Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>045992
MGSLHKEITSTMDLDVPLVVTSEGVPTVTTEDGFVEFMKSTVLKRQELDETFYVLDLGHH
FSLLSLISNLPMVHPYYAVKGKLDKIRMWHSKCELSIRIKSPVDGGARTHICTSASSNNQ
TTYKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELK
FSVRIQAHTACEYENEVILLHGFASEVTEEIKK

High Scoring Gene Products

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045992
        (213 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

DICTYBASE|DDB_G0281109 - symbol:odc "group IV decarboxyla...    91  0.00017   3
UNIPROTKB|F1LXG1 - symbol:F1LXG1 "Uncharacterized protein...    91  0.00045   1


>DICTYBASE|DDB_G0281109 [details] [associations]
            symbol:odc "group IV decarboxylase" species:44689
            "Dictyostelium discoideum" [GO:0006596 "polyamine biosynthetic
            process" evidence=IEA;ISS] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0004586 "ornithine decarboxylase activity"
            evidence=IEA;ISS] [GO:0016831 "carboxy-lyase activity"
            evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
            [GO:0033387 "putrescine biosynthetic process from ornithine"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000183 InterPro:IPR002433 InterPro:IPR009006
            InterPro:IPR022643 InterPro:IPR022644 Pfam:PF00278 Pfam:PF02784
            PRINTS:PR01179 PRINTS:PR01182 UniPathway:UPA00535
            dictyBase:DDB_G0281109 Prosite:PS00879 Prosite:PS00878
            GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0006596
            eggNOG:COG0019 Gene3D:2.40.37.10 InterPro:IPR022653 SUPFAM:SSF50621
            KO:K01581 GO:GO:0004586 GO:GO:0033387 RefSeq:XP_640823.1
            HSSP:P07805 ProteinModelPortal:Q54UF3 STRING:Q54UF3 PRIDE:Q54UF3
            EnsemblProtists:DDB0237755 GeneID:8622878 KEGG:ddi:DDB_G0281109
            OMA:YDHATIT ProtClustDB:CLSZ2430568 Uniprot:Q54UF3
        Length = 461

 Score = 91 (37.1 bits), Expect = 0.00017, Sum P(3) = 0.00017
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query:   117 SNNQTTYKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTL 163
             S  Q T   T+F PTC ++  V     +PEL++ DWL F D  A T+
Sbjct:   388 STKQPT-PCTLFGPTCDSIDVVLKDTQIPELKIGDWLYFQDMGAYTI 433

 Score = 64 (27.6 bits), Expect = 0.00017, Sum P(3) = 0.00017
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query:    35 VEFMKSTVLKRQELDETFYVLDLGHHFSLLSL-ISNLPMVHPYYAVK 80
             ++ + +++L + + D  F+V D+G         + NLP V PYYAVK
Sbjct:    71 IQELITSLLDKTDRD-AFFVADVGVIIKQWQKWVKNLPNVKPYYAVK 116

 Score = 35 (17.4 bits), Expect = 0.00017, Sum P(3) = 0.00017
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query:    82 KLDKIRMWHSKCELSIRIKSPVD 104
             +L+KI  +  + EL +RI +P D
Sbjct:   185 ELEKIEKFFPEAELVLRI-APDD 206


>UNIPROTKB|F1LXG1 [details] [associations]
            symbol:F1LXG1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003824 "catalytic activity" evidence=IEA]
            [GO:0006596 "polyamine biosynthetic process" evidence=IEA]
            InterPro:IPR002433 InterPro:IPR009006 InterPro:IPR022643
            Pfam:PF00278 PRINTS:PR01182 GO:GO:0003824 GO:GO:0006596
            Gene3D:2.40.37.10 SUPFAM:SSF50621 IPI:IPI00778698
            Ensembl:ENSRNOT00000037995 Uniprot:F1LXG1
        Length = 115

 Score = 91 (37.1 bits), Expect = 0.00045, P = 0.00045
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query:   123 YKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTL 163
             Y S+++RPTC  + ++     LPE+ V DW++F +  A T+
Sbjct:    71 YSSSIWRPTCDGLDRIVERCSLPEMHVGDWMLFENMGAYTV 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      213       213   0.00084  112 3  11 22  0.50    32
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.79u 0.17s 19.96t   Elapsed:  00:00:01
  Total cpu time:  19.79u 0.17s 19.96t   Elapsed:  00:00:01
  Start:  Fri May 10 13:45:30 2013   End:  Fri May 10 13:45:31 2013

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