Query 045987
Match_columns 510
No_of_seqs 218 out of 749
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:00:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 5E-30 1.7E-34 211.7 6.0 70 164-233 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.6E-29 5.4E-34 209.7 4.9 70 164-233 4-78 (78)
3 2zxx_A Geminin; coiled-coil, c 51.9 6.2 0.00021 33.0 1.8 16 3-18 52-67 (79)
4 1hjb_A Ccaat/enhancer binding 37.8 26 0.0009 29.4 3.6 29 2-30 46-74 (87)
5 3vjf_A WA20; protein design, d 29.7 75 0.0026 26.8 5.0 36 2-37 3-38 (102)
6 2c9l_Y EB1, zebra, BZLF1 trans 25.3 36 0.0012 26.9 2.2 14 5-18 35-48 (63)
7 1gu4_A CAAT/enhancer binding p 24.3 32 0.0011 28.3 1.8 28 2-29 46-73 (78)
8 2yy0_A C-MYC-binding protein; 22.8 73 0.0025 24.4 3.4 28 2-29 22-49 (53)
9 2j5u_A MREC protein; bacterial 20.7 22 0.00077 34.3 0.2 26 2-27 29-57 (255)
10 3vmx_A Voltage-gated hydrogen 20.2 51 0.0017 25.3 2.0 15 3-17 29-43 (48)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.96 E-value=5e-30 Score=211.72 Aligned_cols=70 Identities=40% Similarity=0.599 Sum_probs=67.8
Q ss_pred ceEEEeecCCCCCCCCCcccccccccccCCCCCCCCc-----cCCccccccccccCCCCEEEEEEeecCCCCCCc
Q 045987 164 ARVSVRARCDAPTLNDGCQWRKYGQKIRKRKPMYTLL-----FLENYYKNVQRCAEDMSILITTYEGTHSHPLPV 233 (510)
Q Consensus 164 ~Rv~vrt~s~~~~~~DGy~WRKYGQK~IKGnp~PRsY-----~gC~arKqVQR~~~D~~i~~tTYeG~HnH~~P~ 233 (510)
.||+|++.+++++++|||+|||||||.|||++|||+| .+|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 4899999999999999999999999999999999999 899999999999999999999999999999986
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.95 E-value=1.6e-29 Score=209.67 Aligned_cols=70 Identities=39% Similarity=0.618 Sum_probs=64.4
Q ss_pred ceEEEeecCCCCCCCCCcccccccccccCCCCCCCCc-----cCCccccccccccCCCCEEEEEEeecCCCCCCc
Q 045987 164 ARVSVRARCDAPTLNDGCQWRKYGQKIRKRKPMYTLL-----FLENYYKNVQRCAEDMSILITTYEGTHSHPLPV 233 (510)
Q Consensus 164 ~Rv~vrt~s~~~~~~DGy~WRKYGQK~IKGnp~PRsY-----~gC~arKqVQR~~~D~~i~~tTYeG~HnH~~P~ 233 (510)
.||+|++.+++++++|||+|||||||.|||++|||+| ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 3789999999999999999999999999999999999 899999999999999999999999999999884
No 3
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=51.93 E-value=6.2 Score=32.96 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHH
Q 045987 3 EVREENERLKKMLEQI 18 (510)
Q Consensus 3 ev~eEN~rLK~ML~qI 18 (510)
++++||+.|+.|++++
T Consensus 52 ~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 52 RLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4666777777777665
No 4
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.77 E-value=26 Score=29.40 Aligned_cols=29 Identities=38% Similarity=0.528 Sum_probs=24.7
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045987 2 GEVREENERLKKMLEQIEKDYKSLQLRFF 30 (510)
Q Consensus 2 gev~eEN~rLK~ML~qI~kdY~sLQm~f~ 30 (510)
.++.+||.+||.-|.++.+....|.--|.
T Consensus 46 ~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 46 LELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999988886654
No 5
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO bundle, rudimentary enzymatic activitie; 2.20A {Synthetic construct}
Probab=29.67 E-value=75 Score=26.79 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcC
Q 045987 2 GEVREENERLKKMLEQIEKDYKSLQLRFFDILQKAD 37 (510)
Q Consensus 2 gev~eEN~rLK~ML~qI~kdY~sLQm~f~~imQqq~ 37 (510)
|+++.--|.+|++|.|+.|+++.-|.-+.++-||-+
T Consensus 3 gklnklvehikellqqlnknwhrhqgnlhdmnqqme 38 (102)
T 3vjf_A 3 GKLNKLVEHIKELLQQLNKNWHRHQGNLHDMNQQME 38 (102)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHH
Confidence 567777788999999999999999999999887743
No 6
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=25.30 E-value=36 Score=26.89 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHH
Q 045987 5 REENERLKKMLEQI 18 (510)
Q Consensus 5 ~eEN~rLK~ML~qI 18 (510)
-+||+|||-++.|+
T Consensus 35 s~en~rlr~l~kqm 48 (63)
T 2c9l_Y 35 SSENDRLRLLLKQM 48 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHh
Confidence 47999999988775
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.34 E-value=32 Score=28.29 Aligned_cols=28 Identities=39% Similarity=0.586 Sum_probs=22.8
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 045987 2 GEVREENERLKKMLEQIEKDYKSLQLRF 29 (510)
Q Consensus 2 gev~eEN~rLK~ML~qI~kdY~sLQm~f 29 (510)
.++..||.+|+.-|.++.+....|.--|
T Consensus 46 ~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 46 LELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999988888777444
No 8
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.75 E-value=73 Score=24.35 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=22.1
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 045987 2 GEVREENERLKKMLEQIEKDYKSLQLRF 29 (510)
Q Consensus 2 gev~eEN~rLK~ML~qI~kdY~sLQm~f 29 (510)
+.++.||+.||.-+..+.+.-..|+.++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888777766
No 9
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=20.68 E-value=22 Score=34.33 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=16.2
Q ss_pred chhhHHHHHHHH---HHHHHHHhHHHHHH
Q 045987 2 GEVREENERLKK---MLEQIEKDYKSLQL 27 (510)
Q Consensus 2 gev~eEN~rLK~---ML~qI~kdY~sLQm 27 (510)
.++++||.+|+. -|.++......|+.
T Consensus 29 ~~Lk~e~~~l~~~~~~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 29 QHLKERLEELAQLESEVADLKKENKDLKE 57 (255)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666663 35677777766664
No 10
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=20.17 E-value=51 Score=25.29 Aligned_cols=15 Identities=53% Similarity=0.707 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHH
Q 045987 3 EVREENERLKKMLEQ 17 (510)
Q Consensus 3 ev~eEN~rLK~ML~q 17 (510)
++..|++||+.+|.+
T Consensus 29 ~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 29 EKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567899999999865
Done!