Query 045994
Match_columns 574
No_of_seqs 183 out of 1662
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:37:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0339 Dcp Zn-dependent oligo 100.0 6E-136 1E-140 1084.9 58.1 548 3-568 133-682 (683)
2 PRK10280 dipeptidyl carboxypep 100.0 2E-129 5E-134 1081.5 62.0 545 3-568 132-680 (681)
3 PRK10911 oligopeptidase A; Pro 100.0 6E-124 1E-128 1042.6 62.2 548 3-568 126-679 (680)
4 KOG2089 Metalloendopeptidase f 100.0 2E-124 5E-129 979.9 48.3 551 3-572 156-713 (718)
5 KOG2090 Metalloendopeptidase f 100.0 3E-112 7E-117 877.3 47.2 529 4-565 158-689 (704)
6 cd06457 M3A_MIP Peptidase M3 m 100.0 2E-101 5E-106 830.9 46.2 444 105-563 1-456 (458)
7 cd06456 M3A_DCP_Oligopeptidase 100.0 9.1E-99 2E-103 799.8 46.5 421 133-567 1-422 (422)
8 cd06455 M3A_TOP Peptidase M3 T 100.0 7.2E-97 2E-101 800.4 51.6 468 31-565 1-472 (472)
9 PF01432 Peptidase_M3: Peptida 100.0 2.5E-90 5.5E-95 750.7 34.7 449 106-567 1-458 (458)
10 cd06258 Peptidase_M3_like The 100.0 8.7E-64 1.9E-68 527.9 39.4 360 136-565 2-365 (365)
11 TIGR00181 pepF oligoendopeptid 100.0 1.9E-53 4.1E-58 475.3 25.0 439 6-564 130-576 (591)
12 TIGR02289 M3_not_pepF oligoend 100.0 1.9E-51 4.2E-56 453.8 34.5 377 95-557 143-528 (549)
13 cd06459 M3B_Oligoendopeptidase 100.0 8E-53 1.7E-57 453.8 21.3 387 91-564 29-421 (427)
14 TIGR02290 M3_fam_3 oligoendope 100.0 1.6E-48 3.6E-53 434.4 27.6 383 95-564 184-572 (587)
15 COG1164 Oligoendopeptidase F [ 100.0 4.4E-40 9.6E-45 362.3 33.8 385 95-564 189-580 (598)
16 cd06461 M2_ACE Peptidase famil 99.9 8.2E-23 1.8E-27 218.9 27.7 385 99-563 32-464 (477)
17 cd06460 M32_Taq Peptidase fami 99.9 1.1E-19 2.3E-24 189.9 31.4 337 135-565 30-391 (396)
18 PF02074 Peptidase_M32: Carbox 99.5 1.4E-10 3E-15 124.9 32.6 338 135-565 130-490 (494)
19 COG2317 Zn-dependent carboxype 99.3 3.5E-09 7.6E-14 109.9 26.3 357 115-565 108-491 (497)
20 PF01401 Peptidase_M2: Angiote 99.2 1.5E-09 3.2E-14 119.9 24.5 472 19-565 43-568 (595)
21 KOG3690 Angiotensin I-converti 98.9 1.7E-05 3.6E-10 85.0 36.7 445 61-565 111-597 (646)
22 COG2856 Predicted Zn peptidase 91.6 0.14 3.1E-06 49.6 2.9 29 323-361 57-85 (213)
23 cd04277 ZnMc_serralysin_like Z 88.8 3 6.5E-05 39.5 9.5 30 242-274 38-67 (186)
24 PF06114 DUF955: Domain of unk 87.3 0.52 1.1E-05 40.5 3.0 32 324-365 28-59 (122)
25 PF14247 DUF4344: Domain of un 81.8 0.74 1.6E-05 44.9 1.5 19 347-365 91-109 (220)
26 PF00413 Peptidase_M10: Matrix 81.3 0.72 1.6E-05 42.0 1.2 15 347-361 104-118 (154)
27 cd04278 ZnMc_MMP Zinc-dependen 74.9 1.2 2.7E-05 40.9 0.7 17 345-361 104-120 (157)
28 cd04279 ZnMc_MMP_like_1 Zinc-d 74.2 1.5 3.3E-05 40.2 1.1 15 347-361 103-117 (156)
29 PF13058 DUF3920: Protein of u 73.8 1.9 4E-05 36.7 1.4 17 345-361 73-89 (126)
30 cd04268 ZnMc_MMP_like Zinc-dep 73.8 1.6 3.4E-05 40.3 1.2 15 347-361 93-107 (165)
31 PF13398 Peptidase_M50B: Pepti 72.0 2.2 4.8E-05 41.1 1.8 24 346-369 20-43 (200)
32 PF14891 Peptidase_M91: Effect 71.6 2.1 4.6E-05 40.2 1.5 23 345-367 100-122 (174)
33 PF13688 Reprolysin_5: Metallo 68.4 2.4 5.2E-05 40.4 1.1 16 345-360 139-154 (196)
34 PRK13267 archaemetzincin-like 68.0 8.8 0.00019 36.3 4.8 14 282-295 71-84 (179)
35 smart00235 ZnMc Zinc-dependent 67.5 2.3 5E-05 38.1 0.8 11 350-360 88-98 (140)
36 PF13582 Reprolysin_3: Metallo 66.7 2.6 5.6E-05 36.8 0.9 13 348-360 107-119 (124)
37 PF13583 Reprolysin_4: Metallo 65.5 7.7 0.00017 37.5 4.0 15 346-360 135-149 (206)
38 PF13574 Reprolysin_2: Metallo 65.4 3.3 7.2E-05 38.8 1.4 13 348-360 111-123 (173)
39 cd04327 ZnMc_MMP_like_3 Zinc-d 64.1 3.1 6.7E-05 39.9 1.0 14 348-361 92-105 (198)
40 cd00203 ZnMc Zinc-dependent me 61.5 3.6 7.9E-05 37.8 0.9 23 240-262 24-46 (167)
41 PF05572 Peptidase_M43: Pregna 59.7 4.4 9.5E-05 37.3 1.1 17 345-361 66-82 (154)
42 PF04228 Zn_peptidase: Putativ 57.6 5.1 0.00011 40.9 1.2 22 345-366 167-188 (292)
43 PF12388 Peptidase_M57: Dual-a 53.6 5.7 0.00012 38.4 0.8 12 350-361 135-146 (211)
44 cd04280 ZnMc_astacin_like Zinc 52.3 6.1 0.00013 37.3 0.8 13 349-361 75-87 (180)
45 cd04272 ZnMc_salivary_gland_MP 50.2 7.9 0.00017 37.7 1.2 16 345-360 142-157 (220)
46 cd04271 ZnMc_ADAM_fungal Zinc- 50.0 5.2 0.00011 39.4 -0.1 14 347-360 144-157 (228)
47 cd04270 ZnMc_TACE_like Zinc-de 49.4 7.9 0.00017 38.5 1.1 13 348-360 167-179 (244)
48 PF02031 Peptidase_M7: Strepto 48.7 9.7 0.00021 33.6 1.4 17 345-361 74-90 (132)
49 cd04283 ZnMc_hatching_enzyme Z 48.3 8.2 0.00018 36.6 0.9 13 349-361 78-90 (182)
50 PF04298 Zn_peptidase_2: Putat 47.2 15 0.00033 35.7 2.6 20 345-364 86-105 (222)
51 PF02163 Peptidase_M50: Peptid 46.9 10 0.00022 36.0 1.3 22 349-370 8-29 (192)
52 PF01400 Astacin: Astacin (Pep 46.9 9.6 0.00021 36.4 1.2 14 348-361 79-92 (191)
53 cd04267 ZnMc_ADAM_like Zinc-de 46.1 8 0.00017 36.7 0.5 16 345-360 130-145 (192)
54 PF10460 Peptidase_M30: Peptid 45.6 12 0.00027 39.2 1.9 46 347-396 138-184 (366)
55 TIGR03296 M6dom_TIGR03296 M6 f 43.2 6 0.00013 40.4 -0.9 14 348-361 165-178 (286)
56 cd04281 ZnMc_BMP1_TLD Zinc-dep 43.2 11 0.00023 36.3 0.9 13 349-361 88-100 (200)
57 cd06163 S2P-M50_PDZ_RseP-like 43.1 12 0.00027 35.4 1.3 20 349-368 10-29 (182)
58 cd04269 ZnMc_adamalysin_II_lik 42.7 12 0.00025 35.6 1.1 15 346-360 129-143 (194)
59 PF09471 Peptidase_M64: IgA Pe 42.6 12 0.00025 37.8 1.1 19 347-365 215-233 (264)
60 cd05709 S2P-M50 Site-2 proteas 41.6 13 0.00029 34.8 1.3 19 349-367 9-27 (180)
61 cd06161 S2P-M50_SpoIVFB SpoIVF 41.3 14 0.00029 35.9 1.3 17 349-365 39-55 (208)
62 PF13485 Peptidase_MA_2: Pepti 41.1 14 0.00031 31.6 1.3 18 349-366 26-43 (128)
63 cd04276 ZnMc_MMP_like_2 Zinc-d 40.0 14 0.0003 35.5 1.1 13 349-361 117-129 (197)
64 PF01435 Peptidase_M48: Peptid 39.6 18 0.00039 34.9 1.9 20 345-364 85-105 (226)
65 KOG3658 Tumor necrosis factor- 37.3 44 0.00096 37.6 4.5 20 281-302 338-357 (764)
66 PF13699 DUF4157: Domain of un 37.0 18 0.00038 29.3 1.1 18 345-362 58-75 (79)
67 cd04282 ZnMc_meprin Zinc-depen 34.7 17 0.00037 35.8 0.8 13 349-361 121-133 (230)
68 COG2738 Predicted Zn-dependent 34.7 27 0.00058 33.2 2.0 19 345-363 89-107 (226)
69 cd06159 S2P-M50_PDZ_Arch Uncha 34.0 21 0.00045 36.0 1.3 16 349-364 119-134 (263)
70 cd06164 S2P-M50_SpoIVFB_CBS Sp 32.1 23 0.0005 34.8 1.3 16 349-364 54-69 (227)
71 cd04275 ZnMc_pappalysin_like Z 29.5 11 0.00024 37.0 -1.5 17 345-361 134-150 (225)
72 cd06162 S2P-M50_PDZ_SREBP Ster 29.3 28 0.0006 35.3 1.3 16 349-364 136-151 (277)
73 PF11324 DUF3126: Protein of u 29.3 1.4E+02 0.0031 23.0 4.8 41 245-293 4-47 (63)
74 KOG2661 Peptidase family M48 [ 28.7 45 0.00098 34.3 2.7 49 349-397 276-329 (424)
75 KOG3607 Meltrins, fertilins an 28.4 37 0.0008 39.2 2.3 16 345-360 320-335 (716)
76 cd04273 ZnMc_ADAMTS_like Zinc- 28.4 14 0.00031 35.5 -0.9 15 346-360 138-152 (207)
77 PF01418 HTH_6: Helix-turn-hel 27.8 53 0.0011 26.1 2.5 17 147-163 53-69 (77)
78 PF01421 Reprolysin: Reprolysi 27.7 30 0.00065 32.9 1.2 16 345-360 128-143 (199)
79 PF05548 Peptidase_M11: Gameto 27.5 27 0.00059 36.1 0.9 15 347-361 149-163 (314)
80 PF01742 Peptidase_M27: Clostr 26.2 38 0.00081 35.7 1.6 25 342-366 208-232 (408)
81 PF10462 Peptidase_M66: Peptid 26.2 31 0.00067 35.4 1.1 16 345-360 190-205 (305)
82 KOG2921 Intramembrane metallop 26.1 63 0.0014 34.1 3.2 46 323-368 104-151 (484)
83 PF01447 Peptidase_M4: Thermol 26.1 36 0.00077 31.2 1.3 14 348-361 135-148 (150)
84 COG5549 Predicted Zn-dependent 25.3 36 0.00078 32.7 1.2 22 340-361 179-200 (236)
85 cd06160 S2P-M50_like_2 Unchara 25.3 37 0.00079 32.2 1.3 16 350-365 43-58 (183)
86 PRK14127 cell division protein 24.8 1E+02 0.0022 26.7 3.7 27 168-195 24-50 (109)
87 PF13767 DUF4168: Domain of un 24.2 2.7E+02 0.006 22.1 6.1 76 22-119 2-78 (78)
88 COG0501 HtpX Zn-dependent prot 23.6 36 0.00078 34.5 1.0 18 344-361 152-170 (302)
89 TIGR00054 RIP metalloprotease 23.4 39 0.00085 36.5 1.3 19 348-366 14-32 (420)
90 COG4227 Antirestriction protei 22.2 39 0.00084 33.6 0.8 15 346-360 201-215 (316)
91 PRK03982 heat shock protein Ht 22.1 40 0.00086 34.4 0.9 18 345-362 121-139 (288)
92 PF05062 RICH: RICH domain; I 21.7 3.6E+02 0.0077 22.0 6.0 60 6-75 14-73 (82)
93 PF10398 DUF2443: Protein of u 20.9 2.5E+02 0.0054 22.3 4.8 64 136-200 7-75 (79)
94 PTZ00337 surface protease GP63 20.8 64 0.0014 36.2 2.3 33 323-360 209-241 (567)
95 PF07998 Peptidase_M54: Peptid 20.4 51 0.0011 31.5 1.2 21 341-361 138-158 (194)
96 PF05547 Peptidase_M6: Immune 20.4 23 0.00049 40.3 -1.4 13 348-360 221-233 (645)
97 PRK02870 heat shock protein Ht 20.3 46 0.00099 34.8 0.9 20 344-363 168-188 (336)
98 PRK03001 M48 family peptidase; 20.3 45 0.00098 33.9 0.9 18 345-362 120-138 (283)
99 KOG3714 Meprin A metalloprotea 20.2 43 0.00094 36.0 0.8 19 349-367 160-178 (411)
100 PRK10779 zinc metallopeptidase 20.0 51 0.0011 35.9 1.3 18 349-366 16-33 (449)
No 1
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-136 Score=1084.93 Aligned_cols=548 Identities=49% Similarity=0.858 Sum_probs=519.4
Q ss_pred HHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCChhhhcCCCHHHHHHHHHHHHhc
Q 045994 3 YIGVCAAQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPATALGLAAQTALSK 82 (574)
Q Consensus 3 ~~~~l~~~~~~f~~~G~~L~~~~r~~~~~l~~~i~~l~~~f~~n~~~~~~~~~~~~~~~~eL~g~p~~~~~~~~~~~~~~ 82 (574)
.+|+|+..+++|+++|+.|++++|+|+.+|++|+++|+++|++|+.+++..|..++.++++|+|+|+..+++++++|..+
T Consensus 133 ~~r~~e~~~rdF~~sGa~L~~~~k~r~~~I~~ela~L~~~Fs~nvL~at~~~~~~~~~~~~LaGlp~~~l~aa~~~A~~k 212 (683)
T COG0339 133 QKRVVENALRDFVLSGAKLPPEKKARLAEINTELAELGAQFSNNVLDATKAWALIVTDEAELAGLPESLLAAAAAAAEAK 212 (683)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeecCcHHHhcCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999888889999999999999999988877
Q ss_pred CCCCCCCCCCceEEeecCCcHHHHhhcCCCHHHHHHHHHHHhcccCCCC-CCcHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 045994 83 GHENATAENGPWIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGD-LDNTPIIDRILKLRLEKAKLLGYKNYAEVS 161 (574)
Q Consensus 83 g~~~~~~~~g~~~~~~~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~~~-~~n~~~l~~ll~lR~~~A~llGy~s~a~~~ 161 (574)
|. ++|.||++.++|.++|++|.||++||++|+|+.+|++++. .+|.+++.++|++|.++|+||||+|||+|+
T Consensus 213 g~-------~~~~itl~~p~~~p~l~~~~~r~lRe~~y~A~~~ra~~~~~~~n~~ii~~~L~LR~E~A~LLGf~~yA~~~ 285 (683)
T COG0339 213 GL-------EGYLITLDIPSYLPVLTYADNRALREKLYRAYVTRASEGGPNDNRAIIEEILKLRAELAKLLGFSNYAEYS 285 (683)
T ss_pred CC-------CCeEEeecccchhHHHHhcccHHHHHHHHHHHhhhccccCCcccHHHHHHHHHHHHHHHHHcCcccHHHHh
Confidence 75 3599999999999999999999999999999999988753 459999999999999999999999999999
Q ss_pred HHhhcC-CHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHhcCCCchhccCCCChh
Q 045994 162 MAMKMA-TVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDIGFWSERLRESKYEINEEELRPYFSLP 240 (574)
Q Consensus 162 l~~~m~-~pe~v~~fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~ 240 (574)
|.++|+ +|+.|.+||++|..+.+|.+++|++.|++++++. ..+..++.|||+.||.+++++.+|++|+++|++|||++
T Consensus 286 L~~kMA~~p~~Vl~fL~~l~~ka~~~a~~e~a~L~~~~~~~-~~~~~~l~~WD~~yyaeK~r~~~y~~de~elrpYF~l~ 364 (683)
T COG0339 286 LADKMAKTPEAVLNFLNDLAEKARPQAEKELAELQAFAAEE-EGGLPELQPWDWAYYAEKQRQEKYAFDEEELRPYFPLN 364 (683)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh-ccCCcccchhhHHHHHHHHHhhhcCCCHHHhhhcCChh
Confidence 999999 9999999999999999999999999999998864 13678999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcceeeeCCCCCCccccceeEEEEEcCCCCceeEeeccCCCCCCCCCCCccccccccccccccCCCC
Q 045994 241 KVMDGLFNLAKTLFGIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGT 320 (574)
Q Consensus 241 ~vl~gl~~~~~~lfgi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~~~g~ 320 (574)
.||+|||.++++||||+|+|..+ .++||||||+|+|+|++|..+|.||+|+|+|+| |+|||||..+++|.... +|+
T Consensus 365 ~Vl~GlF~~~~rLfGI~~~e~~~-~~vwHpDVr~~~v~d~~g~~~g~fY~DlyaR~~-KrgGAWM~~~~~~~~~~--~~~ 440 (683)
T COG0339 365 KVLEGLFEVAKRLFGITFVERKD-IPVWHPDVRVFEVFDENGELIGLFYLDLYARDG-KRGGAWMDDFVSQRRLD--DGG 440 (683)
T ss_pred HHHHHHHHHHHHHcCeEEEECCC-CCccCCCceEEEEEcCCCCEEEEEEeecccCCC-CccchHHHHhhhccccc--CCC
Confidence 99999999999999999999843 799999999999999999999999999999999 89999999988765432 332
Q ss_pred ccccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcCHHHH
Q 045994 321 TSRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYHRDTL 400 (574)
Q Consensus 321 ~~~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~~~vL 400 (574)
.|.|+++++|||.+|.+++|+||+|+||.||||||||+||+||++++|+.+|||+ |+|||||+|||+||+|||+|++|
T Consensus 441 -~q~PV~ylvCNF~~p~~gkPaLls~dEV~TLFHEfGHgLH~mlt~v~~~~vsGt~-v~wDfVElPSQ~mE~w~~~p~vL 518 (683)
T COG0339 441 -GQKPVIYLVCNFTKPVGGKPALLSHDEVTTLFHEFGHGLHHLLTRVKYPGVSGTN-VPWDFVELPSQFMENWCWEPEVL 518 (683)
T ss_pred -cccceEEEeccCCCCCCCCCceeeHHHHHHHHHHhhhHHHHHhhcCCccccCCCC-CCcchhhccHHHHHHhhcCHHHH
Confidence 5899999999999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred HHHHhhccCCCCCcHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHhcCCCCCCCCCCC
Q 045994 401 MSIAKHYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELHTNYVPGGSESVFDVDQRVSKTTQVLPPLPEDRF 480 (574)
Q Consensus 401 ~~~~~h~~t~~~lp~~~~~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 480 (574)
..+++||+||+|||+++++++.++++|++|+.+++|+.+|+|||.+|...+|....++.++++++.++...++.++..+|
T Consensus 519 ~~~a~Hy~TGe~lP~~ll~k~laaknf~~g~~t~rql~fal~Dm~~H~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~~~~ 598 (683)
T COG0339 519 AKYARHYQTGEPLPKELLDKMLAAKNFQAGLFTLRQLEFALFDMRLHTEFDPDANADILEFEAEVLKKVAVLPSIPPRRR 598 (683)
T ss_pred HHHHHhhccCCcCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccCCcccccCHHHHHHHHHHHhCCCCCcchhhc
Confidence 99999999999999999999999999999999999999999999999987776778899999999999888776677889
Q ss_pred CCcccccccCCcccchhhHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCCchH
Q 045994 481 LCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEP 560 (574)
Q Consensus 481 ~~~f~Hl~~~~Y~a~YY~Yl~a~~~A~~i~~~f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~~~~ 560 (574)
..+|+|||+|||+||||||+|++|+++|+|++|.+.|..+ +++|++||+.||+.|||++|++++++|+||+|+.++
T Consensus 599 ~~~F~HIFagGYsAGYYSY~WaeVLsaDafa~Fee~g~~~----~e~G~rfrd~ILs~GGS~dp~e~f~~frGrep~~da 674 (683)
T COG0339 599 PHSFGHIFAGGYSAGYYSYLWAEVLSADAFAAFEEEGPFN----RETGQRFRDAILSRGGSRDPMELFKAFRGREPSIDA 674 (683)
T ss_pred cccccceecCcccchhHHHHHHHHHhhHHHHHHHhcCCCC----HHHHHHHHHHHHhccCCcCHHHHHHHHhcCCCChhH
Confidence 9999999999999999999999999999999999998766 899999999999999999999999999999999999
Q ss_pred HHHhCCCC
Q 045994 561 LLRHNGLL 568 (574)
Q Consensus 561 ~~~~~g~~ 568 (574)
++++.|+.
T Consensus 675 lLr~~Gl~ 682 (683)
T COG0339 675 LLRHRGLA 682 (683)
T ss_pred HHHhcCCC
Confidence 99999985
No 2
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=100.00 E-value=2.3e-129 Score=1081.53 Aligned_cols=545 Identities=32% Similarity=0.583 Sum_probs=499.7
Q ss_pred HHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCChhhhcCCCHHHHHHHHHHHHhc
Q 045994 3 YIGVCAAQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPATALGLAAQTALSK 82 (574)
Q Consensus 3 ~~~~l~~~~~~f~~~G~~L~~~~r~~~~~l~~~i~~l~~~f~~n~~~~~~~~~~~~~~~~eL~g~p~~~~~~~~~~~~~~ 82 (574)
.+|++++++++|+++||+|++++|+++++|+.+|++|+++|.+|+.++++.+...+.++++|+|+|+++++.++.++..+
T Consensus 132 ~~r~l~~~l~dF~~sG~~L~~~~r~r~~~l~~~l~~L~~~F~~n~~~~~~~~~~~~~~~~eL~Glp~~~~~~~~~~a~~~ 211 (681)
T PRK10280 132 SIRLVEVIHQRFVLAGAKLAQADKAKLKVLNTEAATLTSQFNQRLLAANKSGGLVVNDIHQLAGLSEQEIALAAEAAREK 211 (681)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcCeeecCCHHHHcCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999998887666678999999999999998776655
Q ss_pred CCCCCCCCCCceEEeecCCcHHHHhhcCCCHHHHHHHHHHHhcccCC-CCCCcHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 045994 83 GHENATAENGPWIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASS-GDLDNTPIIDRILKLRLEKAKLLGYKNYAEVS 161 (574)
Q Consensus 83 g~~~~~~~~g~~~~~~~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~-~~~~n~~~l~~ll~lR~~~A~llGy~s~a~~~ 161 (574)
|. +|+|.|+++++++.++|++|+||++||++|+|+.++++. +..+|.++|.+|+++|+++|++|||+|||+|+
T Consensus 212 g~------~g~~~itl~~~~~~p~l~~~~dr~~Re~~~~A~~~r~~~~~~~dn~~il~~ll~lR~e~A~lLGf~~yA~~~ 285 (681)
T PRK10280 212 GL------DNRWLIPLLNTTQQPALAELRDRQTRENLFAAGWTRAEKGDANDTRAIIQRLVEIRAQQAKLLGFPHYAAWK 285 (681)
T ss_pred CC------CCcEEEeCcCCcHhHHHhcCCCHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 53 366999999999999999999999999999999999875 34689999999999999999999999999999
Q ss_pred HHhhcC-CHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHhcCCCchhccCCCChh
Q 045994 162 MAMKMA-TVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDIGFWSERLRESKYEINEEELRPYFSLP 240 (574)
Q Consensus 162 l~~~m~-~pe~v~~fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~ 240 (574)
+.++|+ ||++|.+||+.|.+.++|.+++|++.|++++++.. +...|+|||+.||++++++++|++|++++++|||++
T Consensus 286 l~~kMa~spe~V~~FL~~L~~~~~~~a~~E~~~L~~~~~~~~--g~~~l~pWD~~yy~ek~r~~~~~~d~~~l~~YFpl~ 363 (681)
T PRK10280 286 IADQMAKTPEAALNFMREIVPAARQRASDELASIQAVIDKQQ--GGFSAQAWDWAFYAEQVRREKYALDEAQLKPYFELN 363 (681)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCChhHHHHHHHHHHHHhcCCCHHHcCCcCcHH
Confidence 999999 99999999999999999999999999999887542 345799999999999999999999999999999999
Q ss_pred hHH-HHHHHHHHHHhcceeeeCCCCCCccccceeEEEEEcCCCCceeEeeccCCCCCCCCCCCccccccccccccccCCC
Q 045994 241 KVM-DGLFNLAKTLFGIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNG 319 (574)
Q Consensus 241 ~vl-~gl~~~~~~lfgi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~~~g 319 (574)
.|+ +||+.++++||||+|+++++ .++|||||++|+|+|++|.+||+||+|+|+|+| |++||||..+..+... +
T Consensus 364 ~Vl~~Glf~l~~~LfGi~f~~~~~-~~vWh~dV~~~~V~d~~g~~lG~fY~Dl~~R~g-K~~gawm~~~~~~~~~---~- 437 (681)
T PRK10280 364 TVLNEGVFWTANQLFGIKFVERFD-IPVYHPDVRVWEIFDHNGVGLALFYGDFFARDS-KSGGAWMGNFVEQSTL---N- 437 (681)
T ss_pred HHHHHhHHHHHHHHcCeEEEECCC-CCCCCCCeeEEEEEcCCCCEEEEEEecCCCCCC-CCCCCCCccccccccc---C-
Confidence 999 69999999999999999764 479999999999999888999999999999999 7899999876644321 1
Q ss_pred CccccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcCHHH
Q 045994 320 TTSRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYHRDT 399 (574)
Q Consensus 320 ~~~~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~~~v 399 (574)
.+.|+++++|||++|++++|+||+|+||+|||||||||||++|++++|+++|||+ +++||||+||||||+|||+|+|
T Consensus 438 --~~~Pv~~lvcNf~~p~~~~p~LL~~~eV~TlFHEfGHalH~lls~~~y~~~sGt~-v~~DfVE~PSq~mE~w~~~~~v 514 (681)
T PRK10280 438 --ETRPVIYNVCNYQKPAAGQPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTN-TPRDFVEFPSQINEHWASHPQV 514 (681)
T ss_pred --CCCCeEEEECCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-CCcchhcCcHHHHHHHhcCHHH
Confidence 3579999999999999999999999999999999999999999999999999997 7999999999999999999999
Q ss_pred HHHHHhhccCCCCCcHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHhcCC-CCCCCCC
Q 045994 400 LMSIAKHYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELHTNYVPGGSESVFDVDQRVSKTTQV-LPPLPED 478 (574)
Q Consensus 400 L~~~~~h~~t~~~lp~~~~~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 478 (574)
|+.||+||+||+|||++++++|++++++++|+.+++|+.+|+|||.+|.........++..++.++.+++.. ++.++++
T Consensus 515 L~~~a~Hy~TgepiP~~l~~~l~~ar~~~~g~~~~~ql~~al~D~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (681)
T PRK10280 515 FARYARHYQSGEAMPDELQEKMRNASLFNKGYDMSELLSAALLDMRWHCLEENEAMQDVDDFELRALVAENLDLPAVPPR 594 (681)
T ss_pred HHHHhhccCCCCCCCHHHHHHHHHhhCcchHHHHHHHHHHHHHhHHHhccCcccccccHHHHHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999753221223567777677776654 5667788
Q ss_pred CCCCcccccccCCcccchhhHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCCc
Q 045994 479 RFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSP 558 (574)
Q Consensus 479 ~~~~~f~Hl~~~~Y~a~YY~Yl~a~~~A~~i~~~f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~~ 558 (574)
+|+++|+|||+|||+||||||+||+|+|+|+|+.|++++..+ +++|++||++||++|||+||+++|++|+||+|+.
T Consensus 595 ~~~~~F~Hif~ggY~AgYYsYlwaevlaaD~f~~f~~~g~~n----~~~G~~fr~~iL~~GGs~d~~~~~~~FlGR~P~~ 670 (681)
T PRK10280 595 YRSSYFAHIFGGGYAAGYYAYLWTQMLADDGYQWFVEQGGLT----RENGQRFREAILSRGNSTDLERLYRQWRGHAPQI 670 (681)
T ss_pred CCCCcccccccCCcchhhHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHhhcCCCcCHHHHHHHhcCCCCCh
Confidence 899999999988999999999999999999999998876444 7999999999999999999999999999999999
Q ss_pred hHHHHhCCCC
Q 045994 559 EPLLRHNGLL 568 (574)
Q Consensus 559 ~~~~~~~g~~ 568 (574)
++|++++||.
T Consensus 671 ~alL~~~Gl~ 680 (681)
T PRK10280 671 MPMLQHRGLN 680 (681)
T ss_pred HHHHHhcCCC
Confidence 9999999985
No 3
>PRK10911 oligopeptidase A; Provisional
Probab=100.00 E-value=5.9e-124 Score=1042.56 Aligned_cols=548 Identities=43% Similarity=0.814 Sum_probs=508.1
Q ss_pred HHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCChhhhcCCCHHHHHHHHHHHHhc
Q 045994 3 YIGVCAAQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPATALGLAAQTALSK 82 (574)
Q Consensus 3 ~~~~l~~~~~~f~~~G~~L~~~~r~~~~~l~~~i~~l~~~f~~n~~~~~~~~~~~~~~~~eL~g~p~~~~~~~~~~~~~~ 82 (574)
++|++++++++|+++||+|++++|+++++|+++|++|+++|.+|+.+++..|..++.++++|+|+|+++++.++.++..+
T Consensus 126 ~~r~l~~~~~~F~~sG~~L~~~~r~~~~~i~~~l~~l~~~F~~n~~~~~~~~~~~~~~~~eL~Glp~~~~~~~~~~a~~~ 205 (680)
T PRK10911 126 QKKAVDNALRDFELSGIGLPKEKQQRYGEIAARLSELGNQYSNNVLDATMGWTKLITDEAELAGMPESALAAAKAQAEAK 205 (680)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccceeecCCHHHHCCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999998888888899999999999999998766555
Q ss_pred CCCCCCCCCCceEEeecCCcHHHHhhcCCCHHHHHHHHHHHhcccCC-----CCCCcHHHHHHHHHHHHHHHHHcCCCch
Q 045994 83 GHENATAENGPWIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASS-----GDLDNTPIIDRILKLRLEKAKLLGYKNY 157 (574)
Q Consensus 83 g~~~~~~~~g~~~~~~~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~-----~~~~n~~~l~~ll~lR~~~A~llGy~s~ 157 (574)
|. +| |.|+++.+++.++|++|+|+++||++|+|+.++++. +..+|.++|.+|+++|+++|++|||+||
T Consensus 206 ~~------~g-~~~tl~~p~~~p~L~~~~drelRk~~y~A~~~r~~~~~~~~~~~dN~~il~eil~lR~e~AkLLGy~sy 278 (680)
T PRK10911 206 EQ------EG-YLLTLDIPSYLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSEVMEEILALRHELAQLLGFENY 278 (680)
T ss_pred CC------CC-eEEEeecCcHHHHHhhCCCHHHHHHHHHHHHhhhhhccCcccccchHHHHHHHHHHHHHHHHHcCCCCH
Confidence 53 36 999999999999999999999999999999999875 2457999999999999999999999999
Q ss_pred HHHHHHhhcC-CHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHhcCCCchhccCC
Q 045994 158 AEVSMAMKMA-TVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDIGFWSERLRESKYEINEEELRPY 236 (574)
Q Consensus 158 a~~~l~~~m~-~pe~v~~fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~l~~y 236 (574)
+++++.++|+ ||++|.+||+++.+.++|.+++|++.|++++++. .+.++|.|||+.||.+++++.+|++|++++++|
T Consensus 279 Ad~~L~~kma~spe~V~~fL~~l~~~~~p~a~~El~~L~~~~k~~--~g~~~L~pWD~~yy~~~~~~~~~~~d~~~l~~Y 356 (680)
T PRK10911 279 ADKSLATKMAENPQQVLDFLTDLAKRARPQGEKELAQLRAFAKAE--FGVDELQPWDIAYYSEKQKQHLYSISDEQLRPY 356 (680)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCCChhhHHHHhhHHHHhhcCCCHHHhccc
Confidence 9999999999 9999999999999999999999999999888764 256789999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhcceeeeCCCCCCccccceeEEEEEcCCCCceeEeeccCCCCCCCCCCCcccccccccccccc
Q 045994 237 FSLPKVMDGLFNLAKTLFGIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLS 316 (574)
Q Consensus 237 f~~~~vl~gl~~~~~~lfgi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~ 316 (574)
||++.|++||+.++++||||+|++..+ +++|||||++|+|+|++|.+||+||+|+|+|+| |++||||+.+.++.. .
T Consensus 357 Fpl~~v~~gl~~~~~~Lfgi~~~e~~~-~~vwh~dV~~~~v~d~~~~~iG~~y~D~~~R~g-K~~ga~~~~~~~~~~--~ 432 (680)
T PRK10911 357 FPENKAVNGLFEVVKRIYGITAKERKD-VDVWHPDVRFFELYDENNELRGSFYLDLYAREN-KRGGAWMDDCVGQMR--K 432 (680)
T ss_pred CcHHHHHHHHHHHHHHHcCeeEEecCC-CCCCCCcceEEEEEeCCCCeEEEEEeeccCCCC-CCCCccccccccccc--c
Confidence 999999999999999999999988654 799999999999999888999999999999999 688999987654322 2
Q ss_pred CCCCccccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcC
Q 045994 317 RNGTTSRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYH 396 (574)
Q Consensus 317 ~~g~~~~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~ 396 (574)
.+|+ ++.|+++++|||++|.+++|+||+|+||.|||||||||||++|++++|+.++||+++++||||+|||+||+|||+
T Consensus 433 ~~g~-~~~Pv~~l~~Nf~~p~~~~p~LL~~~~v~tlfHEfGHalH~~ls~~~~~~~sGt~~~~~D~vE~pS~~~E~~~~~ 511 (680)
T PRK10911 433 ADGS-LQKPVAYLTCNFNRPVNGKPALFTHDEVITLFHEFGHGLHHMLTRIETAGVSGISGVPWDAVELPSQFMENWCWE 511 (680)
T ss_pred CCCc-eeCCeEEEECCCCCCCCCCCcccCHHHHHHHHHHHhHHHHHHHhCCCcCcCCCcCCCCchHhhccHHHHHHHhcC
Confidence 3554 688999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCcHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHhcCCCCCCC
Q 045994 397 RDTLMSIAKHYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELHTNYVPGGSESVFDVDQRVSKTTQVLPPLP 476 (574)
Q Consensus 397 ~~vL~~~~~h~~t~~~lp~~~~~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 476 (574)
|+||+.+++||+||+|||++++++++++++++.++.+++|+.+|+||+.+|....+....++.++++++.+++..++..+
T Consensus 512 ~~vL~~~a~H~~tgeplp~~l~~~l~~~~~~~~~~~~~rql~~a~~D~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (680)
T PRK10911 512 PEALAFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGLFDFRLHAEFDPDQGAKILETLAEIKKQVAVVPSPS 591 (680)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999976433223368899999999988767667
Q ss_pred CCCCCCcccccccCCcccchhhHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCC
Q 045994 477 EDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREP 556 (574)
Q Consensus 477 ~~~~~~~f~Hl~~~~Y~a~YY~Yl~a~~~A~~i~~~f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p 556 (574)
+++++++|+|||+|||+||||||+||+++|+|+|+.|++++..+ +++|++||++||++|||++|++++++|+||+|
T Consensus 592 ~~~~~~~F~Hif~gGY~AgYYsYlwa~vla~d~~~~f~~~g~~~----~~~g~~~r~~iL~~Ggs~~p~~~~~~F~GR~P 667 (680)
T PRK10911 592 WGRFPHAFSHIFAGGYAAGYYSYLWADVLAADAFSRFEEEGIFN----RETGQSFLDNILSRGGSEEPMELFKRFRGREP 667 (680)
T ss_pred CCcCCccccccCcCCcccchHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhCcCCcCHHHHHHHhcCCCC
Confidence 78888999999988999999999999999999999999877655 79999999999999999999999999999999
Q ss_pred CchHHHHhCCCC
Q 045994 557 SPEPLLRHNGLL 568 (574)
Q Consensus 557 ~~~~~~~~~g~~ 568 (574)
+.++|++++||.
T Consensus 668 ~~~all~~~gl~ 679 (680)
T PRK10911 668 QLDAMLEHYGIK 679 (680)
T ss_pred ChHHHHHhcCCC
Confidence 999999999985
No 4
>KOG2089 consensus Metalloendopeptidase family - saccharolysin & thimet oligopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-124 Score=979.91 Aligned_cols=551 Identities=50% Similarity=0.842 Sum_probs=510.0
Q ss_pred HHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCChhhhcCCCHHHHHHHHHHHHhc
Q 045994 3 YIGVCAAQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPATALGLAAQTALSK 82 (574)
Q Consensus 3 ~~~~l~~~~~~f~~~G~~L~~~~r~~~~~l~~~i~~l~~~f~~n~~~~~~~~~~~~~~~~eL~g~p~~~~~~~~~~~~~~ 82 (574)
.+|+|++.++++++||++|++++|+++.+|.++|++++.+|++|+++++++++++++|+++|.|+|+++++.++++..+
T Consensus 156 ~~RylE~~ike~k~nGL~L~~~kr~~ik~ikk~l~~l~~~f~~nvne~~~~~t~litd~~el~glPps~L~~la~~~~~- 234 (718)
T KOG2089|consen 156 AQRYLEKLIKEGKLNGLHLDDDKREEIKEIKKELSELSIKFSKNVNEDTKKFTFLITDKKELEGLPPSFLQSLAKDEDD- 234 (718)
T ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeeecHHHhccCCHHHHHHHhhcccC-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999864322
Q ss_pred CCCCCCCCCCceEEeecCCcHHHHhhcCCCHHHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q 045994 83 GHENATAENGPWIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSM 162 (574)
Q Consensus 83 g~~~~~~~~g~~~~~~~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~~~~~n~~~l~~ll~lR~~~A~llGy~s~a~~~l 162 (574)
.+.|+|+||+++++|.+||++|++|++|++||+||..|++.+..+|.++|++|+++|.++|++|||+|||+|+|
T Consensus 235 ------k~sgpwkiTl~~p~~~pvmk~c~~r~tR~~v~~A~~~ra~~~~~eNs~ii~~l~~lR~~lAklLGY~t~Ad~~L 308 (718)
T KOG2089|consen 235 ------KGSGPWKITLKYPHYFPVMKHCKIRQTRKTVWRAYNSRASEGDLENSAIIEQLLKLRLELAKLLGYSTYADYSL 308 (718)
T ss_pred ------CCCCceEEEecccchhHHHHhCCcHHHHHHHHHHHhccCCcccccccHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 23488999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HhhcC-CHHHHHHHHHHHHhhccchHHHHHHHHHHHHH----hcCCCCCCCCccccHHHHHHHHHHHhcCCCchhccCCC
Q 045994 163 AMKMA-TVDKAFELLEKLQSASWDPAVQDMEDLKSFSK----SQGALEADKLDHWDIGFWSERLRESKYEINEEELRPYF 237 (574)
Q Consensus 163 ~~~m~-~pe~v~~fL~~l~~~~~p~~~~e~~~l~~~k~----~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~l~~yf 237 (574)
.++|+ |+++|.+||++|.++++|.+.+|...+.++++ ..|.+..+++..||..||++++...+|++|+++|++||
T Consensus 309 ~~kMa~ss~tv~~fl~dL~~kL~pl~~~e~~v~~elk~~e~k~~g~~~~~~~~~wD~~yy~~~~~e~~f~vd~~~LreyF 388 (718)
T KOG2089|consen 309 AMKMAKSSETVVEFLDDLSQKLRPLGIDERSVLLELKKGEAKDRGAPFDGKLTAWDLRYYMKRVEESKFDVDQEDLREYF 388 (718)
T ss_pred HHHhhcCcHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHhcCCCccccchhhHHHHHHHHHHHHhcCCCHHHHHhhC
Confidence 99999 99999999999999999999999888777764 34545677899999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcceeeeCCCCCCccccceeEEEEEcC-CCCceeEeeccCCCCCCCCCCCcccccccccccccc
Q 045994 238 SLPKVMDGLFNLAKTLFGIDIEPADGLAPVWNNDVRFYCVKDS-SGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLS 316 (574)
Q Consensus 238 ~~~~vl~gl~~~~~~lfgi~~~~~~~~~~~w~~dV~~~~v~~~-~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~ 316 (574)
|++.|++||+.|++.||||.|++.++ .++||+|||+|.|.|. +|.++|+||+|+|+|+||+.+.+.+.. .+.++.
T Consensus 389 Pl~~v~~Gl~~i~q~LFglkf~e~~d-a~vWh~dVr~y~v~D~~Sg~~vG~fY~D~y~RegK~gh~~~f~l---~~~~~~ 464 (718)
T KOG2089|consen 389 PLPVVLSGLFGIYQTLFGLKFEEATD-AEVWHADVRVYTVKDSASGNPVGYFYLDPYPREGKYGHAAVFGL---QPGCLQ 464 (718)
T ss_pred CcHHHHHHHHHHHHHHhCceeeecCC-chhcccceeEEeccCCCCCceeeEEEeccCCCccccchhhhhcc---chhhhc
Confidence 99999999999999999999999987 7999999999999997 699999999999999996554343322 233444
Q ss_pred CCCCccccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcC
Q 045994 317 RNGTTSRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYH 396 (574)
Q Consensus 317 ~~g~~~~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~ 396 (574)
.+|+ .+.|+.+++|||++|++++|+||.|+||+|+||||||+||++|+++.|..+||+++++|||||+||||||+|+|+
T Consensus 465 ~~ss-~~~PVaalv~nfS~p~~~kpsll~~~ev~t~FheFGh~~q~ll~Qa~~~~fsG~~~vewDave~psq~Lenwv~~ 543 (718)
T KOG2089|consen 465 KDSS-RRIPVAALVCNFSKPQSDKPSLLGHDEVETLFHEFGHVLQHLLTQADFARFSGPRNVEWDAVEVPSQFLENWVWD 543 (718)
T ss_pred cCCc-cccchHHHHHhcCCcccCCCCccchHHHHHHHHHHhHHHHHHHhcCccccccCcccCCcchhhchHHHHHHhccC
Confidence 5664 689999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCcHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHhcCCCCCCC
Q 045994 397 RDTLMSIAKHYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELHTNYVPGGSESVFDVDQRVSKTTQVLPPLP 476 (574)
Q Consensus 397 ~~vL~~~~~h~~t~~~lp~~~~~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 476 (574)
+++|..+++||+||++||++++++++.+++.+.|+.++|||++|.||+.+|...+. +..+.|++++++|.++|..+
T Consensus 544 ~d~L~~lS~Hy~tge~l~eEl~~kl~~~r~~~~gl~tlrqL~~a~~D~~lht~~d~----~~~~~~~~l~~~i~~~p~~~ 619 (718)
T KOG2089|consen 544 PDTLRSLSKHYKTGEPLPEELLKKLILTRTVNAGLFTLRQLVLADFDLELHTKTDA----DLADTYRQLCQEISIVPATP 619 (718)
T ss_pred chHhhhhcccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcccc----chHHHHHHhchhheecCCCC
Confidence 99999999999999999999999999999999999999999999999999997433 34688999999999999999
Q ss_pred CCCCCCcccccccCCcccchhhHHHHHHHHHHHHH-HHHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCC
Q 045994 477 EDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFS-AFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGRE 555 (574)
Q Consensus 477 ~~~~~~~f~Hl~~~~Y~a~YY~Yl~a~~~A~~i~~-~f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~ 555 (574)
++..+|+|+|||.+||+|+||+|+||+|+|+|||+ .|++.|.+|. .++|.+||++||++||+.+|+++|++|+||+
T Consensus 620 ~d~~pcsF~hifa~gy~A~yY~yLWsEv~aaDif~t~fe~~g~~N~---~~~G~ryR~tiLa~GG~~~~~e~f~~FlGRe 696 (718)
T KOG2089|consen 620 GDNMPCSFGHIFAGGYAAGYYSYLWSEVLAADIFSTFFEQEGEDNI---KEVGMRYRNTILAPGGGKDPMEVFKRFLGRE 696 (718)
T ss_pred CCCCCccccchhcCchHHHHHHHHHHHHHHHHHHHHHhhhcCCccH---HHHHHHHHHhhhcCCCCccHHHHHHHhhCCC
Confidence 99999999999988999999999999999999997 5666788773 4999999999999999999999999999999
Q ss_pred CCchHHHHhCCCCCccc
Q 045994 556 PSPEPLLRHNGLLSTAA 572 (574)
Q Consensus 556 p~~~~~~~~~g~~~~~~ 572 (574)
|+.+||++++||..+.+
T Consensus 697 PS~~Afl~s~gl~~~~~ 713 (718)
T KOG2089|consen 697 PSQEAFLKSLGLQEASA 713 (718)
T ss_pred CChhHHHHhhccccccc
Confidence 99999999999986543
No 5
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-112 Score=877.33 Aligned_cols=529 Identities=27% Similarity=0.455 Sum_probs=471.5
Q ss_pred HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCChhhhcCCCHHHHHHHHHHHHhcC
Q 045994 4 IGVCAAQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPATALGLAAQTALSKG 83 (574)
Q Consensus 4 ~~~l~~~~~~f~~~G~~L~~~~r~~~~~l~~~i~~l~~~f~~n~~~~~~~~~~~~~~~~eL~g~p~~~~~~~~~~~~~~g 83 (574)
+++.+.++.|||++||||++++|+++++|+.+|..||++|.+|...-... .+.....-|-+.....++.. .++
T Consensus 158 ~~v~~lll~DFE~sGIhL~~~kr~kfv~Ls~eI~~lg~~F~~n~~~~P~~--~l~~s~~~l~~~~~~~~~~k-----~kn 230 (704)
T KOG2090|consen 158 TYVARLLLDDFEKSGIHLDPEKREKFVQLSSEIFDLGREFQNNTDRFPDN--KLPNSLERLPFSKKNFIESK-----RKN 230 (704)
T ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHhHHHHHHHHHHHhccccCCcc--ccchhhhhccCcchhhHHHH-----hcC
Confidence 34788999999999999999999999999999999999999997732110 12112222333333333221 111
Q ss_pred CCCCCCCCCceEEeecCCcHHHHhhcCCCHHHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q 045994 84 HENATAENGPWIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSMA 163 (574)
Q Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~~~~~n~~~l~~ll~lR~~~A~llGy~s~a~~~l~ 163 (574)
+.+...+.....++.++.|+++||.+|..+...-. .+..+|++++..|+++|++.||+||||++++
T Consensus 231 ----------F~~~t~~~~i~~ll~~~~d~~vRk~vY~~~~~~~~----~q~~~L~~Li~sRheLa~l~G~~SfA~~al~ 296 (704)
T KOG2090|consen 231 ----------FDQATDPYIIYGLLSSSEDESVRKMVYNTFHSPSD----IQVKLLEHLISSRHELAKLVGKSSFAHRALE 296 (704)
T ss_pred ----------CCcCCCCeeeehhhhcCCCHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHHHHHhCcchHHHHHhh
Confidence 33334444556899999999999999999977533 6899999999999999999999999999999
Q ss_pred hhcC-CHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHhcCCCchhccCCCChhhH
Q 045994 164 MKMA-TVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDIGFWSERLRESKYEINEEELRPYFSLPKV 242 (574)
Q Consensus 164 ~~m~-~pe~v~~fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~~v 242 (574)
++|+ +|+.|..||+.|.++++|...+|+..|+.+|++.+..+..++.|||.+||..+++++.++++....++|||++.|
T Consensus 297 ~~~a~~pk~V~~Fl~~Ls~k~~~~~~kel~~i~~mk~k~~~~~~~e~~~WD~~YYT~~~r~~~~~~~~~~~~~fFslg~~ 376 (704)
T KOG2090|consen 297 GKLAKNPKTVRSFLEELSEKLSEKTDKELAVIRDMKKKENNNNNAEIEPWDRPYYTSMYRQSNNSLNPSIYSPFFSLGSC 376 (704)
T ss_pred ccccCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcCCCCCccccccchhhhhHhhcccCCCCcceeeccccHHHH
Confidence 9999 999999999999999999999999999999888655567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcceeeeCC-CCCCccccceeEEEEEcCCCCceeEeeccCCCCCCCCCCCccccccccccccccCCCCc
Q 045994 243 MDGLFNLAKTLFGIDIEPAD-GLAPVWNNDVRFYCVKDSSGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTT 321 (574)
Q Consensus 243 l~gl~~~~~~lfgi~~~~~~-~~~~~w~~dV~~~~v~~~~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~~~g~~ 321 (574)
++||..++++||||+|.+.+ .+||+|||||+++.|++++++.||+||||+|.|+||..+.|++|++|+|.. +||+
T Consensus 377 ieGLs~L~~~LyGirl~~~~l~pGE~WhpdV~KL~vv~E~eg~lG~IY~Dlf~R~gK~~g~aHFTIr~sr~l---~Dg~- 452 (704)
T KOG2090|consen 377 IEGLSTLFQRLYGIRLIPEPLAPGEVWHPDVRKLNVVHEQEGLLGYIYCDLFERPGKTVGDAHFTIRGSRQL---SDGT- 452 (704)
T ss_pred HHHHHHHHHHHhCeeeeccCCCCccccCchhhhheeecCCCCceeEEEEEeeccCCCCCCCceEEeeccccC---CCCC-
Confidence 99999999999999999965 679999999999999999999999999999999998888899999988753 6886
Q ss_pred cccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcCHHHHH
Q 045994 322 SRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYHRDTLM 401 (574)
Q Consensus 322 ~~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~~~vL~ 401 (574)
||+|+|+++|||+.++...|++|++.+|+|||||||||||+||++|+|||++|||| |.||||+||.+||.|++|+.||+
T Consensus 453 yQlPVi~L~cnf~rss~~s~t~L~~~~vetLFHEmGHAMHSmLGrT~YQhvtGTRc-~tDfaEiPSiLMEyFa~D~rVl~ 531 (704)
T KOG2090|consen 453 YQLPVIVLVCNFVRSSQSSPTFLSLSEVETLFHEMGHAMHSMLGRTHYQHVTGTRC-PTDFAEIPSILMEYFANDYRVLR 531 (704)
T ss_pred eeceeeEEeecccccccCCCcccCHHHHHHHHHHHHHHHHHHhccchhccccCccc-chhHhhhhHHHHHHHhcchHHHH
Confidence 69999999999999999999999999999999999999999999999999999997 79999999999999999999999
Q ss_pred HHHhhccCCCCCcHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHhcCCCCCCCCCCCC
Q 045994 402 SIAKHYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELHTNYVPGGSESVFDVDQRVSKTTQVLPPLPEDRFL 481 (574)
Q Consensus 402 ~~~~h~~t~~~lp~~~~~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 481 (574)
.|++||+|++++|++++.++.++++++++.++++|+++|++|+.+|....+.-..+..+.+.++.+++.++++.|++.|+
T Consensus 532 ~~aRhy~t~e~l~~~mv~~l~~s~n~~Aa~e~q~Qv~ya~~Dq~fhg~~~~~~~~~~~~~~~~v~~k~~~~~~~~~taw~ 611 (704)
T KOG2090|consen 532 FFARHYSTGEPLPEDMVNRLCESRNSFAAQETQRQVFYALLDQEFHGIACPLIAEDTTDLLSEVKRKFSGLLYVPPTAWQ 611 (704)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhcCCCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999633433457889999999999998888999999
Q ss_pred CcccccccCCcccchhhHHHHHHHHHHHHH-HHHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCCchH
Q 045994 482 CSFSHIFAGGYAAGYYSYKWAEVLSADAFS-AFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEP 560 (574)
Q Consensus 482 ~~f~Hl~~~~Y~a~YY~Yl~a~~~A~~i~~-~f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~~~~ 560 (574)
.+|+|++ +|||+||||++++++|..||+ .|.++|++ |++|++||++||++||+++|++|++++||++|..+.
T Consensus 612 ~rFsHl~--gYGA~YYSYL~~r~~AS~IWq~~Fe~dPfs-----R~aGek~r~eil~hGG~~~P~~lva~~L~~~~~~~g 684 (704)
T KOG2090|consen 612 LRFSHLV--GYGATYYSYLFARAIASLIWQQLFENDPFS-----RKAGEKFRKEILKHGGGRDPAELVADILGKPPLENG 684 (704)
T ss_pred cchhhhh--ccCchHHHHHHHHHHHHHHHHHHHhcCccc-----hhhhHHHHHHHHHhcCCCChHHHHHHHhcCCCCccc
Confidence 9999999 799999999999999999997 57777763 899999999999999999999999999999999877
Q ss_pred HHHhC
Q 045994 561 LLRHN 565 (574)
Q Consensus 561 ~~~~~ 565 (574)
+...+
T Consensus 685 ~~~Al 689 (704)
T KOG2090|consen 685 GVDAL 689 (704)
T ss_pred hHHHH
Confidence 76543
No 6
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=100.00 E-value=2.4e-101 Score=830.91 Aligned_cols=444 Identities=32% Similarity=0.531 Sum_probs=398.2
Q ss_pred HHhhcCCCHHHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHHHHHHHcCCCchHHHHHHhhcC-CHHHHHHHHHHHHhhc
Q 045994 105 SVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMKMA-TVDKAFELLEKLQSAS 183 (574)
Q Consensus 105 ~vl~~~~d~~~Rk~~~~a~~~~~~~~~~~n~~~l~~ll~lR~~~A~llGy~s~a~~~l~~~m~-~pe~v~~fL~~l~~~~ 183 (574)
+||++|+|+++||++|+|+.++.. +|.++|++|+++|+++|+++||+||+++++.++|+ ||++|.+||++|.+++
T Consensus 1 ~~l~~~~d~~~Rk~a~~a~~~~~~----~n~~il~~l~~lR~e~A~llGy~sya~~~l~~~ma~spe~v~~fL~~l~~~~ 76 (458)
T cd06457 1 GLLASVPNESVRELVYRAFHSSSA----EQLELLEELLSSRAELAQLLGFESYAHRALRGKMAKNPENVMEFLTELSEKL 76 (458)
T ss_pred CccccCCCHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 378999999999999999998754 69999999999999999999999999999999999 9999999999999999
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHhcCCCchhccCCCChhhHHHHHHHHHHHHhcceeeeCCC
Q 045994 184 WDPAVQDMEDLKSFSKSQGALEADKLDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADG 263 (574)
Q Consensus 184 ~p~~~~e~~~l~~~k~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~gl~~~~~~lfgi~~~~~~~ 263 (574)
+|.+++|++.|++++++......++|.|||+.||.++++++++++|++++++|||++.|++||+.++++||||+|++++.
T Consensus 77 ~p~~~~e~~~L~~~~~~~~~~~~~~L~pwD~~yy~~~~~~~~~~~d~~~l~~YFpl~~vl~gl~~~~~~lfgi~~~~~~~ 156 (458)
T cd06457 77 RPRAEEELAVLRDMKRKVLGKPLSSLAPWDRDYYTGQYRQSRFDSEPSNLSPYFSLGTVMEGLSRLFSRLYGIRLVPVPL 156 (458)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHHhhcCCChHHhcccCcHHHHHHHHHHHHHHHhCeEEEecCC
Confidence 99999999999988876431124589999999999999999999999999999999999999999999999999999763
Q ss_pred -CCCccccceeEEEEEcCCCCceeEeeccCCCCCCCCCCCccccc-cccccccc-------cCCCCccccCeEEEEccCC
Q 045994 264 -LAPVWNNDVRFYCVKDSSGSPIAYFYFDPYSRPSEKKGGAWMDE-VVSRSRVL-------SRNGTTSRLPVAHMVCNQT 334 (574)
Q Consensus 264 -~~~~w~~dV~~~~v~~~~~~~lG~iylDl~~R~gKk~~ga~~~~-~~~~~~~~-------~~~g~~~~~P~~~l~~nf~ 334 (574)
++++|||||++|+|+|++|++||+||+|+|+|+| |++|||+.. ++++.... ..+| .+|.|+++++|||+
T Consensus 157 ~~~~~Wh~dV~~~~v~d~~~~~lG~~YlDl~~R~~-K~~~a~~~~~~~~~~~~~~~~~~~~~~~g-~~q~Pv~~lvcnf~ 234 (458)
T cd06457 157 APGEVWHPDVRKLDVVHEDEGLLGVIYCDLFSRPG-KPPGAAHFTIRCSRRLDDDDVAERGGRGG-TYQLPVVALMCNFP 234 (458)
T ss_pred CCCCCcCccceEEEEEeCCCCEEEEEEeecCCCCC-CCCCcceeccccccccCcccccccccCCC-ceeCCeEEEECCCC
Confidence 4799999999999999888899999999999999 566666654 44332110 0115 36899999999999
Q ss_pred CCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcCHHHHHHHHhhccCCCCCc
Q 045994 335 PPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYHRDTLMSIAKHYQTGESLP 414 (574)
Q Consensus 335 ~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~~~vL~~~~~h~~t~~~lp 414 (574)
+|++++|+||+|+||.|||||||||||++|++++|++++||+ +++||||+|||+||+|||||++|+.+++|++|++++|
T Consensus 235 ~p~~~~p~lL~~~~v~TLfHEfGHalH~~ls~~~~~~~sgt~-~~~d~vE~pS~~~E~~~~~~~~L~~~a~h~~t~e~ip 313 (458)
T cd06457 235 PPSPSGPTLLSPHEVETLFHEMGHAMHSMLGRTEYQHVSGTR-CATDFVEVPSILMEYFASDPRVLKLFARHYSTGEPLP 313 (458)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhHHHHHHHcCCCccccCCCC-CCcchhhcCHHHHHHHHhhHHHHHHHhcccCCCCcCc
Confidence 999999999999999999999999999999999999999986 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhcHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHhcCCCCCCCC-CCCCCcccccccCCcc
Q 045994 415 EDVYLKLLAARTFRAGSFSLRQLRFASVDLELHTNYVPGGSESVFDVDQRVSKTTQVLPPLPE-DRFLCSFSHIFAGGYA 493 (574)
Q Consensus 415 ~~~~~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~f~Hl~~~~Y~ 493 (574)
++++++++++++++.++.+++|+.+|+||+.+|.... .+..++.+++.++.+++.+++..++ ..|+++|+||| +|+
T Consensus 314 ~~l~~~l~~~~~~~~~~~~~rq~~~a~fD~~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Hl~--gy~ 390 (458)
T cd06457 314 EEMLARLLASKNSFAALETQQQIVYALLDQELHGEQP-LSPTFTSDVLRDSTEIFYGLPYVPGGTAWQLRFGHLV--GYG 390 (458)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCCCc-ccccCHHHHHHHHHHHhcCCCCCCCCCCCcccccccc--Ccc
Confidence 9999999999999999999999999999999998643 2233567999999999988776666 67778999999 799
Q ss_pred cchhhHHHHHHHHHHHHHH-HHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCCchHHHH
Q 045994 494 AGYYSYKWAEVLSADAFSA-FEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLLR 563 (574)
Q Consensus 494 a~YY~Yl~a~~~A~~i~~~-f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~~~~~~~ 563 (574)
|+||+|+||+++|+++|+. |++++ +| +++|++||+.||++|||++|++++++||||+|+++....
T Consensus 391 a~YYsYl~a~vla~di~~~~f~~~~-~n----~~~g~~y~~~iL~~Ggs~~p~e~l~~flGrdp~~~~~~~ 456 (458)
T cd06457 391 ATYYSYLFDRAIASKIWQKLFAADP-LS----REAGERLREELLKHGGGKDPWELLAGVLGKPPLVKGGAG 456 (458)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCC-CC----HHHHHHHHHHHccCCCCcCHHHHHHHHcCCCCCCCcccc
Confidence 9999999999999999965 65544 33 799999999999999999999999999999999987653
No 7
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=100.00 E-value=9.1e-99 Score=799.85 Aligned_cols=421 Identities=53% Similarity=0.921 Sum_probs=389.1
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCchHHHHHHhhcC-CHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCCcc
Q 045994 133 DNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMKMA-TVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDH 211 (574)
Q Consensus 133 ~n~~~l~~ll~lR~~~A~llGy~s~a~~~l~~~m~-~pe~v~~fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l~p 211 (574)
+|..+|++|+++|+++|+++||+||++|++.++|+ ||++|.+||++|.+.++|.+.+|++.|+++|++.+ +...|.|
T Consensus 1 ~N~~~l~~l~~lR~e~A~llG~~s~a~~~l~~~ma~sp~~v~~Fl~~l~~~~~p~~~~e~~~L~~~~~~~~--~~~~l~~ 78 (422)
T cd06456 1 DNRPLIEEILALRAEKAKLLGFENYAEYSLADKMAKSPEAVLEFLEDLAPKAKPQAKKELAELQAFAKEEG--GEDELEP 78 (422)
T ss_pred ChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCH
Confidence 48999999999999999999999999999999999 99999999999999999999999999999988764 3457999
Q ss_pred ccHHHHHHHHHHHhcCCCchhccCCCChhhHHHHHHHHHHHHhcceeeeCCCCCCccccceeEEEEEcCCCCceeEeecc
Q 045994 212 WDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFD 291 (574)
Q Consensus 212 WD~~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~gl~~~~~~lfgi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylD 291 (574)
||+.||.++.++..+++|++++++|||++.|++||+.++++|||++|+|+++ .++|||||++|+|+|+++++||+||+|
T Consensus 79 wD~~yy~~~~~~~~~~~d~~~l~~YFpl~~v~~gl~~~~~~lfgi~~~~~~~-~~~Wh~dV~~~~v~d~~~~~lG~~ylD 157 (422)
T cd06456 79 WDWAYYSEKLRKEKYDLDEEELRPYFPLEKVLDGLFELAERLYGITFKERTD-LPVWHPDVRVYEVFDKDGSHIGLFYLD 157 (422)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHhccCCHHHHHHHHHHHHHHHcCeeEEECCC-CCCCCCCceEEEEEeCCCCeEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999875 499999999999999888899999999
Q ss_pred CCCCCCCCCCCccccccccccccccCCCCccccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCcccc
Q 045994 292 PYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESL 371 (574)
Q Consensus 292 l~~R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~ 371 (574)
+++|+| |++||||+.+.++.. +| .++.|+++++|||++|.++.|+||++++|.|||||||||||++|++++|+.
T Consensus 158 l~~R~~-K~~ga~~~~~~~~~~----~~-~~~~P~~~l~~nf~~~~~~~p~lL~~~~v~tLfHEfGHalH~~ls~~~~~~ 231 (422)
T cd06456 158 LYAREG-KRGGAWMNNLRSQSK----NG-LGQKPVAYLVCNFTKPAGGKPALLTHDEVTTLFHEFGHALHHLLTDVEYPS 231 (422)
T ss_pred ccCCCC-CCCCceeeccccccc----CC-CCCCCEEEEECCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999999 678888887654221 34 358999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccccccchhhHHHhhcCHHHHHHHHhhccCCCCCcHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHhhccCC
Q 045994 372 VAGIRGIEWDAVELPSQFMENWCYHRDTLMSIAKHYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELHTNYV 451 (574)
Q Consensus 372 ~sgt~~~~~df~E~pS~l~E~~~~~~~vL~~~~~h~~t~~~lp~~~~~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~ 451 (574)
++|++ +++||||+||++||+|+|||+||+.+++|++||++||++++++++++++++.++.+++|+.+|+||+.+|+..+
T Consensus 232 l~~~~-~~~d~~E~pS~~~E~~~~d~~vL~~~s~h~~t~~~lp~~l~~~~~~~~~~~~~~~~~~ql~~a~fD~~lh~~~~ 310 (422)
T cd06456 232 LGGTN-VEWDFVELPSQFMENWAWEPEVLKLFAKHYETGEPLPDELIDKLLAARNFNSGFATVRQLEFALLDLALHSLTD 310 (422)
T ss_pred cCCCc-CchhHhhccHHHHHHHhcCHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 98875 68999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCcccchhhHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 045994 452 PGGSESVFDVDQRVSKTTQVLPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLNDSKAVQDTGRRF 531 (574)
Q Consensus 452 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~Hl~~~~Y~a~YY~Yl~a~~~A~~i~~~f~~~~~~~~~~~~~~g~~y 531 (574)
......+.+++.++.+.+.+.+..++++|+++|+|||+++|+|+||||+||+++|+|||+.|++++..+ +++|++|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Hi~~~gY~A~YYsYlws~vla~di~~~f~~~~~~~----~~~G~~~ 386 (422)
T cd06456 311 PEILDVVQFELDALRKEGLVIPPPPPRYFSNYFSHIFSGGYAAGYYSYKWAEVLDADAFSAFEEEGIFN----RETGRRF 386 (422)
T ss_pred ccccchHHHHHHHHHHhcCCCCCCCCCCCCCccCcCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHH
Confidence 322356788888898888777767788888999999977899999999999999999999998877654 7999999
Q ss_pred HHHHHcCCCCCCHHHHHHHhhCCCCCchHHHHhCCC
Q 045994 532 RETILAFGGGKPPLEVFVEFRGREPSPEPLLRHNGL 567 (574)
Q Consensus 532 r~~~L~~Ggs~~p~ell~~flGr~p~~~~~~~~~g~ 567 (574)
|++||++||+++|.+++++|+||+|++++|++++||
T Consensus 387 r~~iL~~Ggs~~~~e~~~~F~Gr~p~~~a~l~~~gl 422 (422)
T cd06456 387 RDTILSKGGSRDPMELFRAFRGRDPSIEALLRRRGL 422 (422)
T ss_pred HHHHhhcCCCcCHHHHHHHhcCCCCChHHHHHHcCC
Confidence 999999999999999999999999999999999996
No 8
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=100.00 E-value=7.2e-97 Score=800.41 Aligned_cols=468 Identities=37% Similarity=0.690 Sum_probs=425.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccCChhhhcCCCHHHHHHHHHHHHhcCCCCCCCCCCceEEeecCCcHHHHhhcC
Q 045994 31 KIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPATALGLAAQTALSKGHENATAENGPWIITLDAPSFMSVMQHA 110 (574)
Q Consensus 31 ~l~~~i~~l~~~f~~n~~~~~~~~~~~~~~~~eL~g~p~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~vl~~~ 110 (574)
+++++|..|+++|++|+.+ +.+++.++|+++
T Consensus 1 ~~~~~~~~~~~~f~~~~~~-------------------------------------------------~~~~~~~~l~~~ 31 (472)
T cd06455 1 ALKKELSELCQEFSKNLNE-------------------------------------------------KYPDYFPVMKYA 31 (472)
T ss_pred ChhHHHHHHHHHHHHhhhh-------------------------------------------------cCccHHHHHhcC
Confidence 3788999999999999775 134688999999
Q ss_pred CCHHHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHHHHHHHcCCCchHHHHHHhhcC-CHHHHHHHHHHHHhhccchHHH
Q 045994 111 KNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMKMA-TVDKAFELLEKLQSASWDPAVQ 189 (574)
Q Consensus 111 ~d~~~Rk~~~~a~~~~~~~~~~~n~~~l~~ll~lR~~~A~llGy~s~a~~~l~~~m~-~pe~v~~fL~~l~~~~~p~~~~ 189 (574)
+|+++||+||+++.+++. .+|.++|.+|+++|+++|+++||+||+++++.++|+ ||++|.+||+.+.+.++|.+++
T Consensus 32 ~d~~~Rk~~~~a~~~~~~---~~n~~~l~~ll~~R~~~A~l~Gy~s~a~~~l~~~m~~s~e~v~~fl~~l~~~~~p~~~~ 108 (472)
T cd06455 32 KNAETRKAMWVAFQNRGG---PENVPLLEELVALRHELARLLGYKSHADYVLEDRMAKSPETVRDFLEDLSKKLKPLAEK 108 (472)
T ss_pred CCHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999844 379999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCC--CCccccHHHHHHHHHHHhcCCCchhccCCCChhhHHHHHHHHHHHHhcceeeeCCCCCCc
Q 045994 190 DMEDLKSFSKSQGALEAD--KLDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADGLAPV 267 (574)
Q Consensus 190 e~~~l~~~k~~~~~~~~~--~l~pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~gl~~~~~~lfgi~~~~~~~~~~~ 267 (574)
|++.|.++|++.. +.+ ++.|||+.||++++++++++++++++++|||++.|++|++.+++++||++++++.. .++
T Consensus 109 e~~~l~~~k~~~~--~~~~~~l~~wD~~y~~~~~~~~~~~~~~~~~~~yf~~~~~~~~i~~~~~~lfg~~~~~~~~-~~~ 185 (472)
T cd06455 109 ELAELLELKKKEV--PEAGDRIYPWDLAYYMERVEEEKYDVDQEKIREYFPLEVVIEGMLDIYQRLFGLRFEEVPD-ASV 185 (472)
T ss_pred HHHHHHHHHHHhc--CCCCCCCCHhhHHHHHHHHHHHhcCCCHHHHhccCcHHHHHHHHHHHHHHHhCeEEEeCCC-CCC
Confidence 9999999987642 333 69999999999999998999999999999999999999999999999999999864 389
Q ss_pred cccceeEEEEEcCC-CCceeEeeccCCCCCCCCCCCccccccccccccccCCCCccccCeEEEEccCCCCCCCCCCCCCh
Q 045994 268 WNNDVRFYCVKDSS-GSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVAHMVCNQTPPVGDKPSLMTF 346 (574)
Q Consensus 268 w~~dV~~~~v~~~~-~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P~~~l~~nf~~~~~~~p~ll~~ 346 (574)
|||||++|+|+|++ |+++|++|||+++|+| |++||||..+.+ .....+|+ +|.|+++++|||++|.+++|+||++
T Consensus 186 w~~dv~~~~v~d~~~~~~~g~~ylD~~~R~g-K~~Ga~~~~~~~--~~~~~~g~-~~~P~~~i~~Nf~~~~~~~p~ll~~ 261 (472)
T cd06455 186 WHEDVRLYSVWDADTGEFLGYFYLDLHPREG-KYGHAANFGLQP--GFLLPDGS-RQYPVAALVCNFPKPTADKPSLLRH 261 (472)
T ss_pred CCCcceEEEEEECCCCCEEEEEEeecCCCCC-CCCCcccccccc--ceecCCCC-EeCCEEEEECcCCCCCCCCCCCCCH
Confidence 99999999999974 7899999999999999 678888866543 22224564 6789999999999999999999999
Q ss_pred hhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcCHHHHHHHHhhccCCCCCcHHHHHHHHHHhc
Q 045994 347 REVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYHRDTLMSIAKHYQTGESLPEDVYLKLLAART 426 (574)
Q Consensus 347 ~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~~~vL~~~~~h~~t~~~lp~~~~~~l~~~~~ 426 (574)
++|.|||||||||||++|+++++++++|++ +++||||+||++||+|+|||++|..+++|++|+++||++++++++++++
T Consensus 262 ~~V~TLfHEfGHalH~~ls~~~~~~~sg~~-~~~d~aE~pS~~~E~~~~~~~~l~~l~~h~~t~e~i~~~li~~~~~~~~ 340 (472)
T cd06455 262 DEVETFFHEFGHVIHHLLGRTKYARFSGTR-VERDFVEAPSQMLENWCWEPEVLKRLSKHYKTGEKIPDELIERLIASRH 340 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCCCc-CChhhhhcchHHHHHHhcCHHHHHHHhhccCCCCCCCHHHHHHHHHhhh
Confidence 999999999999999999999999999986 6899999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCcccchhhHHHHHHHH
Q 045994 427 FRAGSFSLRQLRFASVDLELHTNYVPGGSESVFDVDQRVSKTTQVLPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLS 506 (574)
Q Consensus 427 ~~~~~~~~~ql~~a~~D~~~H~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~Hl~~~~Y~a~YY~Yl~a~~~A 506 (574)
++.++.+++|+.+|+||+.+|...+. ..++.++|.++.+++.+.+..++..|+++|+||| ++|+|+||+|+||+++|
T Consensus 341 ~~~~~~~~~q~~~a~fd~~~h~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~H~~-~~Y~a~yY~Y~~a~~la 417 (472)
T cd06455 341 FNRGLFYLRQLFFALFDLALHTGDPA--DLDTTKLYNDLREEISLIPSTEGTHGPASFGHLA-GGYDAGYYGYLWSEVFA 417 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHhCCCCCCCCCCccccccccc-cCcccchHHHHHHHHHH
Confidence 99999999999999999999986432 2679999999999999877666677789999999 46889999999999999
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCCchHHHHhC
Q 045994 507 ADAFSAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLLRHN 565 (574)
Q Consensus 507 ~~i~~~f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~~~~~~~~~ 565 (574)
+++|++|.+++.++ +++|++|+++||++|||++|+++|++||||+|+.++|++++
T Consensus 418 ~~~~~~~~~~~~~~----~~~g~~y~~~~L~~Ggs~~p~ell~~flGr~~~~~a~~~~~ 472 (472)
T cd06455 418 ADMFSSFFKDGLLN----PEVGLRYRDTVLAPGGSKDAADMLKDFLGREPNNDAFLKSL 472 (472)
T ss_pred HHHHHHHHhcCCCC----HHHHHHHHHHHhcCcCCcCHHHHHHHHhCCCCChhHHhhcC
Confidence 99999887777554 79999999889999999999999999999999999999975
No 9
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=100.00 E-value=2.5e-90 Score=750.75 Aligned_cols=449 Identities=43% Similarity=0.738 Sum_probs=392.7
Q ss_pred HhhcCCCHHHHHHHHHHHhcccCCCC--CCcHHHHHHHHHHHHHHHHHcCCCchHHHHHHhhcC-CHHHHHHHHHHHHhh
Q 045994 106 VMQHAKNRVLREEVYRAYVSRASSGD--LDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMKMA-TVDKAFELLEKLQSA 182 (574)
Q Consensus 106 vl~~~~d~~~Rk~~~~a~~~~~~~~~--~~n~~~l~~ll~lR~~~A~llGy~s~a~~~l~~~m~-~pe~v~~fL~~l~~~ 182 (574)
||++|+|+++||++|+++.+++.+.. .+|..+|++++++|+++|+++||+||+++++.++|+ +|++|.+||.++.++
T Consensus 1 ~l~~~~d~~~Rk~~~~a~~~~~~~~~~~~~n~~~l~~l~~~R~~~A~llGy~s~~~~~l~~~m~~~~~~v~~fL~~~~~~ 80 (458)
T PF01432_consen 1 VLKYSPDRELRKKAYRAYYSRYSDNQPTLDNAAILNELLKLRNELAKLLGYPSYAEYSLQDKMAKNPENVLDFLDELVKK 80 (458)
T ss_dssp HHHC-S-HHHHHHHHHHHHTTTHHTHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTTTSHHHHHHHHHHHHHH
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHhhhcCChHHHHHHHHHHHHH
Confidence 68999999999999999998865321 258999999999999999999999999999999999 999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCC-CCccccHHHHHHHHHHHhcCCCchhccCCCChhhHHHHHHHHHHHHhcceeeeC
Q 045994 183 SWDPAVQDMEDLKSFSKSQGALEAD-KLDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPA 261 (574)
Q Consensus 183 ~~p~~~~e~~~l~~~k~~~~~~~~~-~l~pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~gl~~~~~~lfgi~~~~~ 261 (574)
++|.+.++++.+++++++. .+.+ +|+|||++||++++++..+.+++.++++|||++.|++||+.+++++|||+|+++
T Consensus 81 ~~p~~~~~~~~l~~~~~~~--~g~~~~l~~wD~~y~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~~l~~~lfgi~~~~~ 158 (458)
T PF01432_consen 81 LKPLLERELELLKKLKKKR--LGLEKKLRPWDVAYYMEQYRQERYDLDEEELSPYFPLEEVLEGLFELAERLFGIRFEEV 158 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TT-SSSBBGGGHHHHHHHHHHHHTSSSHHHHGGG-BHHHHHHHHHHHHHHHHTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCccccccchhHHHhhHHHHHHhccchhhcCCcCcHHHHHHHHHHHHHHHhcEEEEec
Confidence 9999999999999987765 2455 999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-CCccccceeEEEEEcC--CCCceeEeeccCCCCCCCCCCCccccccccccccccCCCCccccCeEEEEccCCCCCC
Q 045994 262 DGL-APVWNNDVRFYCVKDS--SGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVAHMVCNQTPPVG 338 (574)
Q Consensus 262 ~~~-~~~w~~dV~~~~v~~~--~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P~~~l~~nf~~~~~ 338 (574)
+.. +++|||||++|+|+|. ++.++|++|+|+++|+| |++||||+..+.. + ++|+ +|.|+++++|||++|.+
T Consensus 159 ~~~~~~~w~~dv~~~~v~d~~~~~~~ig~~ylDl~~R~g-K~~ga~~~~~~~~--~--~~~~-~~~~~~~i~~n~~~~~~ 232 (458)
T PF01432_consen 159 PDADGEVWHPDVRKFEVWDEIFSGMFIGYIYLDLYPRPG-KRSGAFCFTLRPS--R--SDGE-RQLPVPYIFCNFTGPSA 232 (458)
T ss_dssp TCGGHHHSSTT-EEEEEEETHTTHCECEEEEEEES--TT-S-SS-EEEEEEC---B--TTST-CECEEEEEEEEE-S-BT
T ss_pred ccccccceecceeEEEEeehhhcccchhcccccchhcCC-CCCCceeCCccCc--c--cccc-CCCCceEEEecCCCCCC
Confidence 754 7999999999999997 78899999999999999 6777787765432 1 4664 79999999999999999
Q ss_pred CCCCCCChhhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcCHHHHHHHHhhccCCCCCcHHHH
Q 045994 339 DKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYHRDTLMSIAKHYQTGESLPEDVY 418 (574)
Q Consensus 339 ~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~~~vL~~~~~h~~t~~~lp~~~~ 418 (574)
++|+||++++|.|||||||||||++|+++++++++|+ .+|+||||+||++||+|+||++++..+++|++++++||++++
T Consensus 233 ~~~~ll~~~~v~tLfHE~GHa~H~~ls~~~~~~~sg~-~~~~d~aE~~S~~~E~~~~~~~~l~~~~~~~~~~~~i~~~~l 311 (458)
T PF01432_consen 233 GKPSLLSHDDVETLFHEFGHAMHSLLSRTKYQHLSGT-RVPMDFAEFPSQFMENWLWDPLVLKAFSRHYETGEPIPEELL 311 (458)
T ss_dssp TC--B-SHHHHHHHHHHHHHHHHHHHCCCSSGGGSTT-SS-CHHCHHHHHHHHHHGGCHHHHHHH-BSTTTHHHHHHHHH
T ss_pred CCCCccChhhHHHHHHHHhHHHHHHHhccccccccCC-chhHHHHhcchHHHHHhhhchhhhhhhccChhhhhhHHHHHH
Confidence 9999999999999999999999999999999999998 478999999999999999999999999999999999999999
Q ss_pred HHHHHHhchhcHHHHHHHHHHHHHHHHhhccCCCCC--CCCHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCcccch
Q 045994 419 LKLLAARTFRAGSFSLRQLRFASVDLELHTNYVPGG--SESVFDVDQRVSKTTQVLPPLPEDRFLCSFSHIFAGGYAAGY 496 (574)
Q Consensus 419 ~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~Hl~~~~Y~a~Y 496 (574)
+.+.++++.+.+..+.+|+.++.||+.+|...+... ..++.++|.++.++|.+.+..++..++++|+|++.++|+++|
T Consensus 312 ~~~~~~~~~~~~~~~~~ql~~a~fd~~~h~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~hl~~~~Y~a~y 391 (458)
T PF01432_consen 312 EDLIASRNFFAAIFLFRQLLFALFDQELHESPEDGEPESEDLNELYRELQKEYYGDPSDPDDYFPASFSHLFSHFYAAGY 391 (458)
T ss_dssp HHHHHTTTTTHHHHHHHHHHHHHHHHHHCCHCCCTHHHHHHHHHHHHHHHHHCCTTTCBTTCCGGGGGGGGHCCCGTTTT
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHhccccCCccchhHHHHHHHHHHHhcCcchhccccccceehhhccCccCCCC
Confidence 999999999999999999999999999999743322 135789999999999998877788888999999756799999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCCchHHHHhCCC
Q 045994 497 YSYKWAEVLSADAFSAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLLRHNGL 567 (574)
Q Consensus 497 Y~Yl~a~~~A~~i~~~f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~~~~~~~~~g~ 567 (574)
|+|+||+++|.++|+.|.+++..+ +++|.+|++++|++|||++|.+++++|+||+|+++++++.+||
T Consensus 392 Y~Y~ya~~~a~~~~~~~~~~~~~n----~~~g~~~~~~~L~~Ggs~~~~e~l~~~~g~~~~~~~~~~~~~~ 458 (458)
T PF01432_consen 392 YSYLYAEVLAADLFSQFFEEDPLN----RETGRRFYKEFLSPGGSKDPLELLKKFLGREPSPDAFLKALGL 458 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHCHTTC----HHHHHHHHHHHCTTTTSS-HHHHHHHCCSSTTSSHHHHHHHT-
T ss_pred chhHHHHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHhcCCCCCCHHHHHHHhCCCCCChHHHHHHcCC
Confidence 999999999999999988865444 7999999999999999999999999999999999999999986
No 10
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=100.00 E-value=8.7e-64 Score=527.89 Aligned_cols=360 Identities=24% Similarity=0.382 Sum_probs=318.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHhhcC-CHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCCccccH
Q 045994 136 PIIDRILKLRLEKAKLLGYKNYAEVSMAMKMA-TVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDI 214 (574)
Q Consensus 136 ~~l~~ll~lR~~~A~llGy~s~a~~~l~~~m~-~pe~v~~fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l~pWD~ 214 (574)
++|++|+++|+++|+++||+||+++.+..+|+ ||++|.+|+++|.+.++|.+.++++.+++++++.. +...+.||
T Consensus 2 ~~l~~lv~lr~e~A~~lGy~~~~d~~l~~~~~~~~e~v~~f~~~l~~~~~p~~~~~~~~l~~~~~~~~--~~~~~~~~-- 77 (365)
T cd06258 2 ALLEELVSLRNQLARLLGYENFADYKLALQEAKSPETVEGFFEELKRKLRPLLAKLREEISAAKQKEE--EIYGELPA-- 77 (365)
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCcccccc--
Confidence 57899999999999999999999999999999 99999999999999999999999999988765432 34457888
Q ss_pred HHHHHHHHHHhcCCCchhccCCCChhhHHHHHHHHHHHHhcceeeeCCCCCCccccceeEEEEEcCCCCceeEeeccCCC
Q 045994 215 GFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDPYS 294 (574)
Q Consensus 215 ~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~gl~~~~~~lfgi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylDl~~ 294 (574)
.++++++.+++|||++.|++|++.++ |+|+++
T Consensus 78 ----------~~~~~~~~~~~~f~~~~~~~~~~~~~--------------------------------------~lD~~~ 109 (365)
T cd06258 78 ----------RYDVDSALLKEFFDAERPWEGALPFF--------------------------------------YLDLYD 109 (365)
T ss_pred ----------cccCCHhhccCcCChHHHHHHHHHhH--------------------------------------hccCCC
Confidence 46788999999999999999987554 999999
Q ss_pred CCCCCCCCccccccccccccccCCCCccccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccccccC
Q 045994 295 RPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAG 374 (574)
Q Consensus 295 R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sg 374 (574)
|+| |++|+||+..... . .++.|.++|+|||.+|.+++|+||++++|.|||||||||+|++++++.++.++|
T Consensus 110 R~g-K~~~a~~~~~~~~-------~-~~~~~~~~i~~n~~~~~~~~~~ll~~~~v~tl~HE~GHa~h~~l~~~~~~~~~g 180 (365)
T cd06258 110 RKG-KYPHGFCTGLDPG-------F-NRQDKDVRILANFTSPAAPDPVLLGHDDINTLFHEFGHAVHFLLIQQRYPFQER 180 (365)
T ss_pred CCC-CCCCCeeccccCC-------C-CCCCCeEEEEccCCCCCCCCCCcCCHHHHHHHHHHHhHHHHHHHhcCCCCcCCC
Confidence 999 6777788764321 1 246899999999999999999999999999999999999999999999988888
Q ss_pred cccccccccccchhhHHHhhcCHHHHHHHHhhccCCCCCcHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHhhccCCCCC
Q 045994 375 IRGIEWDAVELPSQFMENWCYHRDTLMSIAKHYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELHTNYVPGG 454 (574)
Q Consensus 375 t~~~~~df~E~pS~l~E~~~~~~~vL~~~~~h~~t~~~lp~~~~~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~~~~ 454 (574)
++ +++||+|+||++||+|++++++|+.+++|++++ ++|.+++++++..+....+..+.+|+.++.||+.+|... ..
T Consensus 181 ~~-~~~~~~E~~S~~~E~~~~~~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~--~~ 256 (365)
T cd06258 181 TP-TSTDFAEAQSMFLESFATDPEWLERYARHYQGG-VVPDELIEKLIAARLPNTLYETRRILVVAKFEKALYENP--DR 256 (365)
T ss_pred CC-CCccHHhccHHHHHHHHCCHHHHHHHhhhcCCC-CCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCCC--Cc
Confidence 75 789999999999999999999999999999998 999999999998888888888999999999999999863 22
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCchhhHHHHHHH
Q 045994 455 SESVFDVDQRVSKTTQVLPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAG---LNDSKAVQDTGRRF 531 (574)
Q Consensus 455 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~Hl~~~~Y~a~YY~Yl~a~~~A~~i~~~f~~~~---~~~~~~~~~~g~~y 531 (574)
..++.++|+++.++|.++++.+++.++++|+|++. ||++.||+|+||+++|++||+.|.++. .++ +++|++|
T Consensus 257 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~H~~~-gy~~yyy~Y~~~~v~a~qi~~~~~~~~~~~~~~----~~~g~~l 331 (365)
T cd06258 257 ELELQKLWRDLVKEILGVRPDPSTPDPAAFPHLAG-GSPAYYYGYLLAEMLASQLRATFKKKVGYLTDN----PEAGPRL 331 (365)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCCCCccchhcc-CcccchHHHHHHHHHHHHHHHHHHhcCCCCCCC----HHHHHHH
Confidence 34789999999999988876666677789999995 488889999999999999999987753 222 7899999
Q ss_pred HHHHHcCCCCCCHHHHHHHhhCCCCCchHHHHhC
Q 045994 532 RETILAFGGGKPPLEVFVEFRGREPSPEPLLRHN 565 (574)
Q Consensus 532 r~~~L~~Ggs~~p~ell~~flGr~p~~~~~~~~~ 565 (574)
|++||++||+++|.|++++|+|++|++++|++.+
T Consensus 332 ~~~il~~G~s~~~~el~~~~~G~~~~~~a~~~~~ 365 (365)
T cd06258 332 REHILRPGNSEPWKELLKRATGEDPNADAFLDHF 365 (365)
T ss_pred HHHHccCcCCcCHHHHHHHHcCCCCChHHHHhcC
Confidence 9889999999999999999999999999999863
No 11
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=100.00 E-value=1.9e-53 Score=475.30 Aligned_cols=439 Identities=16% Similarity=0.183 Sum_probs=322.7
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCChhhhcCCCHHHHHHHHHHHHhcCCC
Q 045994 6 VCAAQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPATALGLAAQTALSKGHE 85 (574)
Q Consensus 6 ~l~~~~~~f~~~G~~L~~~~r~~~~~l~~~i~~l~~~f~~n~~~~~~~~~~~~~~~~eL~g~p~~~~~~~~~~~~~~g~~ 85 (574)
+...+.+.++..|..|++++.+.+.+++..+...+.-|......+. .+ |.
T Consensus 130 y~~~l~~~~r~k~h~Ls~e~E~lLa~~~~~~~a~~~~f~~l~~ad~-~f-------------~~---------------- 179 (591)
T TIGR00181 130 YKRALEEIFRDKPHILSEEVEKLLSALSEVFGSPSDIYSTLTNADM-DF-------------GS---------------- 179 (591)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHhCchhhccHHHHHHHHHhccC-CC-------------Cc----------------
Confidence 3344456677888889998888888888888888887876433322 11 10
Q ss_pred CCCCCCCceEEeecCCcHHHHhhcCCCHHHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHHHHHHHcCCCchHHHHHHhh
Q 045994 86 NATAENGPWIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMK 165 (574)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~~~~~n~~~l~~ll~lR~~~A~llGy~s~a~~~l~~~ 165 (574)
+...+| ..++++.+++.++|.+++|+++||++|+++.+++......|..+|+++++.|.+.|+++||+||+++++.++
T Consensus 180 -~~~~~G-~~~~l~~~~~~~~l~~~~dr~~Rk~a~~a~~~~~~~~~~~~a~~l~~~v~~r~~~A~lrGy~s~~~~~l~~~ 257 (591)
T TIGR00181 180 -IEDYKG-KKYPITNSTYENFLQKNKDREIRKKAYESFYKAYRKHKNTFAALYYGNVQKNVFLAKLRNYESYIDASLFSD 257 (591)
T ss_pred -eecCCC-cEEeccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhccC
Confidence 001246 578999999999999999999999999999999876556789999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHhcCCCchhccCCCChhhHHHH
Q 045994 166 MATVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDG 245 (574)
Q Consensus 166 m~~pe~v~~fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~g 245 (574)
|+ |+.|..+|.++.....|.+++ +.++|++. .+.+++.+||+. +++.+. ..+.++++.+.+-
T Consensus 258 ~i-~~~v~~~l~~~v~~~~~~~~~----y~~~k~k~--lg~~~l~~~D~~--~~~~~~---------~~~~~~~~~a~~~ 319 (591)
T TIGR00181 258 EV-PREVYDNLYDTIKKNAPVLQR----YYKLRKKV--LKLDKMEPYDLY--LPLVKE---------KNPKFSIEEAKEL 319 (591)
T ss_pred CC-CHHHHHHHHHHHHHhhHHHHH----HHHHHHHH--hCCCcccHHHcc--CCCCCC---------cCCcccHHHHHHH
Confidence 97 555555555444444676655 33334443 357889999996 333211 1345667776555
Q ss_pred HHHHHHHHhcceeeeCCCCCCccccceeEEEEEcCCCCceeEeeccCCCCCCCCCCCccccccccccccccCCCCccccC
Q 045994 246 LFNLAKTLFGIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLP 325 (574)
Q Consensus 246 l~~~~~~lfgi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P 325 (574)
+..-+ +.||.++.. .|+. .+ +++ |||+++|+| |++||||+... ...|
T Consensus 320 v~~~~-~~~g~~~~~----------~~~~--~~--~~~-----wiD~~~r~g-K~~Ga~~~~~~------------~~~p 366 (591)
T TIGR00181 320 ILKSL-EPLGEEYIK----------ILKR--AF--NER-----WVDYAENKG-KRSGAYSIGGY------------KVKP 366 (591)
T ss_pred HHHHH-hccCHHHHH----------HHHH--Hh--hCC-----CeeecCCCC-CCCCcccCCCC------------CCCC
Confidence 55544 336654433 3332 12 233 999999999 78888997642 1367
Q ss_pred eEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcCHHHHHHHHh
Q 045994 326 VAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYHRDTLMSIAK 405 (574)
Q Consensus 326 ~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~~~vL~~~~~ 405 (574)
+| +|||++ ++++|.|||||||||||+++++..++..++ .+|+++||+||++||+|++++ +..
T Consensus 367 ~i--l~N~~~---------~~~dv~TLaHElGHa~H~~~~~~~~~~~~~--~~~~~~aE~aS~~~E~l~~~~-----l~~ 428 (591)
T TIGR00181 367 YI--LMNWDG---------TLNSVFTLAHELGHSMHSYFSSKHQPYPNS--DYSIFYAEIASTFNELLLADY-----LLK 428 (591)
T ss_pred eE--EEecCC---------CcchHHHHHHHhhhHHHHHHHccCCCCccC--CCCchhhhHhHHHHHHHHHHH-----HHh
Confidence 66 458876 999999999999999999999766555544 478999999999999999998 456
Q ss_pred hccCCCCCcHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHhhccCC---CCCCCCHHHHHHHHHHhcCCCCCC--CC-CC
Q 045994 406 HYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELHTNYV---PGGSESVFDVDQRVSKTTQVLPPL--PE-DR 479 (574)
Q Consensus 406 h~~t~~~lp~~~~~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~---~~~~~~~~~~~~~l~~~~~~~~~~--~~-~~ 479 (574)
|+ ++++.+..+++..+. .++. .+++|++++.||+.+|.... +.+.++++++|.+++++|.|.... +. ..
T Consensus 429 ~~-~~~~~k~~~l~~~l~--~~~~--~~~~q~~~~~Fe~~~~~~~~~~~~lt~~~l~~~~~~~~~~~~g~~~~~~~~~~~ 503 (591)
T TIGR00181 429 NS-NDPEMKIYILLERIS--NFFG--TFTRQTLFAEFEYEAYELIEEGEPLTAETLNEIYANLLKKYFGDLVKIDEGAGL 503 (591)
T ss_pred hC-CCHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCccccCCcccc
Confidence 66 455666777777664 2333 46899999999999997532 224567899999999998664221 22 22
Q ss_pred CCCcccccccCCcccchhhHHHHHHHHH--HHHHHHHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCC
Q 045994 480 FLCSFSHIFAGGYAAGYYSYKWAEVLSA--DAFSAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPS 557 (574)
Q Consensus 480 ~~~~f~Hl~~~~Y~a~YY~Yl~a~~~A~--~i~~~f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~ 557 (574)
++.+++|+| .+ ||+|.||.+++. .+|+++.+++. .++++|+ .+|+.|||++|.++++.+ |-|++
T Consensus 504 ~w~~~~Hfy----~~-fY~Y~Ya~g~~~a~~l~~~~~~~~~-------~~~~~Y~-~~L~~Ggs~~p~ell~~~-Gvd~~ 569 (591)
T TIGR00181 504 TWMRIPHFY----MG-FYVYKYATGQVAATALYEKIKEEGK-------GAVEKYL-KFLKSGGSKYPLETLKIA-GVDLT 569 (591)
T ss_pred eeeecCccc----CC-CcCHHHHHHHHHHHHHHHHHHHCCc-------cHHHHHH-HHHhCcCCCCHHHHHHHc-CcCCC
Confidence 335899975 44 888888765544 45888888763 5799999 899999999999999996 99999
Q ss_pred chHHHHh
Q 045994 558 PEPLLRH 564 (574)
Q Consensus 558 ~~~~~~~ 564 (574)
.++|++.
T Consensus 570 ~~~~~~~ 576 (591)
T TIGR00181 570 KPQPWQA 576 (591)
T ss_pred ChHHHHH
Confidence 9998864
No 12
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=100.00 E-value=1.9e-51 Score=453.79 Aligned_cols=377 Identities=18% Similarity=0.215 Sum_probs=287.3
Q ss_pred EEeecCCcHHHHhhcCCCHHHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHHHHHHHcCCCchHHHHH--HhhcC-CHHH
Q 045994 95 IITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSM--AMKMA-TVDK 171 (574)
Q Consensus 95 ~~~~~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~~~~~n~~~l~~ll~lR~~~A~llGy~s~a~~~l--~~~m~-~pe~ 171 (574)
.++++ .+.++|.+ +||++||++|+++.+++.....++..++++++++|+++|+++||+||+++++ .++|+ +|++
T Consensus 143 ~~~l~--~~~~~l~~-~dr~~Rk~a~~a~~~~~~~~~~~~~~il~~lv~~R~~~Akl~Gy~s~~e~~~~~~~r~~~~~e~ 219 (549)
T TIGR02289 143 EKTLS--QLKPYLQD-PNRSTRKKAWYARSEFFAVVEEELDRIYDELVQIRTQIALNLGFSNYRDYMYKLKNRTDYSAED 219 (549)
T ss_pred eccHH--HhhHHhhC-CCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcccCCCHHH
Confidence 45553 47777875 9999999999999998876666788999999999999999999999999985 57888 9999
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHhcCCCchhccCCCChhhHHHHHHHHHH
Q 045994 172 AFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAK 251 (574)
Q Consensus 172 v~~fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~gl~~~~~ 251 (574)
|.+|++.+.+.+.|.+++. .+++++. .+.+++.+||+.| .++.....+||+.+.+++++..+++
T Consensus 220 v~~~l~~v~~~~~p~~~~~----~~~k~k~--lG~~~l~~wD~~~----------~~~~~~~~~~~~~e~~~~~~~~~~~ 283 (549)
T TIGR02289 220 CYKYRESILKYVVPLWTKL----RKIKKKR--LGIKTLRPWDESA----------VFLDGNVKPFGNVDFLLEKAEKMYK 283 (549)
T ss_pred HHHHHHHHHHHhHHHHHHH----HHHHHHh--CCCCcCChhhccC----------CCCCCCcCCCCCHHHHHHHHHHHhc
Confidence 9999999999988877642 2333332 3568899999962 3444556899999999999987776
Q ss_pred HHhcceeeeCCCCCCccccceeEEEEEcCCCCceeEeeccCCCCCCCCCCCccccccccccccccCCCCccccCeEEEEc
Q 045994 252 TLFGIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVAHMVC 331 (574)
Q Consensus 252 ~lfgi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P~~~l~~ 331 (574)
++ |.++.. +++ ..++..|+|+++|+| |++||||+.++. ...|+|+ |
T Consensus 284 ~l-~~~~~e----------------~~~---~~~~~~~iD~~~r~g-K~~Gayc~~~~~-----------~~~P~I~--~ 329 (549)
T TIGR02289 284 EL-SLEFYE----------------FFN---FMREKNLLDLESRKG-KAAGGYCTYLPK-----------YKAPFIF--S 329 (549)
T ss_pred CC-CcHHHH----------------HHH---HHHhcCccccCCCCC-CCCCcccCCCCC-----------CCCcEEE--E
Confidence 53 432221 111 122333999999999 788999987541 2478664 6
Q ss_pred cCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcCHHHHHHHHhhccCCC
Q 045994 332 NQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYHRDTLMSIAKHYQTGE 411 (574)
Q Consensus 332 nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~~~vL~~~~~h~~t~~ 411 (574)
||++ +++||.||+||||||+|+++++... ....+.+|+|+||+||++||+|+|++ +..++++++
T Consensus 330 Nf~~---------t~~dv~TL~HElGHa~H~~~s~~~~--~~~~~~~~~~~aE~aS~~~E~l~~~~-----l~~~~~~~e 393 (549)
T TIGR02289 330 NFNG---------TSGDIDVLTHEAGHAFHVYESRKDL--LPEYRWPTYEAAELASMSMELLSMPW-----WDLFYTDEK 393 (549)
T ss_pred eCCC---------ChhHHHHHHHHhhHHHHHHHhcCCc--ccccccCcchhhhhhHHHHHHHHHHH-----HHHHcCCcc
Confidence 8877 9999999999999999999998622 22334568999999999999999987 556777777
Q ss_pred CCcHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHhcCCCCC-C-----CCCCCCCccc
Q 045994 412 SLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELHTNYVPGGSESVFDVDQRVSKTTQVLPP-L-----PEDRFLCSFS 485 (574)
Q Consensus 412 ~lp~~~~~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-----~~~~~~~~f~ 485 (574)
+.+..+++.|..+..+ +.+|..+..|...+|.. .+.+.++++++|.+++++|.+... . ....++.+++
T Consensus 394 ~~~~~~~~~L~~~~~~-----~~~~~~~d~fe~~vy~~-~~lt~~e~~~~~~~l~~~y~~~~~~~~~~~~~~~~~W~~~~ 467 (549)
T TIGR02289 394 DLKKAKISHLKGALSF-----LPYGVIVDHFQHWVYEN-PNHTPEERDEKYAELEKRYQPSTVYIAGLELEIGTFWLRQL 467 (549)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHHHhCCCcccCCccccccCCcceeec
Confidence 7777888766643321 23566666666666653 223456889999999999874211 0 1122336899
Q ss_pred ccccCCcccchhhHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCC
Q 045994 486 HIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPS 557 (574)
Q Consensus 486 Hl~~~~Y~a~YY~Yl~a~~~A~~i~~~f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~ 557 (574)
|+|.+|++ ||+|.||+++|.++|+++.+++ +.+.++|. ++|+.|||++|.++++.+ |-+.+
T Consensus 468 H~~~~pFY--yy~Y~~a~~~a~~l~~~~~~~~-------~~~~~~Y~-~~L~~Ggs~~~~ell~~a-Gid~~ 528 (549)
T TIGR02289 468 HIFEVPFY--YIEYTIAQIGALQIYKIYKEDP-------EKALKDYK-KLCSAGGSQSFLELYETA-GLTFP 528 (549)
T ss_pred eeecCCCc--chhhHHHHHHHHHHHHHHHhCH-------HHHHHHHH-HHHhccCCcCHHHHHHHh-CCCCC
Confidence 99965553 6799999999999999998765 47889997 899999999999999996 87766
No 13
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=100.00 E-value=8e-53 Score=453.81 Aligned_cols=387 Identities=19% Similarity=0.267 Sum_probs=296.6
Q ss_pred CCceEEeecCCcHHHHhhcCCCHHHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHHHHHHHcCCCchHHHHHHhhcCCHH
Q 045994 91 NGPWIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMKMATVD 170 (574)
Q Consensus 91 ~g~~~~~~~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~~~~~n~~~l~~ll~lR~~~A~llGy~s~a~~~l~~~m~~pe 170 (574)
+| ..++++. .+.+++. ++|+++||++|+++.+++.....+|..+|++++++|.++|+++||+||+++.+.++| +|+
T Consensus 29 ~G-~~~~l~~-~~~~~~~-~~d~~~Rk~a~~a~~~~~~~~~~~~~~~l~~lv~~r~~~A~~~Gy~~~~~~~l~~~~-~~~ 104 (427)
T cd06459 29 DG-EELTLSQ-NLSNLLE-SPDREVRKKAFEALYKAYEKYENTLAAILNTLVKLRLTLAKLRGYDSYLEAALFNNN-IPE 104 (427)
T ss_pred CC-eEEeccH-HHHHHHh-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhccCC-CCH
Confidence 45 7899988 7777666 589999999999999988655557889999999999999999999999999999998 899
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHhcCCCchhccCCCChhhHHHHHHHHH
Q 045994 171 KAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLA 250 (574)
Q Consensus 171 ~v~~fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~gl~~~~ 250 (574)
.|.+||.++.+.++|.++++++.. ++.. +.+++.|||+.|+.... -.+.|+++.+++++..++
T Consensus 105 ~~~~~l~~v~~~~~p~~~~~~~~~---~~~l---g~~~l~~wD~~~~~~~~-----------~~~~~~~~~~~~~v~~~~ 167 (427)
T cd06459 105 DVYDFLIAVVKENVPLLHRYLKLK---KKLL---GLDKLRPYDLYAPLVSG-----------NPPKYTYEEAKELVLEAL 167 (427)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHH---HHHh---CCCcCcHhhcCCCCCCC-----------CCCcCcHHHHHHHHHHHH
Confidence 999999999999999888866532 2332 46789999997542211 125788888888888877
Q ss_pred HHHhcceeeeCCCCCCccccceeEEEEEcCCCCceeEeeccCCCCCCCCCCCccccccccccccccCCCCccccCeEEEE
Q 045994 251 KTLFGIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVAHMV 330 (574)
Q Consensus 251 ~~lfgi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P~~~l~ 330 (574)
+.+ |..+.. +.+ ..++..|+|+++||| |++||||+...+ ...| +++
T Consensus 168 ~~l-~~~~~~----------------~~~---~~~~~~~iD~~~r~g-K~~gaf~~~~~~-----------~~~p--~i~ 213 (427)
T cd06459 168 SPL-GPEYAE----------------FAK---RAFEERWIDVEPRKG-KRSGAYCTGLPP-----------GKHP--FIL 213 (427)
T ss_pred Hcc-CHHHHH----------------HHH---HHhhCCCeeccCCCC-CCCCeecCCCCC-----------CCCC--eEE
Confidence 552 422211 111 122333999999999 688889976431 1245 457
Q ss_pred ccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcCHHHHHHHHhhccCC
Q 045994 331 CNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYHRDTLMSIAKHYQTG 410 (574)
Q Consensus 331 ~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~~~vL~~~~~h~~t~ 410 (574)
|||.+ ++++|.|||||||||||++++++.++.+ +. ++|+|++|+||++||+|++++ +..|+++.
T Consensus 214 ~n~~~---------~~~~v~tl~HE~GHa~h~~~~~~~~~~~-~~-~~~~~~~E~~S~~~E~~~~~~-----l~~~~~~~ 277 (427)
T cd06459 214 MNFNG---------TLDDVFTLAHELGHAFHSYLSRDNQPYL-YS-DYPIFLAEIASTFNELLLFDY-----LLKFAKDP 277 (427)
T ss_pred ecCCC---------ChhhHHHHHHHhhHHHHHHHHccCCCcc-cC-CCCchhhHHHHHHHHHHHHHH-----HHHhCCCH
Confidence 79977 8999999999999999999998765523 33 478999999999999999987 34666553
Q ss_pred CCCcHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHhhccCCCC---CCCCHHHHHHHHHHhcCCCCCC---CCCCCCCcc
Q 045994 411 ESLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELHTNYVPG---GSESVFDVDQRVSKTTQVLPPL---PEDRFLCSF 484 (574)
Q Consensus 411 ~~lp~~~~~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~~~---~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~f 484 (574)
+ .+..++..++.. .. ..+.+|+.++.||+.+|...+++ +..++.++|+++.++|.+..+. +....+.+|
T Consensus 278 ~-~~~~~~~~~~~~---~~-~~~~~~~~~~~fe~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~g~~~~~~~~~~~~w~~~ 352 (427)
T cd06459 278 E-EKLYLLEHLLED---IR-ATLPRQTMFAEFEHEVYENPEEGEPLTAEELNEIYRELEKKYGGDLVEIDEEHGYEWARI 352 (427)
T ss_pred H-HHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCccccCCccCeeeeec
Confidence 1 222333333311 11 15689999999999999753332 3457889999999999886432 222233689
Q ss_pred cccccCCcccchhhHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCCchHHHHh
Q 045994 485 SHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLLRH 564 (574)
Q Consensus 485 ~Hl~~~~Y~a~YY~Yl~a~~~A~~i~~~f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~~~~~~~~ 564 (574)
+|++.+||+ ||+|+||.++|.++|+.|.+++ +.++++|+ ++|+.||+++|.++++.+ |.+++.+.+++.
T Consensus 353 ~H~~~~~fY--yy~Y~~g~~~a~~l~~~~~~~~-------~~~~~~y~-~~L~~Ggs~~~~ell~~~-g~d~~~~~~~~~ 421 (427)
T cd06459 353 PHFYYVPFY--VYPYAFGQLAALALYAKYKEDG-------EGAVEKYL-ELLKAGGSKSPLELLKKA-GVDLTSPDFWEE 421 (427)
T ss_pred CeecCCCCc--ChHHHHHHHHHHHHHHHHHHcC-------ccHHHHHH-HHHHccCCCCHHHHHHHc-CcCCCChHHHHH
Confidence 999975654 8899999999999999998875 36899998 899999999999999976 999999999875
No 14
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=100.00 E-value=1.6e-48 Score=434.39 Aligned_cols=383 Identities=17% Similarity=0.235 Sum_probs=283.5
Q ss_pred EEeecCCcHHHHhhcCCCHHHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHHHHHHHcCCCchHHHHHHhhcCCHHHHHH
Q 045994 95 IITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMKMATVDKAFE 174 (574)
Q Consensus 95 ~~~~~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~~~~~n~~~l~~ll~lR~~~A~llGy~s~a~~~l~~~m~~pe~v~~ 174 (574)
...++.+.+..+| .++|+++||++|+++.+.+......-..+|+.+++.|...|+++||+|+.++++..+.++++.+.+
T Consensus 184 ~~~~t~~~~~~~l-~~~dr~~Rk~a~~~~~~~~~~~~~~~a~~l~~~v~~~~~~a~~rgy~s~~e~~l~~~~i~~~~~~~ 262 (587)
T TIGR02290 184 EETLSLEQALNLL-RDPDAEVRKKAFKALLKAWEKNAPTLAAILNALAGDRLTEYRLRGYDHPLEPRLLYNRIDQETLDA 262 (587)
T ss_pred eEEcCHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHhhccCCCCHHHHHH
Confidence 3456666787766 568999999999999998775444456788999999999999999999999999988779999999
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHhcCCCchhccCCCChhhHHHHHHHHHHHHh
Q 045994 175 LLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLF 254 (574)
Q Consensus 175 fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~gl~~~~~~lf 254 (574)
|++.+.+. .|.+++.+. + +++. ++.+++.+||+.+ +. . ....+.++++.+.+.+...++. |
T Consensus 263 l~~~v~~~-~p~~~~y~~-~---k~~~--lgl~~l~~~D~~~--p~--------~-~~~~~~~~~e~a~~~v~~~~~~-l 323 (587)
T TIGR02290 263 MLEAIKEN-YPLFRRYYK-L---KAKL--LGKEKLDFYDLYA--PL--------G-DSSAKTYTFDEAKELVLEAFGK-F 323 (587)
T ss_pred HHHHHHHh-hHHHHHHHH-H---HHHH--hCCCcccHHHcCC--CC--------C-CCCCCeecHHHHHHHHHHHHHh-c
Confidence 99999999 586665332 2 2332 3578999999952 11 1 1123456777666655554422 2
Q ss_pred cceeeeCCCCCCccccceeEEEEEcCCCCceeEeeccCCCCCCCCCCCccccccccccccccCCCCccccCeEEEEccCC
Q 045994 255 GIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVAHMVCNQT 334 (574)
Q Consensus 255 gi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P~~~l~~nf~ 334 (574)
| +.+..-++. .+ +++ |+|+++|+| |++||||+.+.+ ...|+ ++|||+
T Consensus 324 ~----------~e~~~~~~~--~~--~~~-----~iD~~~r~g-K~~Ga~~~~~~~-----------~~~p~--i~~N~~ 370 (587)
T TIGR02290 324 S----------PEMADFAEK--AF--EEG-----WIDAEPRPG-KRGGAFCTGFPP-----------SKEPR--VLMNYD 370 (587)
T ss_pred C----------HHHHHHHHH--HH--HcC-----CcccCCCCC-CCCCcccCCCCC-----------CCCCE--EEEecC
Confidence 2 222222221 12 344 999999999 788999976431 12464 567887
Q ss_pred CCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcCHHHHHHHHhhccCCCCCc
Q 045994 335 PPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYHRDTLMSIAKHYQTGESLP 414 (574)
Q Consensus 335 ~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~~~vL~~~~~h~~t~~~lp 414 (574)
+ ++++|.|||||||||||++++++.. ..++ ++|+|+||+||++||+|+|++ +|+.+ .+
T Consensus 371 ~---------~~~~v~TL~HE~GHa~H~~ls~~~~--~~~~-~~~~~~aE~~S~~~E~l~~~~-ll~~~----~~----- 428 (587)
T TIGR02290 371 G---------SRRDVSTLAHELGHAYHSELAKDQP--LLNA-RYPMTLAETASIFAEMLLFDA-LLKEA----KT----- 428 (587)
T ss_pred C---------CchhHHHHHHHhhHHHHHHHHccCC--cccC-CCCchhhhHHHHHHHHHHHHH-HHhhC----CC-----
Confidence 7 8999999999999999999997743 3333 479999999999999999998 34433 22
Q ss_pred HHHHHHHHHHhchhcHH-HHHHHHHHHHHHHHhhccCC--CCCCCCHHHHHHHHHHhcCCCCC--CC-CCCCCCcccccc
Q 045994 415 EDVYLKLLAARTFRAGS-FSLRQLRFASVDLELHTNYV--PGGSESVFDVDQRVSKTTQVLPP--LP-EDRFLCSFSHIF 488 (574)
Q Consensus 415 ~~~~~~l~~~~~~~~~~-~~~~ql~~a~~D~~~H~~~~--~~~~~~~~~~~~~l~~~~~~~~~--~~-~~~~~~~f~Hl~ 488 (574)
++....+... ++..++ .+++|+.++.||+.+|.... ..+..++.++|.++.+++.|... .+ ...++.+++|+|
T Consensus 429 ~~~~~~~~~~-~l~~~~~~~~~q~~~~~fE~~l~~~~~~~~lt~~~l~~~~~~~~~~~~g~~~~~~~~~~~~w~~~~H~y 507 (587)
T TIGR02290 429 DEEKLSLLAE-KLEDAIATLVRIHARFLFERRFHEARKEGELSADDICDLMLEAQKESYGDALDESELHPYMWAYKPHFY 507 (587)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCcccccCCCCCceeecCCeec
Confidence 3333344433 445555 35899999999999997421 22345788999999988765422 22 234457899999
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCCchHHHHh
Q 045994 489 AGGYAAGYYSYKWAEVLSADAFSAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLLRH 564 (574)
Q Consensus 489 ~~~Y~a~YY~Yl~a~~~A~~i~~~f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~~~~~~~~ 564 (574)
.+||+ ||.|+||.++|.++|++|.+++. .+.++|+ .||+.||+++|.+++++ +|++|+.++|++.
T Consensus 508 ~~~fY--~y~Y~~g~~~a~~l~~~~~~~~~-------~~~~~y~-~~L~~Ggs~~p~ell~~-~G~d~~~~~~~~~ 572 (587)
T TIGR02290 508 HAPFY--NYPYTFGYLFVLGLYAKYREEGE-------SFVPKYI-ALLRDTGSMTPEELVKK-FGFDLTSPDFWQK 572 (587)
T ss_pred CCCCc--ChhhHHHHHHHHHHHHHHHHCCh-------hHHHHHH-HHHHCcCCCCHHHHHHH-hCcCCCChHHHHH
Confidence 76664 68999999999999999987653 4667798 89999999999999999 8999999999974
No 15
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-40 Score=362.34 Aligned_cols=385 Identities=16% Similarity=0.229 Sum_probs=282.6
Q ss_pred EEeecCCcHHHHhhcCCCHHHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHHHHHHHcCCCchHHHHHHhhcCCHHHHHH
Q 045994 95 IITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMKMATVDKAFE 174 (574)
Q Consensus 95 ~~~~~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~~~~~n~~~l~~ll~lR~~~A~llGy~s~a~~~l~~~m~~pe~v~~ 174 (574)
++++. ....+..++||++||++|+++.+.......+...+++.+++.+...|+.+||+|+.+.++.++-++.+.|.+
T Consensus 189 ~~~~~---~~~~ll~~~Dr~~Rk~A~~a~~~~~~~~~~t~a~~l~~~~~~~~~~a~~r~y~~~~~~~l~~~~i~~~~~d~ 265 (598)
T COG1164 189 KLTLE---QLLNLLEDPDREVRKAAYEALYKAYEKHRNTLAALLNTLVKVLAFLARARNYDDVIDSALLRNEVDREVVDN 265 (598)
T ss_pred eecHH---HHHHHhhCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHhCCCCHHHHHH
Confidence 55555 345556779999999999999998776556668899999999999999999999999999988889999999
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHhcCCCchhccCCCChhhHHHHHHHHHHHHh
Q 045994 175 LLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLF 254 (574)
Q Consensus 175 fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l~pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~gl~~~~~~lf 254 (574)
+.+.+.+...|.+.+..+ ++ ++. +|.++++|||+. ++. ......+-++.+...+-+...++. |
T Consensus 266 l~~~v~~~~~~l~~ry~~-~r--~k~---Lgl~~l~~yD~~--~p~--------~~~~~~~~~s~~ea~~~v~~~l~~-l 328 (598)
T COG1164 266 LIESVKEAFLPLLHRYYK-LR--AKV---LGLEKLRPYDLY--APL--------LDKDPSPEYSYEEAKELVLKALAP-L 328 (598)
T ss_pred HHHHHHHhcchHHHHHHH-HH--HHH---hCcccCCHHhhc--CCc--------ccCCCCccccHHHHHHHHHHHHHh-h
Confidence 999999787787776554 32 233 468999999996 331 112234455666555444443322 2
Q ss_pred cceeeeCCCCCCccccceeEEEEEcCCCCceeEeeccCCCCCCCCCCCccccccccccccccCCCCccccCeEEEEccCC
Q 045994 255 GIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVAHMVCNQT 334 (574)
Q Consensus 255 gi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P~~~l~~nf~ 334 (574)
|+.+..-++. .+ +++ |+|+++|+| |++||||++.+. ...|.|+| |+.
T Consensus 329 ----------g~ey~~~~~~--a~--~~~-----WiD~~~~~g-KrsGaYs~~~~~-----------~~~p~Ilm--N~~ 375 (598)
T COG1164 329 ----------GPEYAKIARR--AF--DER-----WIDVYPRKG-KRSGAYSIGFYK-----------GDHPFILM--NYD 375 (598)
T ss_pred ----------CHHHHHHHHH--HH--hcC-----CeeccCCCC-CCCCcccCCCCC-----------CCCCeEEE--eCC
Confidence 3344433443 22 235 999999999 788999987541 15888887 554
Q ss_pred CCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccccccCcccccccccccchhhHHHhhcCHHHHHHHHhhccCCCCCc
Q 045994 335 PPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYHRDTLMSIAKHYQTGESLP 414 (574)
Q Consensus 335 ~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~~~vL~~~~~h~~t~~~lp 414 (574)
+ +.+||.||+||+||+||+.+++...+.+.+ .+|+.+||+||+++|.+++++. ...+++.
T Consensus 376 g---------t~~dV~TLaHElGHs~Hs~~s~~~qp~~~~--~~~i~~AEiAS~fnE~l~~~~l-----l~~~~~~---- 435 (598)
T COG1164 376 G---------TLRDVFTLAHELGHSVHSYFSRKHQPYLYA--DYSIFLAEIASTFNEMLLFDYL-----LERFKDP---- 435 (598)
T ss_pred C---------chhHHHHHHHHccHHHHHHHHhccCCcccc--CCchHHHHHHHHHHHHHHHHHH-----HHHcCCH----
Confidence 4 999999999999999999999987664543 4689999999999999999882 2333331
Q ss_pred HHHHHHHHHHhchhcH-HHHHHHHHHHHHHHHhhccCC---CCCCCCHHHHHHHHHHhcCCCC--CCCC-CCCCCccccc
Q 045994 415 EDVYLKLLAARTFRAG-SFSLRQLRFASVDLELHTNYV---PGGSESVFDVDQRVSKTTQVLP--PLPE-DRFLCSFSHI 487 (574)
Q Consensus 415 ~~~~~~l~~~~~~~~~-~~~~~ql~~a~~D~~~H~~~~---~~~~~~~~~~~~~l~~~~~~~~--~~~~-~~~~~~f~Hl 487 (574)
++.+. ++.. ..... -.+.||+.++.|++.+|.... +.+.+.++++|.++.++|.|.. ..++ ..++++++||
T Consensus 436 ~~~~~-il~~-~l~~~~~t~~rq~~f~~FE~~~h~~~~~~~~lt~~~l~~~~~~l~~~y~gd~~~~d~~~~~~W~~ipHf 513 (598)
T COG1164 436 EERLA-ILEE-KLEGFFATLFRQTLFAEFEHRVHELIEEGEELTAEELNELYLELQKEYYGDAVKLDELSGLEWARIPHF 513 (598)
T ss_pred HHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCccccCcccccchhhcCee
Confidence 22222 2211 11111 135899999999999999733 3356678999999999999864 2233 2344899999
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCCchHHHHh
Q 045994 488 FAGGYAAGYYSYKWAEVLSADAFSAFEDAGLNDSKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLLRH 564 (574)
Q Consensus 488 ~~~~Y~a~YY~Yl~a~~~A~~i~~~f~~~~~~~~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~~~~~~~~ 564 (574)
+.+||+ +|-|..|.++|..++..+..++. ..+-+.|. ++|+.|||.+|.++++ ..|-|++.+++++.
T Consensus 514 y~~pFY--vy~Ya~G~~~a~~l~~~~~~~~~------~~~~~~y~-~~Lk~GgS~~p~ell~-~~GiD~~~~~~~~~ 580 (598)
T COG1164 514 YHSPFY--VYQYATGQLAALALYAKILTNDA------EAFEKYYI-AFLKSGGSKSPLELLK-IAGIDLTTPDPWEE 580 (598)
T ss_pred eecCce--ehHhHHHHHHHHHHHHHHHhccH------HHHHHHHH-HHHhCCCCCCHHHHHH-HcCCCCCCchHHHH
Confidence 976654 66888889999999998887752 24445554 8999999999999999 66999999888874
No 16
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=99.92 E-value=8.2e-23 Score=218.94 Aligned_cols=385 Identities=16% Similarity=0.134 Sum_probs=236.3
Q ss_pred cCCcHHHHhhcCCCHHHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHHHHHHHcCCCchHHHHHHhhcC-CHHHHHHHHH
Q 045994 99 DAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAMKMA-TVDKAFELLE 177 (574)
Q Consensus 99 ~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~~~~~n~~~l~~ll~lR~~~A~llGy~s~a~~~l~~~m~-~pe~v~~fL~ 177 (574)
..+.+..+|..++|++.|+.+|+++..... ..-..++.++|++|++.|+.+||+||.++. +.- +++++..+++
T Consensus 32 ~~~~l~~i~~~s~D~~~r~~aW~~w~~~~g---~~~~~~y~~lV~lrn~~A~~~Gf~n~~~~w---R~~Ye~~d~~~~~e 105 (477)
T cd06461 32 LEPDLESIMAKSRDYDELLYAWEGWRDAVG---PPMRPLYERYVELANEAAKLNGFVDAGEYW---RSEYETPDFEQDVE 105 (477)
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHh---HhcCCHHHHHHHHH
Confidence 345788999999999999999999976443 256789999999999999999999999998 334 7899999999
Q ss_pred HHHhhccchHHHHHHHHHH--HHHhcCCC--CCCCCccccHHHHHHHHHHH---------------hcCCCchhccCCCC
Q 045994 178 KLQSASWDPAVQDMEDLKS--FSKSQGAL--EADKLDHWDIGFWSERLRES---------------KYEINEEELRPYFS 238 (574)
Q Consensus 178 ~l~~~~~p~~~~e~~~l~~--~k~~~~~~--~~~~l~pWD~~y~~~~~~~~---------------~~~~d~~~l~~yf~ 238 (574)
.|.+.++|...+ +....+ +....+.. ..+.+-||++ ..+...+. ..+++++-++.-++
T Consensus 106 ~i~~~v~Ply~~-Lh~~~r~~L~~~y~~~~~d~~~~iPahl--~gn~~~q~W~~~~~~~~p~p~~~~~dv~~~l~~~~~t 182 (477)
T cd06461 106 RLWEELKPLYLQ-LHAYVRRKLRKKYGDDVVNRDGPIPAHL--LGNMWAQSWSNIYDLVKPYPGKPLLDVTDAMVEQGYT 182 (477)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcccccCCCCCCCcccc--ccCccccccccccccccCCCCCCCCChHHHHHHcCCC
Confidence 999999997554 322211 11222110 1134446665 12222210 00111110111111
Q ss_pred hhhHHHHHHHHHHHHhcceeeeCCCCCCccccceeEEEEEcCCCCceeEeeccC---------CCCCCCCCCCccccccc
Q 045994 239 LPKVMDGLFNLAKTLFGIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDP---------YSRPSEKKGGAWMDEVV 309 (574)
Q Consensus 239 ~~~vl~gl~~~~~~lfgi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylDl---------~~R~gKk~~ga~~~~~~ 309 (574)
...|+..+++.|.- +| ..|+ ..|||| + |.+|+..+
T Consensus 183 ----~~~mf~~~~~ff~s----------------------------mg--L~dl~~~fw~~s~~~rp~k-~-~~~C~~sa 226 (477)
T cd06461 183 ----AKRMFKEAEEFFTS----------------------------LG--LPPMPPSFWTKSMLEKPTD-R-EVVCHASA 226 (477)
T ss_pred ----HHHHHHHHHHHHHH----------------------------CC--CCcCChHHHhhccccCCCC-C-CCccCccc
Confidence 12233333332221 11 4455 889995 5 55776622
Q ss_pred cccccccCCCCccccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhh-ccCccccccCcccccc--cccccc
Q 045994 310 SRSRVLSRNGTTSRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHML-TKQDESLVAGIRGIEW--DAVELP 386 (574)
Q Consensus 310 ~~~~~~~~~g~~~~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~ll-s~t~~~~~sgt~~~~~--df~E~p 386 (574)
.. + + ...-|.|.+ |+.. +..||.|+.|||||+...+. .+..+....|. +++. .++|+.
T Consensus 227 wd---~-~---~~~d~rI~~--c~~~---------t~~D~~t~~HE~GH~~yy~~y~~~p~~~r~~a-np~fheav~e~~ 287 (477)
T cd06461 227 WD---F-Y---NGKDFRIKM--CTKV---------NMEDFVTVHHEMGHIQYYLQYKDQPVLFREGA-NPGFHEAVGDAI 287 (477)
T ss_pred cc---C-C---CCCCcceee--CCCC---------CHHHHHHHHHHHHHHHHHHHhccCCHHHhCCC-CCChHHHHHHHH
Confidence 10 0 0 124566666 4433 99999999999999994333 33332223343 3567 899999
Q ss_pred hhhH---HHhhcCHHHHHHHHhhccCCCCCcHHHHHHHHHHhchhcHHHHHHHHHHHHHHHHhhccCCCC-CCCCHHHHH
Q 045994 387 SQFM---ENWCYHRDTLMSIAKHYQTGESLPEDVYLKLLAARTFRAGSFSLRQLRFASVDLELHTNYVPG-GSESVFDVD 462 (574)
Q Consensus 387 S~l~---E~~~~~~~vL~~~~~h~~t~~~lp~~~~~~l~~~~~~~~~~~~~~ql~~a~~D~~~H~~~~~~-~~~~~~~~~ 462 (574)
|+.| |++..-+ +|..+ .+.. ++-++.+.. +....+ ....+..++|...|..++.. +.++.++.|
T Consensus 288 smS~~tpe~L~~~~-ll~~~--~~~~-----~~~i~~l~~--~al~~i--~fLP~~~~vD~fr~~vy~~~~~~~e~n~~W 355 (477)
T cd06461 288 ALSVSTPKHLHKIG-LLDSE--VDDE-----EADINFLLK--MALDKI--AFLPFGYLLDKWRWDVFDGEIPKDDYNKAW 355 (477)
T ss_pred HHhcCCHHHHhhcc-ccccc--CCCc-----HHHHHHHHH--HHHHHH--HHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999 8887422 22221 0111 222222221 112222 33577789999988876542 346789999
Q ss_pred HHHHHhcCCCCC-CC---CCCCCCcccccccCCcccchhhHHHHHHHHHHHHHHH-HHcCCCCc------hhhHHHHHHH
Q 045994 463 QRVSKTTQVLPP-LP---EDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAF-EDAGLNDS------KAVQDTGRRF 531 (574)
Q Consensus 463 ~~l~~~~~~~~~-~~---~~~~~~~f~Hl~~~~Y~a~YY~Yl~a~~~A~~i~~~f-~~~~~~~~------~~~~~~g~~y 531 (574)
.+|.++|.++.+ .+ .+.....+-|+-. ...|-.|..|++++-.+|..+ ...+...| .-++++|++|
T Consensus 356 weL~~~yqgv~pP~~r~~~~fd~gak~h~~~---~~PYi~YflA~ilqfQf~~~lc~~a~~~~plh~C~~~~s~~Ag~~l 432 (477)
T cd06461 356 WELREKYQGVVPPVPRSEEDFDPGAKYHVPA---NTPYIRYFLSFILQFQFHKALCKAAGHTGPLHKCDIYGSKEAGKKL 432 (477)
T ss_pred HHHHHHhcCCCCCCCCCccccCccceeeccC---CCcHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccChHHHHHHH
Confidence 999999998632 21 1112234556642 223779999999998888764 22221100 0147999999
Q ss_pred HHHHHcCCCCCCHHHHHHHhhCC-CCCchHHHH
Q 045994 532 RETILAFGGGKPPLEVFVEFRGR-EPSPEPLLR 563 (574)
Q Consensus 532 r~~~L~~Ggs~~p~ell~~flGr-~p~~~~~~~ 563 (574)
+ ++|+.|||++..++++.+.|. +.+..++++
T Consensus 433 ~-~~l~lG~S~~w~e~le~~~g~~~~s~~~l~e 464 (477)
T cd06461 433 R-AMLSLGSSKPWPEALEALTGEREMDASALLE 464 (477)
T ss_pred H-HHHhCcCCCCHHHHHHHhcCCCCCChHHHHH
Confidence 9 899999999999999999775 677777776
No 17
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=99.87 E-value=1.1e-19 Score=189.91 Aligned_cols=337 Identities=16% Similarity=0.181 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-chHHHHHHh--hcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCC--
Q 045994 135 TPIIDRILKLRLEKAKLLGYK-NYAEVSMAM--KMATVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKL-- 209 (574)
Q Consensus 135 ~~~l~~ll~lR~~~A~llGy~-s~a~~~l~~--~m~~pe~v~~fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l-- 209 (574)
.+.|++++.+..+.|..+|+. +--|.-|.. ...+.+.+..+...|...+.|.+.+ + . .+.. .....+
T Consensus 30 ~p~L~~~v~l~re~a~~~~~~~~~YdaLLd~ye~g~~~~~id~~F~~lk~~l~~l~~~-v---~---~~~~-~~~~~~~~ 101 (396)
T cd06460 30 APYLEKIVELSREIAEYLGYEKHPYDALLDLYEPGMTTAKLDAIFAELKAGLVPLLKK-V---L---EKQK-PPDDSLLS 101 (396)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHH-H---H---hcCC-CCCccccC
Confidence 678999999999999999984 444444443 2238999999999999887665443 1 1 1110 001111
Q ss_pred ccccHHHHHHHHHHHhcCCCchhccCCCChhhHHHHHHHHHHHHhcceeeeCCCCCCccccceeEEEEEcCCCCceeEee
Q 045994 210 DHWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFY 289 (574)
Q Consensus 210 ~pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~gl~~~~~~lfgi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iy 289 (574)
.+++. +.- ..+..-+.+.+|..| +.+ |
T Consensus 102 ~~~~~-------------------------~~Q-~~~~~~~~~~~g~df----------------------~~g-----r 128 (396)
T cd06460 102 GPFPE-------------------------EKQ-EALGRELLEALGFDF----------------------DRG-----R 128 (396)
T ss_pred CCCCH-------------------------HHH-HHHHHHHHHHhCCcc----------------------cCC-----e
Confidence 22332 211 111122223344311 233 8
Q ss_pred ccCCCCCCCCCCCccccccccccccccCCCCccccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhh-hccC-
Q 045994 290 FDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHM-LTKQ- 367 (574)
Q Consensus 290 lDl~~R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~l-ls~t- 367 (574)
+|..++| ||+... + .- +.+.+|+.... -.+.|.|+.||+|||+|.. +...
T Consensus 129 iD~s~hp-------F~~~~~---------~---~d--vRItt~y~~~d-------~~~~l~t~iHE~GHalye~~l~~~~ 180 (396)
T cd06460 129 LDVSAHP-------FTGGLG---------P---GD--VRITTRYDEND-------FRSALFSTIHETGHALYEQGLPPEL 180 (396)
T ss_pred eecCCCC-------CCCCCC---------C---CC--ceEEeeeCCcc-------hHHHHHHHHHHhhHHHHHhcCCHhH
Confidence 8877765 443321 0 12 34566776511 2789999999999999999 6521
Q ss_pred ccccccCcccccccccccchhhHHHhhcC-HH----HHHHHHhhccCC-CCCcHHHHHHHHHH-h-chhc--H---HHHH
Q 045994 368 DESLVAGIRGIEWDAVELPSQFMENWCYH-RD----TLMSIAKHYQTG-ESLPEDVYLKLLAA-R-TFRA--G---SFSL 434 (574)
Q Consensus 368 ~~~~~sgt~~~~~df~E~pS~l~E~~~~~-~~----vL~~~~~h~~t~-~~lp~~~~~~l~~~-~-~~~~--~---~~~~ 434 (574)
.-+.+.+ +.++-++|.+|.|+|+.+.+ .. ++..+..++... .....+.+-.+... + .+.+ + ...+
T Consensus 181 ~~~pl~~--~~sm~ihESqS~f~E~~vgrs~~F~~~l~~~l~~~f~~~~~~~~~e~~~~~~n~v~ps~iRveADEvty~l 258 (396)
T cd06460 181 RGTPLGG--GASMGIHESQSRLWENQVGRSRAFWEFLYPKLKKTFPEQLKDVSLENFYRAVNRVQPSLIRVEADEVTYNL 258 (396)
T ss_pred ccCCccc--CCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcccccccCCHHHHHHHHhhcCccceeeecchhhHHH
Confidence 1122222 35799999999999988855 22 333343444221 12233323222211 1 1111 1 1357
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCcccchhhHHHHHHHHHHHHHHHH
Q 045994 435 RQLRFASVDLELHTNYVPGGSESVFDVDQRVSKTTQVLPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFE 514 (574)
Q Consensus 435 ~ql~~a~~D~~~H~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~Hl~~~~Y~a~YY~Yl~a~~~A~~i~~~f~ 514 (574)
++++...|+..+... +.+..++.++|++..++|.|+.+..+.....+..|.+.|.+| =+|+|..+.++|+.+++..+
T Consensus 259 HiilR~e~Ek~l~~G--~l~v~dLp~~W~~~~~eylG~~~~~d~~g~lQd~HW~~g~fG-YfptYalG~l~Aaql~~~~~ 335 (396)
T cd06460 259 HIMLRYELEKALIEG--DLEVADLPEAWNEKMKEYLGIRPPNDAEGCLQDIHWSGGSFG-YFPTYTLGNLYAAQLFAAAK 335 (396)
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHcCCCCCCCccccccccccccCcCC-cCchhHHHHHHHHHHHHHHH
Confidence 899999999988764 445678999999999999998654333333577888865332 16799999999999998876
Q ss_pred HcCCCCc-----hhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCCchHHHHhC
Q 045994 515 DAGLNDS-----KAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLLRHN 565 (574)
Q Consensus 515 ~~~~~~~-----~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~~~~~~~~~ 565 (574)
++..+-. +......+-++++|++.|++.+|.|++++.+|.++++++|++.+
T Consensus 336 ~~~~~~~~~i~~g~f~~~~~wL~e~i~~~G~~~~p~eLl~~atG~~l~~~~f~~yL 391 (396)
T cd06460 336 KDLPDIDEQIERGDFSPLLEWLRENIHQHGSRYSPDELLKKATGEPLNPEYFLEYL 391 (396)
T ss_pred HhCccHHHHHhccChHHHHHHHHHHHHhccCCCCHHHHHHHHhCCCCChHHHHHHH
Confidence 6532110 00112556778889999999999999999999999999999875
No 18
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=99.46 E-value=1.4e-10 Score=124.93 Aligned_cols=338 Identities=16% Similarity=0.213 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCc-hHHHHHHh--hcCCHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhcCCCCCCCCcc
Q 045994 135 TPIIDRILKLRLEKAKLLGYKN-YAEVSMAM--KMATVDKAFELLEKLQSASWDPAVQDMEDLKSFSKSQGALEADKLDH 211 (574)
Q Consensus 135 ~~~l~~ll~lR~~~A~llGy~s-~a~~~l~~--~m~~pe~v~~fL~~l~~~~~p~~~~e~~~l~~~k~~~~~~~~~~l~p 211 (574)
.+.|++++.++.++|..+|++. --|.-|.. ..+|.+.+..+.+.|.+.+.|.+++-. .+...+....
T Consensus 130 ~P~Le~iv~l~re~a~~~~~~~~~YDaLLd~yEpg~t~~~ld~~F~~lk~~l~~l~~~i~-------~~~~~~~~~~--- 199 (494)
T PF02074_consen 130 APYLEKIVELQREIAEYLGYELSPYDALLDDYEPGMTTEKLDEIFAELKAFLVPLLQKIL-------EKQKQPDDSF--- 199 (494)
T ss_dssp HHHHHHHHHHHHHHHHHCTSTTSHHHHHHHHHSTT--HHHHHHHHHHHHHHHHHHHHHHH-------CHTCCHTGGG---
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCCCCcc---
Confidence 6899999999999999999884 44444443 223899999999999998877554311 1100000011
Q ss_pred ccHHHHHHHHHHHhcCCCchhccCCCChhhHHHHHHHHHHHHhcceeeeCCCCCCccccceeEEEEEcCCCCceeEeecc
Q 045994 212 WDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFD 291 (574)
Q Consensus 212 WD~~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~gl~~~~~~lfgi~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylD 291 (574)
+..-||.+. ...+..-+-+.+|..|.. | .+|
T Consensus 200 ---------------------l~~~~~~~~-Q~~~~~~~~~~~G~d~~~---------------------g------rld 230 (494)
T PF02074_consen 200 ---------------------LHGPFPEEK-QKAFSRELLEYLGFDFDR---------------------G------RLD 230 (494)
T ss_dssp ---------------------GGSB--HHH-HHHHHHHHHHHHT--GCG---------------------E------EEE
T ss_pred ---------------------CCCCCCHHH-HHHHHHHHHHHcCCCccc---------------------e------EEe
Confidence 111122222 122222233455753222 1 344
Q ss_pred CCCCCCCCCCCccccccccccccccCCCCccccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCccc-
Q 045994 292 PYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDES- 370 (574)
Q Consensus 292 l~~R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~~~- 370 (574)
.-. +.+|+...+ + =+-+...+.+.. =.+.+....||.||||-..-....+.
T Consensus 231 ~s~-------HPFt~~~~~-------~-------DvRiTTry~e~d-------~~~~l~s~iHE~GHalYEq~~~~~~~~ 282 (494)
T PF02074_consen 231 ESA-------HPFTTGFGP-------N-------DVRITTRYDEDD-------FLSALFSTIHETGHALYEQGLPPEYYG 282 (494)
T ss_dssp E-S-------S-EEEEEET-------T-------EEEEEE--BTTB-------THHHHHHHHHHHHHHHHHHTS-GGGTT
T ss_pred cCC-------CCCCCCCCC-------C-------ceeeeccccccc-------HHHHHHHHHHHHHHHHHHcCCChhHcc
Confidence 221 223333211 0 134444553211 35667788899999998775554432
Q ss_pred -cccCcccccccccccchhhHHHhh-cCHHHHHHH----HhhccCCCCCcHHHHHHHH-HHh-chhc--H---HHHHHHH
Q 045994 371 -LVAGIRGIEWDAVELPSQFMENWC-YHRDTLMSI----AKHYQTGESLPEDVYLKLL-AAR-TFRA--G---SFSLRQL 437 (574)
Q Consensus 371 -~~sgt~~~~~df~E~pS~l~E~~~-~~~~vL~~~----~~h~~t~~~lp~~~~~~l~-~~~-~~~~--~---~~~~~ql 437 (574)
.+. .++++-+-|--|-|+|+.+ ....+...+ -.++.....++.+-+-+.. .-+ .+.+ + ...+..+
T Consensus 283 tpl~--~~~smgiHESQSrf~En~vgrS~~Fw~~~~p~l~~~f~~~~~v~~e~~y~~~N~V~ps~IR~eADElTY~lHIi 360 (494)
T PF02074_consen 283 TPLG--EGVSMGIHESQSRFWENMVGRSRAFWEFLYPKLQEHFPQLKDVSLENFYRAINRVKPSLIRVEADELTYPLHII 360 (494)
T ss_dssp STTS--S-S-HHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHCGGGTT-SHHHHHHHHT-----S-GGG--TTTHHHHHH
T ss_pred Cccc--cccccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHccCCCcccchhhHHHHHHHHHH
Confidence 232 2467889999999999965 334443333 2334333344443332222 111 1111 1 1235566
Q ss_pred HHHHHHHHhhccCCCCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCcccchh-hHHHHHHHHHHHHHHHHHc
Q 045994 438 RFASVDLELHTNYVPGGSESVFDVDQRVSKTTQVLPPLPEDRFLCSFSHIFAGGYAAGYY-SYKWAEVLSADAFSAFEDA 516 (574)
Q Consensus 438 ~~a~~D~~~H~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~Hl~~~~Y~a~YY-~Yl~a~~~A~~i~~~f~~~ 516 (574)
+.-.++..+-.. ..+..++-++|++..++|.|+.+..+.....+=.|-.+|.+| |+ +|..+.++|+.+|+..+++
T Consensus 361 lRyEiEk~li~g--~l~v~dLP~~Wn~km~eyLGi~p~~d~eG~LQDvHWs~G~fG--YFPtY~LG~~~AaQl~~~~~~~ 436 (494)
T PF02074_consen 361 LRYEIEKALING--ELSVDDLPEAWNEKMEEYLGITPPNDAEGVLQDVHWSSGSFG--YFPTYALGNIYAAQLFAAMKKD 436 (494)
T ss_dssp HHHHHHHHHHTT--SS-GGGHHHHHHHHHHHHHS---SSCTTTTTS-STTTTT-TS---THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCChhhhHHHHHHHHHHHcCCCCCCCCccccccccccCCccc--cchhhHHHHHHHHHHHHHHHHH
Confidence 667777777653 334678999999999999998643333333455677666564 77 9999999999999866433
Q ss_pred CC-CC----chhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCCchHHHHhC
Q 045994 517 GL-ND----SKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLLRHN 565 (574)
Q Consensus 517 ~~-~~----~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~~~~~~~~~ 565 (574)
-. .. .+.......-++++|-+.|+..+|.|++++..|.++++++|++.+
T Consensus 437 ~pd~~~~i~~G~f~~i~~WL~e~Ih~~G~~y~~~eLl~~aTGe~l~~~~~~~YL 490 (494)
T PF02074_consen 437 IPDLDEQIAKGDFSPIRDWLRENIHQYGSRYTPDELLKKATGEPLNPEYFIDYL 490 (494)
T ss_dssp HTTHHHHHHTT--HHHHHHHHHHTGGGTTSS-HHHHHHHHHSSS--THHHHHHH
T ss_pred ccCHHHHHHcCChHHHHHHHHHHHHHhccCCCHHHHHHHHhCCCCCHHHHHHHH
Confidence 21 10 001245667788999999999999999999999999999999875
No 19
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=99.25 E-value=3.5e-09 Score=109.91 Aligned_cols=357 Identities=18% Similarity=0.208 Sum_probs=203.5
Q ss_pred HHHHHHHHHhcccCCCC-CCcHHHHHHHHHHHHHHHHHcCCCchHHHHHHh---hcCCHHHHHHHHHHHHhhccchHHHH
Q 045994 115 LREEVYRAYVSRASSGD-LDNTPIIDRILKLRLEKAKLLGYKNYAEVSMAM---KMATVDKAFELLEKLQSASWDPAVQD 190 (574)
Q Consensus 115 ~Rk~~~~a~~~~~~~~~-~~n~~~l~~ll~lR~~~A~llGy~s~a~~~l~~---~m~~pe~v~~fL~~l~~~~~p~~~~e 190 (574)
++-++..+|.+.-.+++ .-..+.|.+++.+-.+.|..+||.-..==+|-+ ...+.++|..+.+.|.+.+.|.+.+-
T Consensus 108 ~~s~a~~aWreAr~knDf~~F~p~Lekiv~l~re~A~~~~~~~~pYdaLld~yEpG~t~~~i~~vF~~Lk~~L~~ll~kv 187 (497)
T COG2317 108 LTSKAEHAWREAREKNDFSIFKPYLEKIVELKREFAEYRGYEEHPYDALLDLYEPGLTVRDVDRVFAELKKELVPLLDKV 187 (497)
T ss_pred HHHHHHHHHHHHhhcccHhhhhHHHHHHHHHHHHHHHhcccccCcHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544322211 123688999999999999999999733223333 22388999999999999987765553
Q ss_pred HHHHHHHHHhcCCCCCCCC-c-cccHHHHHHHHHHHhcCCCchhccCCCChhhHHHHHHHHHHHHhcceeeeCCCCCCcc
Q 045994 191 MEDLKSFSKSQGALEADKL-D-HWDIGFWSERLRESKYEINEEELRPYFSLPKVMDGLFNLAKTLFGIDIEPADGLAPVW 268 (574)
Q Consensus 191 ~~~l~~~k~~~~~~~~~~l-~-pWD~~y~~~~~~~~~~~~d~~~l~~yf~~~~vl~gl~~~~~~lfgi~~~~~~~~~~~w 268 (574)
.+. .+. +....+ . ++|.. . .+.+..-+-+++|..|+.
T Consensus 188 ~~~-----~~~--~~~~~~~~~~~~~e-------------------------~-q~~~~~~vl~~lGfdf~~-------- 226 (497)
T COG2317 188 LEK-----GKS--PRSDLLEKEKYDKE-------------------------K-QEALGLRVLELLGFDFER-------- 226 (497)
T ss_pred Hhc-----cCC--CcccccccCCCCHH-------------------------H-HHHHHHHHHHHhCCCccC--------
Confidence 221 100 111111 1 22221 1 111111111445642221
Q ss_pred ccceeEEEEEcCCCCceeEeeccCCCCCCCCCCCccccccccccccccCCCCccccCeEEEEccCCCCCCCCCCCCChhh
Q 045994 269 NNDVRFYCVKDSSGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVAHMVCNQTPPVGDKPSLMTFRE 348 (574)
Q Consensus 269 ~~dV~~~~v~~~~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P~~~l~~nf~~~~~~~p~ll~~~~ 348 (574)
| -+|.-+-| +|+.+.. +. |.+.+.+.... -.+.
T Consensus 227 -------------G------RlD~S~HP-------F~~g~~~--------~D------VRITTRy~~~d-------f~~a 259 (497)
T COG2317 227 -------------G------RLDVSVHP-------FTTGLPI--------ND------VRITTRYNEQD-------FRSA 259 (497)
T ss_pred -------------c------cccCCCCC-------ccCCCCC--------Cc------eeEEeecCCcc-------HHHH
Confidence 2 45533322 4543320 11 44555554321 3456
Q ss_pred HHHHhhhhhhhhhhhhccCcc--ccccCcccccccccccchhhHHHhh-cCHHHHHHHHh----hccCC-CCCcHHHHHH
Q 045994 349 VETVFHEFGHALQHMLTKQDE--SLVAGIRGIEWDAVELPSQFMENWC-YHRDTLMSIAK----HYQTG-ESLPEDVYLK 420 (574)
Q Consensus 349 v~tLfHE~GHalH~lls~t~~--~~~sgt~~~~~df~E~pS~l~E~~~-~~~~vL~~~~~----h~~t~-~~lp~~~~~~ 420 (574)
+....||+|||+-..=-...+ ..+. + +.++-+.|--|-|+|+.+ .++.+.+.+.. |+... +..+.+-+-.
T Consensus 260 L~g~iHE~GHAlYEqn~~~~l~gtPlg-~-g~smgiHESQSrF~En~VGRs~aFw~~~~~~~~~~~~~~~~~~s~dd~y~ 337 (497)
T COG2317 260 LFGTIHETGHALYEQNLDEALLGTPLG-E-GRSMGIHESQSRFWENQVGRSRAFWEAIYPLLRKHFPEQFDKYSLDDFYR 337 (497)
T ss_pred HHHHHHhhhhHHHHcCCCHHHcCCccc-C-CcccccccHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhcccCCHHHHHH
Confidence 778899999999865433322 1232 2 467889999999999987 34444444332 22100 2233332222
Q ss_pred HHH-H-hchhc--HH---HHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCCcc
Q 045994 421 LLA-A-RTFRA--GS---FSLRQLRFASVDLELHTNYVPGGSESVFDVDQRVSKTTQVLPPLPEDRFLCSFSHIFAGGYA 493 (574)
Q Consensus 421 l~~-~-~~~~~--~~---~~~~ql~~a~~D~~~H~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~Hl~~~~Y~ 493 (574)
... . +.+.+ +- ..+.-+..-.++..+-+. ..+..++-++|++-.++|.|+.+..+.....+--|-..|.+|
T Consensus 338 ~vn~v~~~lIRveADElTY~lHIilRyEiEk~li~G--~l~v~DlP~lWn~kme~yLGirp~~d~eG~LQDIHWs~GsfG 415 (497)
T COG2317 338 AVNRVEPSLIRVEADELTYPLHIILRYEIEKELISG--ELKVDDLPELWNDKMEEYLGIRPKNDAEGVLQDIHWSHGSFG 415 (497)
T ss_pred HHhcccCcceeeeccccceeeeeehhHHHHHHHHcC--CcchhhhHHHHHHHHHHHcCCCCCCccccccccccccCCCcC
Confidence 111 0 00111 00 012233334445544332 234568899999999999998654332223445566666674
Q ss_pred cchh-hHHHHHHHHHHHHHHHHHcC-CCC----chhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCCCCCchHHHHhC
Q 045994 494 AGYY-SYKWAEVLSADAFSAFEDAG-LND----SKAVQDTGRRFRETILAFGGGKPPLEVFVEFRGREPSPEPLLRHN 565 (574)
Q Consensus 494 a~YY-~Yl~a~~~A~~i~~~f~~~~-~~~----~~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr~p~~~~~~~~~ 565 (574)
|+ +|..+.++|+.+|....++- ..+ .+.......-++++|-+.|...+|.|++++..|...|++.|++++
T Consensus 416 --YFPsYtlG~v~AAQ~~~a~~~~~p~~d~~i~~gd~~~i~~WL~e~ih~~Gs~~~p~eLi~~atGE~lnp~y~i~yL 491 (497)
T COG2317 416 --YFPTYTLGNVYAAQLYAAMKKDIPDVDALIAKGDFSPIKNWLRENIHRHGSRYPPKELLKRATGEALNPEYFIDYL 491 (497)
T ss_pred --cCchhhhHHHHHHHHHHHHHhhcccHHHHHHcCCcHHHHHHHHHHHHHccCcCCcHHHHHHhhCCcCCHHHHHHHH
Confidence 77 99999999999997655421 100 001135667788899999999999999999999999999999976
No 20
>PF01401 Peptidase_M2: Angiotensin-converting enzyme This Prosite motif covers only the active site.; InterPro: IPR001548 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M2 (clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The catalytic residues and zinc ligands have been identified, the zinc ion being ligated to two His residues within the motif HEXXH, showing that the enzyme belongs to the E sub-group of metalloproteases []. Pepetidyl-dipeptidase A (angiotensin-converting enzyme) is a mammalian enzyme responsible for cleavage of dipeptides from the C-termini of proteins, notably converting angiotensin I to angiotensin II []. The enzyme exists in two differentially transcribed forms, the most common of which is from lung endothelium; this contains two homologous domains that have arisen by gene duplication []. The testis-specific form contains only the C-terminal domain, arising from a duplicated promoter region present in intron 12 of the gene []. Both enzymatic forms are membrane proteins that are anchored by means of a C-terminal transmembrane domain. Both domains of the endothelial enzyme are active, but have differing kinetic constants []. ]. A number of insect enzymes have been shown to be similar to peptidyl-dipeptidase A, these containing a single catalytic domain.; GO: 0008237 metallopeptidase activity, 0008241 peptidyl-dipeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YDM_A 3BKL_A 2C6N_B 1UZE_A 3BKK_A 2C6F_B 2IUX_A 2IUL_A 2XYD_B 3NXQ_B ....
Probab=99.24 E-value=1.5e-09 Score=119.87 Aligned_cols=472 Identities=17% Similarity=0.195 Sum_probs=255.3
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCChh----h--------hcCCCHHHHHHHHHHH--H----
Q 045994 19 VSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKK----E--------IEGLPATALGLAAQTA--L---- 80 (574)
Q Consensus 19 ~~L~~~~r~~~~~l~~~i~~l~~~f~~n~~~~~~~~~~~~~~~~----e--------L~g~p~~~~~~~~~~~--~---- 80 (574)
-+++++.++...+.+.+.++...++.+... .|...-++.. . -..+|++-.+.+.... +
T Consensus 43 TNITdeN~~~~~ea~~~~a~F~k~~~~~Ak----kFd~~~~~d~~lkRql~~L~~lG~AaL~~~k~~el~~i~s~M~~iY 118 (595)
T PF01401_consen 43 TNITDENQQLMAEASLEYAKFQKEYAKEAK----KFDWTKFKDDTLKRQLKKLSKLGPAALPPEKLEELNKILSEMESIY 118 (595)
T ss_dssp TS-SHHHHHHHHHHHHHHHHHHHHHHHHHT----TSHGGGGSSHHHHHHHHHHTS-GGGGSTHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcccCCCHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHh
Confidence 467777777777766666666555555422 1211111111 1 1345666666554331 1
Q ss_pred hcCCCCCCCCCCceEEeecCCcHHHHhhcCCCHHHHHHHHHHHhcccCCCCCCcHHHHHHHHHHHHHHHHHcCCCchHHH
Q 045994 81 SKGHENATAENGPWIITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNTPIIDRILKLRLEKAKLLGYKNYAEV 160 (574)
Q Consensus 81 ~~g~~~~~~~~g~~~~~~~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~~~~~n~~~l~~ll~lR~~~A~llGy~s~a~~ 160 (574)
..++. -..++ -.+.+ .|++..+|..+.|.+.++-+|.+|.+.... .....+.++|++-++-|+..||++..+|
T Consensus 119 st~kv--C~~~~-~cl~L-ePdl~~ima~Srd~~eL~~~W~~Wr~~vg~---~~r~~y~~~V~L~N~aA~~nG~~d~g~~ 191 (595)
T PF01401_consen 119 STAKV--CPYDG-KCLSL-EPDLEEIMATSRDYDELLYAWEGWRDAVGP---PMRPLYERYVELSNEAARLNGFKDTGEY 191 (595)
T ss_dssp HH-EE--EESSS-EEEET-TTHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTTSSSHHHH
T ss_pred ccccc--cCCCC-ccccc-hhhHHHHHhccCCHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 22221 01122 23333 468999999999999999999999875432 4678999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhccchHHHHHHHHHH--HHHhcCC---C--------CCCCCccccHHHHHHHHHH----
Q 045994 161 SMAMKMATVDKAFELLEKLQSASWDPAVQDMEDLKS--FSKSQGA---L--------EADKLDHWDIGFWSERLRE---- 223 (574)
Q Consensus 161 ~l~~~m~~pe~v~~fL~~l~~~~~p~~~~e~~~l~~--~k~~~~~---~--------~~~~l~pWD~~y~~~~~~~---- 223 (574)
-...-- . +.....++.|.+.++|..++ +...-+ +.+..|. + -.+.+..-|+.=....+..
T Consensus 192 Wr~~ye-~-~~~~~~~~~lw~~i~PLY~~-LHayVR~~L~~~Yg~~~v~~~gpIPAHLLGnmwaq~W~ni~~~~~P~p~~ 268 (595)
T PF01401_consen 192 WRSSYE-M-PNFEQELERLWQQIKPLYKQ-LHAYVRRKLREKYGDDVVPPDGPIPAHLLGNMWAQSWSNIYDLVLPYPDK 268 (595)
T ss_dssp HHGGG--C-TTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTTTS-TTS-EEGGGSSSTTSS-GGGGHHHH-STTTS
T ss_pred HHHHhc-c-ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCcccCCCCCCccHHHHHHHHHHHHhhhhccccCCCCC
Confidence 644321 2 35678888999998886544 322211 2222221 0 0122333333211122211
Q ss_pred HhcCCCchhccCCCChhhHHHHHHHHHHHHhc-ceeeeCCCCCCccccceeEEEEEcCCCCceeEeeccCCCCCCC-CCC
Q 045994 224 SKYEINEEELRPYFSLPKVMDGLFNLAKTLFG-IDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDPYSRPSE-KKG 301 (574)
Q Consensus 224 ~~~~~d~~~l~~yf~~~~vl~gl~~~~~~lfg-i~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylDl~~R~gK-k~~ 301 (574)
..+++.++-++.-+ +...|+..+++.|. +-|.+.+ .+-|..++. .||.- ..-
T Consensus 269 ~~~dvt~~l~~q~~----t~~~mf~~ae~ff~SlGl~~mp--~~FW~~S~~--------------------~kp~d~r~~ 322 (595)
T PF01401_consen 269 PSLDVTEELVKQGY----TAKKMFKTAEEFFTSLGLPPMP--PTFWEKSMF--------------------EKPTDGRDV 322 (595)
T ss_dssp --S-THHHHHHTT------HHHHHHHHHHHHHHTTS------HHHHHHSB---------------------S--SSSS--
T ss_pred CCCCcHHHHHHccc----cHHHHHHHHHHHHHhCCCCcCC--HHHHHHHHh--------------------cCCCCCCCC
Confidence 11222222122212 34567777776542 2244443 245644331 12210 000
Q ss_pred Cccccc--cccccccccCCCCccccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccC-ccccccCcccc
Q 045994 302 GAWMDE--VVSRSRVLSRNGTTSRLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQ-DESLVAGIRGI 378 (574)
Q Consensus 302 ga~~~~--~~~~~~~~~~~g~~~~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t-~~~~~sgt~~~ 378 (574)
-|+.+. ++ ++. -+-+..|.- .+.++..|..|||||..+.+.-+. .+..-.| .
T Consensus 323 ~Chasawdf~--------~~~----d~Rik~Ct~----------v~~~df~t~hhemghi~Y~~~y~~qp~~fr~g---a 377 (595)
T PF01401_consen 323 VCHASAWDFY--------NGD----DFRIKMCTE----------VTMEDFLTAHHEMGHIQYYMQYKDQPVLFREG---A 377 (595)
T ss_dssp --S-EEEEES--------SSS----EEEEE--------------SSHHHHHHHHHHHHHHHHHHHTTTS-GGGSS----S
T ss_pred CcCcchhhcc--------CCC----ccceeeccc----------CCHHHHHHHHHHHHHHHHHHHHhhCChhhhcC---C
Confidence 111111 11 111 112234542 389999999999999998766432 2222223 2
Q ss_pred cccccccchhhHHHhhcCHHHHHHHHhhccCCCCCcHHHHHHHHHHhchhcHHHH-HHHHHHHHHHHHhhccCC-CCCCC
Q 045994 379 EWDAVELPSQFMENWCYHRDTLMSIAKHYQTGESLPEDVYLKLLAARTFRAGSFS-LRQLRFASVDLELHTNYV-PGGSE 456 (574)
Q Consensus 379 ~~df~E~pS~l~E~~~~~~~vL~~~~~h~~t~~~lp~~~~~~l~~~~~~~~~~~~-~~ql~~a~~D~~~H~~~~-~~~~~ 456 (574)
-.-|-|.-+.++-.-+..|.-|..+.-- .+...=++..|+.|. ..|+.. ....+.-++|+.=..... ..+..
T Consensus 378 n~gfhEAigd~ials~~tp~hL~~~gLl-~~~~~~~~~~in~L~-----~~AL~ki~~lPf~~~~d~wRw~vf~g~i~~~ 451 (595)
T PF01401_consen 378 NPGFHEAIGDTIALSVSTPKHLKRIGLL-DNVTDDEESDINFLL-----KQALDKIAFLPFGYLMDKWRWDVFSGSIPPD 451 (595)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHHHTTSS-STTTTSHHHHHHHHH-----HHHHHHCCHHHHHHHHHHHHHHHHTTSS-CC
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHcCCC-CCCCcchHHHHHHHH-----HHhhhHHHhccHHHHHHHHHHHHhcCCCCHH
Confidence 2468899999999999999888877532 111111344455443 223322 223444566665444322 12346
Q ss_pred CHHHHHHHHHHhcCCCC-CCCC---CCCCCcccccccCCcccchhhHHHHHHHHHHHHHH-HHHcCCCCc------hhhH
Q 045994 457 SVFDVDQRVSKTTQVLP-PLPE---DRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSA-FEDAGLNDS------KAVQ 525 (574)
Q Consensus 457 ~~~~~~~~l~~~~~~~~-~~~~---~~~~~~f~Hl~~~~Y~a~YY~Yl~a~~~A~~i~~~-f~~~~~~~~------~~~~ 525 (574)
+.++-|.+++++|.|+. +++. +.-+....|+.. ...|..|-.|.++--.+++. ....|...| --++
T Consensus 452 ~~n~~wW~lr~~yqGi~pP~~r~~~~fD~~ak~hi~~---~~py~ryfls~ilqFQ~~~~lC~~ag~~~pLh~Cdiy~s~ 528 (595)
T PF01401_consen 452 QYNEAWWELREKYQGIVPPVERSESDFDPGAKYHIPA---NTPYIRYFLSTILQFQFYKALCEAAGHEGPLHRCDIYGSK 528 (595)
T ss_dssp GHHHHHHHHHHHHHSEE-SS-EETTS-GGGGSHHHHT---T--SHHHHHHHHHHHHHHHHHHHHTTTTSSGGG---TT-H
T ss_pred HHHHHHHHHHHHcCCccCCCCCCcccCCcchhhhhcc---ccccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccch
Confidence 78999999999999974 3321 112345568763 34588999999998777764 344332111 1258
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHhhC-CCCCchHHHHhC
Q 045994 526 DTGRRFRETILAFGGGKPPLEVFVEFRG-REPSPEPLLRHN 565 (574)
Q Consensus 526 ~~g~~yr~~~L~~Ggs~~p~ell~~flG-r~p~~~~~~~~~ 565 (574)
++|++++ .+|+.|+|++..+.|+.++| ++.+.+++++.+
T Consensus 529 ~aG~~l~-~ml~~G~S~~W~~~l~~~tg~~~~~a~~ll~YF 568 (595)
T PF01401_consen 529 EAGRKLK-KMLSLGSSKPWPEALEELTGEREMSASALLEYF 568 (595)
T ss_dssp HHHHHHH-HHHTTTTSS-HHHHHHHHHSSSS--SHHHHHHH
T ss_pred hhHHHHH-HHhcCCCCCCHHHHHHHHhCCCCcChHHHHHHH
Confidence 9999998 79999999999999999999 589999998764
No 21
>KOG3690 consensus Angiotensin I-converting enzymes - M2 family peptidases [Amino acid transport and metabolism]
Probab=98.91 E-value=1.7e-05 Score=84.97 Aligned_cols=445 Identities=16% Similarity=0.134 Sum_probs=243.2
Q ss_pred hhhhcCCCHHHHHHHHHHHH--hcCCCCC--CCCCCce-EEeecCCcHHHHhhcCCCHHHHHHHHHHHhcccCCCCCCcH
Q 045994 61 KKEIEGLPATALGLAAQTAL--SKGHENA--TAENGPW-IITLDAPSFMSVMQHAKNRVLREEVYRAYVSRASSGDLDNT 135 (574)
Q Consensus 61 ~~eL~g~p~~~~~~~~~~~~--~~g~~~~--~~~~g~~-~~~~~~~~~~~vl~~~~d~~~Rk~~~~a~~~~~~~~~~~n~ 135 (574)
.-..+++|++..+++..... ......+ =..+++- .--+-.|.+..+|.++.|-+-+.-.|.+|..+... .-.
T Consensus 111 ~lg~saL~~~d~~~~~~ll~~m~~~y~~~~vC~y~~p~~~~L~l~P~l~~i~~~Srd~~eL~~~W~~wr~~~g~---~~r 187 (646)
T KOG3690|consen 111 QLGMSALSPDDLKRYNQLLSSMSTNYNTATVCAYDQPSACCLLLEPQLQSIMANSRDYDELQWYWVEWRRKIGK---AMR 187 (646)
T ss_pred hhccccCCHHHHHHHHHHHHHHHhhcCCceeeCCCCCCCcceecCccHHHHHhccCCHHHHHHHHHHHHHHhhh---hhh
Confidence 33457889988888876542 2221111 0112211 11123568899999999999999999999887653 345
Q ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHhhcCCHHHHHHHHHHHHhhccchHHHHHHHHHHH--HHhcCCCCCCCCcccc
Q 045994 136 PIIDRILKLRLEKAKLLGYKNYAEVSMAMKMATVDKAFELLEKLQSASWDPAVQDMEDLKSF--SKSQGALEADKLDHWD 213 (574)
Q Consensus 136 ~~l~~ll~lR~~~A~llGy~s~a~~~l~~~m~~pe~v~~fL~~l~~~~~p~~~~e~~~l~~~--k~~~~~~~~~~l~pWD 213 (574)
..+.+.+.+-++.|++=||.++.+|=...-. ++-+...-|+.+.+.++|.... +...-+. .+-.|........|--
T Consensus 188 ~~y~~yv~L~~e~A~lNg~~~~gdyW~~~yE-~~~~~~~~ld~i~~ei~PlY~~-LHAYvRr~L~~~Ygp~~i~~~gpiP 265 (646)
T KOG3690|consen 188 QSYEEYVDLSNEAAQLNGYVNGGDYWRLAYE-TPGDFEQDLDAIFEEIRPLYRQ-LHAYVRRKLRGAYGPDGISRDGPIP 265 (646)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcccCCCCCCcC
Confidence 6888999999999999999999999543211 4446778889999998885443 3332211 1222211122222222
Q ss_pred HHHHHHHHHH---HhcCCCc--hhccCCCChh-------hHHHHHHHHHHHHhcc-eeeeCCCCCCccccceeEEEEEcC
Q 045994 214 IGFWSERLRE---SKYEINE--EELRPYFSLP-------KVMDGLFNLAKTLFGI-DIEPADGLAPVWNNDVRFYCVKDS 280 (574)
Q Consensus 214 ~~y~~~~~~~---~~~~~d~--~~l~~yf~~~-------~vl~gl~~~~~~lfgi-~~~~~~~~~~~w~~dV~~~~v~~~ 280 (574)
..-+.++..+ ..|++.. .+ ++.-++. ...+.||..+.+.|-- -|-.++ .+-|...+.
T Consensus 266 ahLlgnm~gq~Ws~~y~~~~P~pe-~~~~dvt~~m~~qg~~~qkmF~~a~efF~SlGl~~lp--~sfw~~s~~------- 335 (646)
T KOG3690|consen 266 AHLLGNMWGQDWSNHYDLTTPFPE-RPLIDVTMEMVKQGYTVQKMFKLAAEFFTSLGLPALP--PSFWTNSIL------- 335 (646)
T ss_pred HHHHhhhhccchHhhhhcccCCCC-CCCCchHHHHHHccccHHHHHHHHHHHHHHcCCCcCC--hHHHhHHHh-------
Confidence 2111122111 0111110 00 0000000 0124555555554421 011111 234443332
Q ss_pred CCCceeEeeccCCCCCCCCCCCccccccccccccccCCCCccccCeE-EEEccCCCCCCCCCCCCChhhHHHHhhhhhhh
Q 045994 281 SGSPIAYFYFDPYSRPSEKKGGAWMDEVVSRSRVLSRNGTTSRLPVA-HMVCNQTPPVGDKPSLMTFREVETVFHEFGHA 359 (574)
Q Consensus 281 ~~~~lG~iylDl~~R~gKk~~ga~~~~~~~~~~~~~~~g~~~~~P~~-~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHa 359 (574)
.|++ -.+++-|..-.-+ -++.|=+ +-.| +.++..+..+..|||||.
T Consensus 336 -------------~~p~-d~~~v~C~~sAwd---------f~~~~Dfrik~C----------t~vd~~~f~~~Hhem~hi 382 (646)
T KOG3690|consen 336 -------------TRPD-DRDMVVCHASAWD---------FYAGPDFRIKYC----------TKVDEEDFEQAHHEMGHI 382 (646)
T ss_pred -------------cCCC-CCCceeechhhhc---------cccCCCceeeec----------CcCCHHHHHHHHHHHHHH
Confidence 2222 1222222110000 0111111 2223 346899999999999998
Q ss_pred hhhhhccCccccccCcccccccccccchhhHHHhhcCHHHHHHHHhhccCCCCCc-HHHHHHHHHHhchhcHHHH-HHHH
Q 045994 360 LQHMLTKQDESLVAGIRGIEWDAVELPSQFMENWCYHRDTLMSIAKHYQTGESLP-EDVYLKLLAARTFRAGSFS-LRQL 437 (574)
Q Consensus 360 lH~lls~t~~~~~sgt~~~~~df~E~pS~l~E~~~~~~~vL~~~~~h~~t~~~lp-~~~~~~l~~~~~~~~~~~~-~~ql 437 (574)
--.+.-+. .+.+--. ++..-|.|.-...+-+-+..|.-|.++.-- +...-.. +..|+.|- -.|+.. ....
T Consensus 383 QY~l~y~~-qP~llre-~anPgFheAIgd~~als~stPrhL~slgLL-~~~~~~d~~~~IN~L~-----k~aL~~v~~LP 454 (646)
T KOG3690|consen 383 QYYLQYKQ-QPFLLRE-GANPGFHEAIGDAFALSVSTPRHLHSLGLL-SEDLDEDDEVRINRLF-----KMALDKVAFLP 454 (646)
T ss_pred HHHHHHHh-ccHHhhC-CCCCcHHHHHHHHHHHhcCCHHHHHHhccc-ccccccchHHHHHHHH-----HHHHHHHhhhh
Confidence 76666543 2211110 122468888888888888999888876421 1111111 34455443 223322 2245
Q ss_pred HHHHHHHHhhccCC-CCCCCCHHHHHHHHHHhcCCCC-CCCCCC---CCCcccccccCCcccchhhHHHHHHHHHHHHHH
Q 045994 438 RFASVDLELHTNYV-PGGSESVFDVDQRVSKTTQVLP-PLPEDR---FLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSA 512 (574)
Q Consensus 438 ~~a~~D~~~H~~~~-~~~~~~~~~~~~~l~~~~~~~~-~~~~~~---~~~~f~Hl~~~~Y~a~YY~Yl~a~~~A~~i~~~ 512 (574)
+.-..|..-+...+ .....+.++-|.+|+.+|.|.. +.+-+. -+...-|+ ...+ .|=.|..|.|+--.++..
T Consensus 455 f~y~~DkwR~~Vf~G~i~k~~~N~~~W~lr~ky~Gv~~P~~r~~~dfD~~akf~~-~~d~--~~~ryf~s~vlqFQf~ka 531 (646)
T KOG3690|consen 455 FTYALDKWRYEVFDGEIPKDQYNCAYWELRNKYEGVRPPVPRTNKDFDPPAKFHI-QVDV--SYTRYFLSTVLQFQFLKA 531 (646)
T ss_pred hhhhhhhhHHHHhcCCCCcchhhHHHHHHHHHhcCcCCCCcCccccCCchhhhcc-Ccch--HHHHHHHHHHHHHHHHHH
Confidence 55566766554322 2234568999999999999864 333221 12222343 2233 366777888877666544
Q ss_pred H-HHcCCCC----------c--hhhHHHHHHHHHHHHcCCCCCCHHHHHHHhhCC-CCCchHHHHhC
Q 045994 513 F-EDAGLND----------S--KAVQDTGRRFRETILAFGGGKPPLEVFVEFRGR-EPSPEPLLRHN 565 (574)
Q Consensus 513 f-~~~~~~~----------~--~~~~~~g~~yr~~~L~~Ggs~~p~ell~~flGr-~p~~~~~~~~~ 565 (574)
| ...|... + -.++++|+++| ++++.|.|++..|.|+.++|. +.+..+++..+
T Consensus 532 lC~~agq~~pg~pr~pLh~CDi~~sk~aG~kL~-~~M~lG~S~~W~evLE~~tGe~els~~~LLeYF 597 (646)
T KOG3690|consen 532 LCQAAGQYGPGDPRKPLHNCDIYDSKEAGEKLR-TMMSLGSSRHWREVLEEITGEGELSGRALLEYF 597 (646)
T ss_pred HHHHhcccCCCCCCCCchhccccCCHHHHHHHH-HHHHccCCccHHHHHHHHcCCCcCChHHHHHHH
Confidence 3 3322211 1 13589999999 799999999999999999996 68888888754
No 22
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=91.60 E-value=0.14 Score=49.62 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=24.2
Q ss_pred ccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhh
Q 045994 323 RLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQ 361 (574)
Q Consensus 323 ~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH 361 (574)
+.|+++++.|-+ ...+..||+||+||++=
T Consensus 57 ~~~~I~iN~n~~----------~~r~rFtlAHELGH~ll 85 (213)
T COG2856 57 EKPVIYINANNS----------LERKRFTLAHELGHALL 85 (213)
T ss_pred cCceEEEeCCCC----------HHHHHHHHHHHHhHHHh
Confidence 459999987763 67889999999999964
No 23
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=88.80 E-value=3 Score=39.47 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhcceeeeCCCCCCccccceeE
Q 045994 242 VMDGLFNLAKTLFGIDIEPADGLAPVWNNDVRF 274 (574)
Q Consensus 242 vl~gl~~~~~~lfgi~~~~~~~~~~~w~~dV~~ 274 (574)
.+...+...+++-+|+|+++... ...++++
T Consensus 38 ~i~~A~~~w~~~~~l~F~e~~~~---~~adI~i 67 (186)
T cd04277 38 AARDALEAWEDVADIDFVEVSDN---SGADIRF 67 (186)
T ss_pred HHHHHHHHHHhhcCceeEECCCC---CcceEEE
Confidence 34444456667789999997542 3456655
No 24
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=87.29 E-value=0.52 Score=40.53 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=24.6
Q ss_pred cCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhc
Q 045994 324 LPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLT 365 (574)
Q Consensus 324 ~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls 365 (574)
.++++++.|.+ ......|++||+||.+.+--.
T Consensus 28 ~~~I~in~~~~----------~~~~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 28 NPIIFINSNLS----------PERQRFTLAHELGHILLHHGD 59 (122)
T ss_dssp TTEEEEESSS-----------HHHHHHHHHHHHHHHHHHH-H
T ss_pred CCEEEECCCCC----------HHHHHHHHHHHHHHHHhhhcc
Confidence 67888887742 677889999999999886554
No 25
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=81.76 E-value=0.74 Score=44.87 Aligned_cols=19 Identities=42% Similarity=0.628 Sum_probs=16.2
Q ss_pred hhHHHHhhhhhhhhhhhhc
Q 045994 347 REVETVFHEFGHALQHMLT 365 (574)
Q Consensus 347 ~~v~tLfHE~GHalH~lls 365 (574)
.-+.||+||+|||+-+.+.
T Consensus 91 ~~~~~l~HE~GHAlI~~~~ 109 (220)
T PF14247_consen 91 NVLFTLYHELGHALIDDLD 109 (220)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4568999999999998874
No 26
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=81.31 E-value=0.72 Score=42.02 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=12.1
Q ss_pred hhHHHHhhhhhhhhh
Q 045994 347 REVETVFHEFGHALQ 361 (574)
Q Consensus 347 ~~v~tLfHE~GHalH 361 (574)
+-..|+.||+||+|=
T Consensus 104 ~~~~v~~HEiGHaLG 118 (154)
T PF00413_consen 104 DLQSVAIHEIGHALG 118 (154)
T ss_dssp EHHHHHHHHHHHHTT
T ss_pred hhhhhhhhccccccC
Confidence 445789999999963
No 27
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=74.90 E-value=1.2 Score=40.91 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=13.5
Q ss_pred ChhhHHHHhhhhhhhhh
Q 045994 345 TFREVETVFHEFGHALQ 361 (574)
Q Consensus 345 ~~~~v~tLfHE~GHalH 361 (574)
..+-..|+.||+||||=
T Consensus 104 ~~~~~~~~~HEiGHaLG 120 (157)
T cd04278 104 GTDLFSVAAHEIGHALG 120 (157)
T ss_pred cchHHHHHHHHhccccc
Confidence 34567899999999964
No 28
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=74.15 E-value=1.5 Score=40.24 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=12.2
Q ss_pred hhHHHHhhhhhhhhh
Q 045994 347 REVETVFHEFGHALQ 361 (574)
Q Consensus 347 ~~v~tLfHE~GHalH 361 (574)
+-..|+.|||||+|=
T Consensus 103 ~~~~~~~HEiGHaLG 117 (156)
T cd04279 103 NLQAIALHELGHALG 117 (156)
T ss_pred HHHHHHHHHhhhhhc
Confidence 456789999999963
No 29
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=73.77 E-value=1.9 Score=36.65 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=14.2
Q ss_pred ChhhHHHHhhhhhhhhh
Q 045994 345 TFREVETVFHEFGHALQ 361 (574)
Q Consensus 345 ~~~~v~tLfHE~GHalH 361 (574)
-..-+.||+|||-|+|+
T Consensus 73 y~qvlktllhefrh~mQ 89 (126)
T PF13058_consen 73 YEQVLKTLLHEFRHAMQ 89 (126)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34457999999999998
No 30
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=73.75 E-value=1.6 Score=40.25 Aligned_cols=15 Identities=53% Similarity=0.647 Sum_probs=12.5
Q ss_pred hhHHHHhhhhhhhhh
Q 045994 347 REVETVFHEFGHALQ 361 (574)
Q Consensus 347 ~~v~tLfHE~GHalH 361 (574)
.-..|+.||+||||=
T Consensus 93 ~~~~~~~HEiGHaLG 107 (165)
T cd04268 93 RLRNTAEHELGHALG 107 (165)
T ss_pred HHHHHHHHHHHHHhc
Confidence 457899999999963
No 31
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=71.99 E-value=2.2 Score=41.07 Aligned_cols=24 Identities=46% Similarity=0.641 Sum_probs=19.4
Q ss_pred hhhHHHHhhhhhhhhhhhhccCcc
Q 045994 346 FREVETVFHEFGHALQHMLTKQDE 369 (574)
Q Consensus 346 ~~~v~tLfHE~GHalH~lls~t~~ 369 (574)
..-+.|++||+||++=.+++..+.
T Consensus 20 ~~~l~t~~HE~gHal~a~l~G~~v 43 (200)
T PF13398_consen 20 FRLLVTFVHELGHALAALLTGGRV 43 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 455679999999999999886543
No 32
>PF14891 Peptidase_M91: Effector protein
Probab=71.65 E-value=2.1 Score=40.22 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=18.3
Q ss_pred ChhhHHHHhhhhhhhhhhhhccC
Q 045994 345 TFREVETVFHEFGHALQHMLTKQ 367 (574)
Q Consensus 345 ~~~~v~tLfHE~GHalH~lls~t 367 (574)
...-+..|+|||.||.|.+-+..
T Consensus 100 ~~~p~v~L~HEL~HA~~~~~Gt~ 122 (174)
T PF14891_consen 100 PRPPFVVLYHELIHAYDYMNGTM 122 (174)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCC
Confidence 34557899999999999877654
No 33
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=68.36 E-value=2.4 Score=40.40 Aligned_cols=16 Identities=44% Similarity=0.661 Sum_probs=14.5
Q ss_pred ChhhHHHHhhhhhhhh
Q 045994 345 TFREVETVFHEFGHAL 360 (574)
Q Consensus 345 ~~~~v~tLfHE~GHal 360 (574)
+...+.|++||+||.|
T Consensus 139 ~~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 139 TYNGAITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred CCceehhhHHhHHHhc
Confidence 6788999999999985
No 34
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=68.04 E-value=8.8 Score=36.27 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=11.4
Q ss_pred CCceeEeeccCCCC
Q 045994 282 GSPIAYFYFDPYSR 295 (574)
Q Consensus 282 ~~~lG~iylDl~~R 295 (574)
...||....|+|++
T Consensus 71 ~~vl~vt~~DLy~~ 84 (179)
T PRK13267 71 DKNIGITDCDLYYR 84 (179)
T ss_pred ceEEEEEccccCCC
Confidence 45788889999984
No 35
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=67.48 E-value=2.3 Score=38.15 Aligned_cols=11 Identities=55% Similarity=0.836 Sum_probs=9.8
Q ss_pred HHHhhhhhhhh
Q 045994 350 ETVFHEFGHAL 360 (574)
Q Consensus 350 ~tLfHE~GHal 360 (574)
.|+.||+||||
T Consensus 88 ~~~~HEigHaL 98 (140)
T smart00235 88 GVAAHELGHAL 98 (140)
T ss_pred ccHHHHHHHHh
Confidence 38999999997
No 36
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=66.73 E-value=2.6 Score=36.81 Aligned_cols=13 Identities=54% Similarity=0.833 Sum_probs=11.1
Q ss_pred hHHHHhhhhhhhh
Q 045994 348 EVETVFHEFGHAL 360 (574)
Q Consensus 348 ~v~tLfHE~GHal 360 (574)
.+.|+.||+||.|
T Consensus 107 ~~~~~~HEiGH~l 119 (124)
T PF13582_consen 107 GVDTFAHEIGHNL 119 (124)
T ss_dssp STTHHHHHHHHHT
T ss_pred cceEeeehhhHhc
Confidence 3489999999986
No 37
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=65.55 E-value=7.7 Score=37.51 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=12.1
Q ss_pred hhhHHHHhhhhhhhh
Q 045994 346 FREVETVFHEFGHAL 360 (574)
Q Consensus 346 ~~~v~tLfHE~GHal 360 (574)
...+.|+.||+||++
T Consensus 135 ~~~~~~~aHEiGH~l 149 (206)
T PF13583_consen 135 ANGYQTFAHEIGHNL 149 (206)
T ss_pred cccchHHHHHHHHHh
Confidence 345678999999986
No 38
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=65.41 E-value=3.3 Score=38.84 Aligned_cols=13 Identities=46% Similarity=0.853 Sum_probs=12.1
Q ss_pred hHHHHhhhhhhhh
Q 045994 348 EVETVFHEFGHAL 360 (574)
Q Consensus 348 ~v~tLfHE~GHal 360 (574)
++.+++||+||.+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 8999999999985
No 39
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=64.12 E-value=3.1 Score=39.94 Aligned_cols=14 Identities=57% Similarity=0.845 Sum_probs=11.6
Q ss_pred hHHHHhhhhhhhhh
Q 045994 348 EVETVFHEFGHALQ 361 (574)
Q Consensus 348 ~v~tLfHE~GHalH 361 (574)
...|+.|||||||=
T Consensus 92 ~~~~i~HElgHaLG 105 (198)
T cd04327 92 FSRVVLHEFGHALG 105 (198)
T ss_pred HHHHHHHHHHHHhc
Confidence 45699999999974
No 40
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=61.47 E-value=3.6 Score=37.83 Aligned_cols=23 Identities=4% Similarity=0.029 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHhcceeeeCC
Q 045994 240 PKVMDGLFNLAKTLFGIDIEPAD 262 (574)
Q Consensus 240 ~~vl~gl~~~~~~lfgi~~~~~~ 262 (574)
..++...+.+.+...+++|+++.
T Consensus 24 ~~~v~~a~~~w~~~~~i~f~~~~ 46 (167)
T cd00203 24 QSLILIAMQIWRDYLNIRFVLVG 46 (167)
T ss_pred HHHHHHHHHHHHhhhCceEEEec
Confidence 34455666777777899998864
No 41
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=59.68 E-value=4.4 Score=37.32 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=13.2
Q ss_pred ChhhHHHHhhhhhhhhh
Q 045994 345 TFREVETVFHEFGHALQ 361 (574)
Q Consensus 345 ~~~~v~tLfHE~GHalH 361 (574)
..+.-.||.||+||-|-
T Consensus 66 ~~~~g~TltHEvGH~LG 82 (154)
T PF05572_consen 66 QYNFGKTLTHEVGHWLG 82 (154)
T ss_dssp TS-SSHHHHHHHHHHTT
T ss_pred ccccccchhhhhhhhhc
Confidence 45567999999999865
No 42
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=57.56 E-value=5.1 Score=40.90 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=17.8
Q ss_pred ChhhHHHHhhhhhhhhhhhhcc
Q 045994 345 TFREVETVFHEFGHALQHMLTK 366 (574)
Q Consensus 345 ~~~~v~tLfHE~GHalH~lls~ 366 (574)
.+...-+|+||+||.++.++.-
T Consensus 167 ~~a~ayVlAHEyGHHVQ~l~Gi 188 (292)
T PF04228_consen 167 DFAQAYVLAHEYGHHVQNLLGI 188 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4556668999999999999863
No 43
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=53.63 E-value=5.7 Score=38.38 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=10.4
Q ss_pred HHHhhhhhhhhh
Q 045994 350 ETVFHEFGHALQ 361 (574)
Q Consensus 350 ~tLfHE~GHalH 361 (574)
.++.||+||+|=
T Consensus 135 hvi~HEiGH~IG 146 (211)
T PF12388_consen 135 HVITHEIGHCIG 146 (211)
T ss_pred HHHHHHhhhhcc
Confidence 379999999985
No 44
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=52.32 E-value=6.1 Score=37.31 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=11.0
Q ss_pred HHHHhhhhhhhhh
Q 045994 349 VETVFHEFGHALQ 361 (574)
Q Consensus 349 v~tLfHE~GHalH 361 (574)
+-|..|||||||=
T Consensus 75 ~g~v~HE~~HalG 87 (180)
T cd04280 75 LGTIVHELMHALG 87 (180)
T ss_pred CchhHHHHHHHhc
Confidence 5789999999964
No 45
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=50.19 E-value=7.9 Score=37.74 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=13.9
Q ss_pred ChhhHHHHhhhhhhhh
Q 045994 345 TFREVETVFHEFGHAL 360 (574)
Q Consensus 345 ~~~~v~tLfHE~GHal 360 (574)
++..+.|++||+||.|
T Consensus 142 ~~~~~~~~AHElGH~l 157 (220)
T cd04272 142 SYYGVYTMTHELAHLL 157 (220)
T ss_pred CcccHHHHHHHHHHHh
Confidence 4567999999999997
No 46
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=50.03 E-value=5.2 Score=39.40 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.1
Q ss_pred hhHHHHhhhhhhhh
Q 045994 347 REVETVFHEFGHAL 360 (574)
Q Consensus 347 ~~v~tLfHE~GHal 360 (574)
..+.|++||+||.|
T Consensus 144 ~~~~t~AHElGHnL 157 (228)
T cd04271 144 NEWQVFAHEIGHTF 157 (228)
T ss_pred ccceehhhhhhhhc
Confidence 45689999999997
No 47
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=49.44 E-value=7.9 Score=38.49 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=10.9
Q ss_pred hHHHHhhhhhhhh
Q 045994 348 EVETVFHEFGHAL 360 (574)
Q Consensus 348 ~v~tLfHE~GHal 360 (574)
-..|++||+||.+
T Consensus 167 ~a~t~AHElGHnl 179 (244)
T cd04270 167 SDLVTAHELGHNF 179 (244)
T ss_pred HHHHHHHHHHHhc
Confidence 3489999999985
No 48
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=48.68 E-value=9.7 Score=33.58 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.8
Q ss_pred ChhhHHHHhhhhhhhhh
Q 045994 345 TFREVETVFHEFGHALQ 361 (574)
Q Consensus 345 ~~~~v~tLfHE~GHalH 361 (574)
.++.+..-.||+||.|=
T Consensus 74 gy~~~RIaaHE~GHiLG 90 (132)
T PF02031_consen 74 GYNSTRIAAHELGHILG 90 (132)
T ss_dssp HS-HHHHHHHHHHHHHT
T ss_pred CCccceeeeehhccccC
Confidence 67788899999999864
No 49
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=48.26 E-value=8.2 Score=36.58 Aligned_cols=13 Identities=38% Similarity=0.411 Sum_probs=10.9
Q ss_pred HHHHhhhhhhhhh
Q 045994 349 VETVFHEFGHALQ 361 (574)
Q Consensus 349 v~tLfHE~GHalH 361 (574)
+-|..|||||||=
T Consensus 78 ~G~i~HEl~HaLG 90 (182)
T cd04283 78 KGIIQHELLHALG 90 (182)
T ss_pred cchHHHHHHHHhC
Confidence 4589999999974
No 50
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=47.18 E-value=15 Score=35.71 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=17.0
Q ss_pred ChhhHHHHhhhhhhhhhhhh
Q 045994 345 TFREVETVFHEFGHALQHML 364 (574)
Q Consensus 345 ~~~~v~tLfHE~GHalH~ll 364 (574)
|...|-+=+||.|||+++--
T Consensus 86 SiaAvaVAAHEvGHAiQ~a~ 105 (222)
T PF04298_consen 86 SIAAVAVAAHEVGHAIQHAE 105 (222)
T ss_pred CHHHHHHHHHHHhHHHhccc
Confidence 77888899999999998643
No 51
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=46.89 E-value=10 Score=35.98 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=15.1
Q ss_pred HHHHhhhhhhhhhhhhccCccc
Q 045994 349 VETVFHEFGHALQHMLTKQDES 370 (574)
Q Consensus 349 v~tLfHE~GHalH~lls~t~~~ 370 (574)
+..++||+||++=......+..
T Consensus 8 i~i~~HE~gH~~~a~~~G~~~~ 29 (192)
T PF02163_consen 8 ISIVLHELGHALAARLYGDKVP 29 (192)
T ss_dssp HHHHHHHHHHHHHHHTTT--B-
T ss_pred cccccccccccccccccccccc
Confidence 4678999999988777655443
No 52
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=46.88 E-value=9.6 Score=36.36 Aligned_cols=14 Identities=57% Similarity=0.952 Sum_probs=11.7
Q ss_pred hHHHHhhhhhhhhh
Q 045994 348 EVETVFHEFGHALQ 361 (574)
Q Consensus 348 ~v~tLfHE~GHalH 361 (574)
.+.|..|||||||=
T Consensus 79 ~~~~i~HEl~HaLG 92 (191)
T PF01400_consen 79 SVGTILHELGHALG 92 (191)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHh
Confidence 46689999999974
No 53
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=46.11 E-value=8 Score=36.69 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=13.3
Q ss_pred ChhhHHHHhhhhhhhh
Q 045994 345 TFREVETVFHEFGHAL 360 (574)
Q Consensus 345 ~~~~v~tLfHE~GHal 360 (574)
......|++||+||.+
T Consensus 130 ~~~~~~~~aHElGH~l 145 (192)
T cd04267 130 TLLTALTMAHELGHNL 145 (192)
T ss_pred ceeehhhhhhhHHhhc
Confidence 3566789999999997
No 54
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=45.55 E-value=12 Score=39.24 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=26.8
Q ss_pred hhHHHHhhhhhhhhhhhhccCccccccCc-ccccccccccchhhHHHhhcC
Q 045994 347 REVETVFHEFGHALQHMLTKQDESLVAGI-RGIEWDAVELPSQFMENWCYH 396 (574)
Q Consensus 347 ~~v~tLfHE~GHalH~lls~t~~~~~sgt-~~~~~df~E~pS~l~E~~~~~ 396 (574)
.-+.||+|||=|.+|..-.... .|. ....+=+=|.-|+++|.++..
T Consensus 138 ~~~sTlAHEfQHmInfy~~~v~----~g~~~~~dtWLnE~lS~~aEdl~s~ 184 (366)
T PF10460_consen 138 TVYSTLAHEFQHMINFYQRGVL----HGKQYAMDTWLNEMLSMSAEDLYSS 184 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----cCCCcccccHHHHHHHHHHHHHHhc
Confidence 3579999999999996443211 111 011222346677777776543
No 55
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=43.21 E-value=6 Score=40.38 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=11.7
Q ss_pred hHHHHhhhhhhhhh
Q 045994 348 EVETVFHEFGHALQ 361 (574)
Q Consensus 348 ~v~tLfHE~GHalH 361 (574)
.+-|+.|||||+|-
T Consensus 165 ~igv~~HE~gH~lG 178 (286)
T TIGR03296 165 GVGVIAHELGHDLG 178 (286)
T ss_pred ceeeeehhhhcccC
Confidence 47899999999763
No 56
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=43.16 E-value=11 Score=36.35 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=10.9
Q ss_pred HHHHhhhhhhhhh
Q 045994 349 VETVFHEFGHALQ 361 (574)
Q Consensus 349 v~tLfHE~GHalH 361 (574)
+-|+.||+||||=
T Consensus 88 ~Gti~HEl~HaLG 100 (200)
T cd04281 88 FGIVVHELGHVIG 100 (200)
T ss_pred CchHHHHHHHHhc
Confidence 4589999999974
No 57
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=43.08 E-value=12 Score=35.36 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=15.2
Q ss_pred HHHHhhhhhhhhhhhhccCc
Q 045994 349 VETVFHEFGHALQHMLTKQD 368 (574)
Q Consensus 349 v~tLfHE~GHalH~lls~t~ 368 (574)
+..+.||+||.+=.....-+
T Consensus 10 ~~v~iHElGH~~~Ar~~Gv~ 29 (182)
T cd06163 10 ILIFVHELGHFLVAKLFGVK 29 (182)
T ss_pred HHHHHHHHHHHHHHHHcCCe
Confidence 56789999999876665443
No 58
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=42.70 E-value=12 Score=35.63 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=12.9
Q ss_pred hhhHHHHhhhhhhhh
Q 045994 346 FREVETVFHEFGHAL 360 (574)
Q Consensus 346 ~~~v~tLfHE~GHal 360 (574)
..-+.+++||+||.+
T Consensus 129 ~~~a~~~AHElGH~l 143 (194)
T cd04269 129 LLFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHHhhc
Confidence 456899999999997
No 59
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=42.59 E-value=12 Score=37.78 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=12.8
Q ss_pred hhHHHHhhhhhhhhhhhhc
Q 045994 347 REVETVFHEFGHALQHMLT 365 (574)
Q Consensus 347 ~~v~tLfHE~GHalH~lls 365 (574)
.-..++.|||||++-.|--
T Consensus 215 ~~~~v~vHE~GHsf~~LaD 233 (264)
T PF09471_consen 215 SFKQVVVHEFGHSFGGLAD 233 (264)
T ss_dssp THHHHHHHHHHHHTT----
T ss_pred cccceeeeecccccccccc
Confidence 3468899999999887653
No 60
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=41.59 E-value=13 Score=34.76 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=14.0
Q ss_pred HHHHhhhhhhhhhhhhccC
Q 045994 349 VETVFHEFGHALQHMLTKQ 367 (574)
Q Consensus 349 v~tLfHE~GHalH~lls~t 367 (574)
+..+.||+||++=.....-
T Consensus 9 i~i~iHE~gH~~~A~~~G~ 27 (180)
T cd05709 9 ISVTVHELGHALVARRLGV 27 (180)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 4578999999986555443
No 61
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=41.34 E-value=14 Score=35.85 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=12.9
Q ss_pred HHHHhhhhhhhhhhhhc
Q 045994 349 VETVFHEFGHALQHMLT 365 (574)
Q Consensus 349 v~tLfHE~GHalH~lls 365 (574)
+..++||+||++=...-
T Consensus 39 ~~v~iHElgH~~~A~~~ 55 (208)
T cd06161 39 LSVLLHELGHALVARRY 55 (208)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 46689999999865543
No 62
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=41.14 E-value=14 Score=31.61 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=15.0
Q ss_pred HHHHhhhhhhhhhhhhcc
Q 045994 349 VETVFHEFGHALQHMLTK 366 (574)
Q Consensus 349 v~tLfHE~GHalH~lls~ 366 (574)
..+|.||++|.+|.-...
T Consensus 26 ~~~l~HE~~H~~~~~~~~ 43 (128)
T PF13485_consen 26 DRVLAHELAHQWFGNYFG 43 (128)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 389999999999977643
No 63
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=39.97 E-value=14 Score=35.54 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=10.8
Q ss_pred HHHHhhhhhhhhh
Q 045994 349 VETVFHEFGHALQ 361 (574)
Q Consensus 349 v~tLfHE~GHalH 361 (574)
..++.||+||+|=
T Consensus 117 ~~~~~he~gh~lG 129 (197)
T cd04276 117 RYLLAHEVGHTLG 129 (197)
T ss_pred HHHHHHHHHHHhc
Confidence 3689999999963
No 64
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=39.65 E-value=18 Score=34.90 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=15.6
Q ss_pred ChhhHH-HHhhhhhhhhhhhh
Q 045994 345 TFREVE-TVFHEFGHALQHML 364 (574)
Q Consensus 345 ~~~~v~-tLfHE~GHalH~ll 364 (574)
+.+++. .|.||+||..|.-.
T Consensus 85 ~~~el~aVlaHElgH~~~~h~ 105 (226)
T PF01435_consen 85 SEDELAAVLAHELGHIKHRHI 105 (226)
T ss_dssp SHHHHHHHHHHHHHHHHTTHC
T ss_pred cHHHHHHHHHHHHHHHHcCCc
Confidence 677765 78999999987443
No 65
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=37.27 E-value=44 Score=37.59 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=14.6
Q ss_pred CCCceeEeeccCCCCCCCCCCC
Q 045994 281 SGSPIAYFYFDPYSRPSEKKGG 302 (574)
Q Consensus 281 ~~~~lG~iylDl~~R~gKk~~g 302 (574)
+++.||--|+-- +|.| ..||
T Consensus 338 e~GtLGLAwVgs-p~~~-saGG 357 (764)
T KOG3658|consen 338 EGGTLGLAWVGS-PRSN-SAGG 357 (764)
T ss_pred ccceeeeEEecc-CccC-CCCc
Confidence 688999999865 6666 4444
No 66
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=37.02 E-value=18 Score=29.26 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.9
Q ss_pred ChhhHHHHhhhhhhhhhh
Q 045994 345 TFREVETVFHEFGHALQH 362 (574)
Q Consensus 345 ~~~~v~tLfHE~GHalH~ 362 (574)
+..+...|.||+.|.++.
T Consensus 58 s~~~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 58 SPEGRALLAHELAHVVQQ 75 (79)
T ss_pred CCCcchhHhHHHHHHHhh
Confidence 556778899999999874
No 67
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=34.71 E-value=17 Score=35.76 Aligned_cols=13 Identities=62% Similarity=0.613 Sum_probs=10.9
Q ss_pred HHHHhhhhhhhhh
Q 045994 349 VETVFHEFGHALQ 361 (574)
Q Consensus 349 v~tLfHE~GHalH 361 (574)
+-|..||+||||=
T Consensus 121 ~Gti~HEl~HalG 133 (230)
T cd04282 121 KATVEHEFLHALG 133 (230)
T ss_pred CchHHHHHHHHhC
Confidence 4678999999975
No 68
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=34.69 E-value=27 Score=33.17 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=15.4
Q ss_pred ChhhHHHHhhhhhhhhhhh
Q 045994 345 TFREVETVFHEFGHALQHM 363 (574)
Q Consensus 345 ~~~~v~tLfHE~GHalH~l 363 (574)
+......-+||-|||+++-
T Consensus 89 Sia~~aVAAHEVGHAiQd~ 107 (226)
T COG2738 89 SIAAIAVAAHEVGHAIQDQ 107 (226)
T ss_pred cHHHHHHHHHHhhHHHhhh
Confidence 5667777899999999853
No 69
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=34.00 E-value=21 Score=36.00 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=12.3
Q ss_pred HHHHhhhhhhhhhhhh
Q 045994 349 VETVFHEFGHALQHML 364 (574)
Q Consensus 349 v~tLfHE~GHalH~ll 364 (574)
+..+.||+||++=...
T Consensus 119 isv~iHElgHa~~Ar~ 134 (263)
T cd06159 119 VGVVVHELSHGILARV 134 (263)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578999999976444
No 70
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=32.09 E-value=23 Score=34.78 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=12.2
Q ss_pred HHHHhhhhhhhhhhhh
Q 045994 349 VETVFHEFGHALQHML 364 (574)
Q Consensus 349 v~tLfHE~GHalH~ll 364 (574)
+..++||+||++=...
T Consensus 54 ~~v~iHElgH~~~A~~ 69 (227)
T cd06164 54 ASVLLHELGHSLVARR 69 (227)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4668999999976443
No 71
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=29.50 E-value=11 Score=37.04 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=13.8
Q ss_pred ChhhHHHHhhhhhhhhh
Q 045994 345 TFREVETVFHEFGHALQ 361 (574)
Q Consensus 345 ~~~~v~tLfHE~GHalH 361 (574)
..+.-.||.||+||.|-
T Consensus 134 ~~n~g~t~~HEvGH~lG 150 (225)
T cd04275 134 PYNLGDTATHEVGHWLG 150 (225)
T ss_pred cccccceeEEeccceee
Confidence 45666899999999975
No 72
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=29.29 E-value=28 Score=35.30 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=12.3
Q ss_pred HHHHhhhhhhhhhhhh
Q 045994 349 VETVFHEFGHALQHML 364 (574)
Q Consensus 349 v~tLfHE~GHalH~ll 364 (574)
+..+.||+||++=...
T Consensus 136 isvvvHElgHal~A~~ 151 (277)
T cd06162 136 ISGVVHEMGHGVAAVR 151 (277)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999976543
No 73
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=29.25 E-value=1.4e+02 Score=23.00 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=23.3
Q ss_pred HHHHHHHHHhc---ceeeeCCCCCCccccceeEEEEEcCCCCceeEeeccCC
Q 045994 245 GLFNLAKTLFG---IDIEPADGLAPVWNNDVRFYCVKDSSGSPIAYFYFDPY 293 (574)
Q Consensus 245 gl~~~~~~lfg---i~~~~~~~~~~~w~~dV~~~~v~~~~~~~lG~iylDl~ 293 (574)
.|...+.++|| +++.+.+.. ..+|.+| - +++|||.||-|--
T Consensus 4 klq~yLr~~f~n~~i~v~~rpk~----~dsaEV~---~-g~EfiGvi~~Ded 47 (63)
T PF11324_consen 4 KLQAYLRRTFGNPGITVKARPKK----DDSAEVY---I-GDEFIGVIYRDED 47 (63)
T ss_pred HHHHHHHHHhCCCceEEEcCCCC----CCceEEE---e-CCEEEEEEEeecC
Confidence 34455667774 445554321 2234333 2 6789999999844
No 74
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=28.67 E-value=45 Score=34.33 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=25.8
Q ss_pred HHHHhhhhhhhhhhhhcc----CccccccCcccccccccccch-hhHHHhhcCH
Q 045994 349 VETVFHEFGHALQHMLTK----QDESLVAGIRGIEWDAVELPS-QFMENWCYHR 397 (574)
Q Consensus 349 v~tLfHE~GHalH~lls~----t~~~~~sgt~~~~~df~E~pS-~l~E~~~~~~ 397 (574)
...|.||+||++-.-.+. +..-.+-|.--+.++.+-.|+ .|.|.|+.-|
T Consensus 276 AtvLgHE~aHaVarH~AEki~k~~~~siLgLvlyt~~~a~~~n~~Ll~~flrlP 329 (424)
T KOG2661|consen 276 ATVLGHEIAHAVARHAAEKIGKVHLLSILGLVLYTMIWAICPNDKLLEYFLRLP 329 (424)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccchHHHHHHHhcCc
Confidence 455799999997432221 111111122223456666666 5666666555
No 75
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=28.44 E-value=37 Score=39.21 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=14.2
Q ss_pred ChhhHHHHhhhhhhhh
Q 045994 345 TFREVETVFHEFGHAL 360 (574)
Q Consensus 345 ~~~~v~tLfHE~GHal 360 (574)
....+.|++||+||.|
T Consensus 320 ~~~~a~v~AhelgH~l 335 (716)
T KOG3607|consen 320 LLAFAVVLAHELGHNL 335 (716)
T ss_pred chhHHHHHHHHHHhhc
Confidence 6778899999999986
No 76
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=28.39 E-value=14 Score=35.55 Aligned_cols=15 Identities=40% Similarity=0.662 Sum_probs=12.2
Q ss_pred hhhHHHHhhhhhhhh
Q 045994 346 FREVETVFHEFGHAL 360 (574)
Q Consensus 346 ~~~v~tLfHE~GHal 360 (574)
+..+.+++||+||.|
T Consensus 138 ~~~a~~~aHElGH~L 152 (207)
T cd04273 138 LSSAFTIAHELGHVL 152 (207)
T ss_pred ceeEEeeeeechhhc
Confidence 345688999999986
No 77
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=27.78 E-value=53 Score=26.13 Aligned_cols=17 Identities=29% Similarity=0.555 Sum_probs=14.9
Q ss_pred HHHHHcCCCchHHHHHH
Q 045994 147 EKAKLLGYKNYAEVSMA 163 (574)
Q Consensus 147 ~~A~llGy~s~a~~~l~ 163 (574)
++++.+||++|.|+...
T Consensus 53 Rf~kkLG~~gf~efk~~ 69 (77)
T PF01418_consen 53 RFCKKLGFSGFKEFKIA 69 (77)
T ss_dssp HHHHHCTTTCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHH
Confidence 57999999999999765
No 78
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=27.66 E-value=30 Score=32.95 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.1
Q ss_pred ChhhHHHHhhhhhhhh
Q 045994 345 TFREVETVFHEFGHAL 360 (574)
Q Consensus 345 ~~~~v~tLfHE~GHal 360 (574)
...-..+++||+||.|
T Consensus 128 ~~~~a~~~AHelGH~l 143 (199)
T PF01421_consen 128 GLSFAVIIAHELGHNL 143 (199)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhc
Confidence 4566788999999985
No 79
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=27.51 E-value=27 Score=36.10 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=11.8
Q ss_pred hhHHHHhhhhhhhhh
Q 045994 347 REVETVFHEFGHALQ 361 (574)
Q Consensus 347 ~~v~tLfHE~GHalH 361 (574)
.+..++|||+||-+=
T Consensus 149 ~~~~~~~HElgHN~G 163 (314)
T PF05548_consen 149 QDWATIMHELGHNLG 163 (314)
T ss_pred ccHHHHHHHhhhhcc
Confidence 345699999999864
No 80
>PF01742 Peptidase_M27: Clostridial neurotoxin zinc protease This family is a subset of the Prosite family; InterPro: IPR000395 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M27 (clan MA(E)). A number of the proteins have been classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the family. There are seven antigenically distinct forms of botulinum neurotoxin, designated A, B, C1, D, E, F and G. The seven neurotoxins are potent protein toxins that inhibit neurotransmitter release from peripheral cholinergic synapses []. On binding to the neuronal synapses, the molecules are internalised and move by retrograde transport up the axon into the spinal cord, where they can move between post- and presynaptic neurons. The toxin inhibits neurotransmitter release by acting as a zinc endopeptidase that cleaves synaptic proteins such as synaptobrevins, syntaxin and SNAP-25 []. The protein toxins exist as disulphide-linked heterodimers of light and heavy chains. The light chain has the pharmacological activity, while the N- and C-termini of the heavy chain mediate channel formation and toxin binding []. The light chain exhibits a high level of sequence similarity to tetanus toxin (TeTx). Alignment of all characterised neurotoxin sequences reveals the presence of highly conserved amino acid domains interspersed with amino acid tracts with little overall similarity. The most divergent region corresponds to the C-terminal extremity of each toxin, which may reflect differences in specificity of binding to neurone acceptor sites []. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0009405 pathogenesis; PDB: 2QN0_A 3D3X_A 3NF3_A 2ISG_A 2ISE_B 2IMC_B 2IMA_B 2ILP_A 2IMB_A 2ISH_A ....
Probab=26.23 E-value=38 Score=35.70 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=18.8
Q ss_pred CCCChhhHHHHhhhhhhhhhhhhcc
Q 045994 342 SLMTFREVETVFHEFGHALQHMLTK 366 (574)
Q Consensus 342 ~ll~~~~v~tLfHE~GHalH~lls~ 366 (574)
+..-.+=+.+|+||+=|+||.|.+-
T Consensus 208 ~~F~~DPAl~LmheLIh~Lh~LYGi 232 (408)
T PF01742_consen 208 SEFYADPALELMHELIHSLHGLYGI 232 (408)
T ss_dssp SEEE--HHHHHHHHHHHHHHHHTTT
T ss_pred hheecCHHHHHHHHHHHHHHhhccc
Confidence 3344566889999999999999874
No 81
>PF10462 Peptidase_M66: Peptidase M66; InterPro: IPR019503 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of metallopeptidases belonging to MEROPS peptidase family M66 (StcE peptidase, clan MA). The StcE peptidase is a virulence factor found in Shiga toxigenic Escherichia coli strains. StcE peptidase cleaves C1 esterase inhibitor []. The SwissProt proteins in this entry have been name "Dictomallein". ; GO: 0004222 metalloendopeptidase activity; PDB: 3UJZ_A.
Probab=26.23 E-value=31 Score=35.43 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=12.5
Q ss_pred ChhhHHHHhhhhhhhh
Q 045994 345 TFREVETVFHEFGHAL 360 (574)
Q Consensus 345 ~~~~v~tLfHE~GHal 360 (574)
....-.++.||+||++
T Consensus 190 ~~s~~~~f~HE~GH~~ 205 (305)
T PF10462_consen 190 DYSYGNEFSHELGHNF 205 (305)
T ss_dssp SS-SHHHHHHHHHHTT
T ss_pred ccCccceeehhhhhhc
Confidence 5556778999999996
No 82
>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]
Probab=26.12 E-value=63 Score=34.11 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=28.2
Q ss_pred ccCeEEEE--ccCCCCCCCCCCCCChhhHHHHhhhhhhhhhhhhccCc
Q 045994 323 RLPVAHMV--CNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQD 368 (574)
Q Consensus 323 ~~P~~~l~--~nf~~~~~~~p~ll~~~~v~tLfHE~GHalH~lls~t~ 368 (574)
..|++.-. -.++-|-.+-+-.++.--+...+||+|||+--..-..+
T Consensus 104 hnpv~le~iiPg~nLpl~~I~yf~t~lvi~~vvHElGHalAA~segV~ 151 (484)
T KOG2921|consen 104 HNPVFLESIIPGTNLPLSGIAYFLTSLVITVVVHELGHALAAASEGVQ 151 (484)
T ss_pred CCceEEEeecCccccccccchhhhhhHHHHHHHHHhhHHHHHHhcCce
Confidence 34544322 23333444555566666677789999999886665543
No 83
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=26.09 E-value=36 Score=31.18 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.2
Q ss_pred hHHHHhhhhhhhhh
Q 045994 348 EVETVFHEFGHALQ 361 (574)
Q Consensus 348 ~v~tLfHE~GHalH 361 (574)
.+..+.|||+|++=
T Consensus 135 ~lDVvaHEltHGVt 148 (150)
T PF01447_consen 135 SLDVVAHELTHGVT 148 (150)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred ccceeeeccccccc
Confidence 37779999999974
No 84
>COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.31 E-value=36 Score=32.67 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=16.8
Q ss_pred CCCCCChhhHHHHhhhhhhhhh
Q 045994 340 KPSLMTFREVETVFHEFGHALQ 361 (574)
Q Consensus 340 ~p~ll~~~~v~tLfHE~GHalH 361 (574)
.|..+.-+=+-|.-||+|||+-
T Consensus 179 ~pg~~~e~L~~tarhElGhaLg 200 (236)
T COG5549 179 PPGELRENLNPTARHELGHALG 200 (236)
T ss_pred CcccchhhhhHHHHHhhcchhe
Confidence 3455566667899999999974
No 85
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=25.31 E-value=37 Score=32.21 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=12.0
Q ss_pred HHHhhhhhhhhhhhhc
Q 045994 350 ETVFHEFGHALQHMLT 365 (574)
Q Consensus 350 ~tLfHE~GHalH~lls 365 (574)
..+.||+||++=...-
T Consensus 43 ~l~iHElgH~~~A~~~ 58 (183)
T cd06160 43 ILGIHEMGHYLAARRH 58 (183)
T ss_pred HHHHHHHHHHHHHHHC
Confidence 4579999999765544
No 86
>PRK14127 cell division protein GpsB; Provisional
Probab=24.76 E-value=1e+02 Score=26.66 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhhccchHHHHHHHHH
Q 045994 168 TVDKAFELLEKLQSASWDPAVQDMEDLK 195 (574)
Q Consensus 168 ~pe~v~~fL~~l~~~~~p~~~~e~~~l~ 195 (574)
+++.|..||+.|.+.+ ..+.+|...|+
T Consensus 24 d~~EVD~FLd~V~~dy-e~l~~e~~~Lk 50 (109)
T PRK14127 24 DQDEVDKFLDDVIKDY-EAFQKEIEELQ 50 (109)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8999999999999874 44555665554
No 87
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=24.17 E-value=2.7e+02 Score=22.07 Aligned_cols=76 Identities=22% Similarity=0.374 Sum_probs=49.1
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCChhhhcCCCHHHHHHHHHHHHhcCCCCCCCCCCceEEeecCC
Q 045994 22 EDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPATALGLAAQTALSKGHENATAENGPWIITLDAP 101 (574)
Q Consensus 22 ~~~~r~~~~~l~~~i~~l~~~f~~n~~~~~~~~~~~~~~~~eL~g~p~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~ 101 (574)
++++-++|++-..+|..+..++.+.+.... +.++...|+...-........+. | |+..
T Consensus 2 s~~el~~fA~A~~~ie~ir~~~~~~l~~~~--------~~~~~~~l~~~a~~~~~~~I~~~---------G-----Ltv~ 59 (78)
T PF13767_consen 2 SDAELDQFARAVLEIEPIRQEYQQELQAAE--------DPEEIQELQEEAQEEMVEAIEEN---------G-----LTVE 59 (78)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHHHHHHHHHc---------C-----CCHH
Confidence 577888999999999999999999877642 34555566666555544322222 3 2233
Q ss_pred cHHHHhh-cCCCHHHHHHH
Q 045994 102 SFMSVMQ-HAKNRVLREEV 119 (574)
Q Consensus 102 ~~~~vl~-~~~d~~~Rk~~ 119 (574)
.|..++. -..|+++|+++
T Consensus 60 ~fN~I~~~~q~Dp~L~~rI 78 (78)
T PF13767_consen 60 RFNEITQAAQSDPELRQRI 78 (78)
T ss_pred HHHHHHHHHHcCHHHHhcC
Confidence 5655553 33688888764
No 88
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=23.55 E-value=36 Score=34.55 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=14.9
Q ss_pred CChhhHH-HHhhhhhhhhh
Q 045994 344 MTFREVE-TVFHEFGHALQ 361 (574)
Q Consensus 344 l~~~~v~-tLfHE~GHalH 361 (574)
|+.+|+. .|.||+||..|
T Consensus 152 l~~dEl~aVlaHElgHi~~ 170 (302)
T COG0501 152 LNDDELEAVLAHELGHIKN 170 (302)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 5778875 58999999988
No 89
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=23.43 E-value=39 Score=36.48 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=14.4
Q ss_pred hHHHHhhhhhhhhhhhhcc
Q 045994 348 EVETVFHEFGHALQHMLTK 366 (574)
Q Consensus 348 ~v~tLfHE~GHalH~lls~ 366 (574)
-+..++||+||.+-.-...
T Consensus 14 ~~~v~~HE~gH~~~a~~~g 32 (420)
T TIGR00054 14 AVLIFVHELGHFLAARLCG 32 (420)
T ss_pred HHHHHHHhHHHHHHHHHcC
Confidence 3577899999998765543
No 90
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=22.17 E-value=39 Score=33.60 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=11.7
Q ss_pred hhhHHHHhhhhhhhh
Q 045994 346 FREVETVFHEFGHAL 360 (574)
Q Consensus 346 ~~~v~tLfHE~GHal 360 (574)
.+=..||+||+||..
T Consensus 201 ~~yyaTl~HElghwt 215 (316)
T COG4227 201 INYYATLLHELGHWT 215 (316)
T ss_pred HhHHHHHHHHhcccc
Confidence 344789999999863
No 91
>PRK03982 heat shock protein HtpX; Provisional
Probab=22.07 E-value=40 Score=34.38 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.0
Q ss_pred ChhhH-HHHhhhhhhhhhh
Q 045994 345 TFREV-ETVFHEFGHALQH 362 (574)
Q Consensus 345 ~~~~v-~tLfHE~GHalH~ 362 (574)
+.+|+ ..|+||+||.-|.
T Consensus 121 ~~~El~AVlAHElgHi~~~ 139 (288)
T PRK03982 121 NEDELEGVIAHELTHIKNR 139 (288)
T ss_pred CHHHHHHHHHHHHHHHHcC
Confidence 55665 4689999999884
No 92
>PF05062 RICH: RICH domain; InterPro: IPR007756 This domain is about 85 residues in length and very rich in charged residues, hence the name RICH (Rich In CHarged residues). It is found in secreted proteins such as PspC Q9KK19 from SWISSPROT, SpsA O33742 from SWISSPROT and IgA FC receptor P27951 from SWISSPROT from Streptococcus agalactiae. This domain could be involved in bacterial adherence or cell wall binding.
Probab=21.66 E-value=3.6e+02 Score=22.03 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCChhhhcCCCHHHHHHH
Q 045994 6 VCAAQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPATALGLA 75 (574)
Q Consensus 6 ~l~~~~~~f~~~G~~L~~~~r~~~~~l~~~i~~l~~~f~~n~~~~~~~~~~~~~~~~eL~g~p~~~~~~~ 75 (574)
++++++.+.. .+|+.++-.+.++|..++..+-++|...+...+.. +.+++.+|...-..+
T Consensus 14 y~~kiL~ei~---~~L~k~kHtq~v~LikkL~~Ik~~YL~~l~~~~~k-------~~~~~~l~~k~k~el 73 (82)
T PF05062_consen 14 YMEKILSEIK---KQLDKRKHTQNVALIKKLSAIKTEYLYELDVSKEK-------ESEKAELPSKIKSEL 73 (82)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHhHHHHHHHH
Confidence 3444444433 37777778889999999999999999998876521 257778887766655
No 93
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=20.93 E-value=2.5e+02 Score=22.28 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHcCCC--chHHHHHHhhcC--CHHHH-HHHHHHHHhhccchHHHHHHHHHHHHHh
Q 045994 136 PIIDRILKLRLEKAKLLGYK--NYAEVSMAMKMA--TVDKA-FELLEKLQSASWDPAVQDMEDLKSFSKS 200 (574)
Q Consensus 136 ~~l~~ll~lR~~~A~llGy~--s~a~~~l~~~m~--~pe~v-~~fL~~l~~~~~p~~~~e~~~l~~~k~~ 200 (574)
.+++.|-..|.++--+|+-. |+.||.+-.+.. -|+.+ ..|+..+.+.+ ..+++.++.|.++|++
T Consensus 7 ~I~k~IE~~~~eIe~LL~~AkiSl~DyImiKRGS~DmPe~l~~~~~~QideeV-~~LKe~IdaLNK~KkE 75 (79)
T PF10398_consen 7 LILKNIENAQEEIEILLKIAKISLVDYIMIKRGSQDMPEHLNMAFLAQIDEEV-EKLKEHIDALNKIKKE 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--HHHHHHHHTTSS---TTS-HHHHHHHHHHH-HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHhcccCCcCcccccHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45666666677666666554 689998877655 57776 58899998885 5677778888877765
No 94
>PTZ00337 surface protease GP63; Provisional
Probab=20.78 E-value=64 Score=36.22 Aligned_cols=33 Identities=36% Similarity=0.404 Sum_probs=21.8
Q ss_pred ccCeEEEEccCCCCCCCCCCCCChhhHHHHhhhhhhhh
Q 045994 323 RLPVAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHAL 360 (574)
Q Consensus 323 ~~P~~~l~~nf~~~~~~~p~ll~~~~v~tLfHE~GHal 360 (574)
..|++.. .||.+..- |. +-..+.+++||+.|||
T Consensus 209 ~RPi~G~-in~np~~i--~~--~~~~~~v~~HEi~HAL 241 (567)
T PTZ00337 209 GRPFAAA-VNFDPRQI--AV--TNGDVRVAAHELGHAL 241 (567)
T ss_pred CCceEEE-EEECHHHc--cc--hhHHHHHHHHHHHHHH
Confidence 3677754 36643111 11 4567999999999998
No 95
>PF07998 Peptidase_M54: Peptidase family M54; InterPro: IPR012962 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents zinc-dependent peptidases belonging to the MEROPS peptidase family M54, more commonly known as the archaemetzincins. The family has a wide taxonomic distribution, being found in archaea, bacteria and eukaryotes. Two human homologues have been characterised []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 3LMC_A 2XHQ_A 2X7M_A.
Probab=20.39 E-value=51 Score=31.54 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=16.2
Q ss_pred CCCCChhhHHHHhhhhhhhhh
Q 045994 341 PSLMTFREVETVFHEFGHALQ 361 (574)
Q Consensus 341 p~ll~~~~v~tLfHE~GHalH 361 (574)
+.++.-.-+.+..||+||.+-
T Consensus 138 ~~l~~~R~~Kea~HElGH~~G 158 (194)
T PF07998_consen 138 EELFLERVCKEAVHELGHLFG 158 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 445556667899999999974
No 96
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=20.35 E-value=23 Score=40.29 Aligned_cols=13 Identities=46% Similarity=0.825 Sum_probs=11.1
Q ss_pred hHHHHhhhhhhhh
Q 045994 348 EVETVFHEFGHAL 360 (574)
Q Consensus 348 ~v~tLfHE~GHal 360 (574)
-|-++.|||||+|
T Consensus 221 giGVfaHEfGH~L 233 (645)
T PF05547_consen 221 GIGVFAHEFGHDL 233 (645)
T ss_pred ceEEEEeeccccC
Confidence 4778999999986
No 97
>PRK02870 heat shock protein HtpX; Provisional
Probab=20.32 E-value=46 Score=34.81 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=14.9
Q ss_pred CChhhHH-HHhhhhhhhhhhh
Q 045994 344 MTFREVE-TVFHEFGHALQHM 363 (574)
Q Consensus 344 l~~~~v~-tLfHE~GHalH~l 363 (574)
|+.+|+. .++||+||.-|.-
T Consensus 168 L~~dEL~aVlAHELgHik~~d 188 (336)
T PRK02870 168 LDRDELQAVMAHELSHIRHGD 188 (336)
T ss_pred CCHHHHHHHHHHHHHHHHccc
Confidence 3666764 5799999998843
No 98
>PRK03001 M48 family peptidase; Provisional
Probab=20.28 E-value=45 Score=33.87 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=14.2
Q ss_pred ChhhH-HHHhhhhhhhhhh
Q 045994 345 TFREV-ETVFHEFGHALQH 362 (574)
Q Consensus 345 ~~~~v-~tLfHE~GHalH~ 362 (574)
+.+|+ ..|+||+||.-|.
T Consensus 120 ~~~El~aVlAHElgHi~~~ 138 (283)
T PRK03001 120 SEREIRGVMAHELAHVKHR 138 (283)
T ss_pred CHHHHHHHHHHHHHHHhCC
Confidence 66666 4679999999884
No 99
>KOG3714 consensus Meprin A metalloprotease [Posttranslational modification, protein turnover, chaperones]
Probab=20.22 E-value=43 Score=36.05 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=14.0
Q ss_pred HHHHhhhhhhhhhhhhccC
Q 045994 349 VETVFHEFGHALQHMLTKQ 367 (574)
Q Consensus 349 v~tLfHE~GHalH~lls~t 367 (574)
.-|..|||||||=..-.++
T Consensus 160 ~G~i~HEl~HaLGf~Hehs 178 (411)
T KOG3714|consen 160 FGTIVHELMHALGFWHEHS 178 (411)
T ss_pred CchhHHHHHHHhhhhhccC
Confidence 5678999999986554433
No 100
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=20.03 E-value=51 Score=35.94 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=13.3
Q ss_pred HHHHhhhhhhhhhhhhcc
Q 045994 349 VETVFHEFGHALQHMLTK 366 (574)
Q Consensus 349 v~tLfHE~GHalH~lls~ 366 (574)
+..++||+||.+=--+..
T Consensus 16 ~li~vHElGHfl~Ar~~g 33 (449)
T PRK10779 16 VLITVHEFGHFWVARRCG 33 (449)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 466799999998755443
Done!