BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045987
         (510 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 15/79 (18%)

Query: 164 ARVSVRARCDAPTLNDGCQWRKYGQKIRKRKPMYTLLFLENYY----------KNVQRCA 213
           +R+ V  +     +NDG +WRKYGQK  K  P     +  +YY          K+V+R +
Sbjct: 1   SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSP-----YPRSYYRCSSPGCPVKKHVERSS 55

Query: 214 EDMSILITTYEGTHSHPLP 232
            D  +LITTYEG H H +P
Sbjct: 56  HDTKLLITTYEGKHDHDMP 74


>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 15/75 (20%)

Query: 168 VRARCDAPTLNDGCQWRKYGQKIRKRKPMYTLLFLENYYK----------NVQRCAEDMS 217
           V+   +   L+DG +WRKYGQK+ K  P     +  +YYK          +V+R A D  
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNP-----YPRSYYKCTTPGCGVRKHVERAATDPK 62

Query: 218 ILITTYEGTHSHPLP 232
            ++TTYEG H+H LP
Sbjct: 63  AVVTTYEGKHNHDLP 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.127    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,961,824
Number of Sequences: 62578
Number of extensions: 379657
Number of successful extensions: 765
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 9
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)