BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045990
         (298 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical
           Protein From Arabidopsis Thaliana
          Length = 89

 Score = 32.0 bits (71), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)

Query: 153 IEARWEELVGEMPLKIAYPAIESHEWRIV-------TGCDPKNTRWSYH 194
           IEA+++E+  + P K+ +   E HE  +          C+ + T WSYH
Sbjct: 15  IEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYH 63


>pdb|2HQL|A Chain A, Crystal Structure Of A Small Single-Stranded Dna Binding
           Protein From Mycoplasma Pneumoniae
 pdb|2HQL|B Chain B, Crystal Structure Of A Small Single-Stranded Dna Binding
           Protein From Mycoplasma Pneumoniae
 pdb|2HQL|C Chain C, Crystal Structure Of A Small Single-Stranded Dna Binding
           Protein From Mycoplasma Pneumoniae
 pdb|2HQL|D Chain D, Crystal Structure Of A Small Single-Stranded Dna Binding
           Protein From Mycoplasma Pneumoniae
 pdb|2HQL|E Chain E, Crystal Structure Of A Small Single-Stranded Dna Binding
           Protein From Mycoplasma Pneumoniae
 pdb|2HQL|F Chain F, Crystal Structure Of A Small Single-Stranded Dna Binding
           Protein From Mycoplasma Pneumoniae
          Length = 110

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 229 RMLKDCWPEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKP 288
           R+  D +  Y +G+L   + K  +KY+T SI G L  +  LE  S +   ++E  K   P
Sbjct: 42  RLFTDYYVIYANGQLAYELEKHTKKYKTISIEGIL--RTYLERKSEIWKTTIEIVKIFNP 99


>pdb|3FYS|A Chain A, Crystal Structure Of Degv, A Fatty Acid Binding Protein
           From Bacillus Subtilis
          Length = 315

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 11  CENLGIYGYPIEIQALF--FMALRCALSLLKHDAEGKEFIERIVKRLHALSYHMRSYFWL 68
            +N+ +Y +  EI  L   F AL+ A  L+K+ A   E    I+K L  +   +R+YF +
Sbjct: 140 VDNIDVYPFDSEISCLAQGFYALKAA-ELIKNGASSPE---DIIKELEEMKKTVRAYFMV 195

Query: 69  D 69
           D
Sbjct: 196 D 196


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,653,206
Number of Sequences: 62578
Number of extensions: 406470
Number of successful extensions: 1207
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 3
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)