BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045994
(574 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y79|1 Chain 1, Crystal Structure Of The E.Coli Dipeptidyl
Carboxypeptidase Dcp In Complex With A Peptidic
Inhibitor
Length = 680
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 167/560 (29%), Positives = 279/560 (49%), Gaps = 31/560 (5%)
Query: 15 VLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEXXXXXXXXX 74
VL G L + + + E L+ +F++ +L A K ++ D ++
Sbjct: 143 VLAGAKLAQADKAKLKVLNTEAATLTSQFNQRLLAANKSGGLVVNDIAQLAGMSEQEIAL 202
Query: 75 XXXXXXSKGHENATAENGPWIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDN 134
KG +N W+I L + + ++R RE+++ A +RA D ++
Sbjct: 203 AAEAAREKGLDN------KWLIPLLNTTQQPALAEMRDRATREKLFIAGWTRAEKNDAND 256
Query: 135 T-PIIDRILKLRLEKAKLLGYKNYAEVSMAMKMA-TVDKAFELLEKLQSASWDPAVQDME 192
T II R++++R ++A LLG+ +YA +A +MA T + A + ++ A+ A ++
Sbjct: 257 TRAIIQRLVEIRAQQATLLGFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELA 316
Query: 193 DLKS-FSKSQGALEADKLDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMD-GLFNLA 250
+++ K QG A WD F++E++R K++++E +L+PYF L V++ G+F A
Sbjct: 317 SIQAVIDKQQGGFSAQP---WDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTA 373
Query: 251 KTLFGID-IEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDPYSRPSEKKGGAWMDEVV 309
LFGI +E D PV++ DVR + + D +G +A FY D ++R S K GGAWM V
Sbjct: 374 NQLFGIKFVERFD--IPVYHPDVRVWEIFDHNGVGLALFYGDFFARDS-KSGGAWMGNFV 430
Query: 310 SRSRVLSRNGTTSRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDE 369
+S + N T PV + VCN P +P+L+ + +V T+FHEFGH L + +Q
Sbjct: 431 EQSTL---NKTH---PVIYNVCNYQKPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRY 484
Query: 370 SLVAGIRGIEWDAVELPSQFMENWCYHRDTLMSIAKHYQTGESLPEDVYLKLLAARTFRA 429
+ ++G D VE PSQ E+W H A+HYQ+G ++P+++ K+ A F
Sbjct: 485 ATLSGTNTPR-DFVEFPSQINEHWATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNK 543
Query: 430 GSFSLRQLRFASVDLELHTNYVPGGSESVFDVDQRVSKTTQV-LPPLPEDRFLCSFSHIF 488
G L A +D+ H + V D + R + LP +P F+HIF
Sbjct: 544 GYEMSELLSAALLDMRWHCLEENEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIF 603
Query: 489 XXXXXXXXXSYKWAEVLSADAFSAF-EDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEV 547
+Y W ++L+ D + F E GL ++ G RFRE IL+ G + +
Sbjct: 604 GGGYAAGYYAYLWTQMLADDGYQWFVEQGGL-----TRENGLRFREAILSRGNSEDLERL 658
Query: 548 FVEFRGREPSPEPLLRHNGL 567
+ ++RG+ P P+L+H GL
Sbjct: 659 YRQWRGKAPKIMPMLQHRGL 678
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 215 bits (548), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 139/485 (28%), Positives = 240/485 (49%), Gaps = 25/485 (5%)
Query: 90 ENGPWIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKA 149
E+G +TL P + +++ R +V A+ SR +N+ I+ ++ LR +K+
Sbjct: 196 EDGKLKVTLKYPHYFPLLKKCHVPETRRKVEEAFNSRCKE---ENSAILKELVTLRAQKS 252
Query: 150 KLLGYKNYAEVSMAMKMATVDKAF-----ELLEKLQSASWDPAVQDMEDLKSFSKSQGAL 204
+LLG+ +A+ + M MA + EL +KL+ +E ++ + +G
Sbjct: 253 RLLGFHTHADYVLEMNMAKTSQTVATFLDELAQKLKPLGEQERAVILELKRAECERRGLP 312
Query: 205 EADKLDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADGL 264
++ WD+ ++ ++ E++Y +++ L+ YF + V GL + + L G+ +G
Sbjct: 313 FDGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFHHEEG- 371
Query: 265 APVWNNDVRFYCVKDS-SGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSR 323
A W+ DVR Y +D+ SG + FY D Y R + A + L ++G+ +
Sbjct: 372 ASAWHEDVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFG---LQPGCLRQDGS-RQ 427
Query: 324 LPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAV 383
+ +A MV N T P D PSL+ EVET FHEFGH + + ++ + ++ +G +E D V
Sbjct: 428 IAIAAMVANFTKPTADAPSLLQHDEVETYFHEFGHVMHQLCSQAEFAMFSGTH-VERDFV 486
Query: 384 ELPSQFMENWCYHRDTLMSIAKHYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVD 443
E PSQ +ENW + ++ L+ +++HY+TG ++P ++ KL+ +R G F+LRQ+ A VD
Sbjct: 487 EAPSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVD 546
Query: 444 LELHTNYVPGGSESVFDVDQRVSKTTQVLPPLPEDRFLCSFSHIFXXXXXXXXXSYKWAE 503
LHT +E R+ + +P P +F H+ Y W+E
Sbjct: 547 QALHTQTDADPAEEY----ARLCQEILGVPATPGTNMPATFGHL-AGGYDAQYYGYLWSE 601
Query: 504 VLSADAF-SAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLL 562
V S D F + F+ G+ +SK G +R IL GG + + F GR+P + L
Sbjct: 602 VYSMDMFHTRFKQEGVLNSK----VGMDYRSCILRPGGSEDASAMLRRFLGRDPKQDAFL 657
Query: 563 RHNGL 567
GL
Sbjct: 658 LSKGL 662
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
Neurolysin Specificity In Neurotensin Cleavage Site
Length = 674
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/485 (28%), Positives = 239/485 (49%), Gaps = 25/485 (5%)
Query: 90 ENGPWIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKA 149
E+G +TL P + +++ R +V A+ SR +N+ I+ ++ LR +K+
Sbjct: 196 EDGKLKVTLKYPHYFPLLKKCHVPETRRKVEEAFNSRCKE---ENSAILKELVTLRAQKS 252
Query: 150 KLLGYKNYAEVSMAMKMATVDKAF-----ELLEKLQSASWDPAVQDMEDLKSFSKSQGAL 204
+LLG+ +A+ + M MA + EL +KL+ +E ++ + +G
Sbjct: 253 RLLGFHTHADYVLEMNMAKTSQTVATFLDELAQKLKPLGEQERAVILELKRAECERRGLP 312
Query: 205 EADKLDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADGL 264
++ WD+ ++ ++ E++Y +++ L+ YF + V GL + + L G+ +G
Sbjct: 313 FDGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFHHEEG- 371
Query: 265 APVWNNDVRFYCVKDS-SGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSR 323
A W+ DVR Y +D+ SG + FY D Y R + A + L ++G+ +
Sbjct: 372 ASAWHEDVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFG---LQPGCLRQDGS-RQ 427
Query: 324 LPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAV 383
+ +A MV N T P D PSL+ EV T FHEFGH + + ++ + ++ +G +E D V
Sbjct: 428 IAIAAMVANFTKPTADAPSLLQHDEVRTYFHEFGHVMHQLCSQAEFAMFSGTH-VETDFV 486
Query: 384 ELPSQFMENWCYHRDTLMSIAKHYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVD 443
E PSQ +ENW + ++ L+ +++HY+TG ++P ++ KL+ +R G F+LRQ+ A VD
Sbjct: 487 EAPSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVD 546
Query: 444 LELHTNYVPGGSESVFDVDQRVSKTTQVLPPLPEDRFLCSFSHIFXXXXXXXXXSYKWAE 503
LHT +E R+ + +P P +F H+ Y W+E
Sbjct: 547 QALHTQTDADPAEEY----ARLCQEILGVPATPGTNMPATFGHL-AGGYDAQYYGYLWSE 601
Query: 504 VLSADAF-SAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLL 562
V S D F + F+ G+ +SK G +R IL GG + + F GR+P + L
Sbjct: 602 VYSMDMFHTRFKQEGVLNSK----VGMDYRSCILRPGGSEDASAMLRRFLGRDPKQDAFL 657
Query: 563 RHNGL 567
GL
Sbjct: 658 LSKGL 662
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet
Oligopeptidase Specificity For Neurotensin Cleavage Site
Length = 678
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 143/484 (29%), Positives = 234/484 (48%), Gaps = 31/484 (6%)
Query: 94 WIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLG 153
+ +TL P + VM+ R ++ A+ +R +NT I+ ++L LR + AKLLG
Sbjct: 216 YKVTLKYPHYFPVMKKCCVPETRRKMEMAFHTRCKQ---ENTAILQQLLPLRAQVAKLLG 272
Query: 154 YKNYAEVSMAMKMA-TVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQG---ALEAD-K 208
Y +A+ + + A + + L+ L + E + S K + E D K
Sbjct: 273 YNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAEREFILSLKKKECEERGFEYDGK 332
Query: 209 LDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADGLAPVW 268
++ WD+ ++ + E KY +++E L+ YF + V +GL ++ + L G+ E A VW
Sbjct: 333 INAWDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSFEQVPD-AHVW 391
Query: 269 NNDVRFYCVKD-SSGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVA 327
N V Y VKD ++G + FY D Y R + A + L +G+ + VA
Sbjct: 392 NKSVSLYTVKDKATGEVLGQFYLDLYPREGKYNHAACFG---LQPGCLLPDGS-RMMSVA 447
Query: 328 HMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPS 387
+V N + PV +PSL+ EVET FHEFGH + + + D + +G +E D VE+PS
Sbjct: 448 ALVVNFSQPVAGRPSLLRHDEVETYFHEFGHVMHQICAQTDFARFSGT-NVERDFVEVPS 506
Query: 388 QFMENWCYHRDTLMSIAKHYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELH 447
Q +ENW + D+L ++KHY+ G + +++ KL+A+R G +LRQ+ + VD LH
Sbjct: 507 QMLENWVWDVDSLRKLSKHYKDGHPITDELLEKLVASRLVNTGLLTLRQIVLSKVDQSLH 566
Query: 448 TNYVPGGSESVFDVDQRVSK-TTQVL--PPLPEDRFLCSFSHIFXXXXXXXXXSYKWAEV 504
TN + D +K T++L P +F H+ W+EV
Sbjct: 567 TN-------ATLDAASEYAKYCTEILGVAATPGTNMPATFGHLAGGYDGQYYGYL-WSEV 618
Query: 505 LSADAF-SAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLLR 563
S D F S F+ G+ + + G ++R IL GG +++ F REP+ + L
Sbjct: 619 FSMDMFHSCFKKEGIMNP----EVGMKYRNLILKPGGSLDGMDMLQNFLQREPNQKAFLM 674
Query: 564 HNGL 567
GL
Sbjct: 675 SRGL 678
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 142/484 (29%), Positives = 233/484 (48%), Gaps = 31/484 (6%)
Query: 94 WIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLG 153
+ +TL P + VM+ R ++ A+ +R +NT I+ ++L LR + AKLLG
Sbjct: 216 YKVTLKYPHYFPVMKKCCVPETRRKMEMAFHTRCKQ---ENTAILQQLLPLRAQVAKLLG 272
Query: 154 YKNYAEVSMAMKMA-TVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQG---ALEAD-K 208
Y +A+ + + A + + L+ L + E + S K + E D K
Sbjct: 273 YNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAEREFILSLKKKECEERGFEYDGK 332
Query: 209 LDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADGLAPVW 268
++ WD+ ++ + E KY +++E L+ YF + V +GL ++ + L G+ E A VW
Sbjct: 333 INAWDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSFEQVPD-AHVW 391
Query: 269 NNDVRFYCVKD-SSGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVA 327
N V Y VKD ++G + FY D Y R + A + L +G+ + VA
Sbjct: 392 NKSVSLYTVKDKATGEVLGQFYLDLYPREGKYNHAACFG---LQPGCLLPDGS-RMMSVA 447
Query: 328 HMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPS 387
+V N + PV +PSL+ EV T FHEFGH + + + D + +G +E D VE+PS
Sbjct: 448 ALVVNFSQPVAGRPSLLRHDEVRTYFHEFGHVMHQICAQTDFARFSGT-NVETDFVEVPS 506
Query: 388 QFMENWCYHRDTLMSIAKHYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELH 447
Q +ENW + D+L ++KHY+ G + +++ KL+A+R G +LRQ+ + VD LH
Sbjct: 507 QMLENWVWDVDSLRKLSKHYKDGHPITDELLEKLVASRLVNTGLLTLRQIVLSKVDQSLH 566
Query: 448 TNYVPGGSESVFDVDQRVSK-TTQVL--PPLPEDRFLCSFSHIFXXXXXXXXXSYKWAEV 504
TN + D +K T++L P +F H+ W+EV
Sbjct: 567 TN-------ATLDAASEYAKYCTEILGVAATPGTNMPATFGHLAGGYDGQYYGYL-WSEV 618
Query: 505 LSADAF-SAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLLR 563
S D F S F+ G+ + + G ++R IL GG +++ F REP+ + L
Sbjct: 619 FSMDMFHSCFKKEGIMNP----EVGMKYRNLILKPGGSLDGMDMLQNFLQREPNQKAFLM 674
Query: 564 HNGL 567
GL
Sbjct: 675 SRGL 678
>pdb|3SKS|A Chain A, Crystal Structure Of A Putative Oligoendopeptidase F From
Bacillus Anthracis Str. Ames
Length = 567
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 109 HAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMKMAT 168
K R R+ AY + + + I D ++K+R + AK LG+KN+ E+ A +M
Sbjct: 170 QGKERSERKAASEAYYGFLAENEEELDRIYDELVKVRTKIAKSLGFKNFVELGYA-RMYR 228
Query: 169 VDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDIGF 216
D E++ + D V +L+ + Q + +KL ++D F
Sbjct: 229 TDYNAEMVANYRQQVLDYIVPVTTELR--KRQQARIGVEKLAYYDENF 274
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 335 PPVGDKPSLMTFREVETVFH---EFGHALQHMLTKQDESLVAGIRGIEWDAVELP 386
P GD+ M ++ET++H EFG M++ DE G R I W ++LP
Sbjct: 128 PMEGDEELRMLAFDIETLYHEGEEFGEGPILMISYADEE---GARVITWKNIDLP 179
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 6 VCAAQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVL-----DATKKFEKLITD 60
V + Q+ +A+ G + +EQ IEQ + + + +++VL KKFE LIT+
Sbjct: 459 VWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITE 518
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 6 VCAAQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVL-----DATKKFEKLITD 60
V + Q+ +A+ G + +EQ IEQ + + + +++VL KKFE LIT+
Sbjct: 459 VWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITE 518
>pdb|3EFM|A Chain A, Structure Of The Alcaligin Outer Membrane Recepteur Faua
From Bordetella Pertussis
Length = 707
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 255 GIDIEPADGLAPVWNNDVRF--YCVKDSSGSPI 285
GID+E + + P WN + + KD+SG+PI
Sbjct: 566 GIDLEASGQILPDWNIGASYTHFTTKDASGNPI 598
>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1
pdb|3QFV|B Chain B, Mrck Beta In Complex With Tpca-1
Length = 415
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 415 EDVYLKLLAARTFRAGSFSLRQLR----FASVDLE----LHTNYVPGGSE----SVFDVD 462
+D+ +L+ +R R G + + F ++ E L Y+P S S FDVD
Sbjct: 314 KDLIQRLICSRERRLGQNGIEDFKKHAFFEGLNWENIRNLEAPYIPDVSSPSDTSNFDVD 373
Query: 463 QRVSKTTQVLPP 474
V + T++LPP
Sbjct: 374 DDVLRNTEILPP 385
>pdb|3AHM|A Chain A, Pz Peptidase A
pdb|3AHM|B Chain B, Pz Peptidase A
pdb|3AHN|A Chain A, Pz Peptidase A With Inhibitor 1
pdb|3AHN|B Chain B, Pz Peptidase A With Inhibitor 1
pdb|3AHO|A Chain A, Pz Peptidase A With Inhibitor 2
pdb|3AHO|B Chain B, Pz Peptidase A With Inhibitor 2
Length = 564
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 137 IIDRILKLRLEKAKLLGYKNYAEVSMAMKMATVDKAFELLEKLQSASWDPAVQDMEDLKS 196
I D+++K+R A+ LG+KN+ E+ A ++ D E++ K + V L+
Sbjct: 195 IYDQLVKVRTAIAQKLGFKNFVELGYA-RLGRTDYNAEMVAKFRKQVEKHIVPIAVKLRE 253
Query: 197 FSKSQGALEADKLDHWDIGF 216
+ + +E KL ++D F
Sbjct: 254 RQRERIGVE--KLKYYDEAF 271
>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil
pdb|3TKU|B Chain B, Mrck Beta In Complex With Fasudil
Length = 433
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 415 EDVYLKLLAARTFRAGSFSLRQLR----FASVDLE----LHTNYVPGGSE----SVFDVD 462
+D+ +L+ +R R G + + F ++ E L Y+P S S FDVD
Sbjct: 330 KDLIQRLICSRERRLGQNGIEDFKKHAFFEGLNWENIRNLEAPYIPDVSSPSDTSNFDVD 389
Query: 463 QRVSKTTQVLPP 474
V + T++LPP
Sbjct: 390 DDVLRNTEILPP 401
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,497,561
Number of Sequences: 62578
Number of extensions: 679591
Number of successful extensions: 1727
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1690
Number of HSP's gapped (non-prelim): 19
length of query: 574
length of database: 14,973,337
effective HSP length: 104
effective length of query: 470
effective length of database: 8,465,225
effective search space: 3978655750
effective search space used: 3978655750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)