Query 045987
Match_columns 510
No_of_seqs 218 out of 749
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03106 WRKY: WRKY DNA -bindi 99.9 3.2E-26 7E-31 182.1 2.1 54 177-230 1-59 (60)
2 smart00774 WRKY DNA binding do 99.9 3.7E-25 8E-30 176.1 4.2 53 177-229 1-59 (59)
3 PF03101 FAR1: FAR1 DNA-bindin 79.1 2 4.3E-05 35.4 3.0 31 201-232 60-90 (91)
4 PF07875 Coat_F: Coat F domain 62.4 13 0.00028 29.7 4.0 31 6-36 27-57 (64)
5 PF05377 FlaC_arch: Flagella a 41.2 47 0.001 27.1 4.1 34 2-36 17-50 (55)
6 TIGR00219 mreC rod shape-deter 30.0 27 0.0006 35.8 1.4 14 3-16 95-108 (283)
7 KOG4196 bZIP transcription fac 27.5 59 0.0013 30.8 3.0 26 2-27 91-116 (135)
8 PF15066 CAGE1: Cancer-associa 27.3 70 0.0015 35.9 3.9 35 2-36 407-441 (527)
9 PF04500 FLYWCH: FLYWCH zinc f 27.0 20 0.00043 27.0 -0.1 47 177-229 12-62 (62)
10 PF07334 IFP_35_N: Interferon- 23.6 1.1E+02 0.0023 26.6 3.6 23 1-23 2-24 (76)
11 PF15058 Speriolin_N: Sperioli 23.1 56 0.0012 32.8 2.1 22 1-22 14-35 (200)
12 PF06156 DUF972: Protein of un 22.4 96 0.0021 28.0 3.3 25 3-27 19-43 (107)
13 PLN03097 FHY3 Protein FAR-RED 21.3 1.3E+02 0.0029 35.8 5.0 34 201-235 159-192 (846)
14 PF03859 CG-1: CG-1 domain; I 21.2 35 0.00077 31.6 0.3 8 178-185 52-59 (118)
15 PRK11677 hypothetical protein; 20.2 1.4E+02 0.0031 28.0 4.0 21 10-30 58-78 (134)
No 1
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=99.92 E-value=3.2e-26 Score=182.14 Aligned_cols=54 Identities=50% Similarity=0.725 Sum_probs=47.5
Q ss_pred CCCCcccccccccccCCCCCCCCc-----cCCccccccccccCCCCEEEEEEeecCCCC
Q 045987 177 LNDGCQWRKYGQKIRKRKPMYTLL-----FLENYYKNVQRCAEDMSILITTYEGTHSHP 230 (510)
Q Consensus 177 ~~DGy~WRKYGQK~IKGnp~PRsY-----~gC~arKqVQR~~~D~~i~~tTYeG~HnH~ 230 (510)
++|||+|||||||.|+|+++||+| .+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus 1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~ 59 (60)
T PF03106_consen 1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP 59 (60)
T ss_dssp --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence 579999999999999999999998 999999999999999999999999999997
No 2
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=99.91 E-value=3.7e-25 Score=176.13 Aligned_cols=53 Identities=47% Similarity=0.701 Sum_probs=51.2
Q ss_pred CCCCcccccccccccCCCCCCCCc------cCCccccccccccCCCCEEEEEEeecCCC
Q 045987 177 LNDGCQWRKYGQKIRKRKPMYTLL------FLENYYKNVQRCAEDMSILITTYEGTHSH 229 (510)
Q Consensus 177 ~~DGy~WRKYGQK~IKGnp~PRsY------~gC~arKqVQR~~~D~~i~~tTYeG~HnH 229 (510)
++|||+|||||||.|+|+++||+| ++|+|+|+|||+++|+.+++|||+|+|||
T Consensus 1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h 59 (59)
T smart00774 1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59 (59)
T ss_pred CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence 479999999999999999999999 69999999999999999999999999998
No 3
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=79.13 E-value=2 Score=35.45 Aligned_cols=31 Identities=29% Similarity=0.221 Sum_probs=28.0
Q ss_pred cCCccccccccccCCCCEEEEEEeecCCCCCC
Q 045987 201 FLENYYKNVQRCAEDMSILITTYEGTHSHPLP 232 (510)
Q Consensus 201 ~gC~arKqVQR~~~D~~i~~tTYeG~HnH~~P 232 (510)
.+|+|+=.|.+.. |....++.+..+|||++-
T Consensus 60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~ 90 (91)
T PF03101_consen 60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC 90 (91)
T ss_pred cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence 8999999998877 888999999999999874
No 4
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=62.45 E-value=13 Score=29.68 Aligned_cols=31 Identities=23% Similarity=0.503 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q 045987 6 EENERLKKMLEQIEKDYKSLQLRFFDILQKA 36 (510)
Q Consensus 6 eEN~rLK~ML~qI~kdY~sLQm~f~~imQqq 36 (510)
-.|..||..|.++.++....|.+++++|.+.
T Consensus 27 ~~np~lR~~l~~~~~~~~~~~~~l~~~m~~k 57 (64)
T PF07875_consen 27 CANPELRQILQQILNECQQMQYELFNYMNQK 57 (64)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3588999999999999999999999999885
No 5
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=41.25 E-value=47 Score=27.11 Aligned_cols=34 Identities=29% Similarity=0.643 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q 045987 2 GEVREENERLKKMLEQIEKDYKSLQLRFFDILQKA 36 (510)
Q Consensus 2 gev~eEN~rLK~ML~qI~kdY~sLQm~f~~imQqq 36 (510)
+-||.||+.||.-|+.|..+-+.| |-++.++-++
T Consensus 17 ~tvk~en~~i~~~ve~i~envk~l-l~lYE~Vs~~ 50 (55)
T PF05377_consen 17 NTVKKENEEISESVEKIEENVKDL-LSLYEVVSNQ 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcc
Confidence 458999999999999999999888 4566777553
No 6
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.04 E-value=27 Score=35.77 Aligned_cols=14 Identities=36% Similarity=0.783 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHH
Q 045987 3 EVREENERLKKMLE 16 (510)
Q Consensus 3 ev~eEN~rLK~ML~ 16 (510)
++++||+|||.||+
T Consensus 95 ~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 95 NLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHhc
No 7
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=27.45 E-value=59 Score=30.82 Aligned_cols=26 Identities=35% Similarity=0.636 Sum_probs=16.0
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHH
Q 045987 2 GEVREENERLKKMLEQIEKDYKSLQL 27 (510)
Q Consensus 2 gev~eEN~rLK~ML~qI~kdY~sLQm 27 (510)
+.+++||.+|+.=|+-....|..||-
T Consensus 91 ~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 91 EKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666666653
No 8
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=27.28 E-value=70 Score=35.92 Aligned_cols=35 Identities=34% Similarity=0.527 Sum_probs=32.3
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q 045987 2 GEVREENERLKKMLEQIEKDYKSLQLRFFDILQKA 36 (510)
Q Consensus 2 gev~eEN~rLK~ML~qI~kdY~sLQm~f~~imQqq 36 (510)
.|-|.|++-|-.=|.+|..+|..||-|..+.||+.
T Consensus 407 qEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqK 441 (527)
T PF15066_consen 407 QESRNEKETLQLELKKIKANYVHLQERYMTEIQQK 441 (527)
T ss_pred HHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999985
No 9
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=27.02 E-value=20 Score=26.96 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=18.5
Q ss_pred CCCCcccccccccccCCCCCCCCc----cCCccccccccccCCCCEEEEEEeecCCC
Q 045987 177 LNDGCQWRKYGQKIRKRKPMYTLL----FLENYYKNVQRCAEDMSILITTYEGTHSH 229 (510)
Q Consensus 177 ~~DGy~WRKYGQK~IKGnp~PRsY----~gC~arKqVQR~~~D~~i~~tTYeG~HnH 229 (510)
+-|||.-+++... .|..+=|.- .+|+|+=.+. .++. .++.. .++|||
T Consensus 12 ~~~Gy~y~~~~~~--~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~~~~-~~~HnH 62 (62)
T PF04500_consen 12 VYDGYRYYFNKRN--DGKTYWRCSRRRSHGCRARLITD--AGDG-RVVRT-NGEHNH 62 (62)
T ss_dssp EETTEEEEEEEE---SS-EEEEEGGGTTS----EEEEE----TT-EEEE--S---SS
T ss_pred EECCeEEECcCCC--CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EEEEC-CCccCC
Confidence 3477776665555 333332221 4799987777 3333 33333 499998
No 10
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=23.63 E-value=1.1e+02 Score=26.57 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=17.6
Q ss_pred CchhhHHHHHHHHHHHHHHHhHH
Q 045987 1 MGEVREENERLKKMLEQIEKDYK 23 (510)
Q Consensus 1 Mgev~eEN~rLK~ML~qI~kdY~ 23 (510)
+.++.|||.|||+=|.++...-.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq 24 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQ 24 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999998887764433
No 11
>PF15058 Speriolin_N: Speriolin N terminus
Probab=23.08 E-value=56 Score=32.75 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=18.3
Q ss_pred CchhhHHHHHHHHHHHHHHHhH
Q 045987 1 MGEVREENERLKKMLEQIEKDY 22 (510)
Q Consensus 1 Mgev~eEN~rLK~ML~qI~kdY 22 (510)
|+|+-.||++||+.+.-|..++
T Consensus 14 ierLv~ENeeLKKlVrLirEN~ 35 (200)
T PF15058_consen 14 IERLVRENEELKKLVRLIRENH 35 (200)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH
Confidence 5788889999999998777765
No 12
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.43 E-value=96 Score=27.98 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHH
Q 045987 3 EVREENERLKKMLEQIEKDYKSLQL 27 (510)
Q Consensus 3 ev~eEN~rLK~ML~qI~kdY~sLQm 27 (510)
.+-+|-+.||..+..++..=..|+|
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554
No 13
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=21.29 E-value=1.3e+02 Score=35.82 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=28.7
Q ss_pred cCCccccccccccCCCCEEEEEEeecCCCCCCccc
Q 045987 201 FLENYYKNVQRCAEDMSILITTYEGTHSHPLPVSA 235 (510)
Q Consensus 201 ~gC~arKqVQR~~~D~~i~~tTYeG~HnH~~P~sa 235 (510)
.||+|+=.|.+. .|..-.++-++.+|||++-++.
T Consensus 159 tGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~ 192 (846)
T PLN03097 159 TDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQ 192 (846)
T ss_pred CCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCcc
Confidence 699999999875 4677999999999999987543
No 14
>PF03859 CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein []. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin-binding domain and ankyrins [].; GO: 0005516 calmodulin binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.24 E-value=35 Score=31.60 Aligned_cols=8 Identities=63% Similarity=1.398 Sum_probs=7.1
Q ss_pred CCCccccc
Q 045987 178 NDGCQWRK 185 (510)
Q Consensus 178 ~DGy~WRK 185 (510)
.|||.|||
T Consensus 52 kDG~~WrK 59 (118)
T PF03859_consen 52 KDGHNWRK 59 (118)
T ss_pred cccceeEE
Confidence 59999996
No 15
>PRK11677 hypothetical protein; Provisional
Probab=20.23 E-value=1.4e+02 Score=28.03 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 045987 10 RLKKMLEQIEKDYKSLQLRFF 30 (510)
Q Consensus 10 rLK~ML~qI~kdY~sLQm~f~ 30 (510)
+--+||+++.+||+.|.-|+-
T Consensus 58 ~TA~Ll~~L~~~Y~~Ly~HlA 78 (134)
T PRK11677 58 RSAELLDTMAKDYRQLYQHMA 78 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999993
Done!