Query 045992
Match_columns 213
No_of_seqs 238 out of 1045
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:06:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 7odc_A Protein (ornithine deca 99.9 8.2E-26 2.8E-30 207.6 14.9 61 121-182 349-409 (424)
2 3mt1_A Putative carboxynorsper 99.9 5.1E-23 1.8E-27 185.2 12.4 61 120-181 283-343 (365)
3 2oo0_A ODC, ornithine decarbox 99.9 5.7E-22 1.9E-26 184.7 16.3 59 123-182 361-419 (471)
4 3n29_A Carboxynorspermidine de 99.9 5.2E-22 1.8E-26 182.9 13.1 62 120-182 337-398 (418)
5 3vab_A Diaminopimelate decarbo 99.9 1.4E-21 4.6E-26 180.7 13.4 62 120-182 356-417 (443)
6 3btn_A Antizyme inhibitor 1; T 99.9 2.3E-21 7.8E-26 179.0 14.5 59 123-182 349-407 (448)
7 1f3t_A ODC, ornithine decarbox 99.9 6.1E-21 2.1E-25 174.4 14.1 58 123-181 351-408 (425)
8 3n2b_A Diaminopimelate decarbo 99.8 1.2E-20 4.2E-25 174.2 14.0 61 120-182 356-416 (441)
9 2nva_A Arginine decarboxylase, 99.8 5.7E-19 1.9E-23 157.5 13.8 58 123-181 315-372 (372)
10 2plj_A Lysine/ornithine decarb 99.7 3.4E-18 1.1E-22 156.4 10.4 66 122-189 349-414 (419)
11 2qgh_A Diaminopimelate decarbo 99.7 1.7E-17 5.8E-22 151.1 10.3 60 122-182 339-398 (425)
12 2p3e_A Diaminopimelate decarbo 99.7 3E-16 1E-20 141.8 13.5 58 123-181 339-396 (420)
13 2j66_A BTRK, decarboxylase; bu 99.5 8E-15 2.7E-19 132.9 6.0 60 123-182 337-396 (428)
14 1knw_A Diaminopimelate decarbo 99.5 2.1E-14 7.2E-19 131.1 6.2 59 123-182 333-398 (425)
15 2o0t_A Diaminopimelate decarbo 99.5 3.2E-14 1.1E-18 131.5 6.2 60 122-182 367-427 (467)
16 1twi_A Diaminopimelate decarbo 99.4 6.1E-14 2.1E-18 127.4 5.4 59 123-182 349-407 (434)
17 2yxx_A Diaminopimelate decarbo 99.4 7.4E-14 2.5E-18 125.0 5.8 59 122-181 304-362 (386)
18 3nzp_A Arginine decarboxylase; 97.7 3.9E-05 1.3E-09 74.5 6.0 49 31-81 28-87 (619)
19 2yxx_A Diaminopimelate decarbo 97.7 8.1E-05 2.8E-09 66.3 7.3 33 49-81 12-47 (386)
20 2o0t_A Diaminopimelate decarbo 97.6 7.7E-05 2.6E-09 68.8 6.5 45 30-81 29-75 (467)
21 2j66_A BTRK, decarboxylase; bu 97.5 7.8E-05 2.7E-09 67.3 5.5 34 48-81 15-50 (428)
22 1knw_A Diaminopimelate decarbo 97.1 0.00094 3.2E-08 60.7 6.8 30 49-81 25-55 (425)
23 1twi_A Diaminopimelate decarbo 96.8 0.0015 5E-08 59.1 5.5 45 30-81 17-70 (434)
24 1xfc_A Alanine racemase; alpha 96.7 0.00019 6.4E-09 64.2 -1.0 58 123-182 309-369 (384)
25 3nzq_A ADC, biosynthetic argin 96.4 0.0016 5.3E-08 63.9 3.2 48 32-81 70-128 (666)
26 3n2o_A ADC, biosynthetic argin 96.2 0.0023 7.9E-08 62.5 3.1 49 31-81 47-106 (648)
27 2dy3_A Alanine racemase; alpha 95.9 0.0011 3.8E-08 58.4 -0.5 55 123-181 294-350 (361)
28 1vfs_A Alanine racemase; TIM-b 95.8 0.0011 3.6E-08 59.4 -1.1 57 123-182 308-366 (386)
29 2dy3_A Alanine racemase; alpha 95.4 0.013 4.4E-07 51.6 4.6 33 49-81 2-35 (361)
30 2vd8_A Alanine racemase; pyrid 95.3 0.0015 5.2E-08 58.6 -1.8 56 123-181 309-365 (391)
31 1bd0_A Alanine racemase; isome 94.6 0.0032 1.1E-07 56.6 -1.7 56 123-181 302-358 (388)
32 3co8_A Alanine racemase; prote 94.2 0.0046 1.6E-07 55.2 -1.7 57 123-182 304-361 (380)
33 1vfs_A Alanine racemase; TIM-b 93.7 0.085 2.9E-06 47.0 5.5 34 48-81 5-39 (386)
34 3anu_A D-serine dehydratase; P 93.4 0.055 1.9E-06 47.6 3.8 35 47-81 9-46 (376)
35 1xfc_A Alanine racemase; alpha 93.3 0.072 2.5E-06 47.3 4.5 35 47-81 8-43 (384)
36 1rcq_A Catabolic alanine racem 91.6 0.029 9.9E-07 49.3 -0.4 55 123-182 291-346 (357)
37 1bd0_A Alanine racemase; isome 91.3 0.24 8.3E-06 44.3 5.3 33 49-81 6-40 (388)
38 2vd8_A Alanine racemase; pyrid 90.8 0.29 1E-05 43.7 5.3 33 49-81 10-44 (391)
39 3co8_A Alanine racemase; prote 88.8 0.38 1.3E-05 42.8 4.4 33 49-81 8-41 (380)
40 2rjg_A Alanine racemase; alpha 82.3 0.19 6.4E-06 44.9 -0.9 53 123-180 313-366 (379)
41 2rjg_A Alanine racemase; alpha 82.3 0.83 2.8E-05 40.7 3.2 33 49-81 22-55 (379)
42 3nzp_A Arginine decarboxylase; 82.1 3 0.0001 40.4 7.3 66 117-183 468-540 (619)
43 3llx_A Predicted amino acid al 75.6 2.7 9.4E-05 37.1 4.5 35 47-81 11-48 (376)
44 3nzq_A ADC, biosynthetic argin 74.9 6.4 0.00022 38.5 7.2 66 117-183 513-589 (666)
45 3kw3_A Alanine racemase; niaid 69.1 5.2 0.00018 36.0 4.8 35 47-81 17-52 (376)
46 3n2o_A ADC, biosynthetic argin 68.8 5.1 0.00017 39.1 4.9 66 118-184 497-573 (648)
47 3e5p_A Alanine racemase; ALR, 67.3 6.5 0.00022 35.2 5.0 34 48-81 6-41 (371)
48 1rcq_A Catabolic alanine racem 60.4 9.3 0.00032 33.2 4.6 31 50-81 3-34 (357)
49 3gwq_A D-serine deaminase; str 55.6 5 0.00017 36.5 2.0 35 47-81 43-80 (426)
50 4ecl_A Serine racemase, vantg; 53.4 18 0.00062 32.2 5.3 33 49-81 5-39 (374)
51 3mub_A Alanine racemase; alpha 45.5 27 0.00093 31.1 5.2 34 48-81 6-41 (367)
52 2z1c_A Hydrogenase expression/ 32.1 23 0.00078 25.3 2.0 15 143-157 32-46 (75)
53 1ghh_A DINI, DNA-damage-induci 23.5 53 0.0018 23.9 2.7 24 78-101 20-46 (81)
54 3bsu_A Ribonuclease H1, RNAse 23.2 42 0.0014 22.2 1.9 21 74-94 3-34 (53)
55 4a3q_A Alanine racemase 1; iso 22.8 88 0.003 27.9 4.6 33 48-81 6-40 (382)
56 2ot2_A Hydrogenase isoenzymes 22.1 40 0.0014 24.9 1.8 13 145-157 40-52 (90)
57 4fbl_A LIPS lipolytic enzyme; 21.1 27 0.00094 28.1 0.8 9 197-205 54-62 (281)
58 3d3r_A Hydrogenase assembly ch 20.7 44 0.0015 25.4 1.8 15 143-157 55-70 (103)
No 1
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=99.93 E-value=8.2e-26 Score=207.58 Aligned_cols=61 Identities=25% Similarity=0.501 Sum_probs=57.3
Q ss_pred ceeeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEE
Q 045992 121 TTYKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 121 ~~~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
+.++++||||||++.|++.+++.||++++||||+|.+|||||++|++ +||++++|+|+++.
T Consensus 349 ~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~s~ss-~fN~~~~p~~v~~~ 409 (424)
T 7odc_A 349 KYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAAS-TFNGFQRPNIYYVM 409 (424)
T ss_dssp CEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCC-CGGGCCCCEEEEEE
T ss_pred CeeeEEEECCCCCCCCEecccccCCCCCCCCEEEECCCCCCchhhcc-CCCCCCCCeEEEEE
Confidence 45789999999999999999999999999999999999999999997 99999999988764
No 2
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=99.89 E-value=5.1e-23 Score=185.25 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=57.1
Q ss_pred CceeeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEE
Q 045992 120 QTTYKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKF 181 (213)
Q Consensus 120 ~~~~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~ 181 (213)
.+..+++|+||+|++.|++.++..+|++++||||+|.+|||||++|++ +||++|+|+|+++
T Consensus 283 ~~~~~~~v~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~~~~s-~fn~~~~p~~v~v 343 (365)
T 3mt1_A 283 EGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN-WFNGVKMPAIAIR 343 (365)
T ss_dssp CSSEEEEEECSSCCSSCEEEEEEESSCCCTTCEEEESSCCTTSTTSCC-CGGGCCCCEEEEE
T ss_pred CCceEEEEEeCCCCccCEEcccccCCCCCCCCEEEEecccchhhhhcc-cccCCCCCcEEEE
Confidence 356789999999999999999888999999999999999999999996 9999999999886
No 3
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=99.88 E-value=5.7e-22 Score=184.68 Aligned_cols=59 Identities=25% Similarity=0.534 Sum_probs=55.7
Q ss_pred eeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
..++|+||+|++.|++..++.||++++||||+|.++||||++|++ +||++++|.|+++.
T Consensus 361 ~~~~I~G~~C~s~D~l~~d~~lp~l~~GD~l~~~~~GAY~~s~~s-~fN~~~~p~~v~~~ 419 (471)
T 2oo0_A 361 YSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAAS-TFNGFQRPTIYYVM 419 (471)
T ss_dssp EEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCC-CGGGCCCCEEEEEE
T ss_pred eEEEEECCCCCCCCEEeeccCCCCCCCCCEEEEeCCCcchhhhhc-cccCCCCCeEEEEe
Confidence 678999999999999999999999999999999999999999987 99999999988763
No 4
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=99.87 E-value=5.2e-22 Score=182.91 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=57.3
Q ss_pred CceeeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEE
Q 045992 120 QTTYKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 120 ~~~~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
.+..+++||||+|++.|++.++..+|++++||||+|.+|||||++|++ +||++|+|+|++++
T Consensus 337 ~~~~~~~v~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~s~ss-~fN~~~~p~~v~v~ 398 (418)
T 3n29_A 337 ENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNT-TFNGIRLPNLMLLD 398 (418)
T ss_dssp TTCEEEEEECSSSCTTCEEEEEEESSCCCTTCEEEESSCSSSSGGGCC-CGGGCCCCEEEEEC
T ss_pred CCceEEEEEcCCCCCCCEEeecccCCCCCCCCEEEEeCccchhHHHhc-cccCCCCCCEEEEE
Confidence 346789999999999999998888889999999999999999999996 99999999999873
No 5
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=99.86 E-value=1.4e-21 Score=180.69 Aligned_cols=62 Identities=10% Similarity=0.090 Sum_probs=58.2
Q ss_pred CceeeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEE
Q 045992 120 QTTYKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 120 ~~~~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
.+..+++|+||+|++.|++.+++.||++++||||+|.+|||||++|++ +||++|+|+|++++
T Consensus 356 ~~~~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss-~fN~~~~p~~v~v~ 417 (443)
T 3vab_A 356 APRIRADFVGPVCETGDYLGLDREVAKPAPGDLIAICTTGAYGAVLSS-TYNSRLLIPEVLGD 417 (443)
T ss_dssp SCEEEEEEECSSSSTTCEEEEEEEEECCCTTCEEEEESCTTTTGGGCC-CGGGCCCCCEEEEE
T ss_pred CCceEEEEEccCCCCCCEEeeccCcCCCCCCCEEEEeCCCcCchhhhc-cccCCCCCcEEEEE
Confidence 356789999999999999999999999999999999999999999997 99999999999874
No 6
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=99.86 E-value=2.3e-21 Score=178.96 Aligned_cols=59 Identities=24% Similarity=0.533 Sum_probs=55.4
Q ss_pred eeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
..++|+||+|++.|++..++.||++++||||+|.++||||++|++ +||++++|.|+++.
T Consensus 349 ~~~~v~G~~C~s~D~l~~d~~lp~l~~GD~l~~~~~GAY~~~~~s-~fN~~~~p~~v~~~ 407 (448)
T 3btn_A 349 FTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPS-AFNDFQRPAIYFMM 407 (448)
T ss_dssp EEEEEECTTCSTTCEEEEEEEEECCCTTCEEEESSCCSSCCCCCC-GGGTTCCCEEEEEE
T ss_pred eEEEEECCCCCCCCEEeeccccCCCCCCCEEEEcCCCCCchhhcc-cccCCCCCeEEEEE
Confidence 568999999999999999999999999999999999999999986 99999999988763
No 7
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=99.85 E-value=6.1e-21 Score=174.37 Aligned_cols=58 Identities=31% Similarity=0.539 Sum_probs=53.7
Q ss_pred eeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKF 181 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~ 181 (213)
..++|+||+|++.|++..++.||++++||||+|.++||||++|++ +||++++|.++++
T Consensus 351 ~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~s~~s-~fn~~~~p~v~~~ 408 (425)
T 1f3t_A 351 YPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTS-SFNGFQSPTIYYV 408 (425)
T ss_dssp EEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCC-CGGGCCCCEEEEE
T ss_pred eEEEEEcCCcCCCCEecccccCCCCCCCCEEEEcCCCCCchhhcc-cccCCCCCEEEEE
Confidence 568999999999999999999999999999999999999999986 9999999975543
No 8
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=99.84 E-value=1.2e-20 Score=174.17 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=56.7
Q ss_pred CceeeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEE
Q 045992 120 QTTYKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 120 ~~~~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
.+..+++|+||+|++.|++.+++.| ++++||||+|.+|||||++|++ +||++|+|+|++++
T Consensus 356 ~~~~~~~v~Gp~C~s~D~l~~~~~l-~l~~GD~l~~~~~GAY~~~~ss-~fN~~~~p~~v~v~ 416 (441)
T 3n2b_A 356 GEAQTYDLVGPVCETSDFLGKDRDL-VLQEGDLLAVRSSGAYGFTMSS-NYNTRPRVAEVMVD 416 (441)
T ss_dssp SCCEEEEEECSSSSTTCEEEEEEEE-CCCTTCEEEESSCSSSSGGGCB-CTTTCCCCEEEEEE
T ss_pred CCceeEEEECCcCCCCCEEeecccc-CCCCCCEEEEeCCCcCchhhhc-cccCCCCCcEEEEE
Confidence 3467899999999999999999999 8999999999999999999997 99999999999874
No 9
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=99.79 E-value=5.7e-19 Score=157.53 Aligned_cols=58 Identities=26% Similarity=0.321 Sum_probs=55.0
Q ss_pred eeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKF 181 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~ 181 (213)
..+.|+||+|++.|++..++.||++++||||+|.++||||.++++ +||++++|.|+++
T Consensus 315 ~~~~i~G~~C~~~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~~-~fn~~~~p~~~~~ 372 (372)
T 2nva_A 315 VPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTT-SFNGFGEYDVYYI 372 (372)
T ss_dssp EEEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCCSSSGGGCC-CGGGCCCEEEEEC
T ss_pred ceEEEEeCCcCCCCEEcccccCCCCCCCCEEEEcCCCCCchhhhc-cccCCCCCcEEeC
Confidence 578999999999999999999999999999999999999999998 9999999998763
No 10
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=99.75 E-value=3.4e-18 Score=156.41 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=57.8
Q ss_pred eeeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEEEEecccc
Q 045992 122 TYKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFSVRIQAHT 189 (213)
Q Consensus 122 ~~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~~~~~~~~ 189 (213)
...++|+||+|++.|++..++.||++++||||+|.++||||.++++ +||++++|.|++++=. |+|+
T Consensus 349 ~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s-~fn~~~~p~~v~~~~~-~~~~ 414 (419)
T 2plj_A 349 LIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTSATAT-DFNFFKRAQTIALNEF-VASS 414 (419)
T ss_dssp EEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCSSSSGGGCB-CGGGCCCCEEEEECCC-C---
T ss_pred ceeEEEEcCCcCCCCeeeecccCCCCCCCCEEEEeCCCCchhhhhh-hhcCCCCCeEEEEecc-hhhh
Confidence 3568899999999999999999999999999999999999999997 9999999999887644 5443
No 11
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=99.72 E-value=1.7e-17 Score=151.14 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=56.3
Q ss_pred eeeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEE
Q 045992 122 TYKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 122 ~~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
...++|+||+|++.|++..++.||++++||||+|.++||||++|++ +||++++|.|++++
T Consensus 339 ~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s-~fn~~~~p~~v~~~ 398 (425)
T 2qgh_A 339 ISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMAS-QYNSRPKLLELALE 398 (425)
T ss_dssp CEEEEEECSSSSTTCEEEEEEEECCCCTTCEEEECSCSSSSGGGCC-CTTTCCCCEEEEEC
T ss_pred ceEEEEECCCcCCCcEecccccCCCCCCCCEEEEeCCCCchhhhhc-cccCCCCCeEEEEE
Confidence 3578999999999999999999999999999999999999999997 99999999999764
No 12
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=99.68 E-value=3e-16 Score=141.77 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=55.2
Q ss_pred eeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKF 181 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~ 181 (213)
..+.|+||+|++.|.+..++.+|++++||||+|.++|||+.++++ +||++++|.|+++
T Consensus 339 ~~~~i~G~~Cms~D~~~~d~~lp~~~~GD~v~~~~~gAY~~~~~s-~fn~~~~p~~~~~ 396 (420)
T 2p3e_A 339 VVADIVGPICETGDFLALDREIEEVQRGEYLAVLSAGAYGFAMSS-HYNMRPRAAEVLV 396 (420)
T ss_dssp CEEEEECSSSSTTCEEEEEEECCCCCTTCEEEECSCTTTTGGGCB-CGGGCCCCEEEEE
T ss_pred eeEEEEccCCCCccEEeecccCCCCCCCCEEEEeCCCcchhhhhh-hhhcCCCCeEEEE
Confidence 568899999999999999999999999999999999999999997 9999999999886
No 13
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=99.52 E-value=8e-15 Score=132.95 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=56.7
Q ss_pred eeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
..++|+||+|+|.|++..++.||++++||||+|.++||||.+|++.+||++++|.|++++
T Consensus 337 ~~~~i~G~~C~s~D~l~~d~~lp~~~~GD~l~~~~~GAY~~~~~s~~fn~~~~p~~v~~~ 396 (428)
T 2j66_A 337 EKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKR 396 (428)
T ss_dssp EEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGSCTTGGGCCCCEEEEEE
T ss_pred ceEEEEcCCCCCCcEEEecccCCCCCCCCEEEEeCCCcchHHhhhhhhhCCCCCeEEEEE
Confidence 568899999999999999999999999999999999999999998899999999998874
No 14
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=99.49 E-value=2.1e-14 Score=131.11 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=56.1
Q ss_pred eeeeEEccCCCCCCccccc-------cCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAG-------HPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~-------~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
..++|+||+|++.|++..+ +.||++++||||+|.++||||++|++ +||++++|.|++++
T Consensus 333 ~~~~v~G~~C~s~D~~~~d~~~~~~~~~lp~~~~GD~l~~~~~GAY~~~~~s-~fn~~~~p~~v~~~ 398 (425)
T 1knw_A 333 VETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSS-NYNSRPLLPEVLFD 398 (425)
T ss_dssp EEEEEECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSSSGGGCC-CTTTCCCCCEEEEE
T ss_pred eeEEEECCCCCCCCEEeecCCCCccceeCCCCCCCCEEEEeCCCcchHHHHh-HhhCCCCCeEEEEe
Confidence 6789999999999999999 89999999999999999999999998 99999999998864
No 15
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=99.47 E-value=3.2e-14 Score=131.49 Aligned_cols=60 Identities=8% Similarity=0.150 Sum_probs=56.3
Q ss_pred eeeeeEEccCCCCCCccccccCCC-CCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEE
Q 045992 122 TYKSTVFRPTCTAVGKVFAGHPLP-ELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 122 ~~~ssI~GPtCds~D~i~~~~~LP-el~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
...++|+||+|++.|++..++.|| ++++||||+|.++||||.+|++ +||++++|.|++++
T Consensus 367 ~~~~~v~G~~C~s~D~~~~d~~lp~~l~~GD~l~~~~~GAY~~~~~s-~fn~~~~p~~v~v~ 427 (467)
T 2o0t_A 367 PVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSS-RYNMVGRPAVVAVH 427 (467)
T ss_dssp EEEEEEECSSSSTTCEEEEEEEEETTCCTTCEEEESCCSSSSSTTCB-CGGGCCCCEEEEEE
T ss_pred ceeEEEECCCcCCCCEEEeccccCCCCCCCCEEEEcCCCcchHHHhh-HhhCCCCCcEEEEe
Confidence 356899999999999999999999 9999999999999999999997 99999999999874
No 16
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=99.44 E-value=6.1e-14 Score=127.35 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=55.8
Q ss_pred eeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
..+.|+||+|++.|++..++.||++++||||+|.++||||++|++ +||++++|.|++++
T Consensus 349 ~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s-~fn~~~~p~~v~~~ 407 (434)
T 1twi_A 349 EVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMAN-NYNARGRPRMVLTS 407 (434)
T ss_dssp EEEEEECSSSCTTCEEEEEEEEECCCTTCEEEEECCSSSSGGGCB-CTTTCCCCEEEEEE
T ss_pred ceEEEECCCCCCCCEEeeccCCCCCCCCCEEEEeCCCcchHhhhh-hhhCCCCCeEEEEE
Confidence 568999999999999999999999999999999999999999997 99999999998864
No 17
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=99.43 E-value=7.4e-14 Score=125.03 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=55.9
Q ss_pred eeeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEE
Q 045992 122 TYKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKF 181 (213)
Q Consensus 122 ~~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~ 181 (213)
...+.|+||+|++.|++..++.+|++++||||+|.++||||.++++ +||++++|.|+++
T Consensus 304 ~~~~~i~G~~C~~~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s-~fn~~~~p~~~~~ 362 (386)
T 2yxx_A 304 EMRADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSN-NYNSTTRPAEVLV 362 (386)
T ss_dssp SEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGCC-CTTTCCCCEEEEE
T ss_pred ceEEEEEcCCCCCCCEEeeccccCCCCCCCEEEEeCCCCchHHHhh-hhhCCCCCcEEEE
Confidence 3568999999999999999999999999999999999999999997 9999999999986
No 18
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=97.69 E-value=3.9e-05 Score=74.46 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=43.9
Q ss_pred cccHHHHHHHHhhhcCCCCCcEEEeehHHHHHHhh-hhhcCCC----------ccceeeccc
Q 045992 31 EDGFVEFMKSTVLKRQELDETFYVLDLGHHFSLLS-LISNLPM----------VHPYYAVKG 81 (213)
Q Consensus 31 ~~~~~~~I~~ii~~~~~~~~pF~V~DL~~V~~~~~-W~~~LPr----------V~PfYAVKC 81 (213)
+.++.++++++... +-..||||.|++.|.++++ |++.+|+ ++++|||||
T Consensus 28 ~v~l~~l~~~l~~~--~~gTP~yV~D~d~L~~ni~~l~~af~~a~~~~~y~g~~~i~YAVKA 87 (619)
T 3nzp_A 28 KPAIIDIVKELRDD--GYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKV 87 (619)
T ss_dssp CCBHHHHHHHHHHT--TCCSCEEEECHHHHHHHHHHHHHHHHHHHHHTTCCSCEEEEEEGGG
T ss_pred CCCHHHHHHHHHhc--CCCCCEEEEcHHHHHHHHHHHHHHHHHHhhhcccCCCEEEEEEEec
Confidence 37899999997664 6789999999999999999 9999985 799999999
No 19
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=97.67 E-value=8.1e-05 Score=66.34 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=31.2
Q ss_pred CCcEEEeehHHHHHHhh-hhhcCCC--ccceeeccc
Q 045992 49 DETFYVLDLGHHFSLLS-LISNLPM--VHPYYAVKG 81 (213)
Q Consensus 49 ~~pF~V~DL~~V~~~~~-W~~~LPr--V~PfYAVKC 81 (213)
+.|||++|++.|.+.++ |++.+|+ ++++|||||
T Consensus 12 ~tP~~vidl~~l~~N~~~l~~~~~~~~~~i~~avKA 47 (386)
T 2yxx_A 12 GTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKA 47 (386)
T ss_dssp CSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGG
T ss_pred CCCEEEEEHHHHHHHHHHHHHhhccCCceEEEEEee
Confidence 58999999999999999 9999995 599999999
No 20
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=97.61 E-value=7.7e-05 Score=68.78 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=38.5
Q ss_pred CcccHHHHHHHHhhhcCCCCCcEEEeehHHHHHHhh-hhhcC-CCccceeeccc
Q 045992 30 TEDGFVEFMKSTVLKRQELDETFYVLDLGHHFSLLS-LISNL-PMVHPYYAVKG 81 (213)
Q Consensus 30 ~~~~~~~~I~~ii~~~~~~~~pF~V~DL~~V~~~~~-W~~~L-PrV~PfYAVKC 81 (213)
.+..+.++++++ ..||||+|++.|.++++ |++.+ |+++++|||||
T Consensus 29 ~~~~l~~l~~~~-------~tP~~vid~~~l~~n~~~l~~~~~~~~~i~~avKa 75 (467)
T 2o0t_A 29 AGIPLTQLAQEY-------GTPLFVIDEDDFRSRCRETAAAFGSGANVHYAAKA 75 (467)
T ss_dssp TTEEHHHHHHHH-------CSSEEEEEHHHHHHHHHHHHHHTSSGGGBEEEGGG
T ss_pred CCccHHHHHhhc-------CCCEEEEeHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 455666665543 48999999999999999 99999 79999999999
No 21
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=97.55 E-value=7.8e-05 Score=67.35 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=32.3
Q ss_pred CCCcEEEeehHHHHHHhh-hhhcCC-Cccceeeccc
Q 045992 48 LDETFYVLDLGHHFSLLS-LISNLP-MVHPYYAVKG 81 (213)
Q Consensus 48 ~~~pF~V~DL~~V~~~~~-W~~~LP-rV~PfYAVKC 81 (213)
...||||+|++.|.++++ |++.+| +++++|||||
T Consensus 15 ~~tP~~vid~~~l~~n~~~l~~~~~~~~~i~~avKa 50 (428)
T 2j66_A 15 FETPFYLYDGDFIEAHYRQLRSRTNPAIQFYLSLKA 50 (428)
T ss_dssp SCSSEEEEEHHHHHHHHHHHHHTSCTTEEEEEEGGG
T ss_pred hCCCEEEEeHHHHHHHHHHHHHhcCCCcEEEEEeee
Confidence 358999999999999999 999998 9999999999
No 22
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=97.05 E-value=0.00094 Score=60.71 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=28.7
Q ss_pred CCcEEEeehHHHHHHhh-hhhcCCCccceeeccc
Q 045992 49 DETFYVLDLGHHFSLLS-LISNLPMVHPYYAVKG 81 (213)
Q Consensus 49 ~~pF~V~DL~~V~~~~~-W~~~LPrV~PfYAVKC 81 (213)
..||||+|++.|.++++ |+ .+| +.+|||||
T Consensus 25 ~tP~~vidl~~l~~N~~~l~-~~~--~i~~avKA 55 (425)
T 1knw_A 25 GCPVWVYDAQIIRRQIAALK-QFD--VVRFAQKA 55 (425)
T ss_dssp CSSEEEEEHHHHHHHHHTTT-TSS--EEEEEGGG
T ss_pred CCCEEEEEHHHHHHHHHHHh-hCC--cceEeeec
Confidence 58999999999999999 99 999 88999999
No 23
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=96.77 E-value=0.0015 Score=59.07 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=38.5
Q ss_pred CcccHHHHHHHHhhhcCCCCCcEEEeehHHHHHHhh-hhhcCC--------Cccceeeccc
Q 045992 30 TEDGFVEFMKSTVLKRQELDETFYVLDLGHHFSLLS-LISNLP--------MVHPYYAVKG 81 (213)
Q Consensus 30 ~~~~~~~~I~~ii~~~~~~~~pF~V~DL~~V~~~~~-W~~~LP--------rV~PfYAVKC 81 (213)
.+..+.++++++ ..||||+|++.|.++++ |++.+| +++++|||||
T Consensus 17 ~~~~~~~l~~~~-------~tP~~vidl~~l~~n~~~l~~~~~~a~~~~~~~~~~~~avKa 70 (434)
T 1twi_A 17 DGYDAIELAEKF-------GTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKA 70 (434)
T ss_dssp TTEEHHHHHHHH-------CSSEEEEEHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEGGG
T ss_pred CCccHHHHHHhh-------CCCEEEEEHHHHHHHHHHHHHhhhhhhcccCCCeEEEEEEcc
Confidence 445566766553 48999999999999999 999998 8999999999
No 24
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=96.69 E-value=0.00019 Score=64.19 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=45.5
Q ss_pred eeeeEEccCCCCCCccccccC-CC-CCCCCCEEEEcCCCcc-cCCcCcccccCCCCcceEEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHP-LP-ELEVNDWLVFPDKRAN-TLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~-LP-el~vGDwLvf~n~GAY-t~s~s~~~f~s~~~p~E~~~~ 182 (213)
..+.|+||+|. |.+..++. +| ++++||+|+|.+.|+| +.+.+...+..+.-|-|+++.
T Consensus 309 ~~~~ivG~vcm--D~~~~d~~~~p~~~~~GD~v~l~g~~~~~~~~~~~~a~~~~ti~yEi~~~ 369 (384)
T 1xfc_A 309 RRCPGVGRICM--DQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTS 369 (384)
T ss_dssp EEEEEESCCCS--SCEEEEEESSSCCCCTTCEEEEECSSTTSCCCHHHHHHHHTSCHHHHHTC
T ss_pred EEeeEeeEecc--ceEEEEccCCCCCCCCCCEEEEEeCCCCCCCCHHHHHHHhCCchHhhccC
Confidence 46889999995 99998885 99 9999999999999988 455555566666666666553
No 25
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=96.38 E-value=0.0016 Score=63.87 Aligned_cols=48 Identities=8% Similarity=-0.051 Sum_probs=42.7
Q ss_pred ccHHHHHHHHhhhcCCCCCcEEEeehHHHHHHhh-hhhcCCC----------ccceeeccc
Q 045992 32 DGFVEFMKSTVLKRQELDETFYVLDLGHHFSLLS-LISNLPM----------VHPYYAVKG 81 (213)
Q Consensus 32 ~~~~~~I~~ii~~~~~~~~pF~V~DL~~V~~~~~-W~~~LPr----------V~PfYAVKC 81 (213)
.++.++++++... .-..||||.|++.|.++++ |++.+|+ ++|+|||||
T Consensus 70 v~l~eLa~~l~~~--~~gTPlyV~D~d~Lr~ni~~l~~af~~a~~~~~Y~~~~~i~YAvKA 128 (666)
T 3nzq_A 70 VDLAQLVKTREAQ--GQRLPALFCFPQILQHRLRSINAAFKRARESYGYNGDYFLVYPIKV 128 (666)
T ss_dssp EEHHHHHHHHHHT--TCCSSEEEECHHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEGGG
T ss_pred cCHHHHHHHHHhc--cCCCCEEEeCHHHHHHHHHHHHHHHHHhHHhhcccCCeEEEEEEee
Confidence 6899999877653 6789999999999999999 9999974 799999999
No 26
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=96.16 E-value=0.0023 Score=62.49 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=42.9
Q ss_pred cccHHHHHHHHhhhcCCCCCcEEEeehHHHHHHhh-hhhcCCC----------ccceeeccc
Q 045992 31 EDGFVEFMKSTVLKRQELDETFYVLDLGHHFSLLS-LISNLPM----------VHPYYAVKG 81 (213)
Q Consensus 31 ~~~~~~~I~~ii~~~~~~~~pF~V~DL~~V~~~~~-W~~~LPr----------V~PfYAVKC 81 (213)
+.++.++++++... .-..||||.|++.|.++++ |++.+|+ ++++|||||
T Consensus 47 ~v~l~eLa~~l~~~--~~gTPlyV~D~d~L~~ni~~l~~af~~a~~~~~y~~~~~i~YAvKA 106 (648)
T 3n2o_A 47 QIQLSKIVKQLEER--QLNVPVLVRFPQILHQRVHSICDAFNQAIEEYQYPNKYLLVYPIKV 106 (648)
T ss_dssp CEEHHHHHHHHHHT--TCCSSEEEECHHHHHHHHHHHHHHHHHHHHHHTCSSCEEECEEGGG
T ss_pred ccCHHHHHHHHhhc--CCCCCEEEEeHHHHHHHHHHHHHHHHHHHHhhcccCCeEEEEEEee
Confidence 36789999877653 6789999999999999999 9999974 799999999
No 27
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=95.89 E-value=0.0011 Score=58.42 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=42.6
Q ss_pred eeeeEEccCCCCCCccccccC-CC-CCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHP-LP-ELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKF 181 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~-LP-el~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~ 181 (213)
..+.|+||+| +|.+..++. +| ++++||+|.|.+.+. .+.+...+..+.-|-|+++
T Consensus 294 ~~~~ivG~vc--mD~~~~d~~~~~~~~~~GD~v~~~g~~~--~~~~~~a~~~~ti~yei~~ 350 (361)
T 2dy3_A 294 LDYPQVGRVC--MDQFVISLGDNPHGVEAGAKAVIFGENG--HDATDFAERLDTINYEVVC 350 (361)
T ss_dssp EEEEEESCCC--SSCEEEEEETCTTCCCTTCEEEEESTTS--CCHHHHHHHTTSCHHHHHH
T ss_pred EEeeEeeEEe--cccEEEEccCCCCCCCCCCEEEEEcCCC--CCHHHHHHHhCCchhheec
Confidence 4688999999 899998886 99 999999999987662 3455556666666666654
No 28
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=95.78 E-value=0.0011 Score=59.40 Aligned_cols=57 Identities=9% Similarity=0.012 Sum_probs=46.2
Q ss_pred eeeeEEccCCCCCCccccccCCCCCC-CCCEEEEcCCCcc-cCCcCcccccCCCCcceEEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHPLPELE-VNDWLVFPDKRAN-TLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~LPel~-vGDwLvf~n~GAY-t~s~s~~~f~s~~~p~E~~~~ 182 (213)
..+.|+||.| +|.+..++.+ +++ +||+|+|.+.|+| +.+.+...+..+.-|-|+++.
T Consensus 308 ~~~~ivG~vc--mD~~~~dv~~-~~~~~GD~v~l~g~~~~~~~~~~~~a~~~~ti~yEi~~~ 366 (386)
T 1vfs_A 308 KIRRAAGRIA--MDQFVVDLGE-DLAEAGDEAVILGDAERGEPTAEDWAQAAHTIAYEIVTR 366 (386)
T ss_dssp EEEEBCSCCC--SSCEEEEEET-CCCCTTCEEEEECCGGGTCCCHHHHHHHTTSCHHHHHHT
T ss_pred EEeeEeeEee--cCcEEEEccC-CCCCCCCEEEEEeCCCCCCCCHHHHHHHhCCchhheecc
Confidence 4678999999 6999988888 899 9999999999998 456666677777777777653
No 29
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=95.45 E-value=0.013 Score=51.59 Aligned_cols=33 Identities=15% Similarity=-0.080 Sum_probs=31.4
Q ss_pred CCcEEEeehHHHHHHhh-hhhcCCCccceeeccc
Q 045992 49 DETFYVLDLGHHFSLLS-LISNLPMVHPYYAVKG 81 (213)
Q Consensus 49 ~~pF~V~DL~~V~~~~~-W~~~LPrV~PfYAVKC 81 (213)
..|++++||+.|.+.++ |++.+|.++++|+||+
T Consensus 2 ~~~~~~idl~~l~~N~~~~~~~~~~~~l~~vvKa 35 (361)
T 2dy3_A 2 NLLTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKA 35 (361)
T ss_dssp CSEEEEECHHHHHHHHHHHHHHHTTSEEEEECHH
T ss_pred CceEEEEeHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 46899999999999999 9999999999999999
No 30
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=95.32 E-value=0.0015 Score=58.57 Aligned_cols=56 Identities=4% Similarity=0.065 Sum_probs=42.8
Q ss_pred eeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCC-CcccCCcCcccccCCCCcceEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDK-RANTLFVEPISMDLAMLPFELKF 181 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~-GAYt~s~s~~~f~s~~~p~E~~~ 181 (213)
..+.|+|+.| +|.+..|+ +|++++||+|+|.+. |+|+.+.+...+..+.-|-|+++
T Consensus 309 ~~~~ivG~vc--mD~~~vd~-~~~~~~GD~v~l~g~~~~~~~~~~~~a~~~~ti~yEi~~ 365 (391)
T 2vd8_A 309 XRVPIVGRVT--MDQFMIHL-PCEVPLGTXVTLIGRQGDEYISATEVAEYSGTINYEIIT 365 (391)
T ss_dssp EEEEEESCCC--SSCEEEEE-SSCCCTTCEEEEEEEETTEEECHHHHHHHTTSCHHHHHH
T ss_pred eecceeccee--cceeEeec-CCCCCCCCEEEEECCCCCCCCCHHHHHHHhCCcceEEEc
Confidence 4578999999 69999998 899999999997764 47777766666665555555554
No 31
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=94.62 E-value=0.0032 Score=56.59 Aligned_cols=56 Identities=13% Similarity=0.307 Sum_probs=42.3
Q ss_pred eeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCC-CcccCCcCcccccCCCCcceEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDK-RANTLFVEPISMDLAMLPFELKF 181 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~-GAYt~s~s~~~f~s~~~p~E~~~ 181 (213)
..+.|+|+.| +|.+..++. |++++||+|+|.+. |+|+.+.+...+..+.-|-|+++
T Consensus 302 ~~~~ivG~vc--mD~~~vdv~-~~~~~GD~v~l~g~~~~~~~~~~~~a~~~~ti~yEi~~ 358 (388)
T 1bd0_A 302 QKAPIVGRIC--MDQCMIRLP-GPLPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPC 358 (388)
T ss_dssp EEEEEESCCC--SSCEEEECS-SCCCTTCEEEEEEEETTEEECHHHHHHHHTSCTTHHHH
T ss_pred EEeeEEeecc--cceEEEECC-CCCCCCCEEEEecCCCCCCCCHHHHHHHhCCcceEEec
Confidence 3678999999 699998887 89999999987764 47777666666665555555554
No 32
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=94.17 E-value=0.0046 Score=55.24 Aligned_cols=57 Identities=9% Similarity=0.133 Sum_probs=48.3
Q ss_pred eeeeEEccCCCCCCccccccCCCCCCCCCEEEEcCC-CcccCCcCcccccCCCCcceEEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHPLPELEVNDWLVFPDK-RANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~LPel~vGDwLvf~n~-GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
..+.|.|+.| +|.+..++.+ ++++||+|+|.+. |+|+.+.+...+.++.-|-|+++.
T Consensus 304 ~~~~ivG~vc--mD~~~vdv~~-~~~~GD~v~l~g~~~~~~~~~~~~a~~~~ti~yEi~~~ 361 (380)
T 3co8_A 304 QKCRQVGQIA--MDQMMVALPH-EYPIGTEVTLIGKSGKYENTLYDLHKHSGVPPWKITVA 361 (380)
T ss_dssp EEEEEESCCC--SSCEEEEESS-CCCTTCEEEEEEEETTEEECHHHHHHHHSCCHHHHHHT
T ss_pred EEeEEecccc--cceEEEECCC-CCCCCCEEEEEeCCCCCCCCHHHHHHHhCCchheeecC
Confidence 4577999999 5999988888 8999999998874 999999888888888888887763
No 33
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=93.65 E-value=0.085 Score=47.00 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=32.0
Q ss_pred CCCcEEEeehHHHHHHhh-hhhcCCCccceeeccc
Q 045992 48 LDETFYVLDLGHHFSLLS-LISNLPMVHPYYAVKG 81 (213)
Q Consensus 48 ~~~pF~V~DL~~V~~~~~-W~~~LPrV~PfYAVKC 81 (213)
.+.|++++||+.|.+.++ +++.+|.++.+|+||+
T Consensus 5 ~~~p~~~idl~~i~~N~~~l~~~~~~~~l~~vvKa 39 (386)
T 1vfs_A 5 PTRVYAEIDLDAVRANVRALRARAPRSALMAVVKS 39 (386)
T ss_dssp CSSEEEEEEHHHHHHHHHHHHTTSTTSEEEEECHH
T ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 457999999999999999 9999999999999999
No 34
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=93.40 E-value=0.055 Score=47.60 Aligned_cols=35 Identities=14% Similarity=-0.063 Sum_probs=32.5
Q ss_pred CCCCcEEEeehHHHHHHhh-hhhcCC--Cccceeeccc
Q 045992 47 ELDETFYVLDLGHHFSLLS-LISNLP--MVHPYYAVKG 81 (213)
Q Consensus 47 ~~~~pF~V~DL~~V~~~~~-W~~~LP--rV~PfYAVKC 81 (213)
+-+.|++++|++.+.+.++ +++.+| +++.+|+||+
T Consensus 9 ~~~tP~~~idl~~l~~N~~~l~~~~~~~~~~l~~~vKa 46 (376)
T 3anu_A 9 TLPTPALTIDRTTARRNAERMRERCRALGVRLRPHVKT 46 (376)
T ss_dssp GSCSSEEEEEHHHHHHHHHHHHHHHHHHTCEECCBCTT
T ss_pred cCCCceEEEeHHHHHHHHHHHHHHHHHcCCcEEEEEhh
Confidence 3468999999999999999 999998 8999999999
No 35
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=93.34 E-value=0.072 Score=47.35 Aligned_cols=35 Identities=17% Similarity=-0.038 Sum_probs=31.1
Q ss_pred CCCCcEEEeehHHHHHHhh-hhhcCCCccceeeccc
Q 045992 47 ELDETFYVLDLGHHFSLLS-LISNLPMVHPYYAVKG 81 (213)
Q Consensus 47 ~~~~pF~V~DL~~V~~~~~-W~~~LPrV~PfYAVKC 81 (213)
+.+.+++++||+.|.+.++ +++.+|+++.+|+||+
T Consensus 8 ~~~~~~~~idl~~i~~N~~~l~~~~~~~~l~~vvKa 43 (384)
T 1xfc_A 8 PGLLAEAMVDLGAIEHNVRVLREHAGHAQLMAVVKA 43 (384)
T ss_dssp ---CEEEEEEHHHHHHHHHHHHHHHTTSEEEEECHH
T ss_pred CCCCeEEEEeHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 4568999999999999999 9999999999999998
No 36
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=91.59 E-value=0.029 Score=49.33 Aligned_cols=55 Identities=7% Similarity=0.137 Sum_probs=42.1
Q ss_pred eeeeEEccCCCCCCccccccC-CCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEEEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHP-LPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELKFS 182 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~-LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~ 182 (213)
....++|+.|+ |.+.-++. +|++++||.|.|.+.+ .+.+...+.++.-|-|+++.
T Consensus 291 ~~~~ivG~vcm--D~~~vd~~~~~~~~~GD~v~l~~~~---~~~~~~a~~~~ti~yEi~~~ 346 (357)
T 1rcq_A 291 KPGRLVGRVSM--DMLTVDLTDHPQAGLGSRVELWGPN---VPVGALAAQFGSIPYQLLCN 346 (357)
T ss_dssp EEEEBCSCCCS--SCEEEECTTCTTCCTTCEEEEESSS---SCHHHHHHHTTCCHHHHHHT
T ss_pred EEeEEeeEEec--ceEEEECCCCCCCCCCCEEEEECCC---CCHHHHHHHhCCchhheeec
Confidence 45789999996 88887875 8999999999998865 55555666666666676653
No 37
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=91.28 E-value=0.24 Score=44.29 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=31.2
Q ss_pred CCcEEEeehHHHHHHhh-hhhcCCCc-cceeeccc
Q 045992 49 DETFYVLDLGHHFSLLS-LISNLPMV-HPYYAVKG 81 (213)
Q Consensus 49 ~~pF~V~DL~~V~~~~~-W~~~LPrV-~PfYAVKC 81 (213)
..+++++||+.|.+.++ +++.+|.+ +.+|+||+
T Consensus 6 ~~~~~~idl~ai~~N~~~l~~~~~~~~~l~~vvKA 40 (388)
T 1bd0_A 6 RDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKA 40 (388)
T ss_dssp SSEEEEEEHHHHHHHHHHHHHHSCTTCEEEEECHH
T ss_pred CceEEEEcHHHHHHHHHHHHHhCCCCCEEEEEEEe
Confidence 36899999999999999 99999999 99999999
No 38
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=90.79 E-value=0.29 Score=43.66 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=30.9
Q ss_pred CCcEEEeehHHHHHHhh-hhhcC-CCccceeeccc
Q 045992 49 DETFYVLDLGHHFSLLS-LISNL-PMVHPYYAVKG 81 (213)
Q Consensus 49 ~~pF~V~DL~~V~~~~~-W~~~L-PrV~PfYAVKC 81 (213)
+.|++++||+.|.+.++ +++.+ |.++.+|+||+
T Consensus 10 ~~~~~~idl~ai~~N~~~l~~~~~~~~~l~~vvKa 44 (391)
T 2vd8_A 10 RDTWVEVDLDAIYNNVTHIXEFIPSDVEIFAVVKG 44 (391)
T ss_dssp SSCEEEEEHHHHHHHHHHHHHHSCTTCEEEEECHH
T ss_pred CCeEEEEcHHHHHHHHHHHHHhcCCCCEEEEEEEe
Confidence 46999999999999999 99999 68999999999
No 39
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=88.85 E-value=0.38 Score=42.77 Aligned_cols=33 Identities=12% Similarity=-0.103 Sum_probs=31.4
Q ss_pred CCcEEEeehHHHHHHhh-hhhcCCCccceeeccc
Q 045992 49 DETFYVLDLGHHFSLLS-LISNLPMVHPYYAVKG 81 (213)
Q Consensus 49 ~~pF~V~DL~~V~~~~~-W~~~LPrV~PfYAVKC 81 (213)
..|++++||+.|.+.++ +++.+|.++.+|+||+
T Consensus 8 ~~~~~~idl~~l~~N~~~l~~~~~~~~l~~vvKa 41 (380)
T 3co8_A 8 RSTRIEFSKSSLAYNVQYTKQVSGAKTLWLAVKS 41 (380)
T ss_dssp SSCEEEECHHHHHHHHHHHHHHHCCSEEEEECHH
T ss_pred CCeEEEEcHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 57999999999999999 9999999999999999
No 40
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=82.31 E-value=0.19 Score=44.88 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=35.9
Q ss_pred eeeeEEccCCCCCCccccccC-CCCCCCCCEEEEcCCCcccCCcCcccccCCCCcceEE
Q 045992 123 YKSTVFRPTCTAVGKVFAGHP-LPELEVNDWLVFPDKRANTLFVEPISMDLAMLPFELK 180 (213)
Q Consensus 123 ~~ssI~GPtCds~D~i~~~~~-LPel~vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~ 180 (213)
....|+|+.|. |.+.-++. +|++++||.|.|-..| .+.....+....-|-|++
T Consensus 313 ~~~~ivG~vcm--D~~~vdv~~~~~~~~GD~v~l~g~~---~~~~~~a~~~~ti~yEi~ 366 (379)
T 2rjg_A 313 REVPIVGRVAM--DMICVDLGPQAQDKAGDPVILWGEG---LPVERIAEMTKVSAYELI 366 (379)
T ss_dssp EEEEBCSCCCS--SCEEEECCTTCCCCTTCEEEEEBTT---BCHHHHHHHHTCCHHHHH
T ss_pred EEeeEeeeecc--ccEEEECCCCCCCCCCCEEEEECCC---CCHHHHHHHhCCcceEEE
Confidence 45779999995 88887775 8899999999977654 333333444444444443
No 41
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=82.28 E-value=0.83 Score=40.68 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=31.3
Q ss_pred CCcEEEeehHHHHHHhh-hhhcCCCccceeeccc
Q 045992 49 DETFYVLDLGHHFSLLS-LISNLPMVHPYYAVKG 81 (213)
Q Consensus 49 ~~pF~V~DL~~V~~~~~-W~~~LPrV~PfYAVKC 81 (213)
..|++++||+.|.+.++ .++.+|.++.+|+||+
T Consensus 22 ~~p~~~idl~al~~N~~~l~~~~~~~~l~~vvKa 55 (379)
T 2rjg_A 22 QAATVVINRRALRHNLQRLRELAPASKMVAVVKA 55 (379)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHHSTTSEEEEECHH
T ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 47999999999999999 9999999999999998
No 42
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=82.09 E-value=3 Score=40.36 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=51.4
Q ss_pred CCCCceeeeeEEccCCCCCCccc----cccCCCCCC---CCCEEEEcCCCcccCCcCcccccCCCCcceEEEEE
Q 045992 117 SNNQTTYKSTVFRPTCTAVGKVF----AGHPLPELE---VNDWLVFPDKRANTLFVEPISMDLAMLPFELKFSV 183 (213)
Q Consensus 117 ~~~~~~~~ssI~GPtCds~D~i~----~~~~LPel~---vGDwLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~~ 183 (213)
-++.+....+|++=||||.+.|. ...+||+++ ..-+|-|-..|||=-.++. .-|..+-|-++-+++
T Consensus 468 l~e~p~~~~~l~diTCDsdg~i~~~~~~~l~lh~~~~~~~~y~lg~fl~GAYQe~lg~-~HnLfg~~~~v~v~~ 540 (619)
T 3nzp_A 468 LDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGM-KHNLFTHPTEAIISI 540 (619)
T ss_dssp TTSCCCCBBCCEESCSCTTSBCCCCSSSCCBCCCCCTTTSCCEEEECSCSSSTTTTCC-CTTSCCCCEEEEEEE
T ss_pred cCCCcceeeEEecccccCCCccccCCcccccCCCCCCCCCCcEEEEEccchHHHHHhh-ccccCCCCCEEEEEE
Confidence 34456788999999999999854 334577876 3447889999999999995 668888888887765
No 43
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=75.64 E-value=2.7 Score=37.09 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=31.9
Q ss_pred CCCCcEEEeehHHHHHHhh-hhhcCC--Cccceeeccc
Q 045992 47 ELDETFYVLDLGHHFSLLS-LISNLP--MVHPYYAVKG 81 (213)
Q Consensus 47 ~~~~pF~V~DL~~V~~~~~-W~~~LP--rV~PfYAVKC 81 (213)
+-+.|++++||+.+.+.++ .++.++ .++..++||+
T Consensus 11 ~~~tP~~~idl~al~~N~~~l~~~~~~~~~~l~~vvKa 48 (376)
T 3llx_A 11 HPDTPYLLIDEAKLKSNINYLKQRVESLGSHLRPHLKT 48 (376)
T ss_dssp SSCSSEEEEEHHHHHHHHHHHHHHHHHTTCCBCCBCTT
T ss_pred hCCCcEEEEcHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4579999999999999999 888886 8999999999
No 44
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=74.86 E-value=6.4 Score=38.50 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=51.8
Q ss_pred CCCCceeeeeEEccCCCCCCcccc---------ccCCCCCCCCC--EEEEcCCCcccCCcCcccccCCCCcceEEEEE
Q 045992 117 SNNQTTYKSTVFRPTCTAVGKVFA---------GHPLPELEVND--WLVFPDKRANTLFVEPISMDLAMLPFELKFSV 183 (213)
Q Consensus 117 ~~~~~~~~ssI~GPtCds~D~i~~---------~~~LPel~vGD--wLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~~ 183 (213)
.++.+....+|++=||||.-.|.+ ..+||+++.|+ +|-|-..|||==.++. .-|..+-|-++-+++
T Consensus 513 l~e~p~~~~~l~diTCDsdG~i~~fi~~~~~~~~l~lh~~~~~e~y~lg~Fl~GAYQe~lg~-~HnLfg~~~~v~v~~ 589 (666)
T 3nzq_A 513 LDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVGAYQEILGN-MHNLFGDTEAVDVFV 589 (666)
T ss_dssp TTSCCCEEEEEEESCSSTTCBCCCEEETTEEESSEEECSCCTTSCCEEEECSCCSSCGGGCC-CTTSCCCCEEEEEEE
T ss_pred cCCCcceeeEEeccccCCCCchhhccCCCCccccccccccCCCCccEEEEEecchhhHHhcc-ccccCCCCCEEEEEE
Confidence 344668899999999999844432 34677887665 8889999999999997 568888898887775
No 45
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=69.10 E-value=5.2 Score=36.02 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=31.8
Q ss_pred CCCCcEEEeehHHHHHHhh-hhhcCCCccceeeccc
Q 045992 47 ELDETFYVLDLGHHFSLLS-LISNLPMVHPYYAVKG 81 (213)
Q Consensus 47 ~~~~pF~V~DL~~V~~~~~-W~~~LPrV~PfYAVKC 81 (213)
....++.++||+.|...++ .++.+|.++-.|+||+
T Consensus 17 ~~~~~~~~Idl~al~~N~~~l~~~~~~~~l~aVvKA 52 (376)
T 3kw3_A 17 FPATAIATIDVRAIVANYRTLAQHVAPTECSAVVKA 52 (376)
T ss_dssp CCCSEEEEECHHHHHHHHHHHHHHHTTSEECEECHH
T ss_pred cCCCeEEEEcHHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 4568899999999999999 8999998999999997
No 46
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=68.80 E-value=5.1 Score=39.09 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=51.0
Q ss_pred CCCceeeeeEEccCCCCCCcccc---------ccCCCCCCCCC--EEEEcCCCcccCCcCcccccCCCCcceEEEEEE
Q 045992 118 NNQTTYKSTVFRPTCTAVGKVFA---------GHPLPELEVND--WLVFPDKRANTLFVEPISMDLAMLPFELKFSVR 184 (213)
Q Consensus 118 ~~~~~~~ssI~GPtCds~D~i~~---------~~~LPel~vGD--wLvf~n~GAYt~s~s~~~f~s~~~p~E~~~~~~ 184 (213)
++.+....+|++=||||.-.|.+ ..+||+++.|+ +|-|-..|||==.++. .-|..+-|-++-+++.
T Consensus 497 ~e~p~~~~~l~diTCDsdG~i~~f~~~~~~~~~l~lh~~~~~e~y~lg~fl~GAYQe~lg~-~HnLfg~~~~v~v~~~ 573 (648)
T 3n2o_A 497 QNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPVPAWNEDEPYLMGFFLVGAYQEILGD-MHNLFGDTHSVVVNVG 573 (648)
T ss_dssp GGTTSEEEEEEESSSCTTCBCCCEEETTEEESSEEECCCCTTSCCEEEEESCCSSHHHHCC-CGGGCCCCEEEEEEEC
T ss_pred CCCcceeeEEeccccCCCCchhhccCCCCCccceecCcCCCCCccEEEEEecchhhHHhcc-ccccCCCCCEEEEEEc
Confidence 34568899999999999844432 35677887665 7889999999988886 5688888888877653
No 47
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=67.32 E-value=6.5 Score=35.21 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=30.7
Q ss_pred CCCcEEEeehHHHHHHhh-hhhcCC-Cccceeeccc
Q 045992 48 LDETFYVLDLGHHFSLLS-LISNLP-MVHPYYAVKG 81 (213)
Q Consensus 48 ~~~pF~V~DL~~V~~~~~-W~~~LP-rV~PfYAVKC 81 (213)
...++.++||+.|...++ .++.+| .++.+|+||+
T Consensus 6 ~r~~~~~Idl~al~~N~~~l~~~~~~~~~l~avvKa 41 (371)
T 3e5p_A 6 HRPTRLHIDTQAITENVQKECQRLPEGTALFAVVKA 41 (371)
T ss_dssp TSSCEEEECHHHHHHHHHHHHHSSCSSSEEEEECHH
T ss_pred cCCeEEEEEHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 357889999999999999 888887 7999999999
No 48
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=60.39 E-value=9.3 Score=33.19 Aligned_cols=31 Identities=10% Similarity=-0.037 Sum_probs=28.6
Q ss_pred CcEEEeehHHHHHHhh-hhhcCCCccceeeccc
Q 045992 50 ETFYVLDLGHHFSLLS-LISNLPMVHPYYAVKG 81 (213)
Q Consensus 50 ~pF~V~DL~~V~~~~~-W~~~LPrV~PfYAVKC 81 (213)
.|+.++||+.|.+.++ .++. |.++-+|+||+
T Consensus 3 ~~~~~idl~~l~~N~~~l~~~-~~~~l~~vvKa 34 (357)
T 1rcq_A 3 PARALIDLQALRHNYRLAREA-TGARALAVIKA 34 (357)
T ss_dssp CCEEEEEHHHHHHHHHHHHHH-HCSEEEEECHH
T ss_pred ceEEEEeHHHHHHHHHHHHhC-CCCeEEEEEEe
Confidence 5789999999999999 8777 99999999998
No 49
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=55.58 E-value=5 Score=36.47 Aligned_cols=35 Identities=14% Similarity=-0.136 Sum_probs=31.5
Q ss_pred CCCCcEEEeehHHHHHHhh-hhhcC--CCccceeeccc
Q 045992 47 ELDETFYVLDLGHHFSLLS-LISNL--PMVHPYYAVKG 81 (213)
Q Consensus 47 ~~~~pF~V~DL~~V~~~~~-W~~~L--PrV~PfYAVKC 81 (213)
+-..|++++|++.+.+.++ .++.+ +.++-.|+||+
T Consensus 43 ~~~tP~~viDl~al~~N~~~l~~~~~~~gv~l~~vvKa 80 (426)
T 3gwq_A 43 DVSLPAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKT 80 (426)
T ss_dssp CBCSSEEEEEHHHHHHHHHHHHHHHHHHCCEECCBCTT
T ss_pred cCCCCeEEEeHHHHHHHHHHHHHHHhhcCCEEEEEEcc
Confidence 5679999999999999999 88888 57899999999
No 50
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=53.41 E-value=18 Score=32.19 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=29.2
Q ss_pred CCcEEEeehHHHHHHhh-hhhcCC-Cccceeeccc
Q 045992 49 DETFYVLDLGHHFSLLS-LISNLP-MVHPYYAVKG 81 (213)
Q Consensus 49 ~~pF~V~DL~~V~~~~~-W~~~LP-rV~PfYAVKC 81 (213)
..++.++||+.|...++ .++.++ .++-+|+||+
T Consensus 5 ~~~~l~Idl~al~~N~~~l~~~~~~~~~l~avvKa 39 (374)
T 4ecl_A 5 DRAYLEINLNNLEHNVNTLQKAMSPKCELMAVVKA 39 (374)
T ss_dssp SSEEEEECHHHHHHHHHHHHHTSCTTCEEEEECHH
T ss_pred CcEEEEEcHHHHHHHHHHHHHhcCCCCEEEEEEcc
Confidence 46788999999999999 888775 7999999999
No 51
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=45.52 E-value=27 Score=31.07 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=30.3
Q ss_pred CCCcEEEeehHHHHHHhh-hhhcCC-Cccceeeccc
Q 045992 48 LDETFYVLDLGHHFSLLS-LISNLP-MVHPYYAVKG 81 (213)
Q Consensus 48 ~~~pF~V~DL~~V~~~~~-W~~~LP-rV~PfYAVKC 81 (213)
...++.++||+.|...++ -++.+| .++-.++||+
T Consensus 6 ~r~~~~~Idl~al~~N~~~l~~~~~~~~~l~aVvKa 41 (367)
T 3mub_A 6 HRPTKALIHLGAIRQNIQQMGAHIPQGTLKLAVVKA 41 (367)
T ss_dssp TSSCEEEECHHHHHHHHHHHHHTSCTTCEEEEECHH
T ss_pred cCCeEEEEeHHHHHHHHHHHHHhCCCCCEEEEEECc
Confidence 357889999999999999 888887 7999999998
No 52
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=32.11 E-value=23 Score=25.34 Aligned_cols=15 Identities=20% Similarity=0.714 Sum_probs=12.7
Q ss_pred CCCCCCCCCEEEEcC
Q 045992 143 PLPELEVNDWLVFPD 157 (213)
Q Consensus 143 ~LPel~vGDwLvf~n 157 (213)
.+|+..+|||+++.-
T Consensus 32 Lv~~~~vGD~VLVH~ 46 (75)
T 2z1c_A 32 LMPDTKPGDWVIVHT 46 (75)
T ss_dssp TSTTCCTTCEEEEET
T ss_pred EeCCCCCCCEEEEec
Confidence 467899999999876
No 53
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=23.48 E-value=53 Score=23.87 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=19.3
Q ss_pred eccchhhH-HHhhCCCC--eEEEEEec
Q 045992 78 AVKGKLDK-IRMWHSKC--ELSIRIKS 101 (213)
Q Consensus 78 AVKCEL~K-I~~~~P~a--~LlLRI~~ 101 (213)
|...||.| |.+.||++ ++-+|-..
T Consensus 20 aL~~EL~kRl~~~fpd~~~~V~Vr~~s 46 (81)
T 1ghh_A 20 ALAGELSRRIQYAFPDNEGHVSVRYAA 46 (81)
T ss_dssp HHHHHHHHHHHHHCSSSCCEEEEEEES
T ss_pred HHHHHHHHHHHhhCCCCCceEEEeecC
Confidence 66669988 99999999 77666665
No 54
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=23.20 E-value=42 Score=22.21 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=14.3
Q ss_pred cceeeccc-----------hhhHHHhhCCCCe
Q 045992 74 HPYYAVKG-----------KLDKIRMWHSKCE 94 (213)
Q Consensus 74 ~PfYAVKC-----------EL~KI~~~~P~a~ 94 (213)
++||||+. |-.+.-.-+|+|.
T Consensus 3 ~kyYaV~~G~~~GIy~sW~ec~~qV~g~~ga~ 34 (53)
T 3bsu_A 3 HMFYAVRRGRKTGVFLTWNECRAQVDRFPAAR 34 (53)
T ss_dssp CCEEEEEESSSCEEESSHHHHHHHHTTCTTCE
T ss_pred CCEEEEEeCCCCceECCHHHHHHHhcCCCCCc
Confidence 58999987 6666555566553
No 55
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=22.75 E-value=88 Score=27.95 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=27.2
Q ss_pred CCCcEEEeehHHHHHHhhhhhc-C-CCccceeeccc
Q 045992 48 LDETFYVLDLGHHFSLLSLISN-L-PMVHPYYAVKG 81 (213)
Q Consensus 48 ~~~pF~V~DL~~V~~~~~W~~~-L-PrV~PfYAVKC 81 (213)
...++.++||+.|...++ .+. + |.++-.++||+
T Consensus 6 ~r~~~~~Idl~al~~N~~-l~~~~~~~~~l~aVvKA 40 (382)
T 4a3q_A 6 YRSAYMNVDLNAVASNFK-VFSTLHPNKTVMAVVKA 40 (382)
T ss_dssp CSSEEEEEEHHHHHHHHH-HHHHHCTTSEEEEECHH
T ss_pred cCCEEEEEEHHHHHHHHH-HHhhcCCCCEEEEEEee
Confidence 356789999999999988 443 3 68999999999
No 56
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=22.07 E-value=40 Score=24.91 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=11.4
Q ss_pred CCCCCCCEEEEcC
Q 045992 145 PELEVNDWLVFPD 157 (213)
Q Consensus 145 Pel~vGDwLvf~n 157 (213)
|+..+|||+++.-
T Consensus 40 ~~~~vGD~VLVH~ 52 (90)
T 2ot2_A 40 GQPRVGQWVLVHV 52 (90)
T ss_dssp SCBCTTCEEEEET
T ss_pred CCCCCCCEEEEec
Confidence 7889999999875
No 57
>4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A
Probab=21.13 E-value=27 Score=28.08 Aligned_cols=9 Identities=44% Similarity=0.981 Sum_probs=7.9
Q ss_pred EEEeehhhh
Q 045992 197 VILLHGFAS 205 (213)
Q Consensus 197 ~~~~~~~~~ 205 (213)
|+|||||.+
T Consensus 54 VlllHG~~~ 62 (281)
T 4fbl_A 54 VLVSHGFTG 62 (281)
T ss_dssp EEEECCTTC
T ss_pred EEEECCCCC
Confidence 899999964
No 58
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=20.66 E-value=44 Score=25.40 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=11.9
Q ss_pred CCC-CCCCCCEEEEcC
Q 045992 143 PLP-ELEVNDWLVFPD 157 (213)
Q Consensus 143 ~LP-el~vGDwLvf~n 157 (213)
.+| +..+||||++.-
T Consensus 55 Lv~e~~~vGDyVLVHv 70 (103)
T 3d3r_A 55 LMTEPLAIGDYVLIHI 70 (103)
T ss_dssp TBSSCCCTTCEEEEEE
T ss_pred eecCCCCCCCEEEEee
Confidence 357 689999998864
Done!