8 0.8 28 97-127 4-31 (31)
159 1a7i_A QCRP2 (LIM1); LIM domai 67.1 1.4 4.8E-05 24.9 0.4 38 97-145 8-45 (81)
160 1y02_A CARP2, FYVE-ring finger 66.8 0.63 2.2E-05 29.0 -1.2 45 97-141 20-64 (120)
161 2d8x_A Protein pinch; LIM doma 66.3 5.9 0.0002 21.4 2.9 37 97-145 6-42 (70)
162 1x63_A Skeletal muscle LIM-pro 66.2 7.2 0.00025 21.8 3.4 40 97-146 16-55 (82)
163 1dvp_A HRS, hepatocyte growth 65.4 3.1 0.00011 28.5 1.9 35 96-130 161-195 (220)
164 2rgt_A Fusion of LIM/homeobox 65.1 4.2 0.00014 26.5 2.5 39 97-145 66-104 (169)
165 2kpi_A Uncharacterized protein 64.6 0.38 1.3E-05 25.8 -2.2 17 129-145 5-21 (56)
166 2d8y_A Eplin protein; LIM doma 64.4 12 0.00041 21.4 4.2 38 97-145 16-53 (91)
167 1wd2_A Ariadne-1 protein homol 64.0 0.54 1.8E-05 25.5 -1.7 37 97-133 7-47 (60)
168 2cor_A Pinch protein; LIM doma 63.2 9.2 0.00032 21.3 3.4 37 97-145 16-52 (79)
169 3zyq_A Hepatocyte growth facto 62.8 3.8 0.00013 28.3 2.0 35 96-130 164-198 (226)
170 2pv0_B DNA (cytosine-5)-methyl 62.0 7.2 0.00025 29.3 3.4 44 96-142 93-147 (386)
171 1nyp_A Pinch protein; LIM doma 61.1 6 0.0002 21.1 2.3 38 97-146 6-43 (66)
172 1x68_A FHL5 protein; four-and- 61.1 9.6 0.00033 20.9 3.2 39 97-145 6-46 (76)
173 1rut_X Flinc4, fusion protein 61.0 7.3 0.00025 25.8 3.1 38 98-145 71-108 (188)
174 1x62_A C-terminal LIM domain p 60.9 7.1 0.00024 21.7 2.6 36 97-144 16-51 (79)
175 1x64_A Alpha-actinin-2 associa 60.3 14 0.00047 21.0 3.9 39 96-146 25-63 (89)
176 4bbq_A Lysine-specific demethy 59.2 0.92 3.1E-05 27.8 -1.5 46 98-143 61-114 (117)
177 2o35_A Hypothetical protein DU 58.8 4 0.00014 24.4 1.3 11 122-132 43-53 (105)
178 3fyb_A Protein of unknown func 58.7 4.1 0.00014 24.3 1.3 11 122-132 42-52 (104)
179 2zet_C Melanophilin; complex, 58.2 6.9 0.00024 25.4 2.5 32 95-127 67-100 (153)
180 2ks1_B Epidermal growth factor 58.2 9.2 0.00032 19.2 2.4 8 22-29 12-19 (44)
181 2xjy_A Rhombotin-2; oncoprotei 56.1 8.2 0.00028 23.7 2.6 37 98-144 68-104 (131)
182 3vhs_A ATPase wrnip1; zinc fin 56.0 2.4 8.1E-05 18.6 -0.0 9 136-144 8-16 (29)
183 2l3k_A Rhombotin-2, linker, LI 55.4 7.9 0.00027 23.7 2.4 10 98-107 10-19 (123)
184 1wig_A KIAA1808 protein; LIM d 54.4 11 0.00038 20.6 2.7 36 98-145 7-42 (73)
185 1v6g_A Actin binding LIM prote 54.2 13 0.00044 20.7 3.0 37 97-145 16-52 (81)
186 3mpx_A FYVE, rhogef and PH dom 52.9 2.9 9.8E-05 31.4 0.0 49 96-144 375-430 (434)
187 2jtn_A LIM domain-binding prot 52.5 6.3 0.00022 25.9 1.7 44 97-146 88-131 (182)
188 2l4z_A DNA endonuclease RBBP8, 51.9 10 0.00034 23.4 2.4 38 97-145 62-99 (123)
189 2d8z_A Four and A half LIM dom 51.5 20 0.00068 19.1 3.4 37 97-145 6-42 (70)
190 2jne_A Hypothetical protein YF 51.0 5.1 0.00017 23.9 0.9 39 97-144 33-71 (101)
191 1loi_A Cyclic 3',5'-AMP specif 50.5 0.77 2.6E-05 19.6 -2.0 12 121-132 6-17 (26)
192 2dar_A PDZ and LIM domain prot 49.3 12 0.00041 21.3 2.4 37 97-145 26-62 (90)
193 1m3v_A FLIN4, fusion of the LI 49.3 13 0.00044 22.6 2.6 48 97-146 33-81 (122)
194 3arc_T Photosystem II reaction 48.9 20 0.00069 16.6 2.9 18 23-40 4-21 (32)
195 2ehe_A Four and A half LIM dom 48.1 15 0.00052 20.4 2.6 39 97-145 16-54 (82)
196 2jmo_A Parkin; IBR, E3 ligase, 48.0 1.2 3.9E-05 25.6 -2.3 20 117-138 55-74 (80)
197 2egq_A FHL1 protein; LIM domai 47.5 17 0.00058 19.8 2.8 38 97-145 16-57 (77)
198 2lcq_A Putative toxin VAPC6; P 47.2 3.7 0.00013 26.7 -0.2 21 118-144 138-158 (165)
199 2klu_A T-cell surface glycopro 45.4 23 0.00078 19.4 2.8 10 26-35 13-22 (70)
200 2xqn_T Testin, TESS; metal-bin 45.0 33 0.0011 20.7 4.1 45 97-146 31-75 (126)
201 2cuq_A Four and A half LIM dom 44.0 19 0.00064 19.8 2.6 37 97-145 16-52 (80)
202 3pwf_A Rubrerythrin; non heme 43.9 13 0.00045 24.4 2.1 19 118-143 144-162 (170)
203 2cur_A Skeletal muscle LIM-pro 43.4 30 0.001 18.3 3.3 37 97-145 6-42 (69)
204 2l9u_A Receptor tyrosine-prote 42.8 28 0.00095 16.4 4.8 16 26-41 9-24 (40)
205 2kdx_A HYPA, hydrogenase/ureas 42.7 8.5 0.00029 23.6 1.0 20 118-143 79-99 (119)
206 1lko_A Rubrerythrin all-iron(I 42.7 5.9 0.0002 26.5 0.3 20 118-143 161-180 (191)
207 2ct7_A Ring finger protein 31; 42.1 1.4 4.9E-05 25.5 -2.5 17 114-130 45-61 (86)
208 1b8t_A Protein (CRP1); LIM dom 42.1 20 0.00067 23.7 2.8 38 97-145 116-153 (192)
209 2dlo_A Thyroid receptor-intera 41.8 25 0.00085 19.4 2.9 37 97-145 16-52 (81)
210 2iyb_E Testin, TESS, TES; LIM 41.4 21 0.0007 18.9 2.4 38 97-145 3-43 (65)
211 2fiy_A Protein FDHE homolog; F 41.3 2.1 7.3E-05 31.1 -2.2 46 96-142 182-230 (309)
212 1l8d_A DNA double-strand break 40.8 5.2 0.00018 24.1 -0.2 8 97-104 48-55 (112)
213 4ayb_P DNA-directed RNA polyme 38.6 15 0.00051 18.7 1.3 11 134-144 23-33 (48)
214 2jrp_A Putative cytoplasmic pr 37.8 16 0.00053 21.0 1.5 10 98-107 4-13 (81)
215 2a20_A Regulating synaptic mem 37.8 1.9 6.3E-05 23.3 -2.2 34 96-130 9-43 (62)
216 1x3h_A Leupaxin; paxillin fami 37.4 33 0.0011 18.7 3.0 38 97-146 16-53 (80)
217 3kqi_A GRC5, PHD finger protei 37.2 33 0.0011 18.9 2.9 44 97-142 11-60 (75)
218 1j2o_A FLIN2, fusion of rhombo 37.0 27 0.00093 20.8 2.7 10 98-107 5-14 (114)
219 2lq6_A Bromodomain-containing 35.2 22 0.00074 20.5 1.9 32 97-129 18-50 (87)
220 2cup_A Skeletal muscle LIM-pro 34.3 22 0.00074 20.5 1.9 29 97-127 67-95 (101)
221 1iij_A ERBB-2 receptor protein 34.2 12 0.00041 17.8 0.5 6 42-47 27-32 (35)
222 1yuz_A Nigerythrin; rubrythrin 31.3 16 0.00054 24.7 1.0 19 118-143 177-195 (202)
223 2yqp_A Probable ATP-dependent 30.1 43 0.0015 17.8 2.3 22 82-103 5-26 (60)
224 2k9p_A Pheromone alpha factor 26.9 92 0.0032 17.6 4.0 34 3-40 7-40 (80)
225 6rxn_A Rubredoxin; electron tr 26.3 21 0.00072 18.0 0.7 8 136-143 32-39 (46)
226 2roo_A Neurotoxin MAGI-4; spid 25.8 1.7 5.6E-05 21.4 -3.4 16 124-139 18-33 (43)
227 1lv3_A Hypothetical protein YA 25.1 16 0.00056 20.1 0.2 10 135-144 10-19 (68)
228 2pk7_A Uncharacterized protein 24.9 41 0.0014 18.5 1.8 11 97-107 9-19 (69)
229 2k21_A Potassium voltage-gated 24.4 1.4E+02 0.0046 18.7 5.8 10 22-31 52-61 (138)
230 1qdp_A Robustoxin; neurotoxin, 24.0 1.7 5.9E-05 21.2 -3.5 16 124-139 18-33 (42)
231 3kv5_D JMJC domain-containing 23.9 55 0.0019 25.3 2.9 44 97-142 38-87 (488)
232 1e8j_A Rubredoxin; iron-sulfur 23.8 28 0.00094 18.0 0.9 8 136-143 38-45 (52)
233 3ihp_A Ubiquitin carboxyl-term 23.5 21 0.00071 29.7 0.5 26 115-143 174-199 (854)
234 2v3b_B Rubredoxin 2, rubredoxi 23.3 28 0.00095 18.2 0.8 8 136-143 38-45 (55)
235 4rxn_A Rubredoxin; electron tr 22.5 27 0.00092 18.3 0.7 12 97-108 4-15 (54)
236 4fbl_A LIPS lipolytic enzyme; 22.5 53 0.0018 22.4 2.4 24 111-134 250-281 (281)
237 2csz_A Synaptotagmin-like prot 22.4 80 0.0027 17.8 2.7 34 93-126 22-56 (76)
238 1r79_A Diacylglycerol kinase, 22.0 1.2E+02 0.0041 17.3 3.5 39 97-139 39-80 (84)
239 1yk4_A Rubredoxin, RD; electro 21.9 28 0.00096 18.0 0.7 8 136-143 37-44 (52)
240 1wvk_A AT2G23090/F21P24.15; st 21.4 17 0.00057 21.1 -0.3 11 96-106 45-55 (86)
241 1pft_A TFIIB, PFTFIIBN; N-term 21.2 26 0.00088 17.6 0.4 6 137-142 8-13 (50)
242 3ph0_C ASCG; type III secretio 20.7 66 0.0023 17.1 1.9 18 118-135 17-36 (61)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=128.67 Aligned_cols=78 Identities=31% Similarity=0.636 Sum_probs=67.9
Q ss_pred CCCCCCHHHHhcCCCccccCCccCCCCCccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 68 DRPLRHQRVIEKLPPAEKYDGHLHNKKFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 68 ~~~~~~~~~i~~lp~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
...+++++.++.+|...+...... ..++..|+||+++|..++.++.+| |||.||..||+.|+..+.+||+||+.+.++
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGA-VGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSS-SSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred CCCCCCHHHHHhCCCeeecccccc-cCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 456899999999999888765432 234578999999999999999999 999999999999999999999999998764
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=5e-23 Score=121.71 Aligned_cols=69 Identities=32% Similarity=0.752 Sum_probs=58.7
Q ss_pred HHhcCCCccccCCccCCCCCccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 76 VIEKLPPAEKYDGHLHNKKFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 76 ~i~~lp~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
.++++|..++..... ..++..|+||+++|..++.++.+| |+|.||.+||+.|++.+.+||+||+++.+.
T Consensus 5 ~i~~lp~~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNH--QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSC--SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccc--cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 456788887765432 233578999999999999999999 999999999999999999999999999875
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.82 E-value=4.7e-21 Score=106.57 Aligned_cols=50 Identities=38% Similarity=0.971 Sum_probs=46.5
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
+.+|+||+++|.+++.+..+|.|||.||.+||++|++.+.+||+||+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46899999999999988888779999999999999999999999999875
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=108.85 Aligned_cols=52 Identities=37% Similarity=0.885 Sum_probs=47.5
Q ss_pred CCccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 94 KFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 94 ~~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..+..|+||++.|..++.++.+| |||.||..||..|+..+.+||+||+.+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 34478999999999988999999 99999999999999999999999998764
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-20 Score=109.20 Aligned_cols=51 Identities=35% Similarity=0.989 Sum_probs=47.2
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
.+..|+||+++|..++.++++| |+|.||.+||..|++.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3478999999999999999999 99999999999999999999999998864
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=5.1e-20 Score=109.45 Aligned_cols=52 Identities=37% Similarity=0.979 Sum_probs=47.7
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
+..+|+||++.|..++.++++| |+|.||..||..|++.+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3478999999999999999999 999999999999999999999999988653
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.6e-20 Score=110.04 Aligned_cols=50 Identities=24% Similarity=0.734 Sum_probs=41.5
Q ss_pred cccccccccccC-----------CCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVS-----------GDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~-----------~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
+.|+||+++|.+ ++.++++|.|||.||.+||++||+.+.+||+||+++..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 568888877754 45566666699999999999999999999999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.76 E-value=3.3e-19 Score=98.97 Aligned_cols=49 Identities=31% Similarity=0.827 Sum_probs=43.5
Q ss_pred ccccccccccccCC-CeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 96 TSECVICLEEFVSG-DLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 96 ~~~C~ICl~~~~~~-~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
+..|+||+++|.++ +.++.+| |||.||.+||+.|+..+.+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46899999999654 4677888 9999999999999999999999999874
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.74 E-value=7.3e-19 Score=102.52 Aligned_cols=52 Identities=31% Similarity=0.644 Sum_probs=45.3
Q ss_pred CccccccccccccCC----CeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 95 FTSECVICLEEFVSG----DLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~----~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
++..|+||++.|.+. +.+..++ |||.||.+||+.|++.+.+||+||+++..+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 347899999999763 5667888 999999999999999999999999998764
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.74 E-value=1.3e-18 Score=108.85 Aligned_cols=48 Identities=27% Similarity=0.665 Sum_probs=42.0
Q ss_pred ccccccccccccCCC---------------eeeecCCCCccchHHhHHHHHhCCCCCcccCCCC
Q 045986 96 TSECVICLEEFVSGD---------------LFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSI 144 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~---------------~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 144 (148)
++.|+||+++|.+.- .++.++ |+|.||..||++||..+.+||+||+.+
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 468999999998641 367788 999999999999999999999999985
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.73 E-value=1.3e-18 Score=99.38 Aligned_cols=51 Identities=29% Similarity=0.670 Sum_probs=44.8
Q ss_pred ccccccccccccCC----CeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 96 TSECVICLEEFVSG----DLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 96 ~~~C~ICl~~~~~~----~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
+.+|+||++.+.+. +.+..++ |||.||.+||..|++.+.+||+||+++..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 46899999999763 4567888 999999999999999999999999998764
No 12
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2e-18 Score=102.64 Aligned_cols=52 Identities=25% Similarity=0.652 Sum_probs=44.0
Q ss_pred CCccccccccccccCCCeeeecCCCC-----ccchHHhHHHHHhCC--CCCcccCCCCCCC
Q 045986 94 KFTSECVICLEEFVSGDLFRILPFCK-----HVYHSHCIIRWFSDE--FTCPICRSSIYLD 147 (148)
Q Consensus 94 ~~~~~C~ICl~~~~~~~~vr~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~ 147 (148)
.++..|+||+++|.+++.+ ++| |+ |.||.+||++||..+ .+||+||+.+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3457899999999887776 689 96 999999999999875 4899999988653
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-18 Score=99.18 Aligned_cols=51 Identities=31% Similarity=0.653 Sum_probs=44.3
Q ss_pred CccccccccccccCC----CeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 95 FTSECVICLEEFVSG----DLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~----~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
+...|+||++.|.+. ..+..++ |||.||.+||+.|+..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 347899999999764 4557788 99999999999999999999999998864
No 14
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.72 E-value=4.1e-18 Score=108.16 Aligned_cols=49 Identities=24% Similarity=0.813 Sum_probs=41.0
Q ss_pred ccccccccccccCCC---------------eeeecCCCCccchHHhHHHHH-----hCCCCCcccCCCCC
Q 045986 96 TSECVICLEEFVSGD---------------LFRILPFCKHVYHSHCIIRWF-----SDEFTCPICRSSIY 145 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~---------------~vr~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~~~ 145 (148)
+..|+|||++|..+. .++.++ |+|.||.+||+.|+ ..+.+||+||+.+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 358999999997653 455788 99999999999999 45778999999774
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6e-18 Score=98.40 Aligned_cols=47 Identities=36% Similarity=0.878 Sum_probs=42.2
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
...|+||++.+.+ ..+| |||.||..||..|+..+.+||+||+.+...
T Consensus 15 ~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 15 EEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 4689999999876 6789 999999999999999999999999988653
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=95.53 Aligned_cols=50 Identities=26% Similarity=0.548 Sum_probs=42.4
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
+...|+||++.|.+. +..++ |||.||..||..|+..+.+||+||+.+..+
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 347899999998763 33347 999999999999999999999999988754
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=96.25 Aligned_cols=48 Identities=35% Similarity=0.625 Sum_probs=41.9
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
++..|+||++.+.+. ..+| |||.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 347899999998654 6678 99999999999999999999999998753
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-17 Score=98.28 Aligned_cols=52 Identities=27% Similarity=0.693 Sum_probs=44.7
Q ss_pred CccccccccccccCCCe-eeecCCCCccchHHhHHHHHhCC---CCCcccCCCCCCC
Q 045986 95 FTSECVICLEEFVSGDL-FRILPFCKHVYHSHCIIRWFSDE---FTCPICRSSIYLD 147 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~-vr~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~~~~~ 147 (148)
+..+|+||++.|.+++. .+.+| |||.||.+||..|+..+ .+||+||..+..+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34789999999988664 77888 99999999999999875 7899999987653
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.67 E-value=3.7e-18 Score=108.17 Aligned_cols=49 Identities=27% Similarity=0.673 Sum_probs=0.4
Q ss_pred ccccccccccccCC-------------C--eeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 96 TSECVICLEEFVSG-------------D--LFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 96 ~~~C~ICl~~~~~~-------------~--~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
++.|+||+++|++. + .+..++ |+|.||.+||++||+.+.+||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 46899999999752 2 233356 9999999999999999999999999853
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.67 E-value=2.6e-17 Score=95.08 Aligned_cols=47 Identities=36% Similarity=0.890 Sum_probs=41.6
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
+..|+||++.+.+ .+..+| |||.||.+|+..|+..+.+||+||+++.
T Consensus 5 ~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4689999999864 357889 9999999999999999999999999875
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-16 Score=91.17 Aligned_cols=49 Identities=24% Similarity=0.518 Sum_probs=41.6
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHh-CCCCCcccCCCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFS-DEFTCPICRSSIYLDA 148 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~~~ 148 (148)
...|+||++.+.+. ..++ |||.||..||..|+. .+.+||+||+.+..++
T Consensus 15 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 47899999999765 3478 999999999999994 5678999999987653
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3e-16 Score=91.79 Aligned_cols=50 Identities=28% Similarity=0.606 Sum_probs=41.9
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHh---CCCCCcccCCCCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFS---DEFTCPICRSSIYLDA 148 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~~~~~~ 148 (148)
+...|+||++.|.+ ...+| |||.||.+||..|++ .+.+||+||+.+..++
T Consensus 19 ~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 19 EEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred cCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34789999999875 35678 999999999999997 4568999999987653
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-16 Score=92.21 Aligned_cols=49 Identities=24% Similarity=0.597 Sum_probs=41.0
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCC--CCCcccCCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDE--FTCPICRSSIYL 146 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~ 146 (148)
+...|+||++.|.+. ..+|.|||.||..||..|+..+ .+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 357899999999764 4577699999999999999865 689999998654
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.7e-16 Score=93.90 Aligned_cols=47 Identities=23% Similarity=0.619 Sum_probs=41.2
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
....|+||++.|.+. .++| |||.||..||..|+..+.+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 346899999998663 4688 9999999999999999999999999874
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.61 E-value=2.8e-16 Score=102.91 Aligned_cols=46 Identities=39% Similarity=0.943 Sum_probs=41.0
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..|+||++.|.++ ..+| |||.||..||..|+..+.+||+||+++..
T Consensus 54 ~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4799999998653 6789 99999999999999999999999998753
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.60 E-value=3.8e-16 Score=101.24 Aligned_cols=51 Identities=31% Similarity=0.690 Sum_probs=44.8
Q ss_pred ccccccccccccCC----CeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 96 TSECVICLEEFVSG----DLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 96 ~~~C~ICl~~~~~~----~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
+..|+||++.|.+. +.++.++ |||.||.+||+.|++.+.+||+||+.+..+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 46899999999764 5667888 999999999999999999999999988653
No 27
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=89.07 Aligned_cols=48 Identities=23% Similarity=0.574 Sum_probs=41.3
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCC--CCCcccCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDE--FTCPICRSSIYL 146 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~ 146 (148)
..+|+||.+.+..++... . |+|.||..||++||+.+ .+||+||++...
T Consensus 15 i~~C~IC~~~i~~g~~C~--~-C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCE--T-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECS--S-SCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccC--C-CCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 478999999998775444 4 99999999999999987 789999998654
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=1.8e-15 Score=90.83 Aligned_cols=49 Identities=27% Similarity=0.583 Sum_probs=42.0
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhC------CCCCcccCCCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD------EFTCPICRSSIYLD 147 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~~~~~ 147 (148)
+...|+||++.|.+. .++| |||.||..||..|+.. +.+||+||..+..+
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 346899999998765 4788 9999999999999987 66799999988754
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.58 E-value=1.7e-15 Score=89.70 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=41.6
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhC-CCCCcccCCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD-EFTCPICRSSIYLD 147 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 147 (148)
...|+||++.|.+. .+++ |||.||..||..|+.. +.+||+||.++..+
T Consensus 8 ~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 8 YFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 47899999998764 5678 9999999999999987 78899999988653
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.58 E-value=4.1e-16 Score=92.56 Aligned_cols=49 Identities=29% Similarity=0.560 Sum_probs=41.6
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhC-------CCCCcccCCCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD-------EFTCPICRSSIYLD 147 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~~~~~ 147 (148)
++..|+||++.|.+. ..+| |||.||.+||..|+.. +.+||+||..+..+
T Consensus 11 ~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 347899999999764 4578 9999999999999987 56799999988653
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.58 E-value=6.2e-16 Score=95.90 Aligned_cols=49 Identities=29% Similarity=0.734 Sum_probs=41.1
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCC-CCCcccCCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDE-FTCPICRSSIYLD 147 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~~ 147 (148)
...|+||++.|.+ .+..++ |||.||..||..|+..+ .+||+||.++..+
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 3689999999965 333378 99999999999999987 6899999988653
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.57 E-value=2.1e-15 Score=86.31 Aligned_cols=51 Identities=20% Similarity=0.456 Sum_probs=41.5
Q ss_pred ccccccccc-cccCCCee-eecCCCCccchHHhHHHHHhC-CCCCcccCCCCCCC
Q 045986 96 TSECVICLE-EFVSGDLF-RILPFCKHVYHSHCIIRWFSD-EFTCPICRSSIYLD 147 (148)
Q Consensus 96 ~~~C~ICl~-~~~~~~~v-r~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 147 (148)
+..|+||++ .|.+.... ..++ |||.||..||+.|+.. +.+||+||..+..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 368999999 77776543 4567 9999999999999765 56799999998764
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2e-15 Score=90.56 Aligned_cols=48 Identities=31% Similarity=0.670 Sum_probs=41.6
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhC------CCCCcccCCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD------EFTCPICRSSIYLD 147 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~~~~~ 147 (148)
...|+||++.|.+. ..+| |||.||.+|+..|+.. +.+||+||..+..+
T Consensus 19 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 19 EVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 46899999998764 5678 9999999999999987 77899999988754
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.56 E-value=9.7e-16 Score=99.31 Aligned_cols=52 Identities=31% Similarity=0.644 Sum_probs=44.8
Q ss_pred CccccccccccccCC----CeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 95 FTSECVICLEEFVSG----DLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~----~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
+...|+||++.|.+. ..+..++ |||.||..||++|++.+.+||+||+++..+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 347899999999763 3456778 999999999999999999999999998764
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=93.63 Aligned_cols=48 Identities=33% Similarity=0.670 Sum_probs=40.8
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
...|+||++.|.+. +..++ |||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 36899999998763 33347 99999999999999999999999998764
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=8.2e-15 Score=83.25 Aligned_cols=42 Identities=29% Similarity=0.657 Sum_probs=36.0
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHh---CCCCCccc
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFS---DEFTCPIC 140 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C 140 (148)
++..|+||++.|.+. .++| |||.||..||..|++ .+.+||+|
T Consensus 19 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 347899999998764 5678 999999999999998 46689998
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6.6e-15 Score=82.20 Aligned_cols=42 Identities=36% Similarity=1.051 Sum_probs=35.5
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHh---CCCCCccc
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFS---DEFTCPIC 140 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C 140 (148)
+...|+||++.+.+. ..++ |||.||.+||..|+. .+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 346899999999775 5578 999999999999954 56789998
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.53 E-value=5.2e-15 Score=92.92 Aligned_cols=48 Identities=29% Similarity=0.730 Sum_probs=41.3
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
+..|+||++.|.+ .+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3689999999865 344448 99999999999999999999999998864
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.51 E-value=1.7e-14 Score=97.02 Aligned_cols=72 Identities=22% Similarity=0.451 Sum_probs=50.4
Q ss_pred CCCHHHHhcCCCccccCCcc-----CCCCCccccccccccccCCCeeeecCCCCccchHHhHHHHHhC-CCCCcccCCCC
Q 045986 71 LRHQRVIEKLPPAEKYDGHL-----HNKKFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD-EFTCPICRSSI 144 (148)
Q Consensus 71 ~~~~~~i~~lp~~~~~~~~~-----~~~~~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~ 144 (148)
+++...+.+.+......+.. ....+...|+||++.|.+ .+..+| |||.||..||..|+.. +.+||+||..+
T Consensus 24 ~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 24 ELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp CCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred cCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 45555555555433333221 111234689999999875 344458 9999999999999997 78899999988
Q ss_pred C
Q 045986 145 Y 145 (148)
Q Consensus 145 ~ 145 (148)
.
T Consensus 101 ~ 101 (165)
T 2ckl_B 101 V 101 (165)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=87.39 Aligned_cols=47 Identities=26% Similarity=0.645 Sum_probs=39.7
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCC--CCCcccCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDE--FTCPICRSSI 144 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~ 144 (148)
++..|+||++.|.+. ..+|.|||.||..||..|+..+ .+||+||..+
T Consensus 12 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 347899999999764 5677699999999999999753 5899999987
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=93.53 Aligned_cols=47 Identities=28% Similarity=0.598 Sum_probs=40.2
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC-CCcccCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF-TCPICRSSIYL 146 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~ 146 (148)
...|+||++.|.+. ..+| |||.||..||..|+..+. +||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 36799999998754 5678 999999999999998644 89999998865
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.49 E-value=1.3e-14 Score=91.49 Aligned_cols=47 Identities=28% Similarity=0.754 Sum_probs=40.2
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC---CCcccCCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF---TCPICRSSIYLD 147 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~~~~~ 147 (148)
..|+||++.|.+. ..+| |||.||..||..|+..+. +||+||..+..+
T Consensus 22 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 22 LECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp TSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 5799999998764 4578 999999999999998754 899999988654
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.47 E-value=6.6e-15 Score=93.56 Aligned_cols=47 Identities=28% Similarity=0.631 Sum_probs=40.5
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhC-CCCCcccCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD-EFTCPICRSSIYL 146 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 146 (148)
...|+||++.+.+. ..++ |||.||..||..|+.. +.+||+||.++..
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 36899999998654 4578 9999999999999987 7789999998764
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.47 E-value=2e-14 Score=91.63 Aligned_cols=48 Identities=29% Similarity=0.582 Sum_probs=41.2
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC-CCcccCCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF-TCPICRSSIYL 146 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~ 146 (148)
+...|+||++.+.+. ..++ |||.||..||..|+..+. +||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 347899999998764 5678 999999999999998765 89999998865
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.45 E-value=4.4e-14 Score=93.57 Aligned_cols=48 Identities=27% Similarity=0.574 Sum_probs=41.0
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC-CCcccCCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF-TCPICRSSIYLD 147 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~~ 147 (148)
...|+||++.|.+. .++| |||.||..||..|+.... +||+||.++..+
T Consensus 78 ~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 36899999998664 5588 999999999999998754 899999998754
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.44 E-value=1.1e-13 Score=81.75 Aligned_cols=51 Identities=27% Similarity=0.449 Sum_probs=40.0
Q ss_pred CccccccccccccCCC-eeeecCCCCccchHHhHHHHHhC-CCCCcccCCCCCC
Q 045986 95 FTSECVICLEEFVSGD-LFRILPFCKHVYHSHCIIRWFSD-EFTCPICRSSIYL 146 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~-~vr~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 146 (148)
++.+|+||++.+...+ .+..++ |||.||..|+..++.. +..||+||+++..
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3478999999986543 233356 9999999999999854 6679999998765
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.44 E-value=1.2e-13 Score=85.40 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=43.8
Q ss_pred CCccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 94 KFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 94 ~~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
.+...|+||++-|.+. .++| |||.|+..||..|+..+.+||+||.++..+
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 4457899999998775 6788 999999999999999999999999988654
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.43 E-value=1.5e-14 Score=91.75 Aligned_cols=46 Identities=30% Similarity=0.758 Sum_probs=39.9
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhC-CCCCcccCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD-EFTCPICRSSIY 145 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 145 (148)
+..|+||++.|.+. ..+| |||.||..||..|+.. +.+||+||..+.
T Consensus 15 ~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 46899999998764 5678 9999999999999977 678999999874
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.43 E-value=5.5e-14 Score=80.06 Aligned_cols=46 Identities=28% Similarity=0.522 Sum_probs=39.0
Q ss_pred ccccccccccccCCCeeee--cCCCCcc-chHHhHHHHHhCCCCCcccCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRI--LPFCKHV-YHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~--lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
+.+|+||++.+.+. .. +| |||. |+.+|+..|.+.+.+||+||+++.
T Consensus 8 ~~~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKNG---CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSCE---EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred cCCCCcCCCCCCCE---EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 46899999986543 33 49 9999 899999999999999999999874
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.41 E-value=4.4e-14 Score=78.36 Aligned_cols=45 Identities=31% Similarity=0.663 Sum_probs=38.6
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
...|+||++.|.+. ++|| |||.||..|+..| ..+||+||+.+..+
T Consensus 6 ~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 46899999999765 7789 9999999999884 67899999988654
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.40 E-value=1.2e-13 Score=78.47 Aligned_cols=48 Identities=25% Similarity=0.450 Sum_probs=39.1
Q ss_pred ccccccccccccCCCeeeecCCCCcc-chHHhHHHHHhCCCCCcccCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHV-YHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
...|+||++...+. .+..+| |||. |+.+|+..|.+.+.+||+||+++.
T Consensus 7 ~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 46899999986443 122349 9998 999999999988889999999874
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.39 E-value=2.2e-13 Score=81.82 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=42.6
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
+...|+||++-|.+. .+++ |||.|+..||..|+..+.+||+||.++..
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 357899999998775 6788 99999999999999988999999998764
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.38 E-value=2.3e-13 Score=101.81 Aligned_cols=46 Identities=33% Similarity=0.779 Sum_probs=40.5
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHh-CCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFS-DEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 146 (148)
.+|+||++.+.+ +..+| |||.||..|+..|+. .+.+||+||+++..
T Consensus 333 ~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 689999999754 57789 999999999999999 78899999998753
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.36 E-value=7.9e-13 Score=81.42 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=42.9
Q ss_pred CccccccccccccCCCeeeecCCCC-ccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCK-HVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
++..|+||++-|.+. .+++ || |.|+..||..|+..+.+||+||.++..+
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred HhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 357899999998775 5688 99 9999999999999999999999988654
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.34 E-value=2.3e-13 Score=89.25 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=39.8
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC-CCcccCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF-TCPICRSSIY 145 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~ 145 (148)
+...|+||++.+.+. ..++ |||.||..||..|+.... +||+||.++.
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 347899999998765 4578 999999999999998654 8999999753
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=3e-13 Score=86.02 Aligned_cols=44 Identities=23% Similarity=0.691 Sum_probs=38.3
Q ss_pred cccccccccccCCCeeeec-CCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRIL-PFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..|+||++.|.+. ..+ + |||.||..||..|+. .+||+||..+..
T Consensus 23 ~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 6899999999764 555 7 999999999999987 789999998754
No 57
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.31 E-value=1.3e-12 Score=73.16 Aligned_cols=47 Identities=28% Similarity=0.603 Sum_probs=37.4
Q ss_pred CccccccccccccCCCeeeecCCCC--c---cchHHhHHHHHhC--CCCCcccCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCK--H---VYHSHCIIRWFSD--EFTCPICRSSIY 145 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~--H---~FH~~Ci~~Wl~~--~~~CP~CR~~~~ 145 (148)
++..|.||+++. ++.+ ++| |+ | .||.+|++.|+.. +.+||+||..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 457899999983 3344 688 75 4 9999999999975 678999999875
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.31 E-value=4.4e-13 Score=98.15 Aligned_cols=52 Identities=23% Similarity=0.531 Sum_probs=40.1
Q ss_pred CCccccccccccccCCCee----eecCCCCccchHHhHHHHHhCC-----------CCCcccCCCCC
Q 045986 94 KFTSECVICLEEFVSGDLF----RILPFCKHVYHSHCIIRWFSDE-----------FTCPICRSSIY 145 (148)
Q Consensus 94 ~~~~~C~ICl~~~~~~~~v----r~lp~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~~~ 145 (148)
+...+|+||++.+.++..+ ...+.|||.||..|+.+||+.. .+||+||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3457999999999873322 2223499999999999999752 46999999875
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.28 E-value=5.6e-13 Score=78.01 Aligned_cols=41 Identities=27% Similarity=0.728 Sum_probs=35.8
Q ss_pred cccccccccccCCCeeeecCCCCcc-chHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHV-YHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+||++.+.+ ...+| |||. |+..|+..| .+||+||+++.
T Consensus 25 ~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 579999998754 46789 9999 999999999 78999999874
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.24 E-value=2.9e-12 Score=86.45 Aligned_cols=49 Identities=29% Similarity=0.620 Sum_probs=41.3
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCC-CCCcccCCCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDE-FTCPICRSSIYLD 147 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~~ 147 (148)
+...|+||++.|.+. ..++ |||.|+..||..|+..+ .+||+||.++..+
T Consensus 17 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 347899999998765 4578 99999999999999864 4899999988653
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=5.3e-12 Score=77.16 Aligned_cols=50 Identities=22% Similarity=0.657 Sum_probs=42.0
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhC--------CCCCcc--cCCC--CCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD--------EFTCPI--CRSS--IYL 146 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~--~~~ 146 (148)
..+|+||++++...+.++.++ |||.|+.+|+..++.. ..+||. |+.. +.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 468999999998887777778 9999999999999864 236999 9988 543
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.1e-11 Score=70.09 Aligned_cols=43 Identities=30% Similarity=0.792 Sum_probs=35.9
Q ss_pred CccccccccccccCCCeeeecCCCCcc-chHHhHHHHHhCCCCCcccCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHV-YHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
+...|.||++... .+..+| |||. |+..|+.. ..+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchh
Confidence 3478999999854 457899 9999 99999984 578999999874
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.3e-11 Score=75.45 Aligned_cols=45 Identities=27% Similarity=0.514 Sum_probs=37.0
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCC------CCCcc--cCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDE------FTCPI--CRSS 143 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~ 143 (148)
...|+||++.|.+. .++|.|||.|+..||..|+..+ .+||+ |+..
T Consensus 7 ~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46899999998764 4553499999999999999764 48999 9865
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.14 E-value=2.1e-11 Score=87.90 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=41.5
Q ss_pred CCccccccccccccCCCeeeecCCCCccchHHhHHHHHhC-CCCCcccCCCCCC
Q 045986 94 KFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD-EFTCPICRSSIYL 146 (148)
Q Consensus 94 ~~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 146 (148)
.....|+||++-|.++ .++| |||.|+..||..|+.. +.+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3457899999998765 6788 9999999999999986 4459999998864
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.9e-11 Score=71.63 Aligned_cols=42 Identities=26% Similarity=0.732 Sum_probs=34.9
Q ss_pred cccccccccccCCCeeeecCCCCcc-chHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHV-YHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..|+||++.+.+ +..+| |||. |+..|+.. ...||+||.++..
T Consensus 26 ~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 579999999755 46689 9999 99999964 4789999998753
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.06 E-value=2.1e-11 Score=72.09 Aligned_cols=41 Identities=32% Similarity=0.800 Sum_probs=34.9
Q ss_pred cccccccccccCCCeeeecCCCCcc-chHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHV-YHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+||++.+.+ +..+| |||. |+..|+..| ..||+||+++.
T Consensus 19 ~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 579999998644 57789 9999 999999987 38999999774
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.04 E-value=9.5e-11 Score=79.29 Aligned_cols=49 Identities=18% Similarity=0.082 Sum_probs=41.4
Q ss_pred CCccccccccccccCCCeeeecCCCCccchHHhHHHHHhCC-CCCcccCCCCCC
Q 045986 94 KFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDE-FTCPICRSSIYL 146 (148)
Q Consensus 94 ~~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 146 (148)
.....||||++-|.++ .++| |||.|...||..|+..+ .+||+||.++..
T Consensus 104 p~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4458899999998764 6678 99999999999999864 469999998764
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.94 E-value=2.4e-10 Score=64.13 Aligned_cols=47 Identities=11% Similarity=0.196 Sum_probs=40.6
Q ss_pred cccccccccccCCCeeeec-CCCCccchHHhHHHHHhCCCCCcccCCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRIL-PFCKHVYHSHCIIRWFSDEFTCPICRSSIYLD 147 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 147 (148)
..|+|+++-+.+. .++ + +||.|..+||.+|++.+.+||+.+.++..+
T Consensus 4 ~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 4799999999754 455 6 999999999999999988999999988654
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.89 E-value=2.4e-10 Score=84.92 Aligned_cols=42 Identities=33% Similarity=0.811 Sum_probs=36.2
Q ss_pred ccccccccccccCCCeeeecCCCCcc-chHHhHHHHHhCCCCCcccCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHV-YHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
+..|+||++.+.+ +..+| |||. ||..|+..| ..||+||.++.
T Consensus 295 ~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 3689999999754 46779 9999 999999998 68999999874
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.3e-09 Score=77.44 Aligned_cols=48 Identities=19% Similarity=0.472 Sum_probs=39.2
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCC--CCCcc--cCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDE--FTCPI--CRSSIYL 146 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~~~~ 146 (148)
...||||++.|.++ |+.+. |||.|++.||..|+..+ .+||+ ||..+..
T Consensus 181 el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 46899999999554 55456 99999999999999864 46999 9987654
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.69 E-value=1.6e-08 Score=61.18 Aligned_cols=45 Identities=29% Similarity=0.575 Sum_probs=37.1
Q ss_pred ccccccccccCCCeeeecCCCCccchHHhHHHHHhC-CCCCcccCCCCC
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD-EFTCPICRSSIY 145 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 145 (148)
.|++|--++ ....|..| |+|+|+.+|+..|.++ ..+||+|+.++.
T Consensus 3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 477786655 44679999 9999999999999865 678999999874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.38 E-value=3e-07 Score=64.93 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=37.9
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC--CCcccCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF--TCPICRSSIY 145 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~~~ 145 (148)
...|+||.+-...|... -. |+|.||..|++.|++.+. +||.|+...+
T Consensus 180 i~~C~iC~~iv~~g~~C--~~-C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSC--ET-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEEC--SS-SCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCccc--Cc-cChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 47899999988776322 23 999999999999998754 8999998754
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.44 E-value=0.00013 Score=41.13 Aligned_cols=46 Identities=20% Similarity=0.503 Sum_probs=34.3
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRSSIY 145 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~~~ 145 (148)
...|.||.+. ++.+.--. |...||..|+++.|.... .||.|++...
T Consensus 12 ~~~C~vC~~~---~~ll~Cd~-C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 12 GARCGVCGDG---TDVLRCTH-CAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TCCCTTTSCC---TTCEECSS-SCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCcCCCCCC---CeEEECCC-CCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 4679999754 55555444 899999999999887643 4999987543
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.69 E-value=0.00053 Score=40.77 Aligned_cols=44 Identities=27% Similarity=0.556 Sum_probs=36.9
Q ss_pred cccccccccccCCCeeeecCCC-CccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFC-KHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C-~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..|--|+-+.+ ..|+ | .|+++..|+...|.....||+|+.++++
T Consensus 29 ~nCKsCWf~~k--~LV~----C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 29 QFCKSCWFENK--GLVE----CNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCSSCSCCS--SEEE----CSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred ccChhhccccC--Ceee----ecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 67999998754 3343 6 6999999999999999999999998875
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.69 E-value=0.00095 Score=40.51 Aligned_cols=33 Identities=15% Similarity=0.402 Sum_probs=26.1
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHH
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRW 130 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~W 130 (148)
..|+||++++.......-++ |+|.|+..|+..+
T Consensus 4 ~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 57999998764444444488 9999999999983
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.14 E-value=0.0067 Score=35.31 Aligned_cols=35 Identities=26% Similarity=0.598 Sum_probs=23.4
Q ss_pred CCccccccccccccCCCeeeecCCCCccchHHhHHHH
Q 045986 94 KFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRW 130 (148)
Q Consensus 94 ~~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~W 130 (148)
.+++.|.||- .|..++...-=- |+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceecccc-ccccccHhhcccc
Confidence 3457899994 344443222222 7899999999996
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=95.86 E-value=0.0046 Score=34.03 Aligned_cols=44 Identities=23% Similarity=0.625 Sum_probs=31.3
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRS 142 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~ 142 (148)
++..|.+|... ++.+.--. |...||..|+++=+.... .||.|+.
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~-C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDT-CPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSS-SSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCC-CChhhhhhccCCCCCCCCCCceECccccc
Confidence 34789999874 55554443 888999999998654322 3999975
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=95.38 E-value=0.004 Score=34.29 Aligned_cols=47 Identities=26% Similarity=0.614 Sum_probs=32.0
Q ss_pred CCccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCCCC
Q 045986 94 KFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRSSI 144 (148)
Q Consensus 94 ~~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~~ 144 (148)
.++..|.||-+. ++.+.--. |...||..|+.+=|.... .||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~-C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDT-CPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSS-SCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCC-CCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345689999863 44444333 788999999987554422 399998754
No 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=95.23 E-value=0.0051 Score=41.47 Aligned_cols=46 Identities=24% Similarity=0.586 Sum_probs=33.0
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRSSI 144 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~~ 144 (148)
+++.|.+|.+. |+.+.--. |.-.||..|+++-+...+ .||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~-C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEK-CPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSS-SSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCC-CCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 34689999865 55444333 889999999988766532 399998754
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=95.15 E-value=0.0096 Score=31.37 Aligned_cols=44 Identities=20% Similarity=0.563 Sum_probs=29.5
Q ss_pred ccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCC
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRS 142 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~ 142 (148)
.|.||...-..++.+.--. |...||..|+++=+...+ .||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~-C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDE-CNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTT-TCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCC-CChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888987644444444343 889999999986444322 3999975
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.12 E-value=0.0083 Score=40.50 Aligned_cols=47 Identities=23% Similarity=0.477 Sum_probs=34.0
Q ss_pred cccccccccccCCC----eeeecCCCCccchHHhHHH------HHh-----CCCCCcccCCCC
Q 045986 97 SECVICLEEFVSGD----LFRILPFCKHVYHSHCIIR------WFS-----DEFTCPICRSSI 144 (148)
Q Consensus 97 ~~C~ICl~~~~~~~----~vr~lp~C~H~FH~~Ci~~------Wl~-----~~~~CP~CR~~~ 144 (148)
..|+||...|.+++ .|.--. |...||..|+.- -+. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~-C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGK-CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTT-TCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCC-CCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 46999999998876 444444 899999999732 111 146799998754
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.07 E-value=0.0024 Score=34.55 Aligned_cols=44 Identities=27% Similarity=0.644 Sum_probs=31.1
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRS 142 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~ 142 (148)
++..|.+|... ++.+.--. |...||..|+++=|...+ .||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~-C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDT-CSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSS-SSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCC-CCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34689999875 55554444 889999999997554432 3998864
No 83
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.99 E-value=0.0051 Score=34.10 Aligned_cols=48 Identities=19% Similarity=0.511 Sum_probs=33.4
Q ss_pred CccccccccccccCC-CeeeecCCCCccchHHhHHHHHh-----CCCCCcccCCC
Q 045986 95 FTSECVICLEEFVSG-DLFRILPFCKHVYHSHCIIRWFS-----DEFTCPICRSS 143 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~-~~vr~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 143 (148)
++..|++|...+.++ ..|.--. |...||..|+..-.. ..-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDL-CEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSS-SCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccC-CCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 346799999988643 4555454 899999999864321 23459999654
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=94.95 E-value=0.0056 Score=42.12 Aligned_cols=45 Identities=27% Similarity=0.584 Sum_probs=31.9
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRSS 143 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 143 (148)
+++.|.+|-.. |+.+. --.|...||..|+++-+...+ .||.|+..
T Consensus 6 ~~~~C~~C~~~---g~ll~-Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNG---GDLLC-CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCC---EEEEE-CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC---CceEE-cCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 45789999854 44333 333889999999988765533 49999864
No 85
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.67 E-value=0.019 Score=33.96 Aligned_cols=46 Identities=24% Similarity=0.621 Sum_probs=32.5
Q ss_pred CCccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCCC
Q 045986 94 KFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRSS 143 (148)
Q Consensus 94 ~~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 143 (148)
.++..|.+|... ++.+.--. |.-.||..|+++=|..-+ .||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~-C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQ-CEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTT-SSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCC-CCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345789999875 55444333 788899999987665423 39999754
No 86
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=94.64 E-value=0.004 Score=34.83 Aligned_cols=44 Identities=23% Similarity=0.576 Sum_probs=31.0
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRS 142 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~ 142 (148)
++..|.||.+. ++.+.--. |.-.||..|+.+=|...+ .||.|..
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~-C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDG-CPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSS-CCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CCEEEcCC-CChhhcccccCCCcCcCCCCCeECccccC
Confidence 45789999864 55554444 888999999987554422 3999965
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=94.60 E-value=0.011 Score=33.82 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=33.1
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhC----CCCCcccCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD----EFTCPICRSSI 144 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~ 144 (148)
+...|.||-.....+..|.--- |.-.||..|+..-... .-.||.|+..+
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~-C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDD-CDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSS-SSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCC-CCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3467999988764333444444 8899999999765433 23499997654
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=94.11 E-value=0.014 Score=35.98 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=26.2
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHh
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFS 132 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~ 132 (148)
+++.|.||.+.=+..+.+.=-. |+..||..|++..+.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~-C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTT-CGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSS-SCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCC-CCCCcChHHhCCccc
Confidence 4578999987732222344444 899999999988764
No 89
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=94.09 E-value=0.041 Score=34.93 Aligned_cols=47 Identities=26% Similarity=0.652 Sum_probs=31.4
Q ss_pred CCCccccccccccccCCCeeeecCCCCccchHHhHHHHH------hC-----CCCCcccCCC
Q 045986 93 KKFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWF------SD-----EFTCPICRSS 143 (148)
Q Consensus 93 ~~~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl------~~-----~~~CP~CR~~ 143 (148)
+.+++.|.||-+. ++.+---. |-..||.+||++=+ +. .=.|++|+..
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~-Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDF-CHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSS-SSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---CeeEecCC-CchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3445789999876 54433333 78999999999752 11 2249999653
No 90
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=94.06 E-value=0.096 Score=33.77 Aligned_cols=47 Identities=26% Similarity=0.690 Sum_probs=34.0
Q ss_pred CCCccccccccccccCCCeeeecCCCCccchHHhHHHHHh---------C--CCCCcccCCC
Q 045986 93 KKFTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFS---------D--EFTCPICRSS 143 (148)
Q Consensus 93 ~~~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~---------~--~~~CP~CR~~ 143 (148)
+.+++.|.+|-+. |+.+---. |-..||..||++=+. . .=.||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~-Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDF-CHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSS-SCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEeCCC-CCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3445789999886 66555444 889999999997653 1 2249999753
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=93.65 E-value=0.0078 Score=32.93 Aligned_cols=44 Identities=27% Similarity=0.646 Sum_probs=31.0
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRSS 143 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 143 (148)
+..|.+|... ++.+.--. |.-.||..|+++=+...+ .||.|+..
T Consensus 5 ~~~C~vC~~~---g~ll~Cd~-C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCDT-CSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCC---SSCEECSS-SSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCC---CcEEEcCC-CCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 4689999874 55555444 889999999997554422 39998653
No 92
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=93.42 E-value=0.036 Score=33.42 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=31.2
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhC---CCCCcccCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD---EFTCPICRS 142 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~ 142 (148)
..| ||-.....+..|.--. |.-.||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~-C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDK-CSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTT-TCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCC-CCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 567 8988776676666555 8899999998753222 224999974
No 93
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.28 E-value=0.11 Score=29.88 Aligned_cols=47 Identities=19% Similarity=0.514 Sum_probs=31.9
Q ss_pred cccccccccccc-CCCeeeecCCCCccchHHhHHHHHh-----CCCCCcccCCCC
Q 045986 96 TSECVICLEEFV-SGDLFRILPFCKHVYHSHCIIRWFS-----DEFTCPICRSSI 144 (148)
Q Consensus 96 ~~~C~ICl~~~~-~~~~vr~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~~ 144 (148)
...| ||-..+. .+..|.--- |...||..|+.---. ..-.||.|+..-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGL-CQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTT-TCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCC-CCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3567 9998875 445566555 899999999842211 234599998754
No 94
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=92.90 E-value=0.038 Score=31.30 Aligned_cols=48 Identities=19% Similarity=0.465 Sum_probs=30.2
Q ss_pred Cccccccccccc-cCCCeeeecCCCCccchHHhHHHHHhCC--CCCcccCC
Q 045986 95 FTSECVICLEEF-VSGDLFRILPFCKHVYHSHCIIRWFSDE--FTCPICRS 142 (148)
Q Consensus 95 ~~~~C~ICl~~~-~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~ 142 (148)
++..|.||.+.- .+++.+..=-.|.-.||..|+..=..-. =.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 346899998763 2233333333488999999998532111 13888864
No 95
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=92.77 E-value=0.021 Score=38.66 Aligned_cols=43 Identities=26% Similarity=0.678 Sum_probs=30.4
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRSS 143 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 143 (148)
+.|.+|... |+.+.--. |...||..|+++=+.... .||.|+..
T Consensus 3 ~~C~~C~~~---g~ll~Cd~-C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQ-CEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SSCCCCTT-TCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC---CceeECCC-CCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 579999865 55444444 788999999987554322 39999864
No 96
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=92.50 E-value=0.025 Score=33.47 Aligned_cols=50 Identities=18% Similarity=0.432 Sum_probs=31.2
Q ss_pred Cccccccccccc-cCCCeeeecCCCCccchHHhHHHHHhC--CCCCcccCCCC
Q 045986 95 FTSECVICLEEF-VSGDLFRILPFCKHVYHSHCIIRWFSD--EFTCPICRSSI 144 (148)
Q Consensus 95 ~~~~C~ICl~~~-~~~~~vr~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~ 144 (148)
++..|.||...- .+++.+..-..|.-.||..|+.+=+.. .=.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 457899998753 122233333348889999999863321 12399996543
No 97
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.40 E-value=0.014 Score=34.87 Aligned_cols=46 Identities=22% Similarity=0.475 Sum_probs=31.0
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRS 142 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~ 142 (148)
...|.||...-..+..+.--. |...||..|+.+=|...+ .||.|+.
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~-C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDG-CDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTT-TCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCccCCCcCCCCCEEEcCC-CCchhccccCCCCcccCCCCCcCCccCcC
Confidence 467999988754333444333 889999999985443322 3999964
No 98
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=92.39 E-value=0.12 Score=28.66 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=23.6
Q ss_pred ccccccccccccCCCeeeecC-CCCccchHHhH
Q 045986 96 TSECVICLEEFVSGDLFRILP-FCKHVYHSHCI 127 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp-~C~H~FH~~Ci 127 (148)
...|++|..++..++....-- .|.-.||..|+
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 367999999987665433332 48899999997
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=92.20 E-value=0.037 Score=34.16 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=29.4
Q ss_pred ccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCC
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRS 142 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~ 142 (148)
.|.||...=.+++.+..=-.|...||..|+++=|...+ .||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 68888864222233333333889999999987665422 4999975
No 100
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.02 E-value=0.065 Score=30.61 Aligned_cols=47 Identities=19% Similarity=0.472 Sum_probs=32.7
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHH---------HhCCCCCcccCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRW---------FSDEFTCPICRSSI 144 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~W---------l~~~~~CP~CR~~~ 144 (148)
...| ||-..+..+..|.--. |...||..|+.-- ....-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~-C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDR-CEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSS-SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCC-CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3567 8998876556666555 8999999998421 12456799997643
No 101
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.84 E-value=0.13 Score=42.88 Aligned_cols=50 Identities=16% Similarity=0.037 Sum_probs=41.7
Q ss_pred CCCccccccccccccCCCeeeecCCCC-ccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 93 KKFTSECVICLEEFVSGDLFRILPFCK-HVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 93 ~~~~~~C~ICl~~~~~~~~vr~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
.++...|||=++-+.++ .++| -| +.|-...|..||..+.+||+=|.++..
T Consensus 888 iP~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 34457899999888665 6788 76 689999999999999999999988764
No 102
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=91.74 E-value=0.14 Score=28.89 Aligned_cols=46 Identities=20% Similarity=0.552 Sum_probs=27.5
Q ss_pred CccccccccccccCCCeeeecC-CCC-ccchHHhHHHHHhCC----CCCcccCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILP-FCK-HVYHSHCIIRWFSDE----FTCPICRSSI 144 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp-~C~-H~FH~~Ci~~Wl~~~----~~CP~CR~~~ 144 (148)
+...| ||-.... ++.|.-=- .|. ..||..|+. |... -.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 8987642 44333111 133 689999997 4432 2399998653
No 103
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=91.40 E-value=0.21 Score=26.22 Aligned_cols=43 Identities=14% Similarity=0.327 Sum_probs=28.3
Q ss_pred ccccccccccCCC-eeeec-CCCCccchHHhHHHH----HhCCCCCcccC
Q 045986 98 ECVICLEEFVSGD-LFRIL-PFCKHVYHSHCIIRW----FSDEFTCPICR 141 (148)
Q Consensus 98 ~C~ICl~~~~~~~-~vr~l-p~C~H~FH~~Ci~~W----l~~~~~CP~CR 141 (148)
.|.+|...+.+++ .|.-- . |.--||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~-C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGG-CDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTT-TCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCC-CCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988886544 44433 4 8889999997421 12456699985
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=90.98 E-value=0.041 Score=30.85 Aligned_cols=45 Identities=24% Similarity=0.592 Sum_probs=30.8
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHh---CCCCCcccCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFS---DEFTCPICRS 142 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 142 (148)
...| ||-..+..+..|.--. |...||..|+..--. ..-.||.|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~-C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTT-TCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECCC-CCccccccccCcCcccCCCcEECCCCCC
Confidence 4678 9988776444666555 899999999864221 2335999975
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=90.79 E-value=0.033 Score=32.08 Aligned_cols=44 Identities=23% Similarity=0.513 Sum_probs=27.1
Q ss_pred ccccccccccCCCeeeecCCCCccchHHhHHHHHhCC-----CCCcccCC
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDE-----FTCPICRS 142 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~ 142 (148)
.|.||-..-..++.+. =-.|...||..|+++=|... =.||.|++
T Consensus 28 ~C~vC~~~~d~~~ll~-CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLM-CDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEE-CTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeE-eCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4666665533333333 22378999999999766542 25999986
No 106
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=90.04 E-value=0.19 Score=30.77 Aligned_cols=44 Identities=23% Similarity=0.522 Sum_probs=28.2
Q ss_pred CccccccccccccCCCeeeec-CCCCccchHHhHHHHHhCCC----CCcccCCC
Q 045986 95 FTSECVICLEEFVSGDLFRIL-PFCKHVYHSHCIIRWFSDEF----TCPICRSS 143 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~l-p~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 143 (148)
+++.|.+|.+. ++.+.-- +.|-..||..|+. |...+ .||-|+..
T Consensus 14 ~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 14 HEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 34689999843 5444332 0277899999998 54422 28877654
No 107
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.84 E-value=0.27 Score=29.13 Aligned_cols=47 Identities=19% Similarity=0.512 Sum_probs=27.8
Q ss_pred CccccccccccccCCCeeeecC-CCC-ccchHHhHHHHHhC----CCCCcccCCCCC
Q 045986 95 FTSECVICLEEFVSGDLFRILP-FCK-HVYHSHCIIRWFSD----EFTCPICRSSIY 145 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp-~C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~~~ 145 (148)
+...| ||-.... ++.|.--- .|. ..||..|+. |.. +-.||.|+..-.
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 34567 9987643 43333111 133 679999997 333 224999987543
No 108
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=89.83 E-value=0.034 Score=31.16 Aligned_cols=45 Identities=24% Similarity=0.569 Sum_probs=28.3
Q ss_pred cccccccccccCCCeeeec-CCCCccchHHhHHHHH---h-----CCCCCcccCC
Q 045986 97 SECVICLEEFVSGDLFRIL-PFCKHVYHSHCIIRWF---S-----DEFTCPICRS 142 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~l-p~C~H~FH~~Ci~~Wl---~-----~~~~CP~CR~ 142 (148)
..| ||-.....+..|.-- +.|...||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 457 797766666665542 2388899999983210 0 1245999974
No 109
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.65 E-value=0.064 Score=30.84 Aligned_cols=45 Identities=22% Similarity=0.507 Sum_probs=29.5
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhC--CC---CCcccCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD--EF---TCPICRS 142 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~--~~---~CP~CR~ 142 (148)
..|.||...-..++.+.--. |...||..|+++=|.. .. .||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~-C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDE-CNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSS-SCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCC-CCccccccccCCCccCCCCCCCcCCcCccC
Confidence 36889986533344443333 8899999999864433 22 4999975
No 110
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.54 E-value=0.15 Score=29.27 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=31.5
Q ss_pred ccccccccccccCCCeeeec--CCCCccchHHhHHHHH---------hCCCCCcccCCCC
Q 045986 96 TSECVICLEEFVSGDLFRIL--PFCKHVYHSHCIIRWF---------SDEFTCPICRSSI 144 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~l--p~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~~ 144 (148)
...| ||-.....+..|.-- - |...||..|+.-=- ..+-.||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~-C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPR-CHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTT-TCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCcc-CCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4568 798875556555544 4 88999999985321 1244599997643
No 111
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=89.40 E-value=0.66 Score=28.43 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=22.3
Q ss_pred cccccccccc------cCCCeeeecCCCCccchHHhHHH
Q 045986 97 SECVICLEEF------VSGDLFRILPFCKHVYHSHCIIR 129 (148)
Q Consensus 97 ~~C~ICl~~~------~~~~~vr~lp~C~H~FH~~Ci~~ 129 (148)
..|.+|+..= ..++.+.=-. |+..||..|++.
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~-C~~~~H~~Cl~~ 43 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCAD-CGNSGHPSCLKF 43 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTT-TCCEECHHHHTC
T ss_pred ccccccCCchhhCcCCCchhceEhhh-cCCCCCCchhcC
Confidence 5799998752 2224444444 999999999963
No 112
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=88.90 E-value=0.085 Score=29.72 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=27.7
Q ss_pred ccccccccccCCCeeeecCCCCccchHHhHHHHHhC--CC---CCcccCCC
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD--EF---TCPICRSS 143 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~--~~---~CP~CR~~ 143 (148)
.|.||...-..++.+. =-.|...||..|+++=|.. .. .||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~-CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLM-CDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEE-CTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEE-cCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 4667775422333333 3338899999999864443 22 49999753
No 113
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=88.11 E-value=0.22 Score=27.37 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=32.2
Q ss_pred CccccccccccccC-CCeeeecCCCCccchHHhHHHHHh-------CCCCCcccCCCC
Q 045986 95 FTSECVICLEEFVS-GDLFRILPFCKHVYHSHCIIRWFS-------DEFTCPICRSSI 144 (148)
Q Consensus 95 ~~~~C~ICl~~~~~-~~~vr~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~~ 144 (148)
++..|.||...... +..+..=..|.-.||..|+.+=+. ..=.||.|+...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 34789999987533 223333334899999999886432 122499997543
No 114
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=87.21 E-value=0.12 Score=28.07 Aligned_cols=43 Identities=21% Similarity=0.613 Sum_probs=25.7
Q ss_pred ccccccccccccCCCeeeecC-CCC-ccchHHhHHHHHhCC----CCCcccCC
Q 045986 96 TSECVICLEEFVSGDLFRILP-FCK-HVYHSHCIIRWFSDE----FTCPICRS 142 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp-~C~-H~FH~~Ci~~Wl~~~----~~CP~CR~ 142 (148)
...| ||-... .++.|.--. +|. ..||..|+. |... -.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3567 898764 344333111 144 689999998 4432 24999965
No 115
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=87.14 E-value=0.3 Score=29.69 Aligned_cols=48 Identities=19% Similarity=0.404 Sum_probs=30.9
Q ss_pred cccccccccccCCCe-eeecCCCCccchHHhHHHH------H----hCCCCCcccCCCC
Q 045986 97 SECVICLEEFVSGDL-FRILPFCKHVYHSHCIIRW------F----SDEFTCPICRSSI 144 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~-vr~lp~C~H~FH~~Ci~~W------l----~~~~~CP~CR~~~ 144 (148)
..|.||...|.++.. +.--..|.-.||.+|+.-= + ..+-.||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 469999999866543 3322138889999998421 1 0233599997643
No 116
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=87.11 E-value=0.12 Score=34.17 Aligned_cols=45 Identities=29% Similarity=0.576 Sum_probs=30.2
Q ss_pred ccccccccccccCC-CeeeecCCCCccchHHhHHHHH-----hCCCCCcccCC
Q 045986 96 TSECVICLEEFVSG-DLFRILPFCKHVYHSHCIIRWF-----SDEFTCPICRS 142 (148)
Q Consensus 96 ~~~C~ICl~~~~~~-~~vr~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~ 142 (148)
...| +|...+.++ ..+.--. |.-.||..|+..-- ...-.||.|+.
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~-C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDR-CQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTT-TCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCC-CCchhChhhcCCchhhccCccCeecCCCcc
Confidence 4679 999887543 3455444 88999999995321 12445999975
No 117
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=86.76 E-value=0.099 Score=32.34 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=23.0
Q ss_pred cccccccccccC-------CCeeeecCCCCccchHHhHHHH
Q 045986 97 SECVICLEEFVS-------GDLFRILPFCKHVYHSHCIIRW 130 (148)
Q Consensus 97 ~~C~ICl~~~~~-------~~~vr~lp~C~H~FH~~Ci~~W 130 (148)
+.|.+|+..-.. ++.+.-.. |+..||..|++..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~-C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCAD-CGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSS-SCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCC-CCCccchhhCCCh
Confidence 469999876421 23444444 8999999999765
No 118
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=86.74 E-value=0.12 Score=28.14 Aligned_cols=43 Identities=21% Similarity=0.627 Sum_probs=25.3
Q ss_pred ccccccccccccCCCeeeecC-CCC-ccchHHhHHHHHhCC----CCCcccCC
Q 045986 96 TSECVICLEEFVSGDLFRILP-FCK-HVYHSHCIIRWFSDE----FTCPICRS 142 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp-~C~-H~FH~~Ci~~Wl~~~----~~CP~CR~ 142 (148)
...| ||-... .++.|.--. .|. ..||..|+. |... -.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3567 898764 243333111 133 679999998 4442 23999964
No 119
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=84.82 E-value=0.18 Score=27.59 Aligned_cols=43 Identities=23% Similarity=0.675 Sum_probs=25.6
Q ss_pred ccccccccccccCCCeeeecC-CCC-ccchHHhHHHHHhC----CCCCcccCC
Q 045986 96 TSECVICLEEFVSGDLFRILP-FCK-HVYHSHCIIRWFSD----EFTCPICRS 142 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp-~C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 142 (148)
...| ||-... .++.|.--- .|. ..||..|+. |.. +-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3567 898763 344333211 133 789999997 333 224999965
No 120
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=84.55 E-value=0.12 Score=31.76 Aligned_cols=44 Identities=20% Similarity=0.465 Sum_probs=28.2
Q ss_pred ccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCC
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRS 142 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~ 142 (148)
.|.+|-..-.+...+.--. |...||..|+++=|...+ .||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~-C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDT-CDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSS-SCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCC-CCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 5777876533333344333 889999999987554322 3888865
No 121
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=83.76 E-value=0.21 Score=34.68 Aligned_cols=45 Identities=22% Similarity=0.444 Sum_probs=25.0
Q ss_pred ccccccccccCCCeeeecCCCCccchHHhHHHHHhC--CC---CCcccCCC
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD--EF---TCPICRSS 143 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~--~~---~CP~CR~~ 143 (148)
.|.+|...=..++.+.-- .|...||..|+++=|.. .. .||.|+..
T Consensus 176 ~C~vC~~~~~~~~lL~CD-~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECS-SSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcC-CCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 578887643233333323 38899999999965443 22 39999753
No 122
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=83.65 E-value=0.14 Score=26.97 Aligned_cols=42 Identities=26% Similarity=0.580 Sum_probs=27.2
Q ss_pred cccccccCCCeeeecCCCCccchHHhHHHHHh---CCCCCcccCCC
Q 045986 101 ICLEEFVSGDLFRILPFCKHVYHSHCIIRWFS---DEFTCPICRSS 143 (148)
Q Consensus 101 ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~ 143 (148)
||-.....+..|.--. |+--||..|+.-=-. ..-.||.|+.+
T Consensus 8 ~C~~~~~~~~MI~Cd~-C~~W~H~~Cvgi~~~~~~~~~~C~~C~~S 52 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRDS 52 (52)
T ss_dssp TTCCBCTTCCEEECTT-TCCEEETTTTTCCGGGCCSSCCCHHHHTC
T ss_pred EeCCcCCCCCEEEcCC-CCccccccccCCCcccCCCcEECcCCCCc
Confidence 6766655445566555 889999999853221 23459999753
No 123
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=83.03 E-value=1.2 Score=25.56 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=29.8
Q ss_pred CccccccccccccCCCeeeecCCCCccchHHhHHHHHhC
Q 045986 95 FTSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD 133 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~ 133 (148)
....|.+|.+.+++.--|.--..=.|-|+-.|-+..+++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 346899999999888766622212799999999999876
No 124
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=82.91 E-value=0.21 Score=30.35 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=14.1
Q ss_pred CCccchHHhHHHHHhCCCCCcccCCC
Q 045986 118 CKHVYHSHCIIRWFSDEFTCPICRSS 143 (148)
Q Consensus 118 C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 143 (148)
||+.| ..=+.....||.|++.
T Consensus 73 CG~~F-----~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 73 CGFVF-----KAEINIPSRCPKCKSE 93 (105)
T ss_dssp TCCBC-----CCCSSCCSSCSSSCCC
T ss_pred CcCee-----cccCCCCCCCcCCCCC
Confidence 89999 1112345679999874
No 125
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.74 E-value=0.17 Score=28.48 Aligned_cols=47 Identities=21% Similarity=0.366 Sum_probs=31.7
Q ss_pred ccccccccccccCCC-eeeecCCCCccchHHhHHHHH----hCCCCCcccCCCC
Q 045986 96 TSECVICLEEFVSGD-LFRILPFCKHVYHSHCIIRWF----SDEFTCPICRSSI 144 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~-~vr~lp~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~~ 144 (148)
...| ||-..+..++ .|.--. |...||..|+.--- ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~-C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDG-CGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSS-SCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred ceEe-eCCCccCCCCcEEECCC-CCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 3568 7988776654 555555 89999999986431 1234599997643
No 126
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=82.36 E-value=0.8 Score=24.78 Aligned_cols=42 Identities=21% Similarity=0.631 Sum_probs=28.7
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHH-hCCCCCccc
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWF-SDEFTCPIC 140 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl-~~~~~CP~C 140 (148)
..|--|...|.+.... .=|.|++.|+.+| |..+ +.-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y-~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVY-VCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEE-CCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccE-ECCccCcCcccch-hHHHHhhccCCcCC
Confidence 3699999998543223 3455999999999 3333 234569988
No 127
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=81.33 E-value=1.1 Score=33.35 Aligned_cols=48 Identities=21% Similarity=0.542 Sum_probs=30.9
Q ss_pred cccccccccccCCCeeeecCCCCcc--chHHhHHHHHhC--CCCCcccCCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHV--YHSHCIIRWFSD--EFTCPICRSSIYLD 147 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~--FH~~Ci~~Wl~~--~~~CP~CR~~~~~~ 147 (148)
..|++=...+. ..+|-.. |.|. |-.+=+-..-.+ .-.||+|...+.++
T Consensus 250 L~CPlS~~ri~--~PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCS--SEEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCcccccc--ccCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 56887777653 4578777 9998 654433333222 33599999887654
No 128
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=81.07 E-value=1.2 Score=33.12 Aligned_cols=48 Identities=15% Similarity=0.452 Sum_probs=31.4
Q ss_pred cccccccccccCCCeeeecCCCCcc--chHHhHHHHHhCC--CCCcccCCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHV--YHSHCIIRWFSDE--FTCPICRSSIYLD 147 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~--FH~~Ci~~Wl~~~--~~CP~CR~~~~~~ 147 (148)
..|++=...+. ..+|-.. |.|. |-..=+-....+. -.||+|...+.++
T Consensus 216 L~CPlS~~ri~--~P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCS--SEEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceec--cCCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 46887776653 4577777 9998 6644433333333 3499999987654
No 129
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=79.39 E-value=1.6 Score=25.15 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=24.2
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHH
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRW 130 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~W 130 (148)
...|.+|-..|.--..--.-..||++|+.+|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 46899999999654321222338999999997654
No 130
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=79.10 E-value=1.5 Score=25.23 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=23.9
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHH
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRW 130 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~W 130 (148)
...|.+|-..|.-...--.-..||.+|+.+|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 35799999998643211222339999999997643
No 131
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=78.78 E-value=2.1 Score=25.01 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=23.1
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHH
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIR 129 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~ 129 (148)
...|.+|-..|.--..--.-..||++|+..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3689999999865422122233899999998654
No 132
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=78.71 E-value=0.37 Score=21.96 Aligned_cols=11 Identities=36% Similarity=0.935 Sum_probs=7.9
Q ss_pred CCCcccCCCCC
Q 045986 135 FTCPICRSSIY 145 (148)
Q Consensus 135 ~~CP~CR~~~~ 145 (148)
.+||+|+...+
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 45888887654
No 133
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=78.64 E-value=0.19 Score=31.04 Aligned_cols=45 Identities=20% Similarity=0.479 Sum_probs=29.7
Q ss_pred ccccccccccCCCeeeecCCCCccchHHhHHHHHhCCC----CCcccCCC
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEF----TCPICRSS 143 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 143 (148)
.|.||...-..++.+.--. |...||..|+++=|...+ .||.|+..
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~-C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDD-CDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTTTEEECSS-SCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCCceEEcCC-CCccccccccCCCccCCCCCCeECccccch
Confidence 5888877644444444344 889999999986444322 39988653
No 134
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=78.02 E-value=1.6 Score=25.65 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=24.3
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHH
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRW 130 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~W 130 (148)
...|.+|...|.--..--.-..||++|+..|...+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 35799999998643222223349999999997654
No 135
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=77.84 E-value=0.24 Score=23.71 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=11.2
Q ss_pred ccccccccccccCCC
Q 045986 96 TSECVICLEEFVSGD 110 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~ 110 (148)
...||+|+.++...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 467999998876654
No 136
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=77.43 E-value=1.5 Score=27.37 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=23.4
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHH
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRW 130 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~W 130 (148)
..|.+|-..|.-...--.-..||++|+..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 5799999998643211122239999999996543
No 137
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.06 E-value=2.4 Score=23.55 Aligned_cols=39 Identities=18% Similarity=0.468 Sum_probs=29.0
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..|+.|-..+..++.+.. -+..||.+|. +|..|+.+|..
T Consensus 10 ~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCC
Confidence 579999999887776543 5788998874 48888877653
No 138
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.17 E-value=2 Score=24.80 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=22.7
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHH
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIR 129 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~ 129 (148)
...|.+|-..|.--..--.-..||.+|+..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3689999999854321112223899999999654
No 139
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=75.43 E-value=2.1 Score=23.78 Aligned_cols=41 Identities=15% Similarity=0.034 Sum_probs=18.9
Q ss_pred cccccccccccCCCeeeecCCCCccchH-HhHHHHHhCCCCCcccCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHS-HCIIRWFSDEFTCPICRS 142 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~-~Ci~~Wl~~~~~CP~CR~ 142 (148)
..|..|-..+..+.-. .. =|..|+. .|...- -...|-.|..
T Consensus 28 F~C~~C~~~L~~~~~~--~~-~g~~yC~~~cy~~~--f~~~C~~C~~ 69 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHA--EH-EGKPYCNHPCYSAM--FGPKGFGRGG 69 (76)
T ss_dssp CBCTTTCCBCCTTTEE--EE-TTEEEETTTHHHHH--SSCCCSSCCC
T ss_pred CCccccCccCCCCceE--Cc-CCeEeeCHHHHHHH--hCccCCCcCC
Confidence 4566665555443211 11 3455555 355432 2344555543
No 140
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.35 E-value=1.6 Score=24.40 Aligned_cols=41 Identities=22% Similarity=0.572 Sum_probs=24.5
Q ss_pred cccccccccccCCCeeeecCCCC---ccchHHhHHHHHhC----CCCCcccCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCK---HVYHSHCIIRWFSD----EFTCPICRS 142 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~---H~FH~~Ci~~Wl~~----~~~CP~CR~ 142 (148)
..| ||-... .++.|.--- |. ..||.+|+.. .. .-.||.|+.
T Consensus 7 ~yC-~C~~~~-~g~MI~CD~-cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 7 GYC-ICNQVS-YGEMVGCDN-QDCPIEWFHYGCVGL--TEAPKGKWYCPQCTA 54 (70)
T ss_dssp CCS-TTSCCC-CSSEECCSC-TTCSCCCEEHHHHTC--SSCCSSCCCCHHHHH
T ss_pred eEE-EcCCCC-CCCEeEeCC-CCCCccCCccccccc--CcCCCCCEECCCCCc
Confidence 456 587652 345554333 42 6899999972 22 224999864
No 141
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.80 E-value=4.8 Score=22.65 Aligned_cols=38 Identities=26% Similarity=0.610 Sum_probs=28.3
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+..++.+.. -+..||.+|+ +|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 579999998877766654 4678998873 5888877664
No 142
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.69 E-value=4.4 Score=21.99 Aligned_cols=40 Identities=25% Similarity=0.497 Sum_probs=24.9
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..|+-|-..+..++.+. .. -+..||.+|. +|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKL-EY-GGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEE-CS-TTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccEE-EE-CccccCcccC--------eECCCCCcCCC
Confidence 46888888777543322 22 5677887773 47777766643
No 143
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=73.41 E-value=2 Score=23.37 Aligned_cols=39 Identities=21% Similarity=0.554 Sum_probs=28.2
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+..++.+.. . -+..||.+|. +|-.|..++.
T Consensus 12 ~~C~~C~~~i~~~e~~~~-~-~~~~~H~~CF--------~C~~C~~~L~ 50 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVN-S-NGELYHEQCF--------VCAQCFQQFP 50 (72)
T ss_dssp CBCTTTCCBCCTTCEEEE-E-TTEEEETTTS--------SCTTTCCCCG
T ss_pred ccchhcCccccCCceEEE-e-CcCeeCcCCC--------cccCCCCCCC
Confidence 579999999887665432 2 5778998885 5777777664
No 144
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=73.38 E-value=2.1 Score=27.19 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=22.9
Q ss_pred Ccccccccccccc-CCCeeeecCCCCccchHHhHH
Q 045986 95 FTSECVICLEEFV-SGDLFRILPFCKHVYHSHCII 128 (148)
Q Consensus 95 ~~~~C~ICl~~~~-~~~~vr~lp~C~H~FH~~Ci~ 128 (148)
++..|++|...|. ....=++=..|.|.++..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 3478999999993 222223333489999998843
No 145
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.73 E-value=3.4 Score=22.82 Aligned_cols=39 Identities=21% Similarity=0.532 Sum_probs=25.9
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+..++.+... -+..||.+|. +|-.|+.++.
T Consensus 12 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 50 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFP 50 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCG
T ss_pred CCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCC
Confidence 5799998888754443211 5678888774 4777776664
No 146
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=72.44 E-value=0.61 Score=25.93 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=14.9
Q ss_pred HHHHHhCCCCCcccCCCCCC
Q 045986 127 IIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 127 i~~Wl~~~~~CP~CR~~~~~ 146 (148)
+++||..--.||+|+.++..
T Consensus 3 md~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEE
T ss_pred CCHHHHHHhCCCCCCCcCeE
Confidence 35677777789999998753
No 147
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=72.38 E-value=2.8 Score=23.44 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=22.2
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHH
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIR 129 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~ 129 (148)
..|.+|-..|.--..--.-..||++|+.+|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999864321112223899999999643
No 148
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=71.52 E-value=0.78 Score=27.07 Aligned_cols=42 Identities=17% Similarity=0.452 Sum_probs=25.1
Q ss_pred ccccccccccccCCCeeeecCCCC---ccchHHhHHHHHhC----CCCCcc-cCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCK---HVYHSHCIIRWFSD----EFTCPI-CRS 142 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~---H~FH~~Ci~~Wl~~----~~~CP~-CR~ 142 (148)
...| ||-... .++.|.--- |. ..||..||. |.. +-.||. |+.
T Consensus 26 ~~yC-iC~~~~-~g~MI~CD~-c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVS-YGPMVACDN-PACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCC-SSSEECCCS-SSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CcEE-EeCCCC-CCCEEEecC-CCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 3567 898753 244443222 44 689999996 332 224999 863
No 149
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.82 E-value=6.5 Score=22.15 Aligned_cols=38 Identities=21% Similarity=0.697 Sum_probs=27.0
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+..++.+.. -+..||.+|. +|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (82)
T 2co8_A 16 DLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLW 53 (82)
T ss_dssp CBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCC
T ss_pred CCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcC
Confidence 579999988876665542 5778998884 4666766554
No 150
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=70.78 E-value=13 Score=21.71 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=33.2
Q ss_pred ccccccccccccCCC--eeeec-CCCCccchHHhHHHHHhC-CCCCcccCCCCC
Q 045986 96 TSECVICLEEFVSGD--LFRIL-PFCKHVYHSHCIIRWFSD-EFTCPICRSSIY 145 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~--~vr~l-p~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 145 (148)
...|.||=++....+ ++.+. -.|+--.+..|.+-=.+. +..||-|++...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 368999988864332 12221 115566899998765544 778999998764
No 151
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=70.31 E-value=4.1 Score=26.63 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=24.3
Q ss_pred CccccccccccccCCCeeeec-CCCCccchHHhHHHHHhC
Q 045986 95 FTSECVICLEEFVSGDLFRIL-PFCKHVYHSHCIIRWFSD 133 (148)
Q Consensus 95 ~~~~C~ICl~~~~~~~~vr~l-p~C~H~FH~~Ci~~Wl~~ 133 (148)
.+..|.||-+. ++.+.-- +.|...|+.+||+.++..
T Consensus 78 ~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 35779999764 3322222 137789999999999844
No 152
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=70.02 E-value=3.7 Score=22.60 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=24.4
Q ss_pred ccccccccccccCCCeeeecCCC-CccchHHhHHHH
Q 045986 96 TSECVICLEEFVSGDLFRILPFC-KHVYHSHCIIRW 130 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C-~H~FH~~Ci~~W 130 (148)
..-|.||.++ ..+|-+. | +-+|+..|..+-
T Consensus 8 ~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 4679999887 5688888 8 889999998764
No 153
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=69.55 E-value=9.1 Score=19.26 Aligned_cols=8 Identities=13% Similarity=0.086 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 045986 41 EICIWARD 48 (148)
Q Consensus 41 ~~~~~~~~ 48 (148)
.+..++|+
T Consensus 30 ~~~~~~RR 37 (44)
T 2jwa_A 30 VFGILIKR 37 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHhheeh
Confidence 33344443
No 154
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.07 E-value=6.8 Score=21.23 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=12.0
Q ss_pred ccccccccccCCCeeeecCCCCccchHHh
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHC 126 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~C 126 (148)
.|+-|-..+...+.+. .. -+..||.+|
T Consensus 7 ~C~~C~~~I~~~~~~~-~a-~~~~~H~~C 33 (72)
T 1x61_A 7 GCGGCGEDVVGDGAGV-VA-LDRVFHVGC 33 (72)
T ss_dssp CCSSSCSCCCSSSCCE-EC-SSSEECTTT
T ss_pred CCccCCCccCCCceEE-EE-CCCeEcccC
Confidence 4666655554322111 11 345556555
No 155
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.00 E-value=4.7 Score=21.89 Aligned_cols=39 Identities=23% Similarity=0.491 Sum_probs=24.9
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+.|-..+..++.+... -+..||.+|. +|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccC
Confidence 4688888887765433221 4677887764 4777776654
No 156
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.00 E-value=1.2 Score=25.99 Aligned_cols=47 Identities=26% Similarity=0.601 Sum_probs=30.7
Q ss_pred ccccccccccccC-CCeeeecCCCCccchHHhHHHHHhC--------CCCCcccCC
Q 045986 96 TSECVICLEEFVS-GDLFRILPFCKHVYHSHCIIRWFSD--------EFTCPICRS 142 (148)
Q Consensus 96 ~~~C~ICl~~~~~-~~~vr~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~ 142 (148)
+..|.||...-.. +..+..=-.|...||..|+++=|.. .=.||.|+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 3679999976432 2233333348999999999875531 224999864
No 157
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.33 E-value=4.8 Score=21.92 Aligned_cols=39 Identities=26% Similarity=0.606 Sum_probs=24.3
Q ss_pred cccccccccccC--CCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVS--GDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~--~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+.. ++.+ +.. -+..||.+|. +|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a-~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISF-EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EEC-SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcce-EEE-CCcccCcccC--------EeccCCCcCC
Confidence 468888887764 2222 222 5778887774 4777776654
No 158
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=67.21 E-value=1.9 Score=19.78 Aligned_cols=28 Identities=14% Similarity=0.405 Sum_probs=19.5
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhH
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCI 127 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci 127 (148)
+.|+.|-...-..|.+. - -|..||+.|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccCC
Confidence 46999987765554443 2 5788999883
No 159
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=67.10 E-value=1.4 Score=24.87 Aligned_cols=38 Identities=18% Similarity=0.545 Sum_probs=24.8
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+.|-..+..++.++. -+..||.+|. +|-.|+.+|.
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEEC
T ss_pred CcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCC
Confidence 468888888766665433 5677887763 3666666553
No 160
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=66.82 E-value=0.63 Score=29.02 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=27.1
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICR 141 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 141 (148)
..|..|-..|..-..--.-..||.+|+..|..........|-.|.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 579999999864321122234999999999765544344465553
No 161
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.26 E-value=5.9 Score=21.40 Aligned_cols=37 Identities=24% Similarity=0.726 Sum_probs=22.4
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+. ++.+.. -+..||.+|. +|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~-~~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFII-GRVIKA---MNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCC-SCCEEE---TTEEECTTTS--------BCSSSCCBCS
T ss_pred CcCccCCCEec-ceEEEE---CcccccccCC--------EeCCCCCcCC
Confidence 46888877765 233322 4667777764 4667766654
No 162
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.19 E-value=7.2 Score=21.76 Aligned_cols=40 Identities=30% Similarity=0.599 Sum_probs=27.3
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..|+.|-..+..++.+. .. -+..||.+|. +|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EY-KGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-EC-SSCEEETTTC--------CCSSSCCCCTT
T ss_pred CcCccCCcccccCceEE-EE-CccccccccC--------chhhCCCccCC
Confidence 57999988887655432 22 5778888774 47778777643
No 163
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=65.38 E-value=3.1 Score=28.48 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=23.6
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHH
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRW 130 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~W 130 (148)
+..|.+|-..|.--..--.-..||++|+..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 36899999998643211122339999999996543
No 164
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=65.14 E-value=4.2 Score=26.45 Aligned_cols=39 Identities=26% Similarity=0.714 Sum_probs=21.0
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+.|-..+..++.+.. . -++.||.+|. +|-.|+..|.
T Consensus 66 ~~C~~C~~~I~~~~~v~~-a-~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRR-A-QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEEE-E-TTEEEEGGGC--------BCTTTCCBCC
T ss_pred ccccccccccCCCcEEEE-c-CCceEeeCCC--------cCCCCCCCCC
Confidence 356666655554443321 1 4566776664 4666666553
No 165
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=64.62 E-value=0.38 Score=25.76 Aligned_cols=17 Identities=18% Similarity=0.587 Sum_probs=10.6
Q ss_pred HHHhCCCCCcccCCCCC
Q 045986 129 RWFSDEFTCPICRSSIY 145 (148)
Q Consensus 129 ~Wl~~~~~CP~CR~~~~ 145 (148)
+||..--.||.|+.++.
T Consensus 5 ~~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 5 AGLLEILACPACHAPLE 21 (56)
T ss_dssp CSCTTSCCCSSSCSCEE
T ss_pred HHHHhheeCCCCCCcce
Confidence 44444556888887653
No 166
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.37 E-value=12 Score=21.37 Aligned_cols=38 Identities=21% Similarity=0.618 Sum_probs=24.6
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+...+.++ . -+..||.+|. +|-.|..+|.
T Consensus 16 ~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~ 53 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLS 53 (91)
T ss_dssp CBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCC
T ss_pred CcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCC
Confidence 56888888877665543 2 5677887774 3666655543
No 167
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.96 E-value=0.54 Score=25.51 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=26.3
Q ss_pred cccccccccccCCCeeeecC----CCCccchHHhHHHHHhC
Q 045986 97 SECVICLEEFVSGDLFRILP----FCKHVYHSHCIIRWFSD 133 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp----~C~H~FH~~Ci~~Wl~~ 133 (148)
..||-|...++..+....+. .|+|.|+..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 46888888887766444333 16788999999988643
No 168
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.15 E-value=9.2 Score=21.31 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=24.0
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+. ++.+ ..-+..||.+|. +|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~-~~~v---~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 16 YICQKCHAIID-EQPL---IFKNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CBCTTTCCBCC-SCCC---CCSSSCCCTTTS--------BCSSSCCBCC
T ss_pred CCCccCCCEec-ceEE---EECcceeCCCCC--------EeCCCCCccC
Confidence 57888888776 3322 225677887763 5777777664
No 169
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.77 E-value=3.8 Score=28.28 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=24.1
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHH
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRW 130 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~W 130 (148)
+..|.+|-..|.--..--.-..||++|+..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 36899999998643221222339999999997644
No 170
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=61.98 E-value=7.2 Score=29.27 Aligned_cols=44 Identities=25% Similarity=0.570 Sum_probs=29.1
Q ss_pred ccccccccccccCCCeeeec-CCCCccchHHhHHHHHhC----------CCCCcccCC
Q 045986 96 TSECVICLEEFVSGDLFRIL-PFCKHVYHSHCIIRWFSD----------EFTCPICRS 142 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~l-p~C~H~FH~~Ci~~Wl~~----------~~~CP~CR~ 142 (148)
+..|.+|-+. ++.+.-- +.|...|+.+||+..+.. +=.|=+|.-
T Consensus 93 ~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 93 QSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp BCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 4678888764 4333322 138899999999999832 224877753
No 171
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=61.13 E-value=6 Score=21.07 Aligned_cols=38 Identities=16% Similarity=0.386 Sum_probs=25.9
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..|+-|-..+. ++.+ .. -+..||.+|. +|-.|+.++..
T Consensus 6 ~~C~~C~~~I~-~~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV--NA-MGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCEE--CC-TTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ceEE--EE-CccccccCcC--------EECCCCCCCCC
Confidence 47999988877 4332 23 5778888773 47888777653
No 172
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.06 E-value=9.6 Score=20.94 Aligned_cols=39 Identities=33% Similarity=0.684 Sum_probs=25.0
Q ss_pred cccccccccccC--CCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVS--GDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~--~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+.. ++.+ +.. -+..||.+|. +|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a-~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICF-QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEE-TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCcee-EEE-CCcccCcccC--------ChhhCCCcCC
Confidence 468899888774 2222 222 5778898884 4777766654
No 173
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=60.95 E-value=7.3 Score=25.77 Aligned_cols=38 Identities=32% Similarity=0.760 Sum_probs=22.4
Q ss_pred ccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
.|+.|-..+...+.+.. . -++.||.+| .+|-.|..+|.
T Consensus 71 ~C~~C~~~I~~~e~~i~-a-~~~~~H~~C--------F~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMR-A-QGNVYHLKC--------FTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEE-E-TTEEECGGG--------CBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEE-c-CCCEEeCCC--------CeECCCCCCCC
Confidence 47777776655443221 1 467777777 35666666653
No 174
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.89 E-value=7.1 Score=21.73 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=24.9
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSI 144 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 144 (148)
..|+-|-..+.. +.+ .. -+..||.+|. +|-.|+.+|
T Consensus 16 ~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 16 PMCDKCGTGIVG-VFV--KL-RDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCSSSCCCCCS-SCE--EC-SSCEECTTTT--------SCSSSCCCH
T ss_pred CccccCCCCccC-cEE--EE-CcceeCcCcC--------eeCCCCCCC
Confidence 579999888764 322 22 6788998885 477776654
No 175
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=60.27 E-value=14 Score=21.03 Aligned_cols=39 Identities=18% Similarity=0.449 Sum_probs=27.1
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
...|+-|-..+.. +.++ . -+..||.+|. +|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVK--A-RDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CCEE--S-SSCEECTTTC--------CCSSSCCCTTT
T ss_pred CCCcccCCCEecc-cEEE--E-CCceECccCC--------EecCCCCCCCC
Confidence 3679999988764 3222 2 6788998884 47888777653
No 176
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=59.17 E-value=0.92 Score=27.82 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=25.5
Q ss_pred ccccccccccCCCeeeecCCCCccchHHhHHHHHhC--------CCCCcccCCC
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD--------EFTCPICRSS 143 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~ 143 (148)
.|..|..+...++.+..--.|...||..|...-... .-.||.|+..
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 344444444434434433449999999998643211 1239999753
No 177
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=58.79 E-value=4 Score=24.40 Aligned_cols=11 Identities=18% Similarity=1.111 Sum_probs=9.8
Q ss_pred chHHhHHHHHh
Q 045986 122 YHSHCIIRWFS 132 (148)
Q Consensus 122 FH~~Ci~~Wl~ 132 (148)
||..|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 178
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=58.68 E-value=4.1 Score=24.34 Aligned_cols=11 Identities=18% Similarity=1.084 Sum_probs=9.9
Q ss_pred chHHhHHHHHh
Q 045986 122 YHSHCIIRWFS 132 (148)
Q Consensus 122 FH~~Ci~~Wl~ 132 (148)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 179
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=58.16 E-value=6.9 Score=25.35 Aligned_cols=32 Identities=19% Similarity=0.439 Sum_probs=22.9
Q ss_pred Ccccccccccccc--CCCeeeecCCCCccchHHhH
Q 045986 95 FTSECVICLEEFV--SGDLFRILPFCKHVYHSHCI 127 (148)
Q Consensus 95 ~~~~C~ICl~~~~--~~~~vr~lp~C~H~FH~~Ci 127 (148)
++..|++|...|. .+....-.- |+|.++..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~-C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLE-CSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTT-TCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCC-CCchhhcccc
Confidence 4578999999863 333333333 9999999996
No 180
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=58.15 E-value=9.2 Score=19.21 Aligned_cols=8 Identities=0% Similarity=-0.093 Sum_probs=3.2
Q ss_pred hhHHHHHH
Q 045986 22 VLTYTLTI 29 (148)
Q Consensus 22 ~i~~~i~i 29 (148)
.|..+++.
T Consensus 12 ~IA~gVVg 19 (44)
T 2ks1_B 12 SIATGMVG 19 (44)
T ss_dssp SSTHHHHH
T ss_pred eEEeehhH
Confidence 34444443
No 181
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=56.14 E-value=8.2 Score=23.71 Aligned_cols=37 Identities=24% Similarity=0.603 Sum_probs=19.3
Q ss_pred ccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCC
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSI 144 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 144 (148)
.|+.|-..+..++.+.. . -+..||.+| -+|-.|..+|
T Consensus 68 ~C~~C~~~I~~~e~~~~-a-~~~~~H~~C--------F~C~~C~~~L 104 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMR-V-KDKVYHLEC--------FKCAACQKHF 104 (131)
T ss_dssp ECTTTCCEECTTSEEEE-E-TTEEEEGGG--------CBCTTTCCBC
T ss_pred ChhhcCCccCccceeEe-e-CCceECccC--------cccCCCCCCC
Confidence 46666665544332221 1 456666665 2466666655
No 182
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=55.96 E-value=2.4 Score=18.64 Aligned_cols=9 Identities=33% Similarity=1.350 Sum_probs=5.3
Q ss_pred CCcccCCCC
Q 045986 136 TCPICRSSI 144 (148)
Q Consensus 136 ~CP~CR~~~ 144 (148)
.||+|.+.+
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 377776543
No 183
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=55.37 E-value=7.9 Score=23.69 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=4.7
Q ss_pred cccccccccc
Q 045986 98 ECVICLEEFV 107 (148)
Q Consensus 98 ~C~ICl~~~~ 107 (148)
.|+-|-..+.
T Consensus 10 ~C~~C~~~I~ 19 (123)
T 2l3k_A 10 LCASCDKRIR 19 (123)
T ss_dssp CCSSSSCCCC
T ss_pred cccCCCCeec
Confidence 3555544444
No 184
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.36 E-value=11 Score=20.59 Aligned_cols=36 Identities=22% Similarity=0.512 Sum_probs=18.6
Q ss_pred ccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 98 ECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 98 ~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
.|+-|-..+.. + .+.+-+..||.+|. +|-.|+.+|.
T Consensus 7 ~C~~C~~~I~~-~---~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITG-R---VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSS-C---CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CcccCCCEecC-e---eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 56666665543 1 12224566666652 3555555553
No 185
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.16 E-value=13 Score=20.66 Aligned_cols=37 Identities=24% Similarity=0.709 Sum_probs=24.0
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+. ++.++. -+..||.+|. +|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEec-cceEEE---CCceeCccCC--------ccccCCCCCC
Confidence 47999988876 333332 5788888874 3666666553
No 186
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=52.88 E-value=2.9 Score=31.44 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=0.0
Q ss_pred ccccccccccccCCCeeeecCCCCccchHHhHHHHHhC-------CCCCcccCCCC
Q 045986 96 TSECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSD-------EFTCPICRSSI 144 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~~ 144 (148)
...|.+|-..|.-...-..-..||++||..|-..++.. ...|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 46899999988643211112239999999999776521 23377776554
No 187
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=52.51 E-value=6.3 Score=25.92 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=22.2
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..|+.|-..+....- .. =|..|+..|... .....|..|...|.+
T Consensus 88 F~C~~C~~~L~~~~f---~~-~g~~yC~~~y~~--~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 88 LKCSDCHVPLAERCF---SR-GESVYCKDDFFK--RFGTKCAACQLGIPP 131 (182)
T ss_dssp TSCTTTCCCCSSCCE---EE-TTEEECHHHHHH--TTSCCCTTTCCCCCS
T ss_pred CccCCCCCccCCCce---eE-CCEeeecCcccc--ccccccccCCCccCC
Confidence 456666666554321 11 455565555543 123456666665543
No 188
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=51.92 E-value=10 Score=23.35 Aligned_cols=38 Identities=21% Similarity=0.557 Sum_probs=28.0
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+.....+.. -+..||.+|+ +|-.|+.+|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYA---MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEE---TTEEEETTTS--------BCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEe---CCcEEccccc--------CcCcCCCccc
Confidence 579999988876543443 5788998883 5888887774
No 189
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.46 E-value=20 Score=19.09 Aligned_cols=37 Identities=24% Similarity=0.614 Sum_probs=21.7
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+.. +.+ .. -+..||.+|. +|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGV--TY-REQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-SEE--ES-SSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeecc-ceE--EE-CccccCCCCC--------ccCCCCCcCC
Confidence 457777777653 222 22 5667777663 4666666653
No 190
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=51.00 E-value=5.1 Score=23.89 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=21.3
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSI 144 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 144 (148)
..||.|-.+++.. -++.++..|=.. +.....||-|.+++
T Consensus 33 ~~CP~Cq~eL~~~--------g~~~hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQD--------NGHARCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEE--------TTEEEETTTCCE-EEEEEECTTTCSBC
T ss_pred ccCccCCCcceec--------CCEEECccccch-hhccccCcchhhHH
Confidence 3688887775432 223334444221 13345588887765
No 191
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=50.53 E-value=0.77 Score=19.62 Aligned_cols=12 Identities=17% Similarity=0.714 Sum_probs=9.2
Q ss_pred cchHHhHHHHHh
Q 045986 121 VYHSHCIIRWFS 132 (148)
Q Consensus 121 ~FH~~Ci~~Wl~ 132 (148)
.|+..|-.+||.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 478888888874
No 192
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.35 E-value=12 Score=21.35 Aligned_cols=37 Identities=16% Similarity=0.507 Sum_probs=26.3
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+. ++.+. . -+..||.+|+ +|-.|+.+|.
T Consensus 26 ~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 26 PMCAHCNQVIR-GPFLV--A-LGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CBBSSSCCBCC-SCEEE--E-TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCccCCCEec-ceEEE--E-CCccccccCC--------ccCCCCCCCC
Confidence 57999998884 44333 2 6788998874 5778877764
No 193
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.28 E-value=13 Score=22.65 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=30.1
Q ss_pred cccccccccccC-CCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVS-GDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~-~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..|+.|-..+.+ +... ... =|..|+..|...-+..+..|-.|..+|..
T Consensus 33 F~C~~C~~~L~~~~~~~-~~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-YTK-SGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECC-EEE-TTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeE-EEE-CCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 457777666642 1111 122 56778888887766555578888887764
No 194
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=48.92 E-value=20 Score=16.59 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 045986 23 LTYTLTIALSLLLLIWVY 40 (148)
Q Consensus 23 i~~~i~i~~~l~~~i~~~ 40 (148)
+.|+++.+..+.++++.+
T Consensus 4 ~vYt~ll~~tlgiiFFAI 21 (32)
T 3arc_T 4 ITYVFIFACIIALFFFAI 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 455555554444444333
No 195
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.06 E-value=15 Score=20.36 Aligned_cols=39 Identities=21% Similarity=0.477 Sum_probs=24.4
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+..++.+ +..-+..||.+|. +|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRE--LFYEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCB--CCCSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCccccCcEE--EEeCCccccccCC--------eecCCCCccC
Confidence 4688888887733322 2214677887773 4677766654
No 196
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=47.97 E-value=1.2 Score=25.58 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=15.5
Q ss_pred CCCccchHHhHHHHHhCCCCCc
Q 045986 117 FCKHVYHSHCIIRWFSDEFTCP 138 (148)
Q Consensus 117 ~C~H~FH~~Ci~~Wl~~~~~CP 138 (148)
.|+|.|+..|-..|-. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 4999999999999833 4453
No 197
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=47.47 E-value=17 Score=19.82 Aligned_cols=38 Identities=18% Similarity=0.567 Sum_probs=26.5
Q ss_pred cccccccccccC---C-CeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVS---G-DLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~---~-~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+.. + +.+.. -+..||.+|. +|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY---EGQSWHDYCF--------HCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE---TTEEEETTTC--------BCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCceeEEE---CcceeCcccC--------EehhcCCCCC
Confidence 469999888874 2 33332 5678998873 5888887765
No 198
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=47.16 E-value=3.7 Score=26.70 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=11.9
Q ss_pred CCccchHHhHHHHHhCCCCCcccCCCC
Q 045986 118 CKHVYHSHCIIRWFSDEFTCPICRSSI 144 (148)
Q Consensus 118 C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 144 (148)
|||.|-.. .....||.|-.++
T Consensus 138 Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 138 CGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp SCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCcccCC------CCCCcCCCCCCcc
Confidence 66666422 1233688887653
No 199
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=45.39 E-value=23 Score=19.45 Aligned_cols=10 Identities=40% Similarity=0.325 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 045986 26 TLTIALSLLL 35 (148)
Q Consensus 26 ~i~i~~~l~~ 35 (148)
++..++++++
T Consensus 13 vlGg~~~lll 22 (70)
T 2klu_A 13 VLGGVAGLLL 22 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHHHHH
Confidence 3333333333
No 200
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=45.00 E-value=33 Score=20.70 Aligned_cols=45 Identities=13% Similarity=0.320 Sum_probs=21.5
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..|+.|-..+... ... .. =|..|+..|...- ....|+.|..+|.+
T Consensus 31 F~C~~C~~~L~~~-~f~-~~-~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGE-IYV-MV-NDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTS-EEE-EE-TTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcC-EEE-eE-CCEEechHHhCcC--cCccCcccCCcCCc
Confidence 3455555555422 111 11 3455555555442 34456666666654
No 201
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.95 E-value=19 Score=19.80 Aligned_cols=37 Identities=19% Similarity=0.617 Sum_probs=23.5
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+... . +.. -+..||.+|. +|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~-~--v~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VTY-RDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-C--EES-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecCc-E--EEE-CCchhhhhhC--------CcccCCCcCC
Confidence 4688887777542 2 222 5677887773 4777777664
No 202
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=43.92 E-value=13 Score=24.37 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=11.6
Q ss_pred CCccchHHhHHHHHhCCCCCcccCCC
Q 045986 118 CKHVYHSHCIIRWFSDEFTCPICRSS 143 (148)
Q Consensus 118 C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 143 (148)
|||++-. .....||+|..+
T Consensus 144 CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 144 CGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp TCCEEES-------CCCSBCTTTCCB
T ss_pred CCCeeCC-------CCCCCCCCCCCC
Confidence 6766641 234479999753
No 203
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.44 E-value=30 Score=18.33 Aligned_cols=37 Identities=24% Similarity=0.592 Sum_probs=21.2
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+.. +.+.. -+..||.+|. +|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCC
Confidence 457777776643 33322 4566776663 3666666553
No 204
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=42.80 E-value=28 Score=16.42 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 045986 26 TLTIALSLLLLIWVYE 41 (148)
Q Consensus 26 ~i~i~~~l~~~i~~~~ 41 (148)
.+.+++.+++++..++
T Consensus 9 alt~i~gl~vif~~lg 24 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLG 24 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3344444444444443
No 205
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=42.74 E-value=8.5 Score=23.57 Aligned_cols=20 Identities=30% Similarity=0.941 Sum_probs=13.9
Q ss_pred CCccchHHhHHHHHhCCC-CCcccCCC
Q 045986 118 CKHVYHSHCIIRWFSDEF-TCPICRSS 143 (148)
Q Consensus 118 C~H~FH~~Ci~~Wl~~~~-~CP~CR~~ 143 (148)
|||.|-.+ .... .||.|..+
T Consensus 79 CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 79 CSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp SSCEECSC------CSTTCCCSSSSSC
T ss_pred CCCEEeCC------CCCCCcCccccCC
Confidence 78887652 2356 79999775
No 206
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=42.66 E-value=5.9 Score=26.53 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=12.0
Q ss_pred CCccchHHhHHHHHhCCCCCcccCCC
Q 045986 118 CKHVYHSHCIIRWFSDEFTCPICRSS 143 (148)
Q Consensus 118 C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 143 (148)
|||++-.+ .....||+|.++
T Consensus 161 CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 161 CGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp TCCEEEEE------ECCSBCTTTCCB
T ss_pred CCCEeeCC------CCCCCCCCCcCC
Confidence 67665422 123479999774
No 207
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=42.13 E-value=1.4 Score=25.50 Aligned_cols=17 Identities=24% Similarity=0.829 Sum_probs=13.5
Q ss_pred ecCCCCccchHHhHHHH
Q 045986 114 ILPFCKHVYHSHCIIRW 130 (148)
Q Consensus 114 ~lp~C~H~FH~~Ci~~W 130 (148)
.-|.|+|.|+..|-.+|
T Consensus 45 ~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp ECTTTCCEECSSSCSBC
T ss_pred EeCCCCCccccccCCch
Confidence 34459999999998887
No 208
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=42.11 E-value=20 Score=23.69 Aligned_cols=38 Identities=21% Similarity=0.528 Sum_probs=25.1
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+.|-..+..++.+.. -+..||.+| -+|-.|+.+|.
T Consensus 116 ~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 153 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLE 153 (192)
T ss_dssp EECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCC
T ss_pred CcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCC
Confidence 468888888776665543 466777766 34666766654
No 209
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.76 E-value=25 Score=19.40 Aligned_cols=37 Identities=24% Similarity=0.777 Sum_probs=24.2
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+.. ..++. -+..||.+|. +|..|+.+|.
T Consensus 16 ~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILD-RILRA---MGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCS-CCEEE---TTEEECTTTC--------BCSSSCCBCT
T ss_pred CccccCCCeecc-eeEEE---CCccccHHhc--------CcccCCCccC
Confidence 578888887763 32222 5678887773 4777777664
No 210
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=41.39 E-value=21 Score=18.86 Aligned_cols=38 Identities=16% Similarity=0.476 Sum_probs=25.1
Q ss_pred cccccccccccCC-CeeeecCCCCccch--HHhHHHHHhCCCCCcccCCCCC
Q 045986 97 SECVICLEEFVSG-DLFRILPFCKHVYH--SHCIIRWFSDEFTCPICRSSIY 145 (148)
Q Consensus 97 ~~C~ICl~~~~~~-~~vr~lp~C~H~FH--~~Ci~~Wl~~~~~CP~CR~~~~ 145 (148)
..|+-|-..+..+ +.+.. -+..|| .+|. +|-.|+.+|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a---~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY---NNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEE---TTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEE---CCCccCCCCCCE--------ECCCCCCcCC
Confidence 3688888887764 33332 577888 8873 4777777664
No 211
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=41.27 E-value=2.1 Score=31.12 Aligned_cols=46 Identities=20% Similarity=0.428 Sum_probs=29.8
Q ss_pred ccccccccccccCCCeeee---cCCCCccchHHhHHHHHhCCCCCcccCC
Q 045986 96 TSECVICLEEFVSGDLFRI---LPFCKHVYHSHCIIRWFSDEFTCPICRS 142 (148)
Q Consensus 96 ~~~C~ICl~~~~~~~~vr~---lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 142 (148)
...|++|-..-..+ .++. ..+=+|.+|.-|-..|--....||.|-.
T Consensus 182 ~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 182 RTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp CSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred CCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 36899997764332 2221 1112356777888888777888999965
No 212
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.79 E-value=5.2 Score=24.10 Aligned_cols=8 Identities=25% Similarity=0.912 Sum_probs=4.3
Q ss_pred cccccccc
Q 045986 97 SECVICLE 104 (148)
Q Consensus 97 ~~C~ICl~ 104 (148)
..||+|-.
T Consensus 48 ~~CPvCgs 55 (112)
T 1l8d_A 48 GKCPVCGR 55 (112)
T ss_dssp EECTTTCC
T ss_pred CCCCCCCC
Confidence 35666644
No 213
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=38.63 E-value=15 Score=18.71 Aligned_cols=11 Identities=36% Similarity=0.914 Sum_probs=6.3
Q ss_pred CCCCcccCCCC
Q 045986 134 EFTCPICRSSI 144 (148)
Q Consensus 134 ~~~CP~CR~~~ 144 (148)
.-.||.|--.+
T Consensus 23 ~IrCpyCGyri 33 (48)
T 4ayb_P 23 GVRCPYCGYKI 33 (48)
T ss_dssp SSCCTTTCCSC
T ss_pred CcccCccCcEE
Confidence 34588885443
No 214
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=37.82 E-value=16 Score=21.01 Aligned_cols=10 Identities=20% Similarity=0.760 Sum_probs=5.1
Q ss_pred cccccccccc
Q 045986 98 ECVICLEEFV 107 (148)
Q Consensus 98 ~C~ICl~~~~ 107 (148)
.|+.|-.++.
T Consensus 4 ~CP~C~~~l~ 13 (81)
T 2jrp_A 4 TCPVCHHALE 13 (81)
T ss_dssp CCSSSCSCCE
T ss_pred CCCCCCCccc
Confidence 4555555443
No 215
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=37.76 E-value=1.9 Score=23.25 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=18.1
Q ss_pred ccccccccc-cccCCCeeeecCCCCccchHHhHHHH
Q 045986 96 TSECVICLE-EFVSGDLFRILPFCKHVYHSHCIIRW 130 (148)
Q Consensus 96 ~~~C~ICl~-~~~~~~~vr~lp~C~H~FH~~Ci~~W 130 (148)
...|.||+. .|.++-.=.-.- |.-.|+..|-..|
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v 43 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRV 43 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEE
T ss_pred cchhhhhccceeccCCCccccc-cCCeeecccCCEe
Confidence 468999984 455552222222 3444556665544
No 216
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.42 E-value=33 Score=18.73 Aligned_cols=38 Identities=21% Similarity=0.536 Sum_probs=24.6
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhHHHHHhCCCCCcccCCCCCC
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCIIRWFSDEFTCPICRSSIYL 146 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 146 (148)
..|+-|-..+.. +.++. -+..||.+|. +|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCcC--------ChhhCCCCCCC
Confidence 468888887764 33332 4677887773 47777776643
No 217
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=37.15 E-value=33 Score=18.94 Aligned_cols=44 Identities=23% Similarity=0.539 Sum_probs=28.6
Q ss_pred cccccccccccC-CCeeeecCCCCccchHHhHHHHHh-----CCCCCcccCC
Q 045986 97 SECVICLEEFVS-GDLFRILPFCKHVYHSHCIIRWFS-----DEFTCPICRS 142 (148)
Q Consensus 97 ~~C~ICl~~~~~-~~~vr~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~ 142 (148)
..| ||-..+.. +..|.--. |.-.||..|+.---. ..-.||.|+.
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~-C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDA-CKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp EET-TTTEECCTTSCEEECTT-TCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCC-CCCCEecccccccccccCCCCEEECCCCcc
Confidence 344 88887653 34555454 898999999953211 2345999975
No 218
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.96 E-value=27 Score=20.82 Aligned_cols=10 Identities=20% Similarity=0.461 Sum_probs=4.8
Q ss_pred cccccccccc
Q 045986 98 ECVICLEEFV 107 (148)
Q Consensus 98 ~C~ICl~~~~ 107 (148)
.|+-|-..+.
T Consensus 5 ~C~~C~~~I~ 14 (114)
T 1j2o_A 5 TCGGCQQNIG 14 (114)
T ss_dssp CBSSSCSCBC
T ss_pred CCcCCCCeeC
Confidence 3555544444
No 219
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=35.20 E-value=22 Score=20.54 Aligned_cols=32 Identities=19% Similarity=0.524 Sum_probs=20.2
Q ss_pred cccccccccccCCCeeee-cCCCCccchHHhHHH
Q 045986 97 SECVICLEEFVSGDLFRI-LPFCKHVYHSHCIIR 129 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~-lp~C~H~FH~~Ci~~ 129 (148)
..|.||-+. ..|..|.- .+.|.-.||..|-..
T Consensus 18 l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 18 LTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHH
T ss_pred CCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHH
Confidence 469999643 12444431 223788999999765
No 220
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=34.34 E-value=22 Score=20.54 Aligned_cols=29 Identities=28% Similarity=0.590 Sum_probs=20.0
Q ss_pred cccccccccccCCCeeeecCCCCccchHHhH
Q 045986 97 SECVICLEEFVSGDLFRILPFCKHVYHSHCI 127 (148)
Q Consensus 97 ~~C~ICl~~~~~~~~vr~lp~C~H~FH~~Ci 127 (148)
..|+.|-..+..++.+... =+..||.+|.
T Consensus 67 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF 95 (101)
T 2cup_A 67 PKCKGCFKAIVAGDQNVEY--KGTVWHKDCF 95 (101)
T ss_dssp CBCSSSCCBCCSSSCEEES--SSCEEETTTC
T ss_pred CccccCCCccccCCeEEEe--CCcchHHhCC
Confidence 5799998888766543322 5788998773
No 221
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=34.17 E-value=12 Score=17.81 Aligned_cols=6 Identities=17% Similarity=0.352 Sum_probs=2.3
Q ss_pred HHHHHH
Q 045986 42 ICIWAR 47 (148)
Q Consensus 42 ~~~~~~ 47 (148)
+..++|
T Consensus 27 ~~~~iR 32 (35)
T 1iij_A 27 VGILIK 32 (35)
T ss_dssp TTHHHH
T ss_pred hheEEe
Confidence 333443
No 222
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=31.26 E-value=16 Score=24.70 Aligned_cols=19 Identities=32% Similarity=0.683 Sum_probs=11.9
Q ss_pred CCccchHHhHHHHHhCCCCCcccCCC
Q 045986 118 CKHVYHSHCIIRWFSDEFTCPICRSS 143 (148)
Q Consensus 118 C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 143 (148)
|||++-. .....||+|..+
T Consensus 177 CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 177 CGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp SCCEEES-------SCCSBCTTTCCB
T ss_pred CCCEEcC-------cCCCCCCCCCCC
Confidence 7777542 122479999764
No 223
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.10 E-value=43 Score=17.80 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=12.6
Q ss_pred CccccCCccCCCCCcccccccc
Q 045986 82 PAEKYDGHLHNKKFTSECVICL 103 (148)
Q Consensus 82 ~~~~~~~~~~~~~~~~~C~ICl 103 (148)
...+...+......+..|.+|-
T Consensus 5 ~~~~sk~Qr~p~pgePvCvvCG 26 (60)
T 2yqp_A 5 SSGFSKTQRWAEPGEPICVVCG 26 (60)
T ss_dssp CCCSCCCCCCCCTTSCCCSSSS
T ss_pred ccchhhhhcCCCCCCceEEEec
Confidence 3344444444445567899994
No 224
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=26.86 E-value=92 Score=17.64 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=18.9
Q ss_pred chhhhhhhhhhccccCccchhHHHHHHHHHHHHHHHHH
Q 045986 3 TLFVIRRLMDLRSNRQAEIVLTYTLTIALSLLLLIWVY 40 (148)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~~~i~i~~~l~~~i~~~ 40 (148)
+|..++.+...+-+ ..+.|+.-+.+++++++.++
T Consensus 7 ~f~~ld~~~~~~~~----~~I~~G~~iGAs~llliil~ 40 (80)
T 2k9p_A 7 TFDELQGLVNSTVT----QAILFGVRSGAAALTLIVVW 40 (80)
T ss_dssp CTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 67777777666666554443
No 225
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=26.26 E-value=21 Score=18.02 Aligned_cols=8 Identities=50% Similarity=1.389 Sum_probs=6.3
Q ss_pred CCcccCCC
Q 045986 136 TCPICRSS 143 (148)
Q Consensus 136 ~CP~CR~~ 143 (148)
.||+|.+.
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 69999763
No 226
>2roo_A Neurotoxin MAGI-4; spider, sodium channel inhibitor, cleavage on PAIR of basic residues, ionic channel inhibitor, knottin, secreted; NMR {Synthetic}
Probab=25.78 E-value=1.7 Score=21.37 Aligned_cols=16 Identities=19% Similarity=0.889 Sum_probs=12.2
Q ss_pred HHhHHHHHhCCCCCcc
Q 045986 124 SHCIIRWFSDEFTCPI 139 (148)
Q Consensus 124 ~~Ci~~Wl~~~~~CP~ 139 (148)
.+||..|.+.+.+|-.
T Consensus 18 mkCiyAWYnqq~sCq~ 33 (43)
T 2roo_A 18 YNCVYAWYNQQSSCER 33 (43)
T ss_dssp CEEEECGGGSSEEEEC
T ss_pred HHHHHHHHccCCchhh
Confidence 3688889988888753
No 227
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=25.15 E-value=16 Score=20.15 Aligned_cols=10 Identities=30% Similarity=1.142 Sum_probs=6.6
Q ss_pred CCCcccCCCC
Q 045986 135 FTCPICRSSI 144 (148)
Q Consensus 135 ~~CP~CR~~~ 144 (148)
..||+|..++
T Consensus 10 ~~CP~Cgkp~ 19 (68)
T 1lv3_A 10 VNCPTCGKTV 19 (68)
T ss_dssp EECTTTCCEE
T ss_pred CcCCCCCCcc
Confidence 4577777665
No 228
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.89 E-value=41 Score=18.50 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=6.9
Q ss_pred ccccccccccc
Q 045986 97 SECVICLEEFV 107 (148)
Q Consensus 97 ~~C~ICl~~~~ 107 (148)
-.|++|..++.
T Consensus 9 L~CP~ck~~L~ 19 (69)
T 2pk7_A 9 LACPICKGPLK 19 (69)
T ss_dssp CCCTTTCCCCE
T ss_pred eeCCCCCCcCe
Confidence 35777776654
No 229
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=24.35 E-value=1.4e+02 Score=18.72 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=4.3
Q ss_pred hhHHHHHHHH
Q 045986 22 VLTYTLTIAL 31 (148)
Q Consensus 22 ~i~~~i~i~~ 31 (148)
.++|+++++.
T Consensus 52 ~ylYIL~vmg 61 (138)
T 2k21_A 52 EALYVLMVLG 61 (138)
T ss_dssp TTCHHHHHHH
T ss_pred eeehHHHHHH
Confidence 3444444433
No 230
>1qdp_A Robustoxin; neurotoxin, cystine knot, inhibitor cystine knot motif, sodium channel modulator, funnel WEB spider, venom; NMR {Atrax robustus} SCOP: g.3.6.2 PDB: 1vtx_A
Probab=24.04 E-value=1.7 Score=21.18 Aligned_cols=16 Identities=25% Similarity=0.899 Sum_probs=11.9
Q ss_pred HHhHHHHHhCCCCCcc
Q 045986 124 SHCIIRWFSDEFTCPI 139 (148)
Q Consensus 124 ~~Ci~~Wl~~~~~CP~ 139 (148)
.+||..|.+.+.+|-.
T Consensus 18 mkCiyAWYnqq~sCq~ 33 (42)
T 1qdp_A 18 MKCIYAWYNQQGSCQT 33 (42)
T ss_dssp CEEECCSSCSCCEEES
T ss_pred HHHHHHHHccCCchHH
Confidence 3688888888887753
No 231
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=23.86 E-value=55 Score=25.32 Aligned_cols=44 Identities=23% Similarity=0.545 Sum_probs=29.3
Q ss_pred ccccccccccc-CCCeeeecCCCCccchHHhHHHHHh-----CCCCCcccCC
Q 045986 97 SECVICLEEFV-SGDLFRILPFCKHVYHSHCIIRWFS-----DEFTCPICRS 142 (148)
Q Consensus 97 ~~C~ICl~~~~-~~~~vr~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~ 142 (148)
..| ||-..+. .+..|.--- |.-.||..|+.-=-. ..-.||.|+.
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDI-CKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTT-TCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccC-CCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 456 9988875 444565555 899999999943211 1235999974
No 232
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=23.81 E-value=28 Score=18.01 Aligned_cols=8 Identities=50% Similarity=1.522 Sum_probs=6.1
Q ss_pred CCcccCCC
Q 045986 136 TCPICRSS 143 (148)
Q Consensus 136 ~CP~CR~~ 143 (148)
.||+|.+.
T Consensus 38 ~CP~Cg~~ 45 (52)
T 1e8j_A 38 ACPVCGAS 45 (52)
T ss_dssp CCSSSCCC
T ss_pred cCCCCCCc
Confidence 69999763
No 233
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=23.47 E-value=21 Score=29.68 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=6.5
Q ss_pred cCCCCccchHHhHHHHHhCCCCCcccCCC
Q 045986 115 LPFCKHVYHSHCIIRWFSDEFTCPICRSS 143 (148)
Q Consensus 115 lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 143 (148)
+. +.|.+|++|+..|= ...||.|+.-
T Consensus 174 ~~-~~~~~~~~~~~~w~--~~~~~~c~h~ 199 (854)
T 3ihp_A 174 LS-ADSASRKQEVQAWD--GEVRQVSKHA 199 (854)
T ss_dssp TC-------------------CCCBCTTT
T ss_pred Hh-cCCHHHHHHHHhhc--CccCCCCcCc
Confidence 44 77889999999993 4448888764
No 234
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=23.31 E-value=28 Score=18.24 Aligned_cols=8 Identities=38% Similarity=1.049 Sum_probs=6.1
Q ss_pred CCcccCCC
Q 045986 136 TCPICRSS 143 (148)
Q Consensus 136 ~CP~CR~~ 143 (148)
.||+|.++
T Consensus 38 ~CP~Cga~ 45 (55)
T 2v3b_B 38 VCPDCGVG 45 (55)
T ss_dssp CCTTTCCC
T ss_pred cCCCCCCC
Confidence 69999763
No 235
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=22.48 E-value=27 Score=18.27 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=8.3
Q ss_pred cccccccccccC
Q 045986 97 SECVICLEEFVS 108 (148)
Q Consensus 97 ~~C~ICl~~~~~ 108 (148)
-.|.+|--.|..
T Consensus 4 y~C~vCGyvYd~ 15 (54)
T 4rxn_A 4 YTCTVCGYIYDP 15 (54)
T ss_dssp EEETTTCCEECT
T ss_pred eECCCCCeEECC
Confidence 368888777654
No 236
>4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A
Probab=22.48 E-value=53 Score=22.41 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=16.3
Q ss_pred eeeecCCCCccchHH--------hHHHHHhCC
Q 045986 111 LFRILPFCKHVYHSH--------CIIRWFSDE 134 (148)
Q Consensus 111 ~vr~lp~C~H~FH~~--------Ci~~Wl~~~ 134 (148)
++.++|++||..+.+ =|..||++|
T Consensus 250 ~l~~~~~~gH~~~~e~~~e~v~~~i~~FL~~H 281 (281)
T 4fbl_A 250 ELLWLENSYHVATLDNDKELILERSLAFIRKH 281 (281)
T ss_dssp EEEEESSCCSCGGGSTTHHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCcCccccCHHHHHHHHHHHHHhC
Confidence 567788899986532 356677654
No 237
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.42 E-value=80 Score=17.77 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=20.5
Q ss_pred CCCccccccccccccC-CCeeeecCCCCccchHHh
Q 045986 93 KKFTSECVICLEEFVS-GDLFRILPFCKHVYHSHC 126 (148)
Q Consensus 93 ~~~~~~C~ICl~~~~~-~~~vr~lp~C~H~FH~~C 126 (148)
..++..|+.|.+.|-- .+.-.+=++|.|..+.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 3445789999998742 111122334777777766
No 238
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=22.02 E-value=1.2e+02 Score=17.26 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=27.1
Q ss_pred cccccccccccCC---CeeeecCCCCccchHHhHHHHHhCCCCCcc
Q 045986 97 SECVICLEEFVSG---DLFRILPFCKHVYHSHCIIRWFSDEFTCPI 139 (148)
Q Consensus 97 ~~C~ICl~~~~~~---~~vr~lp~C~H~FH~~Ci~~Wl~~~~~CP~ 139 (148)
..|.+|-+.-... ...|-+= |+=..|.+|.+.. ...|++
T Consensus 39 s~C~vC~k~c~s~~~L~g~rC~W-Cq~~VH~~C~~~~---~~eC~l 80 (84)
T 1r79_A 39 AKCTVCDKTCGSVLRLQDWRCLW-CKAMVHTSCKESL---LTKCSG 80 (84)
T ss_dssp CBCSSSCCBCCCTTTCCCEEESS-SCCEECHHHHHHC---CSCBCC
T ss_pred CEeCCCCCEeCCccCCCCCCCcc-cChhHHHHHHHhc---cCcCCC
Confidence 6899997764332 2344444 8899999999885 556765
No 239
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.94 E-value=28 Score=17.98 Aligned_cols=8 Identities=38% Similarity=1.410 Sum_probs=6.0
Q ss_pred CCcccCCC
Q 045986 136 TCPICRSS 143 (148)
Q Consensus 136 ~CP~CR~~ 143 (148)
.||+|.+.
T Consensus 37 ~CP~Cg~~ 44 (52)
T 1yk4_A 37 VCPLCGAP 44 (52)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCCC
Confidence 69999763
No 240
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=21.37 E-value=17 Score=21.13 Aligned_cols=11 Identities=27% Similarity=1.126 Sum_probs=8.1
Q ss_pred ccccccccccc
Q 045986 96 TSECVICLEEF 106 (148)
Q Consensus 96 ~~~C~ICl~~~ 106 (148)
...|.||+..|
T Consensus 45 ~i~C~VCr~tF 55 (86)
T 1wvk_A 45 SIQCKVCMQTF 55 (86)
T ss_dssp CEEETTTTEEE
T ss_pred CCCChHhHhhH
Confidence 36799988765
No 241
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.18 E-value=26 Score=17.61 Aligned_cols=6 Identities=67% Similarity=1.796 Sum_probs=2.8
Q ss_pred CcccCC
Q 045986 137 CPICRS 142 (148)
Q Consensus 137 CP~CR~ 142 (148)
||.|..
T Consensus 8 CP~C~~ 13 (50)
T 1pft_A 8 CPACES 13 (50)
T ss_dssp CTTTSC
T ss_pred CcCCCC
Confidence 444443
No 242
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=20.69 E-value=66 Score=17.08 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=13.0
Q ss_pred CCccch--HHhHHHHHhCCC
Q 045986 118 CKHVYH--SHCIIRWFSDEF 135 (148)
Q Consensus 118 C~H~FH--~~Ci~~Wl~~~~ 135 (148)
-||.-| ..||..||..+.
T Consensus 17 TG~HcH~EA~tIA~~L~~~~ 36 (61)
T 3ph0_C 17 TGHHCHQEAASIADWLAQEE 36 (61)
T ss_dssp HTTTCHHHHHHHHHHHHTSS
T ss_pred ccchHHHHHHHHHHHHHhCC
Confidence 366666 468999998754
Done!