Query 045995
Match_columns 1129
No_of_seqs 351 out of 1341
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:38:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0903 Phosphatidylinositol 4 100.0 3E-149 7E-154 1291.2 44.4 833 243-1129 4-847 (847)
2 cd05168 PI4Kc_III_beta Phospho 100.0 1E-81 2.3E-86 689.4 31.9 289 837-1129 3-293 (293)
3 cd00893 PI4Kc_III Phosphoinosi 100.0 3.5E-78 7.7E-83 660.5 30.6 280 842-1129 3-289 (289)
4 cd05167 PI4Kc_III_alpha Phosph 100.0 5E-78 1.1E-82 664.4 30.7 293 824-1129 5-311 (311)
5 cd00895 PI3Kc_C2_beta Phosphoi 100.0 3.4E-76 7.5E-81 657.2 32.8 299 810-1126 49-354 (354)
6 cd05176 PI3Kc_C2_alpha Phospho 100.0 2.5E-75 5.4E-80 650.1 31.2 310 797-1126 37-353 (353)
7 cd05165 PI3Kc_I Phosphoinositi 100.0 2.7E-74 5.8E-79 645.8 31.8 312 797-1125 35-364 (366)
8 cd05177 PI3Kc_C2_gamma Phospho 100.0 3.1E-74 6.7E-79 643.0 30.8 299 810-1126 49-354 (354)
9 cd00894 PI3Kc_IB_gamma Phospho 100.0 3.6E-74 7.9E-79 643.6 29.8 301 810-1127 54-365 (365)
10 cd05174 PI3Kc_IA_delta Phospho 100.0 3.2E-73 7E-78 635.2 31.9 310 797-1124 34-359 (361)
11 cd05173 PI3Kc_IA_beta Phosphoi 100.0 4.7E-73 1E-77 635.0 32.3 311 797-1125 34-360 (362)
12 cd05175 PI3Kc_IA_alpha Phospho 100.0 4E-73 8.6E-78 633.9 30.4 309 797-1123 34-362 (366)
13 cd00891 PI3Kc Phosphoinositide 100.0 5.2E-73 1.1E-77 634.6 30.9 310 797-1126 31-352 (352)
14 cd05166 PI3Kc_II Phosphoinosit 100.0 1.6E-72 3.5E-77 630.4 33.2 299 810-1126 48-353 (353)
15 cd00896 PI3Kc_III Phosphoinosi 100.0 9.7E-73 2.1E-77 631.8 31.0 306 797-1127 32-349 (350)
16 KOG0906 Phosphatidylinositol 3 100.0 1.7E-68 3.6E-73 610.7 23.5 319 773-1126 511-840 (843)
17 KOG0902 Phosphatidylinositol 4 100.0 7.8E-65 1.7E-69 611.7 32.8 251 869-1128 1548-1801(1803)
18 KOG0905 Phosphoinositide 3-kin 100.0 6E-62 1.3E-66 577.9 23.8 330 774-1126 1011-1347(1639)
19 KOG0904 Phosphatidylinositol 3 100.0 3.1E-58 6.7E-63 538.5 19.7 287 824-1121 771-1071(1076)
20 cd00892 PIKKc_ATR ATR (Ataxia 100.0 2.6E-54 5.7E-59 461.5 21.7 218 848-1076 13-236 (237)
21 cd05172 PIKKc_DNA-PK DNA-depen 100.0 5E-54 1.1E-58 458.9 21.0 215 848-1076 13-234 (235)
22 cd05169 PIKKc_TOR TOR (Target 100.0 4.2E-53 9.1E-58 460.8 19.5 219 848-1076 13-279 (280)
23 COG5032 TEL1 Phosphatidylinosi 100.0 3.7E-53 8.1E-58 552.7 21.9 290 824-1129 1762-2100(2105)
24 cd05171 PIKKc_ATM Ataxia telan 100.0 1.3E-52 2.7E-57 457.7 21.3 219 848-1076 13-278 (279)
25 smart00146 PI3Kc Phosphoinosit 100.0 2.8E-52 6.1E-57 435.0 20.4 194 868-1078 1-200 (202)
26 cd00142 PI3Kc_like Phosphoinos 100.0 2.5E-52 5.4E-57 440.6 20.1 203 849-1069 14-218 (219)
27 cd05164 PIKKc Phosphoinositide 100.0 1E-51 2.3E-56 437.6 20.7 203 848-1069 13-221 (222)
28 cd05170 PIKKc_SMG1 Suppressor 100.0 5.2E-50 1.1E-54 442.6 21.0 219 848-1076 13-306 (307)
29 KOG0890 Protein kinase of the 100.0 1.7E-47 3.7E-52 481.2 24.0 267 846-1122 2053-2379(2382)
30 PF00454 PI3_PI4_kinase: Phosp 100.0 2.7E-47 6E-52 401.3 18.7 207 866-1076 1-234 (235)
31 cd05163 TRRAP TRansformation/t 100.0 3.1E-45 6.7E-50 395.2 21.4 218 849-1076 15-252 (253)
32 KOG0892 Protein kinase ATM/Tel 100.0 5.4E-42 1.2E-46 433.5 14.8 221 849-1079 2456-2725(2806)
33 PTZ00303 phosphatidylinositol 100.0 8.4E-38 1.8E-42 361.0 21.1 228 867-1111 1052-1325(1374)
34 KOG0891 DNA-dependent protein 99.9 3E-28 6.4E-33 315.7 5.0 237 824-1077 1954-2237(2341)
35 KOG0903 Phosphatidylinositol 4 99.8 1.6E-19 3.4E-24 212.9 7.7 204 226-456 27-233 (847)
36 KOG0889 Histone acetyltransfer 99.2 6.9E-11 1.5E-15 156.7 13.5 208 843-1060 3202-3465(3550)
37 cd00864 PI3Ka Phosphoinositide 99.0 3.3E-10 7.2E-15 115.3 5.4 93 32-124 56-152 (152)
38 PF00613 PI3Ka: Phosphoinositi 98.7 7.2E-09 1.6E-13 108.6 4.5 91 35-125 65-159 (184)
39 smart00145 PI3Ka Phosphoinosit 98.7 2E-08 4.4E-13 105.4 6.5 85 42-126 72-159 (184)
40 cd00871 PI4Ka Phosphoinositide 98.4 2.1E-07 4.7E-12 97.1 4.8 84 42-125 66-151 (175)
41 cd00870 PI3Ka_III Phosphoinosi 98.4 2.6E-07 5.5E-12 95.8 4.5 83 42-124 74-166 (166)
42 cd00869 PI3Ka_II Phosphoinosit 98.2 1.8E-06 4E-11 89.8 6.7 84 42-125 67-153 (169)
43 cd00872 PI3Ka_I Phosphoinositi 98.2 3.3E-06 7.2E-11 88.1 6.6 83 42-124 67-152 (171)
44 cd00891 PI3Kc Phosphoinositide 97.3 0.00035 7.5E-09 80.5 6.1 82 534-622 3-84 (352)
45 cd05177 PI3Kc_C2_gamma Phospho 96.7 0.0021 4.6E-08 74.2 6.2 82 534-621 3-84 (354)
46 cd00895 PI3Kc_C2_beta Phosphoi 95.6 0.019 4.2E-07 66.5 6.2 83 534-622 3-85 (354)
47 KOG0905 Phosphoinositide 3-kin 95.4 0.012 2.6E-07 75.0 4.1 106 16-126 861-973 (1639)
48 KOG0902 Phosphatidylinositol 4 94.6 0.042 9E-07 71.6 5.6 76 47-122 1336-1413(1803)
49 cd00896 PI3Kc_III Phosphoinosi 94.6 0.044 9.5E-07 63.6 5.4 85 533-624 2-90 (350)
50 cd00894 PI3Kc_IB_gamma Phospho 94.3 0.053 1.1E-06 63.2 5.2 81 534-622 3-90 (365)
51 cd05166 PI3Kc_II Phosphoinosit 94.0 0.08 1.7E-06 61.5 5.8 79 535-620 4-82 (353)
52 cd05165 PI3Kc_I Phosphoinositi 92.6 0.11 2.4E-06 60.7 4.2 82 534-622 3-89 (366)
53 PF13575 DUF4135: Domain of un 92.6 0.66 1.4E-05 53.9 10.4 107 868-1005 72-178 (370)
54 cd05173 PI3Kc_IA_beta Phosphoi 92.0 0.18 3.9E-06 58.9 4.9 80 534-621 3-87 (362)
55 cd05176 PI3Kc_C2_alpha Phospho 91.2 0.34 7.3E-06 56.5 6.0 78 535-619 4-81 (353)
56 KOG0904 Phosphatidylinositol 3 89.4 0.31 6.8E-06 61.5 3.8 84 42-125 607-693 (1076)
57 TIGR03843 conserved hypothetic 87.2 0.78 1.7E-05 51.1 4.8 129 898-1028 65-199 (253)
58 KOG0906 Phosphatidylinositol 3 83.7 0.25 5.4E-06 60.7 -1.1 88 42-129 337-472 (843)
59 cd04792 LanM-like LanM-like pr 80.4 7 0.00015 50.0 9.8 106 868-1007 115-220 (825)
60 KOG0608 Warts/lats-like serine 77.3 4.1 8.9E-05 50.9 6.0 35 970-1004 740-778 (1034)
61 COG0661 AarF Predicted unusual 75.9 1.6 3.5E-05 53.4 2.3 29 979-1007 289-317 (517)
62 cd05175 PI3Kc_IA_alpha Phospho 71.5 7.3 0.00016 46.0 6.1 84 533-621 2-87 (366)
63 PRK04750 ubiB putative ubiquin 66.8 4.5 9.7E-05 49.9 3.2 29 979-1007 284-316 (537)
64 cd05174 PI3Kc_IA_delta Phospho 64.9 11 0.00023 44.6 5.7 81 535-621 4-87 (361)
65 KOG0616 cAMP-dependent protein 62.2 3 6.5E-05 48.1 0.6 59 970-1028 155-217 (355)
66 TIGR03724 arch_bud32 Kae1-asso 60.5 11 0.00024 38.8 4.3 27 975-1002 108-136 (199)
67 PF06293 Kdo: Lipopolysacchari 59.7 25 0.00054 37.5 6.9 70 917-1003 95-169 (206)
68 PRK14879 serine/threonine prot 59.5 58 0.0013 33.8 9.4 24 979-1003 119-142 (211)
69 cd05151 ChoK Choline Kinase (C 57.5 7.5 0.00016 38.6 2.4 28 976-1004 109-136 (170)
70 cd05034 PTKc_Src_like Catalyti 56.6 85 0.0019 33.1 10.2 28 978-1005 126-153 (261)
71 TIGR01982 UbiB 2-polyprenylphe 56.3 13 0.00027 44.6 4.4 26 979-1004 281-306 (437)
72 KOG0592 3-phosphoinositide-dep 53.4 1.5E+02 0.0032 37.3 12.5 69 972-1040 187-272 (604)
73 cd05167 PI4Kc_III_alpha Phosph 53.1 11 0.00024 43.6 3.1 35 591-625 5-39 (311)
74 cd05145 RIO1_like RIO kinase f 52.8 8.6 0.00019 40.1 2.0 25 979-1004 142-166 (190)
75 cd05590 STKc_nPKC_eta Catalyti 52.5 1.3E+02 0.0029 33.5 11.4 25 979-1003 120-144 (320)
76 cd05602 STKc_SGK1 Catalytic do 50.7 1.5E+02 0.0033 33.1 11.4 25 979-1003 120-144 (325)
77 cd05603 STKc_SGK2 Catalytic do 50.3 1.5E+02 0.0032 33.0 11.3 25 979-1003 120-144 (321)
78 PRK10359 lipopolysaccharide co 50.1 9.3 0.0002 42.4 1.9 24 979-1003 159-182 (232)
79 cd05604 STKc_SGK3 Catalytic do 48.4 2E+02 0.0042 32.2 11.9 25 979-1003 120-144 (325)
80 cd05101 PTKc_FGFR2 Catalytic d 46.8 2.5E+02 0.0055 30.7 12.3 27 979-1005 161-187 (304)
81 cd05147 RIO1_euk RIO kinase fa 46.6 11 0.00023 39.9 1.6 27 977-1004 138-166 (190)
82 PRK15123 lipopolysaccharide co 45.4 44 0.00095 37.8 6.2 71 917-1002 113-192 (268)
83 cd05627 STKc_NDR2 Catalytic do 44.8 1.5E+02 0.0032 33.8 10.3 26 979-1004 125-150 (360)
84 cd05575 STKc_SGK Catalytic dom 44.3 2.4E+02 0.0053 31.4 11.8 25 979-1003 120-144 (323)
85 cd05069 PTKc_Yes Catalytic dom 44.1 1.9E+02 0.0041 30.7 10.5 25 979-1003 126-150 (260)
86 KOG3087 Serine/threonine prote 42.8 1.6E+02 0.0034 32.9 9.5 104 882-1005 56-166 (229)
87 cd05626 STKc_LATS2 Catalytic d 42.7 2.5E+02 0.0054 32.3 11.9 24 979-1002 125-148 (381)
88 cd05073 PTKc_Hck Catalytic dom 42.6 2.6E+02 0.0057 29.7 11.3 26 979-1004 126-151 (260)
89 cd05144 RIO2_C RIO kinase fami 42.0 22 0.00048 37.0 3.1 29 979-1007 149-177 (198)
90 cd05598 STKc_LATS Catalytic do 41.5 2.7E+02 0.0058 31.8 11.8 24 979-1002 125-148 (376)
91 PF01633 Choline_kinase: Choli 41.4 2.9E+02 0.0064 29.2 11.4 29 974-1002 143-172 (211)
92 KOG0610 Putative serine/threon 41.2 76 0.0016 38.5 7.5 97 892-1006 129-230 (459)
93 PF06702 DUF1193: Protein of u 40.7 1.4E+02 0.0031 33.4 9.0 117 966-1112 92-211 (221)
94 cd05574 STKc_phototropin_like 39.9 3.7E+02 0.0079 29.6 12.2 29 978-1006 126-154 (316)
95 KOG0694 Serine/threonine prote 39.8 50 0.0011 42.0 5.9 118 865-1005 394-518 (694)
96 cd05042 PTKc_Aatyk Catalytic d 39.1 3.2E+02 0.007 29.1 11.4 26 979-1004 124-149 (269)
97 cd06607 STKc_TAO Catalytic dom 38.6 3.1E+02 0.0066 30.2 11.4 46 979-1025 139-184 (307)
98 cd05156 ChoK_euk Choline Kinas 38.6 21 0.00047 39.6 2.5 36 972-1007 177-216 (302)
99 cd05100 PTKc_FGFR3 Catalytic d 37.9 3.6E+02 0.0079 30.1 12.0 26 979-1004 158-183 (334)
100 PTZ00426 cAMP-dependent protei 36.5 60 0.0013 36.9 5.6 26 979-1004 155-180 (340)
101 cd05587 STKc_cPKC Catalytic do 36.0 3.4E+02 0.0073 30.3 11.3 25 979-1003 125-149 (324)
102 TIGR02172 Fb_sc_TIGR02172 Fibr 35.7 24 0.00052 38.5 2.2 24 978-1002 157-180 (226)
103 cd05119 RIO RIO kinase family, 35.3 24 0.00053 35.8 2.1 26 978-1004 138-163 (187)
104 cd05070 PTKc_Fyn_Yrk Catalytic 35.2 2.3E+02 0.005 30.0 9.4 26 979-1004 126-151 (260)
105 PF01636 APH: Phosphotransfera 35.0 21 0.00045 36.7 1.5 32 972-1003 164-196 (239)
106 cd05617 STKc_aPKC_zeta Catalyt 34.7 3.9E+02 0.0085 30.0 11.6 26 979-1004 120-145 (327)
107 cd05616 STKc_cPKC_beta Catalyt 34.2 3.4E+02 0.0074 30.3 11.0 26 979-1004 125-150 (323)
108 cd05586 STKc_Sck1_like Catalyt 33.9 4.5E+02 0.0098 29.3 11.9 25 979-1003 120-144 (330)
109 cd06608 STKc_myosinIII_like Ca 33.9 64 0.0014 34.0 5.0 26 979-1004 137-162 (275)
110 cd05601 STKc_CRIK Catalytic do 33.5 3.1E+02 0.0068 30.5 10.6 25 979-1003 126-150 (330)
111 PRK01723 3-deoxy-D-manno-octul 33.4 30 0.00065 38.0 2.5 26 979-1004 166-191 (239)
112 cd05098 PTKc_FGFR1 Catalytic d 33.4 3.2E+02 0.007 30.0 10.5 25 979-1003 164-188 (307)
113 KOG0598 Ribosomal protein S6 k 33.2 21 0.00045 42.2 1.3 34 970-1003 136-173 (357)
114 cd06625 STKc_MEKK3_like Cataly 32.6 3.6E+02 0.0078 28.4 10.3 24 979-1002 128-151 (263)
115 cd05153 HomoserineK_II Homoser 32.0 29 0.00062 38.3 2.1 29 975-1003 176-204 (296)
116 PRK12274 serine/threonine prot 32.0 33 0.00072 38.0 2.6 31 974-1004 108-141 (218)
117 cd05625 STKc_LATS1 Catalytic d 31.6 5.1E+02 0.011 29.7 12.1 25 979-1003 125-149 (382)
118 KOG0612 Rho-associated, coiled 30.5 1.3E+02 0.0029 40.6 7.7 56 972-1029 194-253 (1317)
119 cd05122 PKc_STE Catalytic doma 30.4 6.1E+02 0.013 26.0 13.9 51 976-1026 119-171 (253)
120 cd06638 STKc_myosinIIIA Cataly 30.0 1E+02 0.0022 33.2 5.8 27 979-1005 148-174 (286)
121 cd05068 PTKc_Frk_like Catalyti 30.0 5.1E+02 0.011 27.5 11.0 27 979-1005 127-153 (261)
122 smart00090 RIO RIO-like kinase 29.9 68 0.0015 35.3 4.5 25 979-1004 173-197 (237)
123 cd05154 ACAD10_11_like Acyl-Co 29.8 37 0.00079 35.0 2.3 31 973-1003 173-205 (223)
124 cd05628 STKc_NDR1 Catalytic do 29.7 4.1E+02 0.0088 30.3 10.8 25 979-1003 125-149 (363)
125 cd05591 STKc_nPKC_epsilon Cata 29.7 5.9E+02 0.013 28.4 11.9 25 979-1003 120-144 (321)
126 PF10707 YrbL-PhoP_reg: PhoP r 29.3 1.3E+02 0.0029 32.7 6.5 81 903-999 80-166 (199)
127 cd06635 STKc_TAO1 Catalytic do 29.2 3.1E+02 0.0066 30.5 9.5 48 979-1027 149-196 (317)
128 cd05120 APH_ChoK_like Aminogly 29.2 39 0.00084 31.7 2.2 25 979-1003 113-137 (155)
129 cd05600 STKc_Sid2p_Dbf2p Catal 29.1 4.4E+02 0.0096 29.5 10.8 26 979-1004 125-150 (333)
130 cd05111 PTK_HER3 Pseudokinase 28.8 7.7E+02 0.017 26.7 12.6 25 979-1003 133-157 (279)
131 TIGR00938 thrB_alt homoserine 28.6 38 0.00082 38.0 2.4 29 974-1002 187-215 (307)
132 cd05588 STKc_aPKC Catalytic do 28.4 6E+02 0.013 28.6 11.7 25 979-1003 120-144 (329)
133 cd05614 STKc_MSK2_N N-terminal 28.2 6.3E+02 0.014 28.2 11.8 25 979-1003 129-153 (332)
134 cd05083 PTKc_Chk Catalytic dom 27.5 7.5E+02 0.016 26.1 11.9 27 979-1005 124-150 (254)
135 cd06649 PKc_MEK2 Catalytic dom 27.4 6E+02 0.013 28.5 11.5 25 979-1003 128-152 (331)
136 KOG0577 Serine/threonine prote 26.9 1.4E+02 0.0029 38.2 6.6 49 979-1028 150-198 (948)
137 cd06627 STKc_Cdc7_like Catalyt 26.8 4.5E+02 0.0097 27.3 9.8 30 978-1007 122-151 (254)
138 cd05096 PTKc_DDR1 Catalytic do 26.4 6.2E+02 0.013 27.7 11.2 25 979-1003 162-186 (304)
139 PRK10271 thiK thiamine kinase; 26.4 48 0.001 36.0 2.5 53 954-1008 58-110 (188)
140 cd06614 STKc_PAK Catalytic dom 26.3 5.4E+02 0.012 27.8 10.6 27 979-1005 140-166 (286)
141 cd05108 PTKc_EGFR Catalytic do 26.3 9.1E+02 0.02 26.7 13.0 26 979-1004 133-158 (316)
142 cd08215 STKc_Nek Catalytic dom 26.2 6E+02 0.013 26.3 10.6 30 978-1007 126-155 (258)
143 cd05618 STKc_aPKC_iota Catalyt 26.0 7.6E+02 0.016 27.8 12.0 25 979-1003 120-144 (329)
144 PTZ00267 NIMA-related protein 25.9 1.1E+02 0.0024 36.7 5.7 26 979-1004 193-218 (478)
145 cd05086 PTKc_Aatyk2 Catalytic 25.8 1.5E+02 0.0032 31.9 6.1 25 979-1003 123-147 (268)
146 cd05155 APH_ChoK_like_1 Unchar 25.8 48 0.001 35.7 2.4 29 973-1002 163-192 (235)
147 cd05592 STKc_nPKC_theta_delta 25.7 6.3E+02 0.014 28.2 11.3 25 979-1003 120-144 (316)
148 KOG0696 Serine/threonine prote 25.4 40 0.00086 40.9 1.8 27 979-1005 474-500 (683)
149 cd05571 STKc_PKB Catalytic dom 25.3 8.4E+02 0.018 27.3 12.2 25 979-1003 119-143 (323)
150 cd05581 STKc_PDK1 Catalytic do 25.2 34 0.00073 36.3 1.1 29 978-1006 125-153 (280)
151 PRK05231 homoserine kinase; Pr 25.0 48 0.001 37.1 2.4 27 977-1003 190-216 (319)
152 cd05573 STKc_ROCK_NDR_like Cat 24.9 2.4E+02 0.0052 31.5 7.8 27 979-1005 125-151 (350)
153 COG1531 Uncharacterized protei 24.8 33 0.00072 32.5 0.9 19 592-610 57-76 (77)
154 cd05116 PTKc_Syk Catalytic dom 24.8 8.5E+02 0.018 25.8 11.6 26 979-1004 119-144 (257)
155 cd05594 STKc_PKB_alpha Catalyt 24.7 1E+03 0.022 26.6 12.9 25 979-1003 120-144 (325)
156 cd05580 STKc_PKA Catalytic dom 24.7 9.2E+02 0.02 26.2 14.4 47 978-1024 124-170 (290)
157 cd05622 STKc_ROCK1 Catalytic d 24.7 9.7E+02 0.021 27.7 12.8 49 979-1027 166-218 (371)
158 cd05088 PTKc_Tie2 Catalytic do 24.6 5.8E+02 0.013 28.1 10.6 26 979-1004 148-173 (303)
159 PF07804 HipA_C: HipA-like C-t 24.4 57 0.0012 29.9 2.3 30 961-990 38-67 (79)
160 PF06176 WaaY: Lipopolysacchar 24.0 55 0.0012 36.7 2.5 109 868-1002 56-181 (229)
161 cd05099 PTKc_FGFR4 Catalytic d 24.0 8.6E+02 0.019 26.9 11.8 27 979-1005 158-184 (314)
162 KOG0690 Serine/threonine prote 23.2 41 0.00088 39.8 1.3 37 969-1005 278-318 (516)
163 cd05612 STKc_PRKX_like Catalyt 23.2 78 0.0017 34.6 3.5 27 979-1005 125-151 (291)
164 cd06633 STKc_TAO3 Catalytic do 23.0 1.4E+02 0.003 33.2 5.4 48 979-1027 145-192 (313)
165 KOG0603 Ribosomal protein S6 k 23.0 50 0.0011 41.6 2.1 30 978-1007 438-468 (612)
166 cd05089 PTKc_Tie1 Catalytic do 22.8 7E+02 0.015 27.3 10.7 26 979-1004 143-168 (297)
167 cd05071 PTKc_Src Catalytic dom 22.8 7.9E+02 0.017 26.2 10.9 25 979-1003 126-150 (262)
168 cd06613 STKc_MAP4K3_like Catal 22.7 1.5E+02 0.0034 31.0 5.5 27 978-1004 124-150 (262)
169 cd05597 STKc_DMPK_like Catalyt 22.5 6.1E+02 0.013 28.5 10.4 50 979-1028 126-179 (331)
170 cd05157 ETNK_euk Ethanolamine 22.5 65 0.0014 34.2 2.6 35 973-1007 169-204 (235)
171 cd05110 PTKc_HER4 Catalytic do 22.3 1.1E+03 0.023 26.0 12.7 26 979-1004 133-158 (303)
172 cd06639 STKc_myosinIIIB Cataly 22.2 1.5E+02 0.0033 32.0 5.5 26 979-1004 152-177 (291)
173 cd05593 STKc_PKB_gamma Catalyt 21.9 9.9E+02 0.021 26.9 11.9 25 979-1003 119-143 (328)
174 cd08224 STKc_Nek6_Nek7 Catalyt 21.7 9.5E+02 0.021 25.2 11.9 25 979-1003 130-154 (267)
175 PF00069 Pkinase: Protein kina 21.6 83 0.0018 32.9 3.2 47 979-1025 122-171 (260)
176 cd05570 STKc_PKC Catalytic dom 21.5 8.1E+02 0.018 27.3 11.1 25 979-1003 120-144 (318)
177 KOG2001 Gamma-tubulin complex, 21.5 2.6E+02 0.0055 36.0 7.6 75 1040-1122 209-283 (734)
178 cd06617 PKc_MKK3_6 Catalytic d 21.1 6.9E+02 0.015 26.7 10.1 25 979-1003 128-152 (283)
179 cd08217 STKc_Nek2 Catalytic do 21.1 9.5E+02 0.021 25.0 11.3 29 978-1006 133-161 (265)
180 KOG0983 Mitogen-activated prot 20.9 65 0.0014 37.5 2.3 21 981-1001 218-238 (391)
181 cd05052 PTKc_Abl Catalytic dom 20.8 1E+03 0.022 25.3 11.9 28 979-1006 128-155 (263)
182 cd05062 PTKc_IGF-1R Catalytic 20.8 7E+02 0.015 26.8 10.1 25 979-1003 143-167 (277)
183 cd05039 PTKc_Csk_like Catalyti 20.8 8.7E+02 0.019 25.5 10.7 27 979-1005 126-152 (256)
184 TIGR02906 spore_CotS spore coa 20.8 66 0.0014 35.6 2.4 29 973-1002 186-214 (313)
185 cd06657 STKc_PAK4 Catalytic do 20.7 1.1E+02 0.0024 33.6 4.0 27 978-1004 139-165 (292)
186 cd06634 STKc_TAO2 Catalytic do 20.7 4.6E+02 0.01 28.9 8.9 48 979-1027 139-186 (308)
187 cd08223 STKc_Nek4 Catalytic do 20.4 9.5E+02 0.021 25.1 10.8 25 979-1003 126-150 (257)
188 PRK10345 hypothetical protein; 20.0 2.3E+02 0.005 30.9 6.2 84 899-999 60-153 (210)
No 1
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-149 Score=1291.25 Aligned_cols=833 Identities=53% Similarity=0.794 Sum_probs=750.2
Q ss_pred hhhhhhHHhhhccCCCccccccCchhhHHHHhhcCCCCCcccccChhhHHHHHhhccCCCccccccccccccccchhHHH
Q 045995 243 EKDGFFKRLLRDSRGEDEEMTSSSEGFFKRLLRDSKGDDDELMSSSEGFFKKLFRDSKSDFDDKSVSKSLEDDEKDGFFK 322 (1129)
Q Consensus 243 ~~~gffkrl~rd~~~~~~~~~~~~egffkr~l~d~~~~~~e~~~~~egffkrl~rd~k~~~~~~~~~~~~~~~~~~gff~ 322 (1129)
-++|||||+|.|++.+++..+.++||||+| |.+|++..++++++++|+|+++.+|.+.+++.. --||+
T Consensus 4 ~~~~~f~~~~~dn~~e~~~~tns~e~~~~r-~~~s~~~~~~Ls~~~~~~~~~~v~~~~~e~~~~-----------~~f~~ 71 (847)
T KOG0903|consen 4 NSEGFFKVLLKDNKSEPEPITNSSEGFFKR-LGESKGPASELSSSSDGVFKRLVRDPLVEEEAL-----------GAFFK 71 (847)
T ss_pred chhhhHHHHhhcccCCCCCCCCCCcccccc-ccccCCchhhhhHhhhhhhhhhccChhhhHhhh-----------hHHHH
Confidence 468999999999999999999999999999 568899999999999999999999999877633 23999
Q ss_pred HHhhhhhccccCCCCCCCCc-----cchhhhhhcCCCCchhhhhhhhHHHhhhhhccccCCCCCCcchhhhccccccCCC
Q 045995 323 KFFKEKFEDKKDGSHRNEGE-----EVVNIEEKCSKSTEDDEKEGFFKKFFKEKFEDKKDGSHRNEDEEVVNTEEKCSKS 397 (1129)
Q Consensus 323 ~~~~~~~~~~~~~~~~~e~~-----~~~~~~~~~~~~~ed~~kegffrk~fk~k~edkkdg~~k~~~~~~~~~~~~~~~~ 397 (1129)
++|+.++.++.+.+.++||+ -....+.+++....|.+|.||.+++||++++|++-+.++++..+++.. +...
T Consensus 72 ~~~~~~k~~~~~~~~ns~~~~~~~~~~s~~~~~v~~~l~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~g~~~~---~~~~ 148 (847)
T KOG0903|consen 72 ELLRKSKLEHEEVNKNSEGTFLELFNSSKEDDKVPSELDDEDKDGFLKKLFREKHDEKRLALEKNEANGTQYI---DSRS 148 (847)
T ss_pred HHHhhhhhhhcccccccccchHHHHhhcccCCCCchhhcCccchhhHHHHhcCCChHhhhhhhhcccCCcEEE---eccc
Confidence 99999999999999999998 222367788999999999999999999999999999999999887744 4447
Q ss_pred CcchhhhhhHHHhhhcccccccCCCCCCCCCCCCccccCCchhhHHHHhhhcCCCCccccccccCCCCCCcccCCCCchH
Q 045995 398 TEDDEKEGFFRKFFKEKFEDKKDGNEKNDEGNSGIEEEESSDFSLFRRLFRVHPEDPKRAAASENSNSGGMFESSPGTEN 477 (1129)
Q Consensus 398 ~e~~~~~~~fr~lf~~~~ed~k~~~~~~~~~~~~~~e~~~~~~~~frrlfr~~p~~~~~~~~~~~~~~~~~~e~~~~~~~ 477 (1129)
.+...+.++|.++|+++-.|+|. ..+..+++- ..-..+..+..||||||-||+|.+.+..+ .||+||++|
T Consensus 149 ~~~~~k~~~l~~l~~~k~~d~~~-I~~~~~~~~-~~~~~~~~~~~grr~~~~~~ed~~~~~~~--------~~s~p~~~n 218 (847)
T KOG0903|consen 149 GLSTPKQKYLKNLFKEKLYDGKN-ISKADSYSL-SEKDGSDEFSLGRRLFRFHPEDVDFTLEE--------VESSPGLEN 218 (847)
T ss_pred cCCCccchhHHHHHHHHhccccc-cccccchhh-hccCcchhhhhhhhhhhcCchhccccccc--------cccCcchhh
Confidence 78899999999999999999885 222222222 12356778999999999999999999887 899999999
Q ss_pred HHHHhhhccCCCccchhccccccccccCCCCCcccccccCCCCCCCcccHHHHHhhhhhhHHHHHHHHhhhcccccccCC
Q 045995 478 FFRKLFRDRDRSVEDSELFGSKKQREKRPGSPKQQNEKSNSKPPLPVNIASQFRKGAYHESLDFVMSLCDTSYGLVDIFP 557 (1129)
Q Consensus 478 ff~~lf~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~f~~e~~Fv~aL~~IS~RLv~i~P 557 (1129)
||+++++|++++||+|| |+|++.+++.|++++..++..++++++|.+|+.++|++||+++++|+.+||.||+-|+.+||
T Consensus 219 ~~~~~~~~~~~sve~s~-~~s~r~~~~~~f~~~~a~~~~s~~id~~~~t~~~~R~~~~~~~lef~~aL~~~sy~~v~~~p 297 (847)
T KOG0903|consen 219 FFRKLSEDSSDSVEDSE-FGSKRLKESEPFSPKEANSSLSTSIDLPQLTARQKRKGYLREELEFVFALPPLSYLLVDIVP 297 (847)
T ss_pred hhhhhhhccccccccCc-ccceeeeccccCChhhhhhccccCCCchhHHHHHHhccchhHHHHHHHhhchhhhhcccccc
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHhhhhhcccCCCceeccCCCCceEEEecCccchhhccccCCCCeEEEEEEecCCCCCCCCCCCCCc
Q 045995 558 VEDRKPALRESLAEINLHIAESQNMGGICFPMGKGLYRVVHIPEDEAVLLNSREKAPYMICVEVLKCETPSNAKDTSGPQ 637 (1129)
Q Consensus 558 keaR~saLraELa~lN~~Lp~~~~~~~v~~Pl~~~~hRIVRIpp~EavVLNSaERaPyLl~VEVL~~d~~f~~~~~~~~~ 637 (1129)
.+||.++||+||+++|.+|....+...+|+|++.++||||+||.+|+++.|+.+.+||||+||||+.++|+.+..+.+..
T Consensus 298 ~~ar~~alr~el~~~n~~la~~~i~~~~c~~k~~~~~rv~~~~~~~~ilns~~~~~~~li~ve~l~~el~~~~~~~~~~~ 377 (847)
T KOG0903|consen 298 AEARSSALREELALRNCDLAEAEITLLICFPKGVSNKRVVNIPEEESILNSSSEPPYYLIEVEVLKAELPRGLRSTTNEM 377 (847)
T ss_pred hHhhhhhhhHHHHhhccchhhheeccccccccCCCcceeecccchhhhhcccccCcchhhhHHHHHhhcCcchhhccchh
Confidence 99999999999999999996666667899999999999999999555555555555559999999999999999999999
Q ss_pred ccCCCCccCCCCCCCCCCCCC-CCCCccchhhhccCCccccchhhHHHHhhhhcccccccceeeccccccccccccCCCC
Q 045995 638 KLSRGGIPLANGDAFLPKPPP-WAYPLWTAQEAYRNSTDRMSESTAQAIDQAMTHKSDAKVKLVNLSLSVEKHVHIQSKN 716 (1129)
Q Consensus 638 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1129)
+++.++..+++.++.++++|+ |.++.|+.+++|++++++++-|..+.++..+...+...++.+++++..+....+..-.
T Consensus 378 k~~k~~~~~~~~~~~~~k~~~~~l~~~~t~~~~~~~~a~~~sls~~~~~~p~~~~~~~~e~~~~~~~l~~~~~~~~~~~s 457 (847)
T KOG0903|consen 378 KLSKGGSNLANLDALLQKPPRFWLAPLDTTSEVYRNSAERMSLSNSAAIIPRLTYVSKLEVKLVNVSLLVEDLDASNTLS 457 (847)
T ss_pred hhhhcccchhhhhhhhccCCcccccccccchhhhccccccccccchhhhcchheecchheeeeeheecccccccccccce
Confidence 999999999999999999999 9999999999999999999999888899888888766788888888655332111100
Q ss_pred CCCCcccCCCccCCCCCCccccCCCCCCCCCCCcccccccchhHHhhhhhccCCCcchhhhhhcCCCCccccccCCchhh
Q 045995 717 PDAPVTQSGINFSGMLPAAVHTTSNSNQIGEGVSHTSRAINDLEWVRVVLTADPGVRMEDIEYQGPPRRKEHRRVPSTVA 796 (1129)
Q Consensus 717 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~m~~v~~~~~~~~k~~~~~p~~~~ 796 (1129)
..|+- ..+..+ ....++..+|+.....++++..|+.+.....+++|.|++....++
T Consensus 458 -----~~S~~-------------~~~~~~------~~~l~~s~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~~~~~~~i~ 513 (847)
T KOG0903|consen 458 -----LLSEI-------------NVVLCG------SEGLMNSLEWVSNVDNADEALGVESIEAPASPRPKEHRRFADNIA 513 (847)
T ss_pred -----ecccc-------------cccccc------ccccccccchhhhhhhhhhhhccccccccCCCccchhhhhhhhhh
Confidence 00000 011111 122367888999888888888889999999999999999999999
Q ss_pred HHHHHHHHhcCCCC----CCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhheeeeecccCCCCceEEEEEe
Q 045995 797 IEEVKAAAAKGEAP----PGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPGWDLRSVIVK 872 (1129)
Q Consensus 797 ~~~~~~~~~~~~~p----~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~g~~~svI~K 872 (1129)
..++.++.+++..| +..+++++++..++.++..+|..-+++++.++|.|..|++|||+.|+||+++||++.+||||
T Consensus 514 ~~~~~~~~~~~~~p~~~~~~~~ik~~q~~~~~~qp~e~~~~~d~s~a~~~E~W~~Kk~RIRktS~Yg~~pnWdL~SVIVK 593 (847)
T KOG0903|consen 514 QLDVRAAASKGEKPMGCRVGSDIKGAQSESSDTQPVENGDSGDPSAALSGEDWAEKKARIRKTSPYGHLPNWDLRSVIVK 593 (847)
T ss_pred ccccchhhhcccCCcccccccchhhhccccccccchhhCCCCCcchhhccccHHHHHHHHhccCccccCCCcceEEEeee
Confidence 99999988888877 56677888888888888888777789999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCCCcHHHHHHHHhCCCC
Q 045995 873 SGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNITSLRDFFVAKYQENS 952 (1129)
Q Consensus 873 ~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i~sL~~~f~~~f~~~s 952 (1129)
+||||||+.++.|+|..|..||+++|++|||+||+|+.||.++||||+|+|+.|||+|+++++++..|.+||...+..++
T Consensus 594 tGdDLrQE~fA~Qli~~f~~IW~EegvplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l~~~~~l~~F~~~~g~~NS 673 (847)
T KOG0903|consen 594 TGDDLRQELFAYQLISAFKDIWQEEGVPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRLPNLASLRHFFAAFGKPNS 673 (847)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCcceeeeEEEEEEecCccceeeccchhhHHHHHHhcchhhhHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888877766789
Q ss_pred hHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCCCCCCCCCCccCcHHHHHHHcCCCC
Q 045995 953 PSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMDSDAE 1032 (1129)
Q Consensus 953 ~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemvevMG~g~e 1032 (1129)
+.|..|++||+.||||||+|||+|||+||||||||||.+||||||||||||+++|++++||.+|||||.|++++||
T Consensus 674 ~~yk~AQrNFvqSlagYSLvcYlLQvKDRHNGNILiD~EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmg---- 749 (847)
T KOG0903|consen 674 EKYKSAQRNFVQSLAGYSLVCYLLQVKDRHNGNILIDEEGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMG---- 749 (847)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEecCCCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc-CCCCCCCCChhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 045995 1033 GLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQD-SGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLD 1111 (1129)
Q Consensus 1033 G~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~-s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~ 1111 (1129)
|++|++|++|+.+|.++|.++|||++.|+.|+++|++ +++|||.+|+.+|++|++||+|+|||+|+..+|+.||+.|++
T Consensus 750 G~~~d~FdyfK~L~l~gf~a~RKhadrIv~lvEiMq~~S~~pCF~aG~~Ti~nL~~RFhLslTEeq~~~lV~~LI~kS~~ 829 (847)
T KOG0903|consen 750 GLDSDMFDYFKSLMLQGFMALRKHADRIVLLVEIMQDGSGMPCFRAGERTIQNLRQRFHLSLTEEQCQDLVLSLISKSLD 829 (847)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccChHHHHHHHHHhcccccHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHHHhcCC
Q 045995 1112 AWRTRQYDYYQRVLNGIL 1129 (1129)
Q Consensus 1112 s~~Tr~YD~fQ~~tnGI~ 1129 (1129)
+|+||+||+|||+||||+
T Consensus 830 S~~TrlYD~fQyitnGI~ 847 (847)
T KOG0903|consen 830 SITTRLYDSFQYITNGIY 847 (847)
T ss_pred chhhhhhHHHHHHhcccC
Confidence 999999999999999997
No 2
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=1e-81 Score=689.41 Aligned_cols=289 Identities=63% Similarity=1.033 Sum_probs=277.8
Q ss_pred chhccccchHHHHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCc
Q 045995 837 TDALSGELWEVKKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTA 916 (1129)
Q Consensus 837 s~~~~selw~~kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~G 916 (1129)
+...+||.|..+++|||+.|+||+.++|+.+++|+|+|||||||+++||+|++||.||++++++++|+||+|+|||+++|
T Consensus 3 ~~~~~~e~~~~~~~r~r~~s~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~~l~l~l~~Y~vip~~~~~G 82 (293)
T cd05168 3 SAAPFGEDWEEKKERIRKSSPYGHLKSWDLRSVIVKTGDDLRQELLAMQLIQQFDRIFKEEGLPLWLRPYEILVTSSNSG 82 (293)
T ss_pred cccccCCCHHHHHHHhhhcCccCcCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCceeeeEEEEEccCCce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCchhHHHHHHhCC-CCCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEE
Q 045995 917 LIETIYDTASLHSIKSRYP-NITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHII 995 (1129)
Q Consensus 917 LIE~V~ns~SL~~I~k~~~-~i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lf 995 (1129)
|||||+|+.|+++|+++++ ...+|.+||.+.|+.++..|..|++||++|||||||+|||||||||||+||||+.+||+|
T Consensus 83 lIE~V~ns~tl~~i~k~~~~~~~~l~~~f~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YvLGigDRH~~NILi~~~G~li 162 (293)
T cd05168 83 LIETIPDTVSIDSLKKKLTSKFKSLLDFFKKTFGDPSERFREAQKNFIESLAGYSLICYLLQIKDRHNGNILIDNDGHII 162 (293)
T ss_pred eEEEeCCchhHHHHHHHhccCCchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEcCCCCEE
Confidence 9999999999999999885 256899999999987777888999999999999999999999999999999999999999
Q ss_pred EeeccccccCCCCCCCCCCCCccCcHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcC-CCCC
Q 045995 996 HIDFGFMLSNSPGGVNFESAPFKLTRELLEVMDSDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDS-GFPC 1074 (1129)
Q Consensus 996 HIDFGfILg~~p~~~~~E~vPFRLTkemvevMG~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s-~lPc 1074 (1129)
||||||+||.+|+++.||+||||||++|+++|| |.+|+.|+.|+.+|+.||.+||+|++.|++++++|+++ ++||
T Consensus 163 HIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mG----g~~s~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~ 238 (293)
T cd05168 163 HIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMG----GVNSDLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPC 238 (293)
T ss_pred EEehHHhhcccccCCCCCCCCEEecHHHHHHhC----CCCCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCcc
Confidence 999999999999999999999999999999999 77788999999999999999999999999999999987 9999
Q ss_pred CCCChhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhcCC
Q 045995 1075 FKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQRVLNGIL 1129 (1129)
Q Consensus 1075 f~~~~~~I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~s~~Tr~YD~fQ~~tnGI~ 1129 (1129)
|.+...++.+|++||++++++++|..+|++||++|+++|+|++||+||+++||||
T Consensus 239 f~~~~~~i~~l~~r~~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~gi~ 293 (293)
T cd05168 239 FKAGEFTIQQLRDRFMLNLTEEQLEVFVDELINQSLDNWRTRLYDKFQYLTNGIL 293 (293)
T ss_pred ccCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCC
Confidence 9854578999999999999999999999999999999999999999999999997
No 3
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=3.5e-78 Score=660.53 Aligned_cols=280 Identities=44% Similarity=0.726 Sum_probs=268.8
Q ss_pred ccchHHHHHhheeeeecccCCCCc-----eEEEEEecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCc
Q 045995 842 GELWEVKKERIRKASAYGKSPGWD-----LRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTA 916 (1129)
Q Consensus 842 selw~~kk~RpRk~S~~G~~~~g~-----~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~G 916 (1129)
-+.|..|..|+++.+|+|...+|. .+.+|||+|||||||+++||+|++||+||++++++|+|+||+|||||+++|
T Consensus 3 ~~~~~~k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~l~l~l~~Y~vi~~s~~~G 82 (289)
T cd00893 3 KIYISPKILQSALKIPYLELKKLTDSTLINSEFIVKCGDDLRQDILATQIITELQKIFELMFLDLWLNPYLVLPVSKTGG 82 (289)
T ss_pred cccccchHHHHhhcCchhhccCccCCCCeeEEEEEECCCcccHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCce
Confidence 367999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCchhHHHHHHhCCCCCcHHHHHHHHhCC-CChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEE
Q 045995 917 LIETIYDTASLHSIKSRYPNITSLRDFFVAKYQE-NSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHII 995 (1129)
Q Consensus 917 LIE~V~ns~SL~~I~k~~~~i~sL~~~f~~~f~~-~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lf 995 (1129)
|||||+|+.|+++|++++. .++.+||.+.|+. .++.|..|+.||++|||||||+|||||||||||+||||+.+||+|
T Consensus 83 lIE~V~ns~tl~~i~~~~~--~~l~~~~~~~~~~~~~~~~~~a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~~G~li 160 (289)
T cd00893 83 IIEFIPNSISIHEIKKQQI--NSLYDYFLELYGSYTTEAFLQARYNFIESMAGYSLLCYLLQIKDRHNGNILLDSDGHII 160 (289)
T ss_pred eEEEeCCchhHHHHHHhcc--ccHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCEE
Confidence 9999999999999999873 5799999999985 456788999999999999999999999999999999999999999
Q ss_pred EeeccccccCCCCC-CCCCCCCccCcHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCC
Q 045995 996 HIDFGFMLSNSPGG-VNFESAPFKLTRELLEVMDSDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPC 1074 (1129)
Q Consensus 996 HIDFGfILg~~p~~-~~~E~vPFRLTkemvevMG~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPc 1074 (1129)
|||||||||++|++ +.||+||||||++|+++|| |.+|+.|++|+.+|+.||.+||+|++.|++|+++|+++++||
T Consensus 161 HIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mG----g~~s~~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~ 236 (289)
T cd00893 161 HIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMG----GKKSDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPC 236 (289)
T ss_pred EEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhC----CCCChhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcc
Confidence 99999999999998 8899999999999999999 777899999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhcCC
Q 045995 1075 FKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQRVLNGIL 1129 (1129)
Q Consensus 1075 f~~~~~~I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~s~~Tr~YD~fQ~~tnGI~ 1129 (1129)
|+ ..++.+|++||++++|+++|.+++.++|++|+++|+|++||+|||+||||-
T Consensus 237 ~~--~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~gi~ 289 (289)
T cd00893 237 FR--GSTIKKLKERLCLNMSEKEAINTVMKKIDSSYNSITTKLYDKVQYYQNGII 289 (289)
T ss_pred cC--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCC
Confidence 98 478999999999999999999999999999999999999999999999993
No 4
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=5e-78 Score=664.45 Aligned_cols=293 Identities=43% Similarity=0.731 Sum_probs=269.0
Q ss_pred CCCccccCCCCCcchhccccchHHHHHhheeeeecccCCCC-----------ceEEEEEecCCchhhHHHHHHHHHHHHH
Q 045995 824 DAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPGW-----------DLRSVIVKSGDDCRQEHLAVQLISHFYD 892 (1129)
Q Consensus 824 ~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~g-----------~~~svI~K~GDDLRQDqL~mQLi~lmn~ 892 (1129)
+|+.+++|++++.+..++|.. ..|-.+++....+++ ..+.+|||+|||||||+++||+|++|++
T Consensus 5 ~P~~~v~~i~~~~~~~~~S~a-----k~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~ 79 (311)
T cd05167 5 NPDYVIVGIDYKSGTPLQSHA-----KAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKN 79 (311)
T ss_pred CCceEEEEEEccccEEeccCC-----CCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 899999999999988887752 123334444333332 3699999999999999999999999999
Q ss_pred HHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCCCcHHHHHHHHhCC-CChHHHHHHHHHHHhhhhHHH
Q 045995 893 IFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNITSLRDFFVAKYQE-NSPSFKLAQRNFVESMAGYSL 971 (1129)
Q Consensus 893 Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i~sL~~~f~~~f~~-~s~~f~~ar~nFirSlAgYSV 971 (1129)
||++++++|||+||+|+|||+++||||||+|+.|+++|++... ..|.+||.++|++ .+..|..|++||++|||||||
T Consensus 80 i~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~~--~~l~~~f~~~~~~~~~~~~~~a~~nF~~S~Agysv 157 (311)
T cd05167 80 IFQSAGLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTTD--NGLYEYFTSKYGDESSLAFQKARENFIRSMAAYSL 157 (311)
T ss_pred HHHHCCCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhcc--cHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998754 5799999999975 456788999999999999999
Q ss_pred HHhhhccCCCCCCcceecCCCCEEEeeccccccCCCCC-CCCCCCCccCcHHHHHHHcCCCCCCC-chhHHHHHHHHHHH
Q 045995 972 VCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGG-VNFESAPFKLTRELLEVMDSDAEGLP-SEFFDYFKVLCIQG 1049 (1129)
Q Consensus 972 vtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~~-~~~E~vPFRLTkemvevMG~g~eG~~-Se~f~~Fr~lc~~a 1049 (1129)
+|||||||||||+||||+.+||+||||||||||++|++ +.||+||||||++|+++|| |.. |+.|++|+.+|++|
T Consensus 158 ~tYiLgigDRHn~NILid~~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT~emv~~mG----g~~~s~~f~~F~~~~~~~ 233 (311)
T cd05167 158 ISYLLQIKDRHNGNIMIDDDGHIIHIDFGFIFEISPGGNLKFESAPFKLTKEMVQIMG----GSMEATPFKWFVELCVRA 233 (311)
T ss_pred HHHHhhccccCccceEEcCCCCEEEEeeHHhhccCCCCCCCcCCCCEeecHHHHHHhC----CCCcchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 8899999999999999999 655 78899999999999
Q ss_pred HHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhcCC
Q 045995 1050 FLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQRVLNGIL 1129 (1129)
Q Consensus 1050 f~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~s~~Tr~YD~fQ~~tnGI~ 1129 (1129)
|.+||+|++.|++|+++|+++++|||+ ..+|.+|++||+|++||++|.++|.++|.+|+++|+|++||+||++||||.
T Consensus 234 ~~~lR~~~~~il~l~~lm~~s~lp~~~--~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~gi~ 311 (311)
T cd05167 234 FLAVRPYMDEIVSLVELMLDSGLPCFR--GDTIKNLRQRFAPEKSEREAAEFMLSLIAESYEKFRTKGYDQFQYYQNGIP 311 (311)
T ss_pred HHHHHcCHHHHHHHHHHHHcCCchhhh--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCC
Confidence 999999999999999999999999998 478999999999999999999999999999999999999999999999995
No 5
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=3.4e-76 Score=657.23 Aligned_cols=299 Identities=26% Similarity=0.412 Sum_probs=274.6
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHH
Q 045995 810 PPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISH 889 (1129)
Q Consensus 810 p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~l 889 (1129)
+..||+ +|+++++|++++.+..+.|.. +|.++++.+..+.++.|.+|||.|||||||+++||+|++
T Consensus 49 ~~~lPl--------dP~~~v~~i~~~~~~v~~S~~------~Pl~l~f~~~d~~~~~~~~IfK~GDDLRQD~l~lQli~l 114 (354)
T cd00895 49 SCRLPL--------SPSLLVKGIVPRDCSYFNSNA------VPLKLSFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRI 114 (354)
T ss_pred CCcCCC--------CCCeEEEEEEcCceEEecccC------CCeEEEEEecCCCCCeEEEEEeCCCCccHHHHHHHHHHH
Confidence 456777 899999999999998887765 677888888877789999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCC-----CcHHHHHHHHhCCCChHHHHHHHHHHH
Q 045995 890 FYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNI-----TSLRDFFVAKYQENSPSFKLAQRNFVE 964 (1129)
Q Consensus 890 mn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i-----~sL~~~f~~~f~~~s~~f~~ar~nFir 964 (1129)
|++||+++|+|||++||+|+|||.++|+||||+|+.|+++|++.++.. .+|.+||.+.+ +....|..|++||++
T Consensus 115 md~i~~~~~ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~~g~~g~~~~~~l~~~l~~~~-~~~~~~~~a~~nFi~ 193 (354)
T cd00895 115 MNKIWVQEGLDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVEHGVTGSFKDRPLADWLQKHN-PTEDEYEKAVENFIY 193 (354)
T ss_pred HHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChhhHHHHHHHhCcCcccccchHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876432 37889997764 455678899999999
Q ss_pred hhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCC--CCCCCCCCCccCcHHHHHHHcCCCCCCCchhHHHH
Q 045995 965 SMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSP--GGVNFESAPFKLTRELLEVMDSDAEGLPSEFFDYF 1042 (1129)
Q Consensus 965 SlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p--~~~~~E~vPFRLTkemvevMG~g~eG~~Se~f~~F 1042 (1129)
|||||||+||||||||||||||||+.+||+||||||||||++| +++++|++||+||++|+++||+ +|.+|+.|++|
T Consensus 194 S~AgYsV~tYiLgIgDRHndNImi~~~GhlfHIDFG~iLg~~~~~g~~~re~~PF~Lt~emv~vm~g--g~~~S~~f~~F 271 (354)
T cd00895 194 SCAGCCVATYVLGICDRHNDNIMLKTTGHMFHIDFGRFLGHAQMFGNIKRDRAPFVFTSDMAYVING--GDKPSSRFHDF 271 (354)
T ss_pred HHHHHHHHHHHccccccCCCceeEcCCCCEEEEeeHHhcCCCcccCCCCcCCCCccccHHHHHHhcC--CCCCChhHHHH
Confidence 9999999999999999999999999999999999999999986 4478999999999999999973 25678999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 045995 1043 KVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQ 1122 (1129)
Q Consensus 1043 r~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~s~~Tr~YD~fQ 1122 (1129)
+.+|++||++||+|+++|++|+++|++++|||++. ..+|.+|++||+|++||++|..||.++|++|+++|+|++||.+|
T Consensus 272 ~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~-~~~i~~l~~rf~l~~se~eA~~~f~~lI~~s~~s~~t~~~~~~H 350 (354)
T cd00895 272 VDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSD-LEDLKYVYDALRPQDTEADATTYFTRLIESSLGSVATKLNFFIH 350 (354)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCc-chHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Confidence 99999999999999999999999999999999985 46899999999999999999999999999999999999999999
Q ss_pred HHHh
Q 045995 1123 RVLN 1126 (1129)
Q Consensus 1123 ~~tn 1126 (1129)
.+.|
T Consensus 351 ~~aq 354 (354)
T cd00895 351 NLAQ 354 (354)
T ss_pred HhcC
Confidence 8764
No 6
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=2.5e-75 Score=650.14 Aligned_cols=310 Identities=26% Similarity=0.412 Sum_probs=277.2
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhheeeeecccCCCCceEEEEEecCCc
Q 045995 797 IEEVKAAAAKGEAPPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPGWDLRSVIVKSGDD 876 (1129)
Q Consensus 797 ~~~~~~~~~~~~~p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~g~~~svI~K~GDD 876 (1129)
+++++..++. .+.+||| +|.+.++|++++.+..+.|. ++|+++++.+..+.|+.|.+|||+|||
T Consensus 37 ~~~l~~~~~~--~~~~lPl--------~p~~~~~~~~~~~c~v~~S~------~~Pl~l~f~~~d~~g~~~~~ifK~gDD 100 (353)
T cd05176 37 MERVQSFFQK--NKCRLPL--------SPSLVAKELNIKVCSFFSSN------AVPLKIALVNADPLGEEINVMFKVGED 100 (353)
T ss_pred HHHHHhhcCC--CCCCCCC--------CcceeEccEehheeEEeccc------CCceEEEEEccCCCCCEEEEEEeCCCC
Confidence 4555554432 2467787 78999999999988777654 588999999987779999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCC-----CcHHHHHHHHhCCC
Q 045995 877 CRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNI-----TSLRDFFVAKYQEN 951 (1129)
Q Consensus 877 LRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i-----~sL~~~f~~~f~~~ 951 (1129)
||||+++||+|++|++||++++++||++||+|+|||.++||||||+|+.|+++|++.++.. ..|.+|+.+ +++.
T Consensus 101 LRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~~~~~~l~~~l~~-~~~~ 179 (353)
T cd05176 101 LRQDMLALQMIKIMDKIWLQEGLDLRMVIFKCLSTGKDRGMVELVPASETLRKIQVEYGVTGSFKDKPLAEWLRK-YNPA 179 (353)
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEcCCCceEEEEeCCcHhHHHHHHHhCcCCccccchHHHHHHH-hCCC
Confidence 9999999999999999999999999999999999999999999999999999999887532 357777765 5555
Q ss_pred ChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCC--CCCCCCCCccCcHHHHHHHcC
Q 045995 952 SPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPG--GVNFESAPFKLTRELLEVMDS 1029 (1129)
Q Consensus 952 s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~--~~~~E~vPFRLTkemvevMG~ 1029 (1129)
...|..|++||++|||||||+||||||||||||||||+.+||+||||||||||++|. ++.+|++|||||++|+++||+
T Consensus 180 ~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~~~Ghl~HIDFG~ilg~~~~~g~~~~e~~PFkLT~emv~~mgG 259 (353)
T cd05176 180 EEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLRSTGHMFHIDFGKFLGHAQMFGSFKRDRAPFVLTSDMAYVING 259 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEcCCCCEEEEeeHHhcCCCccccCCCCCCCCeeecHHHHHHhcC
Confidence 667889999999999999999999999999999999999999999999999999984 367999999999999999982
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 045995 1030 DAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSS 1109 (1129)
Q Consensus 1030 g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~v~~LI~~S 1109 (1129)
+ ..+|+.|++|+.+|+.||.+||+|+++|++|+++|++++|||+++ ..++++|++||+|++|++||..||.++|++|
T Consensus 260 ~--~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~-~~~i~~l~~r~~l~~sd~ea~~~f~~lI~~s 336 (353)
T cd05176 260 G--EKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTG-VQDLKYVYDALQPQTTDAEATIFFTRLIESS 336 (353)
T ss_pred C--CCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCC-chHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 1 123568999999999999999999999999999999999999985 3589999999999999999999999999999
Q ss_pred hhchhhhhHHHHHHHHh
Q 045995 1110 LDAWRTRQYDYYQRVLN 1126 (1129)
Q Consensus 1110 ~~s~~Tr~YD~fQ~~tn 1126 (1129)
+++|+|+++|++|.+.|
T Consensus 337 ~~s~~t~~~~~~H~~aq 353 (353)
T cd05176 337 LGSVATKFNFFIHNLAQ 353 (353)
T ss_pred HhchhHhHHHHHHHhcC
Confidence 99999999999998764
No 7
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=2.7e-74 Score=645.80 Aligned_cols=312 Identities=27% Similarity=0.476 Sum_probs=277.5
Q ss_pred HHHHHHHHhcCC-----CCCCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhheeeeecccCC---CCceEE
Q 045995 797 IEEVKAAAAKGE-----APPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSP---GWDLRS 868 (1129)
Q Consensus 797 ~~~~~~~~~~~~-----~p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~---~g~~~s 868 (1129)
.+.+++.+.+.. .+.++|+ +|+++++||+++.+.++. ++++|+++.+.+..+ +|+.|.
T Consensus 35 ~~~l~~~l~~~~~~~~~~~~~lPl--------~P~~~v~~i~~~~~~v~~------Sk~~P~~l~f~~~d~~~~~g~~~~ 100 (366)
T cd05165 35 KSQLEQVLRQLANLDLLQSFQSPL--------NPSLKLGELRIEKCKVMD------SKKKPLWLVFENADPTALSNENVG 100 (366)
T ss_pred HHHHHHHHcccchhcccccCCCCC--------CCceeEeeeecCceEEeh------hhcCCcEEEEEccCcccccCCcee
Confidence 455666664431 3456676 899999999999887654 346899999999865 478999
Q ss_pred EEEecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCC-------CcHH
Q 045995 869 VIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNI-------TSLR 941 (1129)
Q Consensus 869 vI~K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i-------~sL~ 941 (1129)
+|||+|||||||+++||+|++||.||++++++|+|+||+|+|||.++||||||+|+.|+++|++.++.. ..|.
T Consensus 101 ~IfK~gDDLRQD~l~lQli~lm~~i~~~~~ldL~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~~~~~f~~~~l~ 180 (366)
T cd05165 101 IIFKNGDDLRQDMLTLQILRIMDSIWKEEGLDLRMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGGNATAAFKKEALL 180 (366)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEecCCceEEEEeCCchhHHHHHHhcccccccccCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887532 2588
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCCC--CCCCCCCccC
Q 045995 942 DFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGG--VNFESAPFKL 1019 (1129)
Q Consensus 942 ~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~~--~~~E~vPFRL 1019 (1129)
+|+.++++ ....|..|++||++|||||||+||||||||||||||||+.+||+||||||||||++|+. ++||+|||||
T Consensus 181 ~wl~~~~~-~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~~G~l~HIDFG~ilg~~~~~~~i~~E~~PFkL 259 (366)
T cd05165 181 HWLKEKNP-TEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKETGQLFHIDFGHILGNYKSKFGINRERVPFVL 259 (366)
T ss_pred HHHHhhCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcCCCCEEEEehHHhhccCCccCCCCCCCCCeee
Confidence 89887643 35678899999999999999999999999999999999999999999999999998764 5799999999
Q ss_pred cHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHH
Q 045995 1020 TRELLEVMDSDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCV 1099 (1129)
Q Consensus 1020 TkemvevMG~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~ 1099 (1129)
|++|+++||.+..|..|+.|+.|+.+|++||.+||+|+++|++|+++|+++++|||+. ..+|.+|++||+|++||++|.
T Consensus 260 T~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~~-~~~i~~lr~rf~l~~se~eA~ 338 (366)
T cd05165 260 TPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELTS-KEDIEYLRDTLALGKSEEEAL 338 (366)
T ss_pred cHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccCc-hhHHHHHHHHhCCCCCHHHHH
Confidence 9999999995444568999999999999999999999999999999999999999995 478999999999999999999
Q ss_pred HHHHHHHHHHhh-chhhhhHHHHHHHH
Q 045995 1100 SLVLSLISSSLD-AWRTRQYDYYQRVL 1125 (1129)
Q Consensus 1100 ~~v~~LI~~S~~-s~~Tr~YD~fQ~~t 1125 (1129)
++|.++|.+|++ +|+| .||||-+..
T Consensus 339 ~~f~~~I~~s~~~~~~t-~~~~~~H~~ 364 (366)
T cd05165 339 KYFLDKFNEALDGSWTT-KFNWFSHLV 364 (366)
T ss_pred HHHHHHHHHHHhcCcee-eeHHHHHHh
Confidence 999999999998 6666 888887654
No 8
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=3.1e-74 Score=642.96 Aligned_cols=299 Identities=26% Similarity=0.417 Sum_probs=274.3
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHH
Q 045995 810 PPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISH 889 (1129)
Q Consensus 810 p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~l 889 (1129)
|..||+ +|.++|+|++|+.+.++.|. ++|.++++.+..+.|+.|.+|||+|||||||+++||+|++
T Consensus 49 ~~~lPl--------~P~~~i~~i~~~~~~v~~S~------~~Pl~l~f~~~d~~~~~~~~IfK~gDDLRQD~l~lQli~l 114 (354)
T cd05177 49 SCCLPL--------NPALRVKGIDADACSYFTSN------AAPLKISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRV 114 (354)
T ss_pred CCccCC--------CCCeEEEEEecCccEEehhh------cCCCEEEEEecCCCCCeEEEEEeCCCcccHHHHHHHHHHH
Confidence 567787 89999999999988777654 5889999999877789999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCC-----CCcHHHHHHHHhCCCChHHHHHHHHHHH
Q 045995 890 FYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPN-----ITSLRDFFVAKYQENSPSFKLAQRNFVE 964 (1129)
Q Consensus 890 mn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~-----i~sL~~~f~~~f~~~s~~f~~ar~nFir 964 (1129)
||+||++++++++++||+|||||.++||||||+|+.|+++|++.++. ..+|.+||..++. ....|..|++||++
T Consensus 115 md~i~~~~~ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~a~~nF~~ 193 (354)
T cd05177 115 MDNIWLQEGLDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRESGLIGPLKENTIEKWFHMHNK-LKEDYDKAVRNFFH 193 (354)
T ss_pred HHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChHhHHHHHHhhCCCcccchhhHHHHHHHhCC-ChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988642 2478899987653 34568889999999
Q ss_pred hhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCCC--CCCCCCCccCcHHHHHHHcCCCCCCCchhHHHH
Q 045995 965 SMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGG--VNFESAPFKLTRELLEVMDSDAEGLPSEFFDYF 1042 (1129)
Q Consensus 965 SlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~~--~~~E~vPFRLTkemvevMG~g~eG~~Se~f~~F 1042 (1129)
|||||||+||||||||||||||||+.+||+||||||||||++|++ +.+|++|||||++|+++||. +|.+|+.|+.|
T Consensus 194 S~AgysvvtYiLGigDRHn~NILi~~~G~~~HIDFG~ilg~~~~~~~~~~E~~PF~LT~emv~~~~~--GG~~s~~f~~F 271 (354)
T cd05177 194 SCAGWCVVTFILGVCDRHNDNIMLTHSGHMFHIDFGKFLGHAQTFGSIKRDRAPFIFTSEMEYFITE--GGKKPQRFQRF 271 (354)
T ss_pred HHHHHHHHHHHhcccCcCCCceeEcCCCCEEEEehHHhcCCCccccCCCcCCCCeeccHHHHHHhcC--CCCCchhHHHH
Confidence 999999999999999999999999999999999999999999754 57899999999999998873 37889999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 045995 1043 KVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQ 1122 (1129)
Q Consensus 1043 r~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~s~~Tr~YD~fQ 1122 (1129)
+.+|++||.+||+|+++|++|+++|+++++|||+. ..+|++|++||+|++|++||..||.++|++|+++|.|+++|.++
T Consensus 272 ~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~-~~~i~~l~~~~~l~~sd~eA~~~f~~lI~~s~~~~~~~~~~~~H 350 (354)
T cd05177 272 VELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKD-IQDLKYVYNNLRPQDTDLEATSYFTKKIKESLECFPVKLNNLIH 350 (354)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCc-chHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Confidence 99999999999999999999999999999999985 35799999999999999999999999999999999999999998
Q ss_pred HHHh
Q 045995 1123 RVLN 1126 (1129)
Q Consensus 1123 ~~tn 1126 (1129)
.+.|
T Consensus 351 ~~aq 354 (354)
T cd05177 351 TLAQ 354 (354)
T ss_pred HhcC
Confidence 8754
No 9
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=3.6e-74 Score=643.62 Aligned_cols=301 Identities=27% Similarity=0.462 Sum_probs=272.2
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhheeeeecccCCC---CceEEEEEecCCchhhHHHHHHH
Q 045995 810 PPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPG---WDLRSVIVKSGDDCRQEHLAVQL 886 (1129)
Q Consensus 810 p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~---g~~~svI~K~GDDLRQDqL~mQL 886 (1129)
+..+|+ +|+++++|++++.+..+.|. ++|.++.+.+..+. ++.|.+|||+|||||||+++||+
T Consensus 54 ~~~lPl--------~P~~~~~~i~~~~~~v~~S~------~~Pl~l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~lQl 119 (365)
T cd00894 54 SFRVPY--------DPGLRAGALVIEKCKVMASK------KKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQI 119 (365)
T ss_pred CCCCCC--------CCceEEEEEEcCceEEEccc------CCceEEEEECCCCCccCCCceeEEEeCCCcccHHHHHHHH
Confidence 456676 89999999999988776644 57888888876543 46899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCC------CCcHHHHHHHHhCCCChHHHHHHH
Q 045995 887 ISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPN------ITSLRDFFVAKYQENSPSFKLAQR 960 (1129)
Q Consensus 887 i~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~------i~sL~~~f~~~f~~~s~~f~~ar~ 960 (1129)
|++|++||++++++|||+||+|+|||.++||||||+|+.|+++|++.... ...|.+||.++++ ....|..|++
T Consensus 120 i~lmd~i~~~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~~~k~~~l~~~l~~~~~-~~~~~~~a~~ 198 (365)
T cd00894 120 LRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLSHWLKEKCP-IEEKFQAAVE 198 (365)
T ss_pred HHHHHHHHHHcCCCeEEEEEEEEEecCCceEEEEcCCchhHHHHHHhcccccccccchhHHHHHHHhCC-CHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986532 1368899988653 4567889999
Q ss_pred HHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCC--CCCCCCCCccCcHHHHHHHcCCCCCCCchh
Q 045995 961 NFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPG--GVNFESAPFKLTRELLEVMDSDAEGLPSEF 1038 (1129)
Q Consensus 961 nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~--~~~~E~vPFRLTkemvevMG~g~eG~~Se~ 1038 (1129)
||++|||||||+||||||||||||||||+.+||+||||||||||++|+ +++||+||||||++|+++||. .+|.+|+.
T Consensus 199 nFi~S~AgYsV~tYiLGIgDRHndNImi~~~G~lfHIDFG~ilg~~~~~~gi~~E~~PFkLT~e~v~vmg~-~gg~~s~~ 277 (365)
T cd00894 199 RFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGT-SGKKTSLH 277 (365)
T ss_pred HHHHHhHHHHHHHHhccccCccccceeEcCCCCEEEEeeHHhhCCCCccCCCCCCCCCeeecHHHHHHhCc-cCCcCChh
Confidence 999999999999999999999999999999999999999999999875 467999999999999999993 24778999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchhhhhH
Q 045995 1039 FDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQY 1118 (1129)
Q Consensus 1039 f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~s~~Tr~Y 1118 (1129)
|++|+.+|++||.+||+|+++|++|+++|++++|||++. ..+|++|++||+|++||++|.++|.++|.+|+++|+|.+|
T Consensus 278 f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~~-~~~i~~l~~~~~l~~se~eA~~~f~~~I~~s~~~~~~~~~ 356 (365)
T cd00894 278 FQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTS-KEDIEYIRDALTVGKSEEDAKKHFLDQIEVCRDKGWTVQF 356 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCc-chHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCeeee
Confidence 999999999999999999999999999999999999985 3679999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 045995 1119 DYYQRVLNG 1127 (1129)
Q Consensus 1119 D~fQ~~tnG 1127 (1129)
|||.+..-|
T Consensus 357 n~~~h~~~~ 365 (365)
T cd00894 357 NWFLHLVLG 365 (365)
T ss_pred HHHHHHhcC
Confidence 999887654
No 10
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=3.2e-73 Score=635.24 Aligned_cols=310 Identities=26% Similarity=0.430 Sum_probs=278.0
Q ss_pred HHHHHHHHhcCC-----CCCCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhheeeeecccCCCCceEEEEE
Q 045995 797 IEEVKAAAAKGE-----APPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPGWDLRSVIV 871 (1129)
Q Consensus 797 ~~~~~~~~~~~~-----~p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~g~~~svI~ 871 (1129)
.++++..+++.. ..+++|| +|+++++|++++.+.++.| +++|+++.+.+...+|+.|.+||
T Consensus 34 ~~~~~~~l~~~~~~~~~~~~~lPl--------~p~~~~~~~~~~~~~v~~S------k~~Pl~l~f~~~~~~g~~~~~If 99 (361)
T cd05174 34 KEDMHVCMKQETYLEALSHLQSPL--------SPSIILCEVCVDQCTFMDS------KMKPLWIMYKNEEAGGGSVGIIF 99 (361)
T ss_pred HHHHHHHhcCchhhhhhccCCCCC--------CCceEEEEEEcCcEEEEec------cCCceEEEEeecCCCCCEEEEEE
Confidence 677888776652 2456777 7999999999999887764 45789999999877899999999
Q ss_pred ecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCC--------CCcHHHH
Q 045995 872 KSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPN--------ITSLRDF 943 (1129)
Q Consensus 872 K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~--------i~sL~~~ 943 (1129)
|+|||||||+++||+|++||.||++++++|||+||+|||||+++||||||+|+.|+++|++.+.+ ...|.+|
T Consensus 100 K~gDDLRQD~l~~Qli~lmd~i~k~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~~~~~~f~~~~l~~~ 179 (361)
T cd05174 100 KNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLSTGDKTGLIEVVKNSDTIANIQLNKSNMAATAAFNKDALLNW 179 (361)
T ss_pred eCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEecCCceEEEEeCCchhHHHHHHhhcccchhccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876432 1368889
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCC--CCCCCCCCccCcH
Q 045995 944 FVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPG--GVNFESAPFKLTR 1021 (1129)
Q Consensus 944 f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~--~~~~E~vPFRLTk 1021 (1129)
|.++++ .++|.+|++||++|||||||+||||||||||||||||+.+||+||||||||||+.|+ +++||+||||||+
T Consensus 180 l~~~~~--~~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~ 257 (361)
T cd05174 180 LKSKNP--GDALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDFGHFLGNFKTKFGINRERVPFILTY 257 (361)
T ss_pred HHhcCC--cHHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcCCCCEEEEehHHhhcCCcccCCCCCCCCCeeccH
Confidence 887653 357889999999999999999999999999999999999999999999999999765 4688999999999
Q ss_pred HHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHH
Q 045995 1022 ELLEVMDSDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSL 1101 (1129)
Q Consensus 1022 emvevMG~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~ 1101 (1129)
+|+++||.| +|..|+.|+.|+.+|++||.+||+|+++|++|+++|++++|||++. ..+|++|++||+|++||+||..+
T Consensus 258 e~v~vmg~G-~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~-~~~i~~l~~~~~l~~se~ea~~~ 335 (361)
T cd05174 258 DFVHVIQQG-KTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNC-SKDIQYLKDSLALGKTEEEALKH 335 (361)
T ss_pred HHHHHHccC-CCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCc-hhHHHHHHHHhCCCCCHHHHHHH
Confidence 999999843 2557899999999999999999999999999999999999999985 47899999999999999999999
Q ss_pred HHHHHHHHh-hchhhhhHHHHHHH
Q 045995 1102 VLSLISSSL-DAWRTRQYDYYQRV 1124 (1129)
Q Consensus 1102 v~~LI~~S~-~s~~Tr~YD~fQ~~ 1124 (1129)
|..+|.+|+ ++|+|++...++.+
T Consensus 336 f~~~i~~s~~~~~~~~~n~~~H~~ 359 (361)
T cd05174 336 FRVKFNEALRESWKTKVNWLAHNV 359 (361)
T ss_pred HHHHHHHHHhhCchhhhHHHHHhh
Confidence 999999999 59999987777654
No 11
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=4.7e-73 Score=635.01 Aligned_cols=311 Identities=25% Similarity=0.426 Sum_probs=277.0
Q ss_pred HHHHHHHHhcCC-----CCCCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhheeeeecccCCCCceEEEEE
Q 045995 797 IEEVKAAAAKGE-----APPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPGWDLRSVIV 871 (1129)
Q Consensus 797 ~~~~~~~~~~~~-----~p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~g~~~svI~ 871 (1129)
.+.++..+++.. .++.||+ +|.++++|++++.+.++.|. ++|.++.+.+...+|+.|.+||
T Consensus 34 ~~~l~~~l~~~~~~~~~~~~~lPl--------dP~~~v~~i~~~~~~v~~S~------~~Pl~l~f~~~~~~g~~~~~If 99 (362)
T cd05173 34 KEAMHTCLRQSAYREALSDLQSPL--------NPSIILSELNVEKCKYMDSK------MKPLWIVYNNKLFGGDSLGIIF 99 (362)
T ss_pred HHHHHHHHhcccchhcccCCCCCC--------CCceEEEEEEcCceEEeccc------CCCeEEEEeecCCCCCEEEEEE
Confidence 566676665542 3567787 89999999999998877654 5788888877767899999999
Q ss_pred ecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCC--------CcHHHH
Q 045995 872 KSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNI--------TSLRDF 943 (1129)
Q Consensus 872 K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i--------~sL~~~ 943 (1129)
|+|||||||+++||+|++||+||++++++|+|+||+|||||.++||||||+|+.|+++|+..+.+. ..|.+|
T Consensus 100 K~gDDLRQD~l~lQli~lm~~i~k~~~ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~~~~~~~f~~~~l~~~ 179 (362)
T cd05173 100 KNGDDLRQDMLTLQILRLMDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVSSAETIADIQLNSSNVAAAAAFNKDALLNW 179 (362)
T ss_pred eCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCchhHHHHHHhccccchhcccChhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998654321 368888
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCC--CCCCCCCCccCcH
Q 045995 944 FVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPG--GVNFESAPFKLTR 1021 (1129)
Q Consensus 944 f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~--~~~~E~vPFRLTk 1021 (1129)
+.... ..++|..|++||++|||||||+||||||||||||||||+.+||+||||||||||+.++ +++||+||||||+
T Consensus 180 l~~~~--~~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~ 257 (362)
T cd05173 180 LKEYN--SGDDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVRKNGQLFHIDFGHILGNFKSKFGIKRERVPFILTY 257 (362)
T ss_pred HHhcC--CcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCEEEEehHHhhccCCcccCCCCCCCCeeecH
Confidence 87642 3467889999999999999999999999999999999999999999999999998664 4678999999999
Q ss_pred HHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHH
Q 045995 1022 ELLEVMDSDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSL 1101 (1129)
Q Consensus 1022 emvevMG~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~ 1101 (1129)
+|+++||.|..| .|+.|+.|+.+|++||.+||+|+++|++|+++|+++++||++. ..+|++|++||+|++||++|..+
T Consensus 258 emv~vm~~G~~g-~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~-~~~i~~l~~r~~l~~se~eA~~~ 335 (362)
T cd05173 258 DFIHVIQQGKTG-NTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTS-VKDIQYLKDSLALGKSEEEALKQ 335 (362)
T ss_pred HHHHHHhcCCCC-CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccc-hhHHHHHHHhcCCCCCHHHHHHH
Confidence 999999854445 6889999999999999999999999999999999999999985 47899999999999999999999
Q ss_pred HHHHHHHHhh-chhhhhHHHHHHHH
Q 045995 1102 VLSLISSSLD-AWRTRQYDYYQRVL 1125 (1129)
Q Consensus 1102 v~~LI~~S~~-s~~Tr~YD~fQ~~t 1125 (1129)
|.++|.+|++ +|.|++...++.+.
T Consensus 336 f~~~i~~s~~~~~~t~~n~~~H~~~ 360 (362)
T cd05173 336 FRQKFDEALRESWTTKVNWMAHTVR 360 (362)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999995 99999888888764
No 12
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=4e-73 Score=633.86 Aligned_cols=309 Identities=25% Similarity=0.431 Sum_probs=270.5
Q ss_pred HHHHHHHHhcCC-----CCCCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhheeeeecccCCCC----ceE
Q 045995 797 IEEVKAAAAKGE-----APPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPGW----DLR 867 (1129)
Q Consensus 797 ~~~~~~~~~~~~-----~p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~g----~~~ 867 (1129)
++.+++.++... .+..+|+ +|.++++|++++.+.++.|. .+|.++.+.+..+.+ ..|
T Consensus 34 ~~~l~~~l~~~~~~~~~~~~~lPl--------~P~~~~~~i~~e~c~v~~S~------~~Pl~l~f~~~d~~~~~~~~~~ 99 (366)
T cd05175 34 MKFLVEQMRRPDFMDALQGFTSPL--------NPAHQLGNLRLEECRIMSSA------KRPLWLNWENPDIMSELLFQNN 99 (366)
T ss_pred HHHHHHHhcCchhhhccCCCCCCC--------CCceEEEEEEeccceeechh------cCCeEEEEEcCCcccccccCCc
Confidence 556666665542 3567787 79999999999998877654 466777777654432 458
Q ss_pred EEEEecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCC-------CCCcH
Q 045995 868 SVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYP-------NITSL 940 (1129)
Q Consensus 868 svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~-------~i~sL 940 (1129)
.+|||+|||||||+++||+|++|++||+++++||||+||+|||||.++||||||+|+.|+++|++.++ +..+|
T Consensus 100 ~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~~~~~~~~l 179 (366)
T cd05175 100 EIIFKNGDDLRQDMLTLQIIRIMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGGLKGALQFNSHTL 179 (366)
T ss_pred ceEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcCCchhHHHHHhccccccccccCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999987642 12368
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCCC--CCCCCCCcc
Q 045995 941 RDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGG--VNFESAPFK 1018 (1129)
Q Consensus 941 ~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~~--~~~E~vPFR 1018 (1129)
.+|+...+ ....|..|++||++|||||||+||||||||||||||||+.+||+||||||||||++|+. +.||+||||
T Consensus 180 ~~~l~~~~--~~~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~~G~l~HIDFG~iLg~~p~~~~~~~E~~PFk 257 (366)
T cd05175 180 HQWLKDKN--KGEMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHIDFGHFLDHKKKKFGYKRERVPFV 257 (366)
T ss_pred HHHHhhcC--CcHHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEcCCCCEEEEehHHhhcCCCccCCCCCCCCCeE
Confidence 88887754 34678899999999999999999999999999999999999999999999999999874 578999999
Q ss_pred CcHHHHHHHcC-CCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHH
Q 045995 1019 LTRELLEVMDS-DAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQ 1097 (1129)
Q Consensus 1019 LTkemvevMG~-g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeee 1097 (1129)
||++|+++||+ +.++..|+.|++|+.+|++||.+||+|+++|++|+++|++++|||++.. .++.+||+||+|++||+|
T Consensus 258 LT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l~~~-~~i~~lr~rf~l~~sd~e 336 (366)
T cd05175 258 LTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSF-DDIAYIRKTLALDKTEQE 336 (366)
T ss_pred ecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCc-cHHHHHHHhcCCCCCHHH
Confidence 99999999983 3345678999999999999999999999999999999999999999863 679999999999999999
Q ss_pred HHHHHHHHHHHHhh-chhhhhHHHHHH
Q 045995 1098 CVSLVLSLISSSLD-AWRTRQYDYYQR 1123 (1129)
Q Consensus 1098 A~~~v~~LI~~S~~-s~~Tr~YD~fQ~ 1123 (1129)
|.++|.++|.+|++ +|+|+ ||||=+
T Consensus 337 A~~~f~~~I~~s~~~~w~t~-~n~~~H 362 (366)
T cd05175 337 ALEYFMKQMNDAHHGGWTTK-MDWIFH 362 (366)
T ss_pred HHHHHHHHHHHHHhcCceee-ehHHHH
Confidence 99999999999987 78888 777643
No 13
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=5.2e-73 Score=634.58 Aligned_cols=310 Identities=29% Similarity=0.476 Sum_probs=279.7
Q ss_pred HHHHHHHHhcCC----CCCCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhheeeeecccCCCCceEEEEEe
Q 045995 797 IEEVKAAAAKGE----APPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPGWDLRSVIVK 872 (1129)
Q Consensus 797 ~~~~~~~~~~~~----~p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~g~~~svI~K 872 (1129)
.+.+++.+.... .+..||+ +|.+.+.|++++.+.++.| +++|+++++.+..+.|+.|.+|||
T Consensus 31 ~~~l~~~L~~~~~~~~~~~~lP~--------~p~~~i~~i~~~~~~v~~S------~~~P~~l~f~~~d~~g~~~~~i~K 96 (352)
T cd00891 31 KELLREELKKLENNLPQEFTLPL--------DPRLEIKGLIIEKCKVMDS------KKKPLWLVFKNADPSGEPIKVIFK 96 (352)
T ss_pred HHHHHHHHhhhhccCCCCccCCC--------CCceEEEEEeccceEEecc------ccCCcEEEEEecCCCCCEEEEEec
Confidence 344555554432 3456666 7999999999988776654 578999999999666999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCC------CcHHHHHHH
Q 045995 873 SGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNI------TSLRDFFVA 946 (1129)
Q Consensus 873 ~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i------~sL~~~f~~ 946 (1129)
+|||||||+++||+|++||+||++++++++|+||+|||||.++||||||+|+.|+++|++.++.. ..|.+|+.+
T Consensus 97 ~gDDLRqD~l~~Ql~~l~~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~~~~~~~l~~~~~~ 176 (352)
T cd00891 97 VGDDLRQDMLTLQMIRLMDKIWKKEGLDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGGAFKDNPLMNWLKK 176 (352)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHhcCccccccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987543 378999987
Q ss_pred HhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCC--CCCCCCCCccCcHHHH
Q 045995 947 KYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPG--GVNFESAPFKLTRELL 1024 (1129)
Q Consensus 947 ~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~--~~~~E~vPFRLTkemv 1024 (1129)
.++. ...|..|++||++|||||||+|||||||||||+||||+.+||+||||||||||+.|+ +++||.||||||++|+
T Consensus 177 ~~~~-~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~~~G~~~HIDFG~ilg~~~~~~~~~~E~~PFrLT~~mv 255 (352)
T cd00891 177 KNKG-EEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLTKTGHLFHIDFGHFLGNFKKKFGIKRERAPFVLTPDMA 255 (352)
T ss_pred hCCC-HHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEECCCCCEEEEehHHhhccCCccCCCCCCCCCeeecHHHH
Confidence 7643 346788999999999999999999999999999999999999999999999998765 4579999999999999
Q ss_pred HHHcCCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHHHHH
Q 045995 1025 EVMDSDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLS 1104 (1129)
Q Consensus 1025 evMG~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~v~~ 1104 (1129)
++|| |.+|+.|+.|+.+|+.||.+||+|++.|++|+++|+++++|||+. ..+|.+|++||++++|+++|..+|.+
T Consensus 256 ~~mG----g~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~-~~~i~~l~~r~~l~~s~~~a~~~~~~ 330 (352)
T cd00891 256 YVMG----GGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQS-IEDIEYLRDALALDKSDEEATEYFRK 330 (352)
T ss_pred HHhC----CCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCc-HHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999 667889999999999999999999999999999999999999984 57899999999999999999999999
Q ss_pred HHHHHhhchhhhhHHHHHHHHh
Q 045995 1105 LISSSLDAWRTRQYDYYQRVLN 1126 (1129)
Q Consensus 1105 LI~~S~~s~~Tr~YD~fQ~~tn 1126 (1129)
+|++|+++|+|++||.+|.+.+
T Consensus 331 lI~~s~~~~~~~~~~~~h~~~~ 352 (352)
T cd00891 331 LIHESLNSKTTKVNNFIHNLAH 352 (352)
T ss_pred HHHHHHhcchHhHHHHHHHhhC
Confidence 9999999999999999999864
No 14
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=1.6e-72 Score=630.38 Aligned_cols=299 Identities=27% Similarity=0.412 Sum_probs=272.8
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHH
Q 045995 810 PPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISH 889 (1129)
Q Consensus 810 p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~l 889 (1129)
++.||+ +|+++++|+.++.+.++. ++++|+++++.|..+.|+.|.+|||+|||||||+++||+|++
T Consensus 48 ~~~lP~--------~p~~~~~~i~~~~~~v~~------S~~~P~~l~f~~~d~~g~~~~~i~K~gDDLRQD~l~~Qli~l 113 (353)
T cd05166 48 KCRLPL--------NPALDVKGIDVRECSYFN------SNALPLKISFVNADPMGENISVIFKAGDDLRQDMLVLQMINI 113 (353)
T ss_pred CCccCC--------CCceEEEeEEcCceEEec------cccCceEEEEEecCCCCCEEEEEEeCCCcccHHHHHHHHHHH
Confidence 456676 789999999998876654 346899999999966699999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCC-----CcHHHHHHHHhCCCChHHHHHHHHHHH
Q 045995 890 FYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNI-----TSLRDFFVAKYQENSPSFKLAQRNFVE 964 (1129)
Q Consensus 890 mn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i-----~sL~~~f~~~f~~~s~~f~~ar~nFir 964 (1129)
||+||++++++|+++||+|+|||+++||||||+|+.|+++|++.++.. ..|.+||.+++ +++..|..|+.||++
T Consensus 114 m~~i~~~~~ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~~g~~~~~~~~~l~~~l~~~~-~~~~~~~~a~~nF~~ 192 (353)
T cd05166 114 MDKIWLQEGLDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVEEGLTGSFKDRPIAKWLMKHN-PSELEYEKAVENFIY 192 (353)
T ss_pred HHHHHHhCCCCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHHhCccccccchhHHHHHHHhC-CChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887532 36788987764 344568889999999
Q ss_pred hhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCC--CCCCCCCCccCcHHHHHHHcCCCCCCCchhHHHH
Q 045995 965 SMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPG--GVNFESAPFKLTRELLEVMDSDAEGLPSEFFDYF 1042 (1129)
Q Consensus 965 SlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~--~~~~E~vPFRLTkemvevMG~g~eG~~Se~f~~F 1042 (1129)
|||||||+|||||||||||+||||+.+||+||||||||||+++. ++.||+||||||++|+++||+ +|.+|+.|+.|
T Consensus 193 S~A~ysvv~YiLgigDRH~~NILl~~~G~l~HIDFG~~lg~~~~~~~~~~E~~PFrLT~emv~~~gg--g~~~s~~~~~F 270 (353)
T cd05166 193 SCAGCCVATYVLGICDRHNDNIMLTKSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVING--GDKPTQRFQDF 270 (353)
T ss_pred HHHHHHHHHHHhhccccCCCceEECCCCCEEEEeeHHhcccccccccCCCCCCCccccHHHHHHhcC--CCCCcchHhHH
Confidence 99999999999999999999999999999999999999999864 467999999999999999983 24578899999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 045995 1043 KVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQ 1122 (1129)
Q Consensus 1043 r~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~s~~Tr~YD~fQ 1122 (1129)
+.+|+.||.+||+|++.|++|+++|+++++|||+. ..++++|++||+|++||++|..+|.++|++|+++|+|++.|+++
T Consensus 271 ~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~-~~~i~~l~~r~~l~~s~~ea~~~~~~~I~~s~~s~~t~~~~~~H 349 (353)
T cd05166 271 VDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSK-IQDLKYVRDALRPQLTDAEATIQFTKMIQSSLGSAFTKLNFFIH 349 (353)
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCc-hhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999985 47899999999999999999999999999999999999999999
Q ss_pred HHHh
Q 045995 1123 RVLN 1126 (1129)
Q Consensus 1123 ~~tn 1126 (1129)
.+.|
T Consensus 350 ~~aq 353 (353)
T cd05166 350 NLAQ 353 (353)
T ss_pred HhcC
Confidence 8754
No 15
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=9.7e-73 Score=631.78 Aligned_cols=306 Identities=31% Similarity=0.480 Sum_probs=277.2
Q ss_pred HHHHHHHHhcCC-------CCCCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhheeeeecccCC-CCceEE
Q 045995 797 IEEVKAAAAKGE-------APPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSP-GWDLRS 868 (1129)
Q Consensus 797 ~~~~~~~~~~~~-------~p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~-~g~~~s 868 (1129)
.+.+++.+.+.. .+.+||+ +|.+.|+|++++.+.++.| +++|+++.+.|+.+ ..+.|.
T Consensus 32 ~~~l~~~l~~~~~~~~~~~~~~~lP~--------dp~~~i~~i~~~~~~v~~S------~~~P~~l~f~~~dg~~~~~~~ 97 (350)
T cd00896 32 IEKLKQLLSSIEYELLLDFEPIPLPL--------DPSIEITGIIPEESSVFKS------ALMPLKLTFKTEKGNEEGEYP 97 (350)
T ss_pred HHHHHHHHhccccccccCCCCCcCCC--------CCCeEEEEEecCceEEecc------ccCceEEEEEeCCCCCCceEE
Confidence 556666665432 3456666 7999999999988777654 46899999999843 128999
Q ss_pred EEEecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCCCcHHHHHHHHh
Q 045995 869 VIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNITSLRDFFVAKY 948 (1129)
Q Consensus 869 vI~K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i~sL~~~f~~~f 948 (1129)
+|||+|||||||+++||+|++||.||++++++++++||+|+|||+++||||||+ +.|+++|+++++ .+.+|+...+
T Consensus 98 ~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~---~l~~~l~~~~ 173 (350)
T cd00896 98 VIFKVGDDLRQDQLVIQIISLMDRLLKKENLDLKLTPYKVLATSPTDGLVEFIP-SVTLASILKKYG---GILNYLRKLN 173 (350)
T ss_pred EEecCCcchhHhHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCCcceEEEe-cccHHHHHHHHH---HHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999 999999999874 5899999888
Q ss_pred CCCChH---HHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCCCCCCCCCCccCcHHHHH
Q 045995 949 QENSPS---FKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLE 1025 (1129)
Q Consensus 949 ~~~s~~---f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemve 1025 (1129)
+....+ +..|+.||++|||||||+|||||||||||+||||+.+||+||||||||||++|++ ++||||||++|++
T Consensus 174 ~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~~~G~~~HIDFG~ilg~~p~~---~~~PFrLT~~mv~ 250 (350)
T cd00896 174 PDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLTKDGKLFHIDFGYILGRDPKP---FPPPMKLCKEMVE 250 (350)
T ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEcCCCCEEEEEhHHhhCCCCCC---CCCCeeccHHHHH
Confidence 754443 5789999999999999999999999999999999999999999999999999975 4799999999999
Q ss_pred HHcCCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCCh-hHHHHHHHHhCCCCCHHHHHHHHHH
Q 045995 1026 VMDSDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGP-RTIQNLRKRFHLSLTEEQCVSLVLS 1104 (1129)
Q Consensus 1026 vMG~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~-~~I~~LrdRF~L~LSeeeA~~~v~~ 1104 (1129)
+|| |.+|+.|+.|+.+|+.||.+||+|++.|++|+++|+++++|||+..+ ++|.+|++||+|++|+++|.++|.+
T Consensus 251 ~mG----g~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~ea~~~~~~ 326 (350)
T cd00896 251 AMG----GAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEEAIKHFQN 326 (350)
T ss_pred HhC----CCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 999 77889999999999999999999999999999999999999998643 6899999999999999999999999
Q ss_pred HHHHHhhchhhhhHHHHHHHHhc
Q 045995 1105 LISSSLDAWRTRQYDYYQRVLNG 1127 (1129)
Q Consensus 1105 LI~~S~~s~~Tr~YD~fQ~~tnG 1127 (1129)
+|++|+++|+|++||+||.+.|.
T Consensus 327 lI~~s~~~~~t~~~d~~h~~aq~ 349 (350)
T cd00896 327 LINDSVNALFPVVVDRLHAWAQY 349 (350)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999873
No 16
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-68 Score=610.72 Aligned_cols=319 Identities=30% Similarity=0.516 Sum_probs=283.7
Q ss_pred chhhhhhcCCCCccccccCCchhhHHHHHHHHhcC-------CCCCCCCCCCCCCCCCCCCccccCCCCCcchhccccch
Q 045995 773 RMEDIEYQGPPRRKEHRRVPSTVAIEEVKAAAAKG-------EAPPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELW 845 (1129)
Q Consensus 773 ~m~~v~~~~~~~~k~~~~~p~~~~~~~~~~~~~~~-------~~p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw 845 (1129)
.|..+.+.+++++|+ +++++..+... ..++++|| +|++.|.||+|+.+..|+|+++
T Consensus 511 i~~~v~~~~g~~~kK---------~e~L~~lL~~~~~~~l~~~~~i~lpl--------dp~v~i~~Iip~t~~~FkSsl~ 573 (843)
T KOG0906|consen 511 IMKEVKRGSGRRKKK---------IERLRGLLGDHKHMNLLDVRLIALPL--------DPDVLIKGIIPDTASLFKSSLM 573 (843)
T ss_pred HHHHHHhhCCchHHH---------HHHHHHHHhcccccccccceeeccCC--------CCCceEeeecCchhhhhhhccC
Confidence 355666777777765 56666665433 24677888 7999999999999999999999
Q ss_pred HHHHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCch
Q 045995 846 EVKKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTA 925 (1129)
Q Consensus 846 ~~kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~ 925 (1129)
|.+. ++. ...++..|++|||+||||||||+++|+|++|+++++++++||+++||+|||||+..|+||+|+ +.
T Consensus 574 Pl~l------~fk-t~~g~g~y~vIFK~GDDLrQDqlV~Qii~lMd~LLkkenlDLkLtpYkVLatg~~eG~vefI~-s~ 645 (843)
T KOG0906|consen 574 PLKL------TFK-TDDGGGKYPVIFKKGDDLRQDQLVLQIIRLMDRLLKKENLDLKLTPYKVLATGPKEGFVEFIP-SK 645 (843)
T ss_pred ceeE------EEE-ecCCCCceeEEEecCcchhHHHHHHHHHHHHHHHhccccccccceeeEEeccCCCcccEEeec-CC
Confidence 9764 222 223444899999999999999999999999999999999999999999999999999999999 56
Q ss_pred hHHHHHHhCCCCCcHHHHHHHHhCCCChHH---HHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeecccc
Q 045995 926 SLHSIKSRYPNITSLRDFFVAKYQENSPSF---KLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFM 1002 (1129)
Q Consensus 926 SL~~I~k~~~~i~sL~~~f~~~f~~~s~~f---~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfI 1002 (1129)
++..|..+| ..+..|+.+.+++....| ..+++||++||||||||||||||||||+||+||+++||+||||||||
T Consensus 646 ~la~Ils~~---~~I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT~dGk~FHiDFgyI 722 (843)
T KOG0906|consen 646 PLARILSEY---HSILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLTKDGKLFHIDFGYI 722 (843)
T ss_pred cHHHHHHHH---HHHHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEccCCcEEEEeeeee
Confidence 999999988 468999988766432222 24899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCccCcHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCCh-hH
Q 045995 1003 LSNSPGGVNFESAPFKLTRELLEVMDSDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGP-RT 1081 (1129)
Q Consensus 1003 Lg~~p~~~~~E~vPFRLTkemvevMG~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~-~~ 1081 (1129)
||++|+++ ++|+||+++|+++|| |.+|+.|++|+..|+.||.+||+|+++|+||+++|++++||+++..+ ++
T Consensus 723 lGRDPKP~---pp~MkL~kemve~mg----g~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~dp~k~ 795 (843)
T KOG0906|consen 723 LGRDPKPF---PPPMKLAKEMVEGMG----GAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAFDPNKA 795 (843)
T ss_pred ccCCCCCC---CCccccCHHHHHHhc----ccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceeeCcchh
Confidence 99999998 899999999999999 99999999999999999999999999999999999999999998655 68
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHh
Q 045995 1082 IQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQRVLN 1126 (1129)
Q Consensus 1082 I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~s~~Tr~YD~fQ~~tn 1126 (1129)
|.++++||+|+||||+|.+||+++|++|++|.++.+.|..+++-|
T Consensus 796 I~kvqeRfrLdmSde~A~~~fq~lI~~SV~AL~~~v~d~ih~~aq 840 (843)
T KOG0906|consen 796 ILKVQERFRLDMSDEAATKHFQKLINESVNALFPQVVDLIHRLAQ 840 (843)
T ss_pred hHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988765
No 17
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-65 Score=611.72 Aligned_cols=251 Identities=47% Similarity=0.845 Sum_probs=242.0
Q ss_pred EEEecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCCCcHHHHHHHHh
Q 045995 869 VIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNITSLRDFFVAKY 948 (1129)
Q Consensus 869 vI~K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i~sL~~~f~~~f 948 (1129)
.|||.|||||||++++|+|++|.+||+..|+|+++-||+|+||++.||+||+|||+.|-+++.++. .+.|++||..+|
T Consensus 1548 ~IFKvGDDcRQD~LaLQiislf~~if~~~gLd~~lfPYrV~aT~pGcGVIEviPn~~SRdqlGr~t--~~glyeyF~~~~ 1625 (1803)
T KOG0902|consen 1548 AIFKVGDDCRQDMLALQIISLFKNIFQLVGLDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLGRET--DNGLYEYFTRKY 1625 (1803)
T ss_pred hhhhcCchHHHHHHHHHHHHHHHHHHHHcCCceEEeeeeeeccCCCCceEEeCCCCccHHHhcccc--cccHHHHHHHhc
Confidence 799999999999999999999999999999999999999999999999999999999999999865 468999999999
Q ss_pred CC-CChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCCC-CCCCCCCccCcHHHHHH
Q 045995 949 QE-NSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGG-VNFESAPFKLTRELLEV 1026 (1129)
Q Consensus 949 ~~-~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~~-~~~E~vPFRLTkemvev 1026 (1129)
|. .+..|+.||.||++|+|||||++|+||++||||||||||..||++||||||||..+||+ ++||+ |||||+||+.+
T Consensus 1626 G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd~G~~iHIDFGf~~e~sPGgnl~fE~-~fKLt~Em~~~ 1704 (1803)
T KOG0902|consen 1626 GDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDDQGHIIHIDFGFMFESSPGGNLGFEP-PFKLTKEMVML 1704 (1803)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEccCCCEEEEeeeeEEecCCCCccCcCC-CccchHHHHHH
Confidence 96 56789999999999999999999999999999999999999999999999999999998 99998 99999999999
Q ss_pred HcCCCCCC-CchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHHHHHH
Q 045995 1027 MDSDAEGL-PSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSL 1105 (1129)
Q Consensus 1027 MG~g~eG~-~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~v~~L 1105 (1129)
|| |. ++..|+.|..+|++||+|+|+|++-|+.+|.+|+++++|||++ ++|.+++.||+++|+|.||..+|..+
T Consensus 1705 mg----G~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfrg--~~i~nl~~RF~pemsereAa~fm~~v 1778 (1803)
T KOG0902|consen 1705 MG----GKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFRG--QTIGNLRARFAPEMSEREAALFMLSV 1778 (1803)
T ss_pred hC----CCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccCc--chHHHHHHhhCcccchHHHHHHHHHH
Confidence 99 43 3678999999999999999999999999999999999999986 59999999999999999999999999
Q ss_pred HHHHhhchhhhhHHHHHHHHhcC
Q 045995 1106 ISSSLDAWRTRQYDYYQRVLNGI 1128 (1129)
Q Consensus 1106 I~~S~~s~~Tr~YD~fQ~~tnGI 1128 (1129)
|.+|+.+|+|++||.|||+||||
T Consensus 1779 i~~~~~~~rt~~YD~~Q~~~n~I 1801 (1803)
T KOG0902|consen 1779 ITDSYLKIRTKMYDQIQYLQNGI 1801 (1803)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998
No 18
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6e-62 Score=577.86 Aligned_cols=330 Identities=24% Similarity=0.379 Sum_probs=293.1
Q ss_pred hhhhhhcCCCCccccccCCchhhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccccCCCCCcchhccccchHHHHHhhe
Q 045995 774 MEDIEYQGPPRRKEHRRVPSTVAIEEVKAAAAKGEAPPGLPLKGAGQDSSDAKPRANGGIPRATDALSGELWEVKKERIR 853 (1129)
Q Consensus 774 m~~v~~~~~~~~k~~~~~p~~~~~~~~~~~~~~~~~p~~lpl~~~~~~~~~~~~~i~gi~p~~s~~~~selw~~kk~RpR 853 (1129)
.++|.++++..++...+ -.+++|+..++++. -..||| .|...++|+.++.+..|.|+..| -
T Consensus 1011 ae~Vr~as~s~Rq~vL~----~~l~~v~~ff~~n~-tcrLPL--------~Pal~vkGv~i~~CSyFnSNA~P------L 1071 (1639)
T KOG0905|consen 1011 AEDVRSASGSARQHVLR----TGLGRVDSFFLQNN-TCRLPL--------CPALDVKGVRIRECSYFNSNALP------L 1071 (1639)
T ss_pred HHHHHhccchHHHHHHH----HhHHHHHHHHHhCC-ceeccc--------CchheeccccccccccccCCCcc------e
Confidence 34455555555443222 25788998887762 246888 57778899999999998888755 5
Q ss_pred eeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHh
Q 045995 854 KASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSR 933 (1129)
Q Consensus 854 k~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~ 933 (1129)
|+++.|..+.|..+++|||+||||||||++||||++|++||.++||||+|.+|+|+|||.+.||||.|+|+.||..|...
T Consensus 1072 KitFvnadp~geni~iIfK~gDDLRQDml~lQmI~iMdkIWl~egLDlrMViFrc~stG~~rgMvElVp~a~TLrKIQve 1151 (1639)
T KOG0905|consen 1072 KITFVNADPLGENISIIFKCGDDLRQDMLVLQMIRIMDKIWLQEGLDLRMVIFRCLSTGYDRGMVELVPNAETLRKIQVE 1151 (1639)
T ss_pred EEEEecCCCccccceeeeecCchHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeecccccccceeecccHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC-----cHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCC-
Q 045995 934 YPNIT-----SLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSP- 1007 (1129)
Q Consensus 934 ~~~i~-----sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p- 1007 (1129)
++-.+ .|.+|+.++ .+....|++|.+||++|||||||+||||||+||||||||+.++||+||||||-+||++.
T Consensus 1152 ~GltGsfkD~pla~WL~Kh-Np~e~eYekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~~sGHmFHIDFGKFLGhaQM 1230 (1639)
T KOG0905|consen 1152 EGLTGSFKDRPLAKWLMKH-NPSEFEYEKAVENFIYSCAGWCVATYVLGICDRHNDNIMLTKSGHMFHIDFGKFLGHAQM 1230 (1639)
T ss_pred hccccccccchHHHHHHhc-CCCHHHHHHHHHHHHHhcccceeeeEeeecccccCCceEEeccCcEEEEehhhhcchHHH
Confidence 86443 577888764 44556899999999999999999999999999999999999999999999999999985
Q ss_pred -CCCCCCCCCccCcHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHH
Q 045995 1008 -GGVNFESAPFKLTRELLEVMDSDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLR 1086 (1129)
Q Consensus 1008 -~~~~~E~vPFRLTkemvevMG~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~Lr 1086 (1129)
|++.+.++||.||.+|..|+.+ ++.++..|+.|..+||+||+++|||+++++||+.+|+.+|||.+.+ .+++++|+
T Consensus 1231 fg~fKRDRaPFVfTSdMayvINg--G~kpt~~fq~FVDlCCrAyNiiRK~t~lllnlL~lM~~agiPeln~-i~dLkYV~ 1307 (1639)
T KOG0905|consen 1231 FGGFKRDRAPFVFTSDMAYVING--GDKPTQRFQDFVDLCCRAYNIIRKNTNLLLNLLRLMACAGIPELNS-IQDLKYVY 1307 (1639)
T ss_pred hcccccccCCeEEeccchhhhcC--CCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCccc-hhhHHHHH
Confidence 5688899999999999999984 3678999999999999999999999999999999999999999984 57899999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHh
Q 045995 1087 KRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQRVLN 1126 (1129)
Q Consensus 1087 dRF~L~LSeeeA~~~v~~LI~~S~~s~~Tr~YD~fQ~~tn 1126 (1129)
+.++++.|+.+|..+|.++|++|+++|.|++.-..+.+-|
T Consensus 1308 ~aL~pq~td~eAT~~FTkmIqsSLgs~~tklNffiHnLAQ 1347 (1639)
T KOG0905|consen 1308 NALRPQDTDAEATVQFTKMIQSSLGSAFTKLNFFIHNLAQ 1347 (1639)
T ss_pred hhcCcccCChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887777655
No 19
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-58 Score=538.47 Aligned_cols=287 Identities=28% Similarity=0.507 Sum_probs=243.4
Q ss_pred CCCccccCCCCCcchh---ccccchHHHHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHcCCC
Q 045995 824 DAKPRANGGIPRATDA---LSGELWEVKKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLP 900 (1129)
Q Consensus 824 ~~~~~i~gi~p~~s~~---~~selw~~kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~Ld 900 (1129)
+|..+.-+.+++.+.+ .+..+|..... -..|+ +. ...+|||+|||||||+|++|++++|+.||+.+|+|
T Consensus 771 dP~~~lgel~iekckvM~SkkrPLwl~~~N-----p~~~s--~~-~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~glD 842 (1076)
T KOG0904|consen 771 DPSLKLGELIIEKCKVMDSKKRPLWLVFEN-----PDAGS--NL-SVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTEGLD 842 (1076)
T ss_pred ChhhhhcchhhhhhhhhhccCCceEEEecC-----CCccc--CC-ceeEEEcCCchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5666655555555443 34456665421 11122 11 56899999999999999999999999999999999
Q ss_pred CCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCC--------CCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHH
Q 045995 901 LWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPN--------ITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLV 972 (1129)
Q Consensus 901 L~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~--------i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVv 972 (1129)
++|.||.|||||...||||.|.++.||.+|+...++ ...|.+|+..+ .+....+.+|.+.|+.|||||||+
T Consensus 843 lrm~PYgcls~Gd~iGlIEVV~~s~TIa~IQ~~~g~~~at~afn~~~L~~WLKek-Np~e~kld~AIe~Ft~SCAGYcVA 921 (1076)
T KOG0904|consen 843 LRMLPYGCLSTGDRIGLIEVVRNSETIANIQLNTGNMAATAAFNKDALLNWLKEK-NPGEDKLDAAIEEFTLSCAGYCVA 921 (1076)
T ss_pred eeccccccccccceeeeEEEecCchhhhhhhhccccceeeccCCHHHHHHHHhhc-CchHHHHHHHHHHHHHhhccceee
Confidence 999999999999999999999999999999876543 23677787543 333445889999999999999999
Q ss_pred HhhhccCCCCCCcceecCCCCEEEeeccccccCCCC--CCCCCCCCccCcHHHHHHHcCCCCCCCchhHHHHHHHHHHHH
Q 045995 973 CYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPG--GVNFESAPFKLTRELLEVMDSDAEGLPSEFFDYFKVLCIQGF 1050 (1129)
Q Consensus 973 tYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~--~~~~E~vPFRLTkemvevMG~g~eG~~Se~f~~Fr~lc~~af 1050 (1129)
||||||||||+|||||.++|.+||||||||||+.+. ++++|+|||.||+.++.||+.|..+.....|+.|+.+|++||
T Consensus 922 TyVLGIgDRHsDNIMvke~GqlFHIDFGHiLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AY 1001 (1076)
T KOG0904|consen 922 TYVLGIGDRHSDNIMVKETGQLFHIDFGHILGHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAY 1001 (1076)
T ss_pred eeeecccccccCceEEeccCcEEEEEhhhhhccchhhcCcccccCceEeecceeeeecccCCCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999754 578999999999999999996554543345999999999999
Q ss_pred HHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh-chhhhhHHHH
Q 045995 1051 LTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLD-AWRTRQYDYY 1121 (1129)
Q Consensus 1051 ~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~-s~~Tr~YD~f 1121 (1129)
.+||+|.++||+||+||+.+|+|+++. .++|++||+.+.++.|||+|.+||...++++++ +|.|++ +|+
T Consensus 1002 l~lr~H~nLfi~LFsmMl~~glPELss-~~Di~ylrdtL~l~ktEEeA~k~F~~k~~eA~~~sWtTk~-NW~ 1071 (1076)
T KOG0904|consen 1002 LALRRHGNLFISLFSMMLGTGLPELSS-KKDIDYLRDTLALGKTEEEALKYFRDKFEEALRGSWTTKV-NWL 1071 (1076)
T ss_pred HHHHHccccHHHHHHHHHhcCCCcccc-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCceeee-hhh
Confidence 999999999999999999999999985 489999999999999999999999999999988 777754 443
No 20
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=2.6e-54 Score=461.46 Aligned_cols=218 Identities=22% Similarity=0.406 Sum_probs=203.2
Q ss_pred HHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHc----CCCCCcCCcEEEEccCCCceeeeccC
Q 045995 848 KKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEA----GLPLWLRPYEVLVTSSYTALIETIYD 923 (1129)
Q Consensus 848 kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke----~LdL~L~pY~VLpts~~~GLIE~V~n 923 (1129)
++++||++++.|+ +|+.|.+|+|+|||||||+++||++++||.+|+++ +++++++||+|+|+++++||||||++
T Consensus 13 s~~~P~~i~~~~~--dG~~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~~~GlIE~v~~ 90 (237)
T cd00892 13 SLQKPKKITLIGS--DGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLNEECGIIEWVPN 90 (237)
T ss_pred ccCCceEEEEEcC--CCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcCCCCceEEECCC
Confidence 3479999999998 78999999999999999999999999999999997 89999999999999999999999999
Q ss_pred chhHHHHHHhCCCCCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecC-CCCEEEeecccc
Q 045995 924 TASLHSIKSRYPNITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFM 1002 (1129)
Q Consensus 924 s~SL~~I~k~~~~i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~-tG~lfHIDFGfI 1002 (1129)
+.|+++|.+++. .+.|.+||.++|+.. ..|..++++|+.|||+|||+||||||||||++||||+. +|+++|||||++
T Consensus 91 ~~sl~~i~~~~~-~~~l~~~~~~~~~~~-~~~~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~ 168 (237)
T cd00892 91 TATLRSILLEIY-PPVFHEWFLENFPDP-SAWLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCL 168 (237)
T ss_pred CccHHHHHHHhC-CHHHHHHHHHHCcCH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhh
Confidence 999999998763 257899999988754 34667899999999999999999999999999999999 999999999999
Q ss_pred ccCCCCCCCCCCCCccCcHHHHHHHc-CCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCC
Q 045995 1003 LSNSPGGVNFESAPFKLTRELLEVMD-SDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFK 1076 (1129)
Q Consensus 1003 Lg~~p~~~~~E~vPFRLTkemvevMG-~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~ 1076 (1129)
|+.++...+||+||||||++|+++|| .|++|. |+..|+.++.+||+|++.|++++++|+++++-+|.
T Consensus 169 ~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~g~-------F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~ 236 (237)
T cd00892 169 FDKGETLEVPERVPFRLTQNMVDAMGVLGVEGL-------FRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWS 236 (237)
T ss_pred hcccccCCCCCCCCcccCHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhcc
Confidence 99998878899999999999999999 566665 99999999999999999999999999999998885
No 21
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=5e-54 Score=458.91 Aligned_cols=215 Identities=24% Similarity=0.370 Sum_probs=200.1
Q ss_pred HHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHc----CCCCCcCCcEEEEccCCCceeeeccC
Q 045995 848 KKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEA----GLPLWLRPYEVLVTSSYTALIETIYD 923 (1129)
Q Consensus 848 kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke----~LdL~L~pY~VLpts~~~GLIE~V~n 923 (1129)
++++||++++.|+ +|+.|.+|+|+|||||||+++||++++||.+|+++ +++++++||+|+|+++++||||||++
T Consensus 13 S~~~Pkri~~~~~--dG~~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls~~~GlIE~v~~ 90 (235)
T cd05172 13 SLRKPKRITIRGS--DEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMTPRFGLIEWLEN 90 (235)
T ss_pred cCCCCEEEEEECC--CCCEEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeCCCCceEEEcCC
Confidence 4579999999998 78999999999999999999999999999999974 78999999999999999999999999
Q ss_pred chhHHHHHHhCCCCCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecC-CCCEEEeecccc
Q 045995 924 TASLHSIKSRYPNITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFM 1002 (1129)
Q Consensus 924 s~SL~~I~k~~~~i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~-tG~lfHIDFGfI 1002 (1129)
+.|+++|++. +.+++||...+.. ...|..++++|++|||+||++||||||||||++||||+. +|+++|||||++
T Consensus 91 ~~sl~~i~~~----~~l~~~~~~~~~~-~~~~~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~ 165 (235)
T cd05172 91 TTPLKEILKN----DLLRRALVEMSAS-PEAFLSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHA 165 (235)
T ss_pred chhHHHHHhh----HHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhh
Confidence 9999999986 5789999887654 445667999999999999999999999999999999996 999999999999
Q ss_pred ccCCCCC-CCCCCCCccCcHHHHHHHc-CCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCC
Q 045995 1003 LSNSPGG-VNFESAPFKLTRELLEVMD-SDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFK 1076 (1129)
Q Consensus 1003 Lg~~p~~-~~~E~vPFRLTkemvevMG-~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~ 1076 (1129)
|+++++. .+||.||||||++|+++|| .|++|. |+..|+.++.+||++++.|++++++|+.+++-+|.
T Consensus 166 f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~G~-------f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~ 234 (235)
T cd05172 166 FGTATQFLPIPELMPFRLTPQFVNLMEPMKADGL-------LRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWK 234 (235)
T ss_pred hccCCccCCCCCCCCeeeCHHHHHHhCCCCCCCh-------HHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhc
Confidence 9999984 5789999999999999999 678887 99999999999999999999999999999988775
No 22
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=4.2e-53 Score=460.77 Aligned_cols=219 Identities=27% Similarity=0.427 Sum_probs=196.6
Q ss_pred HHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHc----CCCCCcCCcEEEEccCCCceeeeccC
Q 045995 848 KKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEA----GLPLWLRPYEVLVTSSYTALIETIYD 923 (1129)
Q Consensus 848 kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke----~LdL~L~pY~VLpts~~~GLIE~V~n 923 (1129)
++++||++++.|+ +|+.|++|+|+|||||||+++||++++||.||+++ ++++.++||.|||+++++||||||++
T Consensus 13 s~~~pk~i~~~gs--dG~~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls~~~GlIE~v~~ 90 (280)
T cd05169 13 SKQRPRRLTIVGS--DGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLSPNVGLIGWVPG 90 (280)
T ss_pred CCCCCeEEEEECC--CCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecCCCcceEEeCCC
Confidence 3479999999999 79999999999999999999999999999999997 48999999999999999999999999
Q ss_pred chhHHHHHHhCCC---C--------------------------------------CcHHHHHHHHhCCCChHHHHHHHHH
Q 045995 924 TASLHSIKSRYPN---I--------------------------------------TSLRDFFVAKYQENSPSFKLAQRNF 962 (1129)
Q Consensus 924 s~SL~~I~k~~~~---i--------------------------------------~sL~~~f~~~f~~~s~~f~~ar~nF 962 (1129)
+.|+.+|++.+.. . +.|++||...+.. ...|..+++||
T Consensus 91 ~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~-~~~w~~~r~~F 169 (280)
T cd05169 91 CDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNLTLIQKLEVFEYALNNTPGDDLRKILWLKSPS-SEAWLERRTNF 169 (280)
T ss_pred CchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 9999999865310 0 1245555555443 34566799999
Q ss_pred HHhhhhHHHHHhhhccCCCCCCcceecC-CCCEEEeeccccccCCCCC-CCCCCCCccCcHHHHHHHc-CCCCCCCchhH
Q 045995 963 VESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFMLSNSPGG-VNFESAPFKLTRELLEVMD-SDAEGLPSEFF 1039 (1129)
Q Consensus 963 irSlAgYSVvtYILGIGDRHndNILLd~-tG~lfHIDFGfILg~~p~~-~~~E~vPFRLTkemvevMG-~g~eG~~Se~f 1039 (1129)
++|||+|||+||||||||||++||||+. +|+++|||||++|+.+++. .+||.||||||++|+++|| .|++|.
T Consensus 170 ~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~lG~~g~~G~----- 244 (280)
T cd05169 170 TRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNALGVSGIEGT----- 244 (280)
T ss_pred HHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHhCCCCCCCc-----
Confidence 9999999999999999999999999999 9999999999999999875 5789999999999999999 577776
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCC
Q 045995 1040 DYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFK 1076 (1129)
Q Consensus 1040 ~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~ 1076 (1129)
|+..|+.++.+||+|++.|++++++|+++++-+|.
T Consensus 245 --F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~ 279 (280)
T cd05169 245 --FRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWR 279 (280)
T ss_pred --hHHHHHHHHHHHhcChHHHHHHHHHHHhCcccccc
Confidence 99999999999999999999999999999999885
No 23
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=3.7e-53 Score=552.74 Aligned_cols=290 Identities=36% Similarity=0.588 Sum_probs=261.6
Q ss_pred CCCccccCCCCCcchhccccchHHHHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHcCC----
Q 045995 824 DAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGL---- 899 (1129)
Q Consensus 824 ~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~L---- 899 (1129)
.|.|+|.+..|+... ++ .++++|+++++.|+ ||+.|++++|+|||||||+++||++++||+||++++.
T Consensus 1762 k~~v~I~~f~p~~~~-~~-----~~~~~p~rl~~rgs--dG~~y~~i~K~~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R 1833 (2105)
T COG5032 1762 KPFVLIERFEPEVSV-VK-----SHLQRPRRLTIRGS--DGKLYSFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRR 1833 (2105)
T ss_pred CCCceEEEecCceee-ee-----cccccceEEEEEec--CCcEEEEEeecCccchHHHHHHHHHHHHHHHHHhChHhhhc
Confidence 367777777776532 22 23579999999998 8999999999999999999999999999999999866
Q ss_pred CCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCC-----------------------------------CCcHHHHH
Q 045995 900 PLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPN-----------------------------------ITSLRDFF 944 (1129)
Q Consensus 900 dL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~-----------------------------------i~sL~~~f 944 (1129)
++++++|+|||||+++|+||||||+.|+|+|.+++-. .+.+++||
T Consensus 1834 ~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f 1913 (2105)
T COG5032 1834 DLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILREYHKRKNISIDQEKKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWF 1913 (2105)
T ss_pred CccceeeeeEeccCCcceEEEecCcchHHHHHHHHhhhcCCChhHHhhhhhhhhhhcccchhHHhhhhhcCCCchHHHHH
Confidence 9999999999999999999999999999999876411 13677888
Q ss_pred HHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecC-CCCEEEeeccccccCCCCCCCC-CCCCccCcHH
Q 045995 945 VAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFMLSNSPGGVNF-ESAPFKLTRE 1022 (1129)
Q Consensus 945 ~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~-tG~lfHIDFGfILg~~p~~~~~-E~vPFRLTke 1022 (1129)
...|++. ..|+.+|.||++|||+|||+||||||||||++|||||. +||+||||||+||+..|+.+.+ |.||||||++
T Consensus 1914 ~~~f~~~-~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~ 1992 (2105)
T COG5032 1914 SESFPNP-EDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRN 1992 (2105)
T ss_pred HHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHH
Confidence 8888654 45667999999999999999999999999999999999 9999999999999999999866 9999999999
Q ss_pred HHHHHc-CCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcC------CCCCCC-CChhHHHHHHHHhCCCCC
Q 045995 1023 LLEVMD-SDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDS------GFPCFK-GGPRTIQNLRKRFHLSLT 1094 (1129)
Q Consensus 1023 mvevMG-~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s------~lPcf~-~~~~~I~~LrdRF~L~LS 1094 (1129)
|+++|| .|++|. |+.+|+.+|.+||+|++.|++++++|+++ .+||+. ....++.++.+||+++++
T Consensus 1993 iv~~mg~~g~EG~-------Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~~~~~~~~~~~~v~~rf~~kl~ 2065 (2105)
T COG5032 1993 IVEAMGVSGVEGS-------FRELCETAFRALRKNADSLMNVLELFVRDPLIEWRRLPCFREIQNNEIVNVLERFRLKLS 2065 (2105)
T ss_pred HHHhcCccchhhH-------HHHHHHHHHHHHhccHHHHHHHHHHHhcCcchhhhcCccccchHHHHHHHHHHHHHHHhh
Confidence 999999 677776 99999999999999999999999999998 899998 334678888899999999
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhcCC
Q 045995 1095 EEQCVSLVLSLISSSLDAWRTRQYDYYQRVLNGIL 1129 (1129)
Q Consensus 1095 eeeA~~~v~~LI~~S~~s~~Tr~YD~fQ~~tnGI~ 1129 (1129)
+.++..++.-+|.+++++..|..||.+|..++||.
T Consensus 2066 ~~~~~~~~~l~I~~sv~~li~~a~d~~~L~~~yi~ 2100 (2105)
T COG5032 2066 EKDAEKFVDLLINKSVESLITQATDPFQLATMYIG 2100 (2105)
T ss_pred hhhhhhhcCCcHHHHHHHHHHHHcCHHHHHhhccc
Confidence 99999999999999999999999999999999984
No 24
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=1.3e-52 Score=457.75 Aligned_cols=219 Identities=24% Similarity=0.393 Sum_probs=199.6
Q ss_pred HHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHc----CCCCCcCCcEEEEccCCCceeeeccC
Q 045995 848 KKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEA----GLPLWLRPYEVLVTSSYTALIETIYD 923 (1129)
Q Consensus 848 kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke----~LdL~L~pY~VLpts~~~GLIE~V~n 923 (1129)
++++||++++.|+ +|+.|.+|+|+|||||||+++||++++||++|+++ ++++++++|.|+|+|+++||||||++
T Consensus 13 s~~~Pkri~~~gs--dG~~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~~~GLIe~v~~ 90 (279)
T cd05171 13 GINAPKIITCVGS--DGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSPRAGILEWVDG 90 (279)
T ss_pred CCCCCEEEEEECC--CCCEEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCCCceEEEECCC
Confidence 5678999999999 89999999999999999999999999999999987 79999999999999999999999999
Q ss_pred chhHHHHHHhCCC-----------------------------------------CCcHHHHHHHHhCCCChHHHHHHHHH
Q 045995 924 TASLHSIKSRYPN-----------------------------------------ITSLRDFFVAKYQENSPSFKLAQRNF 962 (1129)
Q Consensus 924 s~SL~~I~k~~~~-----------------------------------------i~sL~~~f~~~f~~~s~~f~~ar~nF 962 (1129)
+.|+++|++.+.+ .+.+++||...|+. +..|+.+++||
T Consensus 91 ~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~~~-~~~~~~~r~~F 169 (279)
T cd05171 91 TIPLGEYLVGATGAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKFLD-PQDWFERRLAY 169 (279)
T ss_pred ChhHHHHHHHhhhcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHCcC-HHHHHHHHHHH
Confidence 9999999775410 01346677777763 34566799999
Q ss_pred HHhhhhHHHHHhhhccCCCCCCcceecC-CCCEEEeeccccccCCCCCCCCCCCCccCcHHHHHHHc-CCCCCCCchhHH
Q 045995 963 VESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMD-SDAEGLPSEFFD 1040 (1129)
Q Consensus 963 irSlAgYSVvtYILGIGDRHndNILLd~-tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemvevMG-~g~eG~~Se~f~ 1040 (1129)
++|||+|||+||||||||||++||||+. +|+++|||||++|++++...+||.||||||++|+++|| .|++|.
T Consensus 170 ~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg~~g~~g~------ 243 (279)
T cd05171 170 TRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMGITGVEGV------ 243 (279)
T ss_pred HHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhCCCCCcch------
Confidence 9999999999999999999999999997 99999999999999998877899999999999999999 566666
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCC
Q 045995 1041 YFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFK 1076 (1129)
Q Consensus 1041 ~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~ 1076 (1129)
|+..|+.++.+||++++.|++++++|+++++-+|+
T Consensus 244 -f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~ 278 (279)
T cd05171 244 -FRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278 (279)
T ss_pred -HHHHHHHHHHHHHcChHHHHHHHHHHHhCcccccc
Confidence 99999999999999999999999999999998885
No 25
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=2.8e-52 Score=435.05 Aligned_cols=194 Identities=41% Similarity=0.763 Sum_probs=182.1
Q ss_pred EEEEecCCchhhHHHHHHHHHHHHHHHHHcC----CCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCCCcHHHH
Q 045995 868 SVIVKSGDDCRQEHLAVQLISHFYDIFQEAG----LPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNITSLRDF 943 (1129)
Q Consensus 868 svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~----LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i~sL~~~ 943 (1129)
.||+|+|||||||+++||++++||.||++++ ++++++||.|+|+++++||||||+++.|+++| |.+|
T Consensus 1 ~~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i---------l~~~ 71 (202)
T smart00146 1 AVIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI---------LYDW 71 (202)
T ss_pred CeeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH---------HHHH
Confidence 3899999999999999999999999999987 99999999999999999999999999999999 8899
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCCCCCC-CCCCccCcHH
Q 045995 944 FVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNF-ESAPFKLTRE 1022 (1129)
Q Consensus 944 f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~~~~~-E~vPFRLTke 1022 (1129)
|.+.++... .|..++++|++|||+||++||||||||||++||||+++|+++|||||++|+++|+...+ |.||||||++
T Consensus 72 ~~~~~~~~~-~~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~ 150 (202)
T smart00146 72 FKKKFPDPE-DYFEARKNFTRSCAGYSVITYILGLGDRHNDNIMLDKTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPE 150 (202)
T ss_pred HHHHCcCHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEeCCCCEEEEechhhhCccccCCCCCCCCCeecCHH
Confidence 999887544 46779999999999999999999999999999999999999999999999999999877 9999999999
Q ss_pred HHHHHc-CCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCC
Q 045995 1023 LLEVMD-SDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGG 1078 (1129)
Q Consensus 1023 mvevMG-~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~ 1078 (1129)
|+++|| .+. ++.|+..|+.++.+||+|++.|++++++|+.+++|||...
T Consensus 151 ~~~~lg~~~~-------~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~d~l~~~~~~ 200 (202)
T smart00146 151 MVDVMGDSGY-------FGLFRSLCERALRALRKNSNLIMSLLELMLYDGLPDWRSG 200 (202)
T ss_pred HHHHhCCCcc-------cchHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCChhhcCC
Confidence 999999 333 4559999999999999999999999999999999999853
No 26
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=2.5e-52 Score=440.57 Aligned_cols=203 Identities=31% Similarity=0.585 Sum_probs=189.6
Q ss_pred HHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHc-CCCCCcCCcEEEEccCCCceeeeccCchhH
Q 045995 849 KERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEA-GLPLWLRPYEVLVTSSYTALIETIYDTASL 927 (1129)
Q Consensus 849 k~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke-~LdL~L~pY~VLpts~~~GLIE~V~ns~SL 927 (1129)
+++|+++++.|+ +|+.|++|+|+|||||||+++||++++||.||+++ ++++++++|.|+|+++++||||||+++.|+
T Consensus 14 ~~~P~~l~~~~~--dg~~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~~~~l~~~~y~vipls~~~GlIE~v~~~~sl 91 (219)
T cd00142 14 KTRPKKLTLIGA--DGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKELGLDLFLTTYSVIPLSPRSGLIEVVPGSVTL 91 (219)
T ss_pred cCCCEEEEEEcc--CCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCCCCCceEEeEEEEEecCCceEEEEeCCCchh
Confidence 389999999999 69999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecC-CCCEEEeeccccccCC
Q 045995 928 HSIKSRYPNITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFMLSNS 1006 (1129)
Q Consensus 928 ~~I~k~~~~i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~-tG~lfHIDFGfILg~~ 1006 (1129)
+ ..|.+|+...+.... .|+.+++||+.|||+||++||||||||||++||||+. +|+++|||||++||.+
T Consensus 92 ~---------~~l~~~~~~~~~~~~-~~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~ 161 (219)
T cd00142 92 E---------DDLSKWLKRKSPDED-EWQEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKR 161 (219)
T ss_pred H---------HHHHHHHHHHCcCHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcC
Confidence 9 467888888776543 5667999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCCCCccCcHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 045995 1007 PGGVNFESAPFKLTRELLEVMDSDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQD 1069 (1129)
Q Consensus 1007 p~~~~~E~vPFRLTkemvevMG~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~ 1069 (1129)
|+...+|+||||||++|+++||. . ..++.|+..|+.+|.+||+|++.|++++++|+.
T Consensus 162 ~~~~~~e~vPFRLT~~~~~~~g~----~--~~~g~F~~~~~~~~~~lr~~~~~i~~ll~~~~~ 218 (219)
T cd00142 162 KKFLGRERVPFRLTPDLVNALGT----G--GVFGPFRSLCVKAMLILRRHAGLLLNLLSLMLR 218 (219)
T ss_pred cCCCCCCCCCEeccHHHHHHhCC----c--chhhhHHHHHHHHHHHHHhChHHHHHHHHHhcc
Confidence 99988999999999999999992 2 236679999999999999999999999999975
No 27
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=1e-51 Score=437.59 Aligned_cols=203 Identities=30% Similarity=0.510 Sum_probs=188.2
Q ss_pred HHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHcC----CCCCcCCcEEEEccCCCceeeeccC
Q 045995 848 KKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAG----LPLWLRPYEVLVTSSYTALIETIYD 923 (1129)
Q Consensus 848 kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~----LdL~L~pY~VLpts~~~GLIE~V~n 923 (1129)
++++|+++.+.|+ +|+.|.+|+|+|||||||+++||++++||.+|++++ ++++++||.|+|+++++||||||+|
T Consensus 13 S~~~P~~i~~~~~--dG~~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls~~~GliE~v~~ 90 (222)
T cd05164 13 SKQKPKKITLTGS--DGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLNSRSGLIEWVEG 90 (222)
T ss_pred ccCCCEEEEEECC--CCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcCCCCceEEEcCC
Confidence 4579999999998 789999999999999999999999999999999986 9999999999999999999999999
Q ss_pred chhHHHHHHhCCCCCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecC-CCCEEEeecccc
Q 045995 924 TASLHSIKSRYPNITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFM 1002 (1129)
Q Consensus 924 s~SL~~I~k~~~~i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~-tG~lfHIDFGfI 1002 (1129)
+.|++. .|.+|+...+... ..|+.+++||+.|||+||++||||||||||++||||+. +|+++|||||++
T Consensus 91 ~~sl~~---------~l~~~~~~~~~~~-~~~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~ 160 (222)
T cd05164 91 TTTLKP---------VLKKWFWLQFPDP-EQWFAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCI 160 (222)
T ss_pred cchHHH---------HHHHHHHHHCcCH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHh
Confidence 999994 4667888877544 45667999999999999999999999999999999999 999999999999
Q ss_pred ccCCCCCCCCCCCCccCcHHHHHHHc-CCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q 045995 1003 LSNSPGGVNFESAPFKLTRELLEVMD-SDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQD 1069 (1129)
Q Consensus 1003 Lg~~p~~~~~E~vPFRLTkemvevMG-~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~ 1069 (1129)
|+.++...+||.||||||++|+++|| .|++|. |+..|+.++.+||+|++.|++++++|+.
T Consensus 161 ~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~G~-------f~~~~~~~~~~Lr~~~~~l~s~l~~fv~ 221 (222)
T cd05164 161 FEKGKTLPVPELVPFRLTRNIINGMGITGVEGL-------FRKICEQTLEVFRKHRDTLIAFLEVFVY 221 (222)
T ss_pred hccCCCCCCCCCCCEEeCHHHHHHhCCCCcCCh-------HHHHHHHHHHHHHhCHHHHHHHHHHHhc
Confidence 99998877799999999999999999 456665 9999999999999999999999999975
No 28
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=5.2e-50 Score=442.57 Aligned_cols=219 Identities=21% Similarity=0.347 Sum_probs=192.6
Q ss_pred HHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHc----CCCCCcCCcEEEEccCCCceeeeccC
Q 045995 848 KKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEA----GLPLWLRPYEVLVTSSYTALIETIYD 923 (1129)
Q Consensus 848 kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke----~LdL~L~pY~VLpts~~~GLIE~V~n 923 (1129)
++++||++++.|+ +|+.|.||+|+|||||||+++||++++||.+|+++ .++|.++||.|+|+++++||||||+|
T Consensus 13 Sk~~Pkri~~~gs--DG~~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs~~~GLIEwv~~ 90 (307)
T cd05170 13 TKTKPKKLAFLGS--DGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLGPRSGLIQWVDG 90 (307)
T ss_pred cCCCceEEEEECC--CCCEEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcCCCcceEEEcCC
Confidence 5789999999998 79999999999999999999999999999999985 67899999999999999999999999
Q ss_pred chhHHHHHHhCCC-----------------C-----C-------------------------------cHHHHH------
Q 045995 924 TASLHSIKSRYPN-----------------I-----T-------------------------------SLRDFF------ 944 (1129)
Q Consensus 924 s~SL~~I~k~~~~-----------------i-----~-------------------------------sL~~~f------ 944 (1129)
+.|+++|.+.+.. . . .+.+.|
T Consensus 91 ~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 170 (307)
T cd05170 91 ATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSVLRQVLDELMQE 170 (307)
T ss_pred ChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHHHHHHHHHHHHh
Confidence 9999998753200 0 0 001111
Q ss_pred ----------HHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecC-CCCEEEeeccccccCCCCCCCCC
Q 045995 945 ----------VAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFMLSNSPGGVNFE 1013 (1129)
Q Consensus 945 ----------~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~-tG~lfHIDFGfILg~~p~~~~~E 1013 (1129)
...+ .+...|..++++|++|||+|||+||||||||||++||||+. +|+++|||||++|+.++...+||
T Consensus 171 ~~~~~l~~~~~~~~-~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f~~~~~l~~pE 249 (307)
T cd05170 171 TPKDLLARELWCSS-TTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCFEKGKSLRIPE 249 (307)
T ss_pred CCHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhhcccCCCCCCC
Confidence 1111 23345677999999999999999999999999999999996 99999999999999988777899
Q ss_pred CCCccCcHHHHHHHc-CCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCC
Q 045995 1014 SAPFKLTRELLEVMD-SDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFK 1076 (1129)
Q Consensus 1014 ~vPFRLTkemvevMG-~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~ 1076 (1129)
.||||||++|+++|| .|++|. |+..|+.++.+||++++.|++++++|+++++-+|+
T Consensus 250 ~VPFRLT~~~~~~lg~~g~~G~-------f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 250 KVPFRMTQNIETALGLTGVEGV-------FRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred CCCeeeCHHHHHHhCCCCCchh-------HHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 999999999999999 577776 99999999999999999999999999999999986
No 29
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-47 Score=481.25 Aligned_cols=267 Identities=22% Similarity=0.361 Sum_probs=239.5
Q ss_pred HHHHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHc----CCCCCcCCcEEEEccCCCceeeec
Q 045995 846 EVKKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEA----GLPLWLRPYEVLVTSSYTALIETI 921 (1129)
Q Consensus 846 ~~kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke----~LdL~L~pY~VLpts~~~GLIE~V 921 (1129)
..+.||||++++.|+ +|+.|.+|+|..||||+|.+.|++-.+||++|+++ .+.|+|+||.|||+++.|||||||
T Consensus 2053 l~SLqKPKkI~l~Gs--DGk~Y~~lCKpKDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv 2130 (2382)
T KOG0890|consen 2053 LNSLQKPKKIKLRGS--DGKIYPFLCKPKDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWV 2130 (2382)
T ss_pred HHhccCCeEEEEEcC--CCCEeEEEeCchhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCCccceEEec
Confidence 347799999999999 89999999999999999999999999999999985 678999999999999999999999
Q ss_pred cCchhHHHHHHhC------------------------------------CC-CCcHHHHHHHHhCCCChHHHHHHHHHHH
Q 045995 922 YDTASLHSIKSRY------------------------------------PN-ITSLRDFFVAKYQENSPSFKLAQRNFVE 964 (1129)
Q Consensus 922 ~ns~SL~~I~k~~------------------------------------~~-i~sL~~~f~~~f~~~s~~f~~ar~nFir 964 (1129)
+|+.++.+|..+. |+ .+.+++||...|+++..||. +|.+|++
T Consensus 2131 ~nt~slR~IL~klY~~rg~~~~~~~l~~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW~~-SR~~Y~r 2209 (2382)
T KOG0890|consen 2131 PNTASLREILDKLYMTRGKWMIKKQLRSVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSWFA-SRNNYAR 2209 (2382)
T ss_pred CCcchHHHHHHHHHHhccccchhhHHHHhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHHHH-HHHHHHH
Confidence 9999999987541 01 14789999999998888885 9999999
Q ss_pred hhhhHHHHHhhhccCCCCCCcceecC-CCCEEEeeccccccCCCCCCCCCCCCccCcHHHHHHHc-CCCCCCCchhHHHH
Q 045995 965 SMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMD-SDAEGLPSEFFDYF 1042 (1129)
Q Consensus 965 SlAgYSVvtYILGIGDRHndNILLd~-tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemvevMG-~g~eG~~Se~f~~F 1042 (1129)
|+|+|||||||||+||||.+|||+|. ||.+||+||.++|++|..+.+||.||||||+|||++|| .|.||. |
T Consensus 2210 TtAVMSmVGyIlGLGDRHgENILFDs~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG~-------F 2282 (2382)
T KOG0890|consen 2210 TTAVMSMVGYILGLGDRHGENILFDSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEGS-------F 2282 (2382)
T ss_pred HHHHHHHHHHHhcCccccccceeeecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccchh-------H
Confidence 99999999999999999999999997 99999999999999999999999999999999999999 799998 9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCC------------hhHHHHHHHHhCCCCC----HHHHHHHHHHHH
Q 045995 1043 KVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGG------------PRTIQNLRKRFHLSLT----EEQCVSLVLSLI 1106 (1129)
Q Consensus 1043 r~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~------------~~~I~~LrdRF~L~LS----eeeA~~~v~~LI 1106 (1129)
++.|+.++.++|+|.+.++++++.|+++|+.+|... ...|..+++|++.-+. .-....++..||
T Consensus 2283 rk~cEiTLrLlR~n~e~LMSiL~tF~~DPlvew~~~~k~~s~~~i~e~~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI 2362 (2382)
T KOG0890|consen 2283 RKVCEITLRLLRKNRETLMSILETFVYDPLVEWNRPSKGRSPKKINEDRLVIGRIRGRLQGAMKVDGLPLSVEGQASSLI 2362 (2382)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHhCchhhccCcccCCCcCcccchHHHHhHHHHHHhccCcCCCCccchhhHHHHHH
Confidence 999999999999999999999999999999988631 1346778899987332 223556889999
Q ss_pred HHHhh-chhhhhHHHHH
Q 045995 1107 SSSLD-AWRTRQYDYYQ 1122 (1129)
Q Consensus 1107 ~~S~~-s~~Tr~YD~fQ 1122 (1129)
++|++ .-...+|-+|-
T Consensus 2363 ~eATseenL~~MYIGW~ 2379 (2382)
T KOG0890|consen 2363 EEATSEENLSEMYIGWM 2379 (2382)
T ss_pred HHhcCHHHHHHHHhhhh
Confidence 99998 77788888774
No 30
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=2.7e-47 Score=401.34 Aligned_cols=207 Identities=31% Similarity=0.510 Sum_probs=167.4
Q ss_pred eEEEEEecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCC---------
Q 045995 866 LRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPN--------- 936 (1129)
Q Consensus 866 ~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~--------- 936 (1129)
.|+||||+|||||||+++||++++||.+|++++...++++|.|+|+++++||||||+++.|+++|.+++..
T Consensus 1 ~y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~ 80 (235)
T PF00454_consen 1 EYSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNP 80 (235)
T ss_dssp -EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC-
T ss_pred CceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhcccccccccccccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999987621
Q ss_pred -----------------CCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecC-CCCEEEee
Q 045995 937 -----------------ITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHID 998 (1129)
Q Consensus 937 -----------------i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~-tG~lfHID 998 (1129)
...+.+||...+... ..|..++++|+.|+|+|||+|||||+||||++||||+. +|+++|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~~g~~~hID 159 (235)
T PF00454_consen 81 SRKYKAKLFEKQSSKVPKDGLRQYFLKSFPSA-EEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKKTGELIHID 159 (235)
T ss_dssp -----------------TTHHHHHHHHHSCTT-HHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ETTSEEEE--
T ss_pred ccccccccccccccccccchHHHHHHhcCCCh-hhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccccceeeeEE
Confidence 135778888877544 55667999999999999999999999999999999955 99999999
Q ss_pred ccccccCCCCCCCCCCCCccCcHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCC
Q 045995 999 FGFMLSNSPGGVNFESAPFKLTRELLEVMDSDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFK 1076 (1129)
Q Consensus 999 FGfILg~~p~~~~~E~vPFRLTkemvevMG~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~ 1076 (1129)
||++|+ ++...++|.||||||++|+++||.. -.+...++.|+..|+.++.+||+|.+.|++++++|+.+++++|+
T Consensus 160 fg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~--l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 160 FGFIFG-GKHLPVPETVPFRLTRNMVNAMGGY--LGPSGVEGLFRSSCEAILRALRRNKDLLLSLLELFLRDPLIDWR 234 (235)
T ss_dssp HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTS--SSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTSCSTTSS
T ss_pred eHHhhh-ccccCCCCCCCeEeCHHHHHHHhcc--CCCchhHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCCCCC
Confidence 999999 6666789999999999999999720 03456789999999999999999999999999999999999996
No 31
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=3.1e-45 Score=395.18 Aligned_cols=218 Identities=17% Similarity=0.250 Sum_probs=198.4
Q ss_pred HHhheeeeecccCCCCceEEEEEe--cCCchhhHHHHHHHHHHHHHHHHHc----CCCCCcCCcEEEEccCCCceeeecc
Q 045995 849 KERIRKASAYGKSPGWDLRSVIVK--SGDDCRQEHLAVQLISHFYDIFQEA----GLPLWLRPYEVLVTSSYTALIETIY 922 (1129)
Q Consensus 849 k~RpRk~S~~G~~~~g~~~svI~K--~GDDLRQDqL~mQLi~lmn~Ilkke----~LdL~L~pY~VLpts~~~GLIE~V~ 922 (1129)
.++||+++++|+ ||+.|.+++| +++|+|+|+++||++++||.+|++. .+++.+++|.|+|+++++|||||++
T Consensus 15 ~~~pkri~i~gs--dG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viPLs~~~gLie~~~ 92 (253)
T cd05163 15 GYCYRRLTIRGH--DGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVPLSPQIRLVEDDP 92 (253)
T ss_pred CCcCcEEEEECC--CCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEEcCCccceEEECC
Confidence 368999999999 8999999999 6789999999999999999999853 6789999999999999999999999
Q ss_pred CchhHHHHHHh----C-------CCCCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecC-
Q 045995 923 DTASLHSIKSR----Y-------PNITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDE- 990 (1129)
Q Consensus 923 ns~SL~~I~k~----~-------~~i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~- 990 (1129)
++.|+++|.+. + -....|++||..++.... .|+.++.+|++|+|++|+++||||+||||++||||+.
T Consensus 93 ~~~tl~~i~~~~~~~~~~i~~~~~p~~~l~~~~~~~~~~~~-~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~ 171 (253)
T cd05163 93 SYISLQEIYEDKLEIYNEIQKDMVPDTILKNYILSTFPTYQ-DYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRD 171 (253)
T ss_pred CCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcC
Confidence 99999988752 1 111368999999886644 4567899999999999999999999999999999998
Q ss_pred CCCEEEeeccccccCCCCC-CCCCCCCccCcHHHHHHHc-CCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 045995 991 EGHIIHIDFGFMLSNSPGG-VNFESAPFKLTRELLEVMD-SDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQ 1068 (1129)
Q Consensus 991 tG~lfHIDFGfILg~~p~~-~~~E~vPFRLTkemvevMG-~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~ 1068 (1129)
+|+++|||||++|+++... .+||.||||||++|+++|| .|++|. |+..|+.++.+||++...|++++++++
T Consensus 172 tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g~~g~eG~-------f~~~~~~~~~~Lr~~~~~l~~~L~~fi 244 (253)
T cd05163 172 TGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIGPIGLEGI-------LTSSMMAIARCLTEPEFDLENALQLFI 244 (253)
T ss_pred CCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhCCcCcCCc-------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999998776 4899999999999999999 699998 999999999999999999999999999
Q ss_pred cCCCCCCC
Q 045995 1069 DSGFPCFK 1076 (1129)
Q Consensus 1069 ~s~lPcf~ 1076 (1129)
.+++-+|.
T Consensus 245 ~Dpl~~W~ 252 (253)
T cd05163 245 RDELIAWH 252 (253)
T ss_pred cChhhhhc
Confidence 99998874
No 32
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.4e-42 Score=433.49 Aligned_cols=221 Identities=26% Similarity=0.428 Sum_probs=204.2
Q ss_pred HHhheeeeecccCCCCceEEEEEe-cCCchhhHHHHHHHHHHHHHHHHHc----CCCCCcCCcEEEEccCCCceeeeccC
Q 045995 849 KERIRKASAYGKSPGWDLRSVIVK-SGDDCRQEHLAVQLISHFYDIFQEA----GLPLWLRPYEVLVTSSYTALIETIYD 923 (1129)
Q Consensus 849 k~RpRk~S~~G~~~~g~~~svI~K-~GDDLRQDqL~mQLi~lmn~Ilkke----~LdL~L~pY~VLpts~~~GLIE~V~n 923 (1129)
..-|+.+.-.|+ +|+.|.-+|| ++||||||..|.|+|.++|.+|+.. +++|.|+||+|||+++..|+||||.|
T Consensus 2456 inaPkiI~c~gS--DG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPls~~sGvlEwv~~ 2533 (2806)
T KOG0892|consen 2456 INAPKVITCVGS--DGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPLSPKAGVLEWVTN 2533 (2806)
T ss_pred ccCCeEEEEEcc--CchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeecCcccceeecccC
Confidence 456888999999 8999999999 7799999999999999999999875 79999999999999999999999999
Q ss_pred chhHHHHHH-----h---CC-C---------------------------------CCcHHHHHHHHhCCCChHHHHHHHH
Q 045995 924 TASLHSIKS-----R---YP-N---------------------------------ITSLRDFFVAKYQENSPSFKLAQRN 961 (1129)
Q Consensus 924 s~SL~~I~k-----~---~~-~---------------------------------i~sL~~~f~~~f~~~s~~f~~ar~n 961 (1129)
+++|+++.- . |+ + -+.++.||..+|.++..||. +|.+
T Consensus 2534 tiplgeyLv~~~~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEkF~dP~~WFe-krla 2612 (2806)
T KOG0892|consen 2534 TIPLGEYLVVESGGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEKFPDPADWFE-KRLA 2612 (2806)
T ss_pred CeehhhhhcccCCccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHhcCCHHHHHH-HHHH
Confidence 999998765 2 21 0 13678889999998888885 8999
Q ss_pred HHHhhhhHHHHHhhhccCCCCCCcceecC-CCCEEEeeccccccCCCCCCCCCCCCccCcHHHHHHHc-CCCCCCCchhH
Q 045995 962 FVESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMD-SDAEGLPSEFF 1039 (1129)
Q Consensus 962 FirSlAgYSVvtYILGIGDRHndNILLd~-tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemvevMG-~g~eG~~Se~f 1039 (1129)
|++|.|+-||||||||+||||..|||||. +|++||||+|.+|..|.....||.||||||+++|++|| .|++|+
T Consensus 2613 YTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilptPE~VPFRLTRDiVdgmGItGveGv----- 2687 (2806)
T KOG0892|consen 2613 YTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGV----- 2687 (2806)
T ss_pred HHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCCCCCcccceeehhhccccCccCchHH-----
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999 799998
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCCh
Q 045995 1040 DYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGP 1079 (1129)
Q Consensus 1040 ~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~ 1079 (1129)
||+.|+.+|.+||++.+.++++|++++++|+-.|.-.|
T Consensus 2688 --FrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msp 2725 (2806)
T KOG0892|consen 2688 --FRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSP 2725 (2806)
T ss_pred --HHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcH
Confidence 99999999999999999999999999999998887544
No 33
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=100.00 E-value=8.4e-38 Score=361.04 Aligned_cols=228 Identities=18% Similarity=0.279 Sum_probs=180.7
Q ss_pred EEEEEecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCCCcHHHHHHH
Q 045995 867 RSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNITSLRDFFVA 946 (1129)
Q Consensus 867 ~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i~sL~~~f~~ 946 (1129)
|.||||.| ||||||+++|+|++|++||+++++||+|+||+||+||.+.||||+|++. ++.+|.+. .|.+||..
T Consensus 1052 ~~iIyK~g-DLRQDQLVLQmIrLMDrLLKkEnLDLKLTPYRVLATG~dsGLIEfVps~-tLAsI~~~-----~Il~YLr~ 1124 (1374)
T PTZ00303 1052 CMFLYKRE-NVERDQLMCISSRLLQMLLSSEIGNAEMLDYSVLPLSCDSGLIEKAEGR-ELSNLDNM-----DIASYVLY 1124 (1374)
T ss_pred eeEEEecC-cHHHHHHHHHHHHHHHHHHHhcCCCccccceEEEeccCCcccEEEecch-HHHHhhhh-----HHHHHHHh
Confidence 89999997 9999999999999999999999999999999999999999999999975 78888653 48888873
Q ss_pred HhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCCCCCCCCCCccCcHHHHHH
Q 045995 947 KYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEV 1026 (1129)
Q Consensus 947 ~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemvev 1026 (1129)
.. . .+++||++|||||||+||||||||||||||||+.+|||||||||||||+.+.-...-+.|.||...|+++
T Consensus 1125 --~~-t----~~~~NFi~S~AGYsViTYILgIgDRHngNILId~dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~ea 1197 (1374)
T PTZ00303 1125 --RG-T----RSCINFLASAKLFLLLNYIFSIGDRHKGNVLIGTNGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAA 1197 (1374)
T ss_pred --cC-c----HHHHHHHHHHHHHHHHHHHhccCcccCCceeEcCCCCEEEEecceeecCchhhhccCCCceehhHHHHHH
Confidence 21 1 3578999999999999999999999999999999999999999999999885545558899999999887
Q ss_pred Hc--C-----------------------------CCCC-------------CCchhHHHHHHHHHHHHHHHHhhhHHHHH
Q 045995 1027 MD--S-----------------------------DAEG-------------LPSEFFDYFKVLCIQGFLTCRKHAERIIL 1062 (1129)
Q Consensus 1027 MG--~-----------------------------g~eG-------------~~Se~f~~Fr~lc~~af~aLRk~a~lIi~ 1062 (1129)
++ . +.+| ..-+.-..|.......|..+|-++..+..
T Consensus 1198 v~~~q~~~~~~~~~~~~~~~~~~~~g~~s~~~~s~~~~~~~pa~p~~~~e~ss~~~~~~f~~~aa~wf~~vrp~a~i~~~ 1277 (1374)
T PTZ00303 1198 VEQCQQRQCSCFAGPSPAATSSRARGCASPPGSSGSGGCGSPASPTKAPEPSSAEIREAFFSSAAEWFVHVRPFAAVFYE 1277 (1374)
T ss_pred HHHHHhhhcccccCCCCccccccccCCCCCCCCCCCCCcCCCCCcccCCCCcchHHHHHHHHHHhhHheeechHHHHHHH
Confidence 65 1 0111 11245677888888889999999988888
Q ss_pred HHHHhhcC-CCCCCCCChhH-HHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 045995 1063 LVEMLQDS-GFPCFKGGPRT-IQNLRKRFHLSLTEEQCVSLVLSLISSSLD 1111 (1129)
Q Consensus 1063 LlelM~~s-~lPcf~~~~~~-I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~ 1111 (1129)
|+...+.- .+| .. ... ++.+---|+-+.+++.+...|-.-+.+|++
T Consensus 1278 l~~~~v~r~~~~-~~--~~e~~~~~nt~f~r~as~~s~~~~f~~~~k~s~~ 1325 (1374)
T PTZ00303 1278 LWLYAVHRHTVP-YN--DAEMLNMLNTLFDRHASQTSSASKFSTTMKESVN 1325 (1374)
T ss_pred HHHHHHHHhcCC-cc--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 88766643 333 22 222 233333455566666666666666666665
No 34
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=99.94 E-value=3e-28 Score=315.73 Aligned_cols=237 Identities=25% Similarity=0.354 Sum_probs=201.2
Q ss_pred CCCccccCCCCCcchhccccchHHHHHhheeeeecccCCCCceEEEEEecCCchhhHHHHHHHHHHHHHHHHHc----CC
Q 045995 824 DAKPRANGGIPRATDALSGELWEVKKERIRKASAYGKSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEA----GL 899 (1129)
Q Consensus 824 ~~~~~i~gi~p~~s~~~~selw~~kk~RpRk~S~~G~~~~g~~~svI~K~GDDLRQDqL~mQLi~lmn~Ilkke----~L 899 (1129)
.+-++|.++.+.. .-..+++|||+..+.|+ +|+.|.+++|+++|+|||+++||++.+||.++..+ .+
T Consensus 1954 ~~~i~i~~f~~~~-------~vitskqRprkl~i~gs--~g~d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr 2024 (2341)
T KOG0891|consen 1954 KPIIRIQSFEPKF-------NVITSKQRPRKLVIRGS--DGKDYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRR 2024 (2341)
T ss_pred ceEEehhhccHHH-------HHHHHHhhhHHHhhccc--chhhHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHH
Confidence 4455555554332 33458899999999999 89999999999999999999999999999999876 56
Q ss_pred CCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCCC----------------------------------------c
Q 045995 900 PLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNIT----------------------------------------S 939 (1129)
Q Consensus 900 dL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i~----------------------------------------s 939 (1129)
.+.+..|.|+|.+++.|+|+||+++.++|.+.+.+.+.. .
T Consensus 2025 ~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k~i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~d 2104 (2341)
T KOG0891|consen 2025 NLTIQRYSVIPLSPDSGLIGWVPNCDTLHTLIREYREKKKIPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDD 2104 (2341)
T ss_pred HHHHHHhhhcCCCCCCceeeeecccccHHHHHHHHHHhhccCCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHH
Confidence 899999999999999999999999999999988752110 0
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecC-CCCEEEeeccccccCCCCCC-CCCCCCc
Q 045995 940 LRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFMLSNSPGGV-NFESAPF 1017 (1129)
Q Consensus 940 L~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~-tG~lfHIDFGfILg~~p~~~-~~E~vPF 1017 (1129)
++..+..+ ...+..|...+.+|++|+|++|+++||+|+||||+.|+|++. +|+++|||||.+|+...... .||.+||
T Consensus 2105 l~~~lwlk-S~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pf 2183 (2341)
T KOG0891|consen 2105 LYKVLWLK-SPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPF 2183 (2341)
T ss_pred HHHHHHHh-CCChhHHHHHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccH
Confidence 00001000 022344566789999999999999999999999999999999 99999999999999998875 7899999
Q ss_pred cCcHHHHHHHc-CCCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCC
Q 045995 1018 KLTRELLEVMD-SDAEGLPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKG 1077 (1129)
Q Consensus 1018 RLTkemvevMG-~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~ 1077 (1129)
|||+.++.+|- .|.+|+ |+..|..++.++|.+.+.+++.++.++.+++-.|+.
T Consensus 2184 RlTrmli~amev~gl~g~-------~~~t~e~v~~~lr~~~~sl~a~leafvydplinwr~ 2237 (2341)
T KOG0891|consen 2184 RLTRMLINAMEVTGIEGT-------YRITCEHVMRVLRTNKESLMAVLEAFVYDPLINWRL 2237 (2341)
T ss_pred HHHHHHHHhHHHHhhhhH-------HHHHHHHHHHhhcCChHHHHHHHHhhhcccchhhhc
Confidence 99999999998 678887 999999999999999999999999999999988874
No 35
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.6e-19 Score=212.92 Aligned_cols=204 Identities=32% Similarity=0.477 Sum_probs=170.5
Q ss_pred cchhhhc---cccchhhhhhhhhhhhHHhhhccCCCccccccCchhhHHHHhhcCCCCCcccccChhhHHHHHhhccCCC
Q 045995 226 RDALLFR---KSVEKDEEESEKDGFFKRLLRDSRGEDEEMTSSSEGFFKRLLRDSKGDDDELMSSSEGFFKKLFRDSKSD 302 (1129)
Q Consensus 226 r~~~~~r---~~~~~~~~~~~~~gffkrl~rd~~~~~~~~~~~~egffkr~l~d~~~~~~e~~~~~egffkrl~rd~k~~ 302 (1129)
-+++|.| ++.+..++.+..+|+|||++||.+++.++... ||+++|+.+|-++++...+++|+|+++|.++|
T Consensus 27 ~e~~~~r~~~s~~~~~~Ls~~~~~~~~~~v~~~~~e~~~~~~----f~~~~~~~~k~~~~~~~~ns~~~~~~~~~~s~-- 100 (847)
T KOG0903|consen 27 SEGFFKRLGESKGPASELSSSSDGVFKRLVRDPLVEEEALGA----FFKELLRKSKLEHEEVNKNSEGTFLELFNSSK-- 100 (847)
T ss_pred CccccccccccCCchhhhhHhhhhhhhhhccChhhhHhhhhH----HHHHHHhhhhhhhcccccccccchHHHHhhcc--
Confidence 3466666 77778899999999999999999999998765 99999999999999999999999999999999
Q ss_pred ccccccccccccccchhHHHHHhhhhhccccCCCCCCCCccchhhhhhcCCCCchhhhhhhhHHHhhhhhccccCCCCCC
Q 045995 303 FDDKSVSKSLEDDEKDGFFKKFFKEKFEDKKDGSHRNEGEEVVNIEEKCSKSTEDDEKEGFFKKFFKEKFEDKKDGSHRN 382 (1129)
Q Consensus 303 ~~~~~~~~~~~~~~~~gff~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ed~~kegffrk~fk~k~edkkdg~~k~ 382 (1129)
++.+|...+.+..++||.+++||++.+|+.-+.++++..... --++.+.+...|++||.++|++|..|++.= -+.
T Consensus 101 -~~~~v~~~l~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~g~~---~~~~~~~~~~~k~~~l~~l~~~k~~d~~~I-~~~ 175 (847)
T KOG0903|consen 101 -EDDKVPSELDDEDKDGFLKKLFREKHDEKRLALEKNEANGTQ---YIDSRSGLSTPKQKYLKNLFKEKLYDGKNI-SKA 175 (847)
T ss_pred -cCCCCchhhcCccchhhHHHHhcCCChHhhhhhhhcccCCcE---EEeccccCCCccchhHHHHHHHHhcccccc-ccc
Confidence 333689999999999999999999999999998888765544 456779999999999999999999998862 222
Q ss_pred cchhhhccccccCCCCcchhhhhhHHHhhhcccccccCCCCCCCCCCCCccccCCchhhHHHHhhhcCCCCccc
Q 045995 383 EDEEVVNTEEKCSKSTEDDEKEGFFRKFFKEKFEDKKDGNEKNDEGNSGIEEEESSDFSLFRRLFRVHPEDPKR 456 (1129)
Q Consensus 383 ~~~~~~~~~~~~~~~~e~~~~~~~fr~lf~~~~ed~k~~~~~~~~~~~~~~e~~~~~~~~frrlfr~~p~~~~~ 456 (1129)
+. ...+ +.+.+.++..|||+|+-||||.+-+..+ .|++|+.+|||+++|++.-....+
T Consensus 176 ~~-------~~~~-~~~~~~~~~~grr~~~~~~ed~~~~~~~--------~~s~p~~~n~~~~~~~~~~~sve~ 233 (847)
T KOG0903|consen 176 DS-------YSLS-EKDGSDEFSLGRRLFRFHPEDVDFTLEE--------VESSPGLENFFRKLSEDSSDSVED 233 (847)
T ss_pred cc-------hhhh-ccCcchhhhhhhhhhhcCchhccccccc--------cccCcchhhhhhhhhhcccccccc
Confidence 22 1111 2356788999999999999998876555 689999999999999984444333
No 36
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=6.9e-11 Score=156.66 Aligned_cols=208 Identities=20% Similarity=0.250 Sum_probs=174.6
Q ss_pred cchHHHHHhheeeeecccCCCCceE--EEEEecCCchhhHHHHHHHHHHHHHHHHHc----CCCCCcCCcEEEEccCCCc
Q 045995 843 ELWEVKKERIRKASAYGKSPGWDLR--SVIVKSGDDCRQEHLAVQLISHFYDIFQEA----GLPLWLRPYEVLVTSSYTA 916 (1129)
Q Consensus 843 elw~~kk~RpRk~S~~G~~~~g~~~--svI~K~GDDLRQDqL~mQLi~lmn~Ilkke----~LdL~L~pY~VLpts~~~G 916 (1129)
++|-..-.+.||+.+.|+ +|+.| .+..|+--+-|.+.|++|+++++|.++.+. ++.+.+.+..+||+|+..-
T Consensus 3202 eiv~~~~~~~rRl~iRG~--dGk~~~~~~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~r 3279 (3550)
T KOG0889|consen 3202 EIVRGHGMSYRRLYIRGS--DGKIYPFAVQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMR 3279 (3550)
T ss_pred hhhcccceeEEEEEEecc--CCeecceeeecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceE
Confidence 566666778999999999 78888 566677788999999999999999999874 6789999999999999999
Q ss_pred eeeeccCchhHHHHHHhCC-----------------------------------------------CCCcHHHHHHHHhC
Q 045995 917 LIETIYDTASLHSIKSRYP-----------------------------------------------NITSLRDFFVAKYQ 949 (1129)
Q Consensus 917 LIE~V~ns~SL~~I~k~~~-----------------------------------------------~i~sL~~~f~~~f~ 949 (1129)
|+|-.|++.++++|.+.+. ....+++||.+.|+
T Consensus 3280 l~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~ 3359 (3550)
T KOG0889|consen 3280 LVEDKPSSITLQEIYEEYCARNNVSPDDPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFT 3359 (3550)
T ss_pred EecCCcchhhHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcC
Confidence 9999999999999987530 01256788988887
Q ss_pred CCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecC-CCCEEEeeccccccCCCCC-CCCCCCCccCcHHHHHHH
Q 045995 950 ENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFMLSNSPGG-VNFESAPFKLTRELLEVM 1027 (1129)
Q Consensus 950 ~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~-tG~lfHIDFGfILg~~p~~-~~~E~vPFRLTkemvevM 1027 (1129)
. ...||..+++|+..+|..++++|++.++-|-++-+++.+ +|.++--||-+-...+... -+-|+||||||+++.+.+
T Consensus 3360 ~-~~d~w~frk~f~~qla~~~~~~~~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i 3438 (3550)
T KOG0889|consen 3360 N-YSDFWTFRKQFTDQLAVFSFMEYMLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFI 3438 (3550)
T ss_pred C-hhhhhhhHhHHHHHHHHHHHHHHHHhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhh
Confidence 6 345778999999999999999999999999999999999 8999999996666444443 355999999999999999
Q ss_pred c-CCCCCCCchhHHHHHHHHHHHHHHHHhhhHHH
Q 045995 1028 D-SDAEGLPSEFFDYFKVLCIQGFLTCRKHAERI 1060 (1129)
Q Consensus 1028 G-~g~eG~~Se~f~~Fr~lc~~af~aLRk~a~lI 1060 (1129)
| .+++|. +--.++.+-.+|=++-..+
T Consensus 3439 ~~~~veg~-------l~~s~~a~ar~l~~p~~~l 3465 (3550)
T KOG0889|consen 3439 GDFGVEGL-------LAGSMMAIARCLIEPDFEL 3465 (3550)
T ss_pred cchhhhhh-------hHHHHHHHHHHHhCCccch
Confidence 9 788887 6666777777777764433
No 37
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=99.00 E-value=3.3e-10 Score=115.33 Aligned_cols=93 Identities=19% Similarity=0.238 Sum_probs=83.9
Q ss_pred cchhhhhhcc-cCCCHHHHHHHhhh-cCCcchHHHHHhhhccCCCCCchhhhhheeeeeeeCC--ChhHHHHHHHHhhhc
Q 045995 32 NGWLIRFFDS-SFFCEWIAVSYLYK-HDHAGVRDYLCNRMYTLPLTGIEGYLFQICYMMIHKP--SPSLDKFVIDICSKS 107 (1129)
Q Consensus 32 ~~~LlrlF~S-~~Fd~~lai~YL~~-~~~~Gv~~YLcnrL~~~~~~~iEFYLPQLvhm~I~~~--s~sLe~fLl~~C~kS 107 (1129)
-.-+..+... ...+...|+.+|-. +.+++|++|.+++|.+++++++.|||||||+.+-..+ ...|..||+++|.+|
T Consensus 56 ~~e~~~lL~~W~~~~~~~aL~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~~~~~~L~~fLl~ra~~s 135 (152)
T cd00864 56 VSELYQLLKWWAPLSPEDALELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEPYLDSYLARFLLERALKS 135 (152)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcC
Confidence 3455667777 88999999999998 6899999999999999999999999999999986555 678999999999999
Q ss_pred HhHHHHHHHHHHHhhcC
Q 045995 108 LKIALKVHWFLMAELED 124 (1129)
Q Consensus 108 ~~fALk~~WlL~A~leD 124 (1129)
.+||..++|+|++.++|
T Consensus 136 ~~~~~~l~W~L~~e~~~ 152 (152)
T cd00864 136 QRLGHQLYWNLKSEIHD 152 (152)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999998875
No 38
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=98.74 E-value=7.2e-09 Score=108.62 Aligned_cols=91 Identities=24% Similarity=0.299 Sum_probs=76.0
Q ss_pred hhhhhcc-cCCCHHHHHHHhhh-cCCcchHHHHHhhhccCCCCCchhhhhheeeeeeeC--CChhHHHHHHHHhhhcHhH
Q 045995 35 LIRFFDS-SFFCEWIAVSYLYK-HDHAGVRDYLCNRMYTLPLTGIEGYLFQICYMMIHK--PSPSLDKFVIDICSKSLKI 110 (1129)
Q Consensus 35 LlrlF~S-~~Fd~~lai~YL~~-~~~~Gv~~YLcnrL~~~~~~~iEFYLPQLvhm~I~~--~s~sLe~fLl~~C~kS~~f 110 (1129)
.+.+... ...++..|+.+|-. +.+++|+.|.+++|.+++++++.+||||||+.+-.. ....|..||+.+|.+|..|
T Consensus 65 ~~~ll~~W~~~~p~~AL~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e~~~~s~L~~fLl~ra~~s~~i 144 (184)
T PF00613_consen 65 AYQLLLQWPPISPEDALELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYEPYHDSPLARFLLRRALKSPRI 144 (184)
T ss_dssp HHHHHHTSHCTTHHHHHHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGSSSSS-HHHHHHHHHHHHSHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheeccccccHHHHHHHHHHHhCHHH
Confidence 3444444 55788999999998 688999999999999999999999999999998766 4567999999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 045995 111 ALKVHWFLMAELEDS 125 (1129)
Q Consensus 111 ALk~~WlL~A~leD~ 125 (1129)
|..++|+|++.++|.
T Consensus 145 a~~l~W~L~~e~~~~ 159 (184)
T PF00613_consen 145 AHQLFWYLKAELHDP 159 (184)
T ss_dssp HHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHhccCc
Confidence 999999999999653
No 39
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=98.70 E-value=2e-08 Score=105.38 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=77.7
Q ss_pred cCCCHHHHHHHhhh-cCCcchHHHHHhhhccCCCCCchhhhhheeeeeeeC--CChhHHHHHHHHhhhcHhHHHHHHHHH
Q 045995 42 SFFCEWIAVSYLYK-HDHAGVRDYLCNRMYTLPLTGIEGYLFQICYMMIHK--PSPSLDKFVIDICSKSLKIALKVHWFL 118 (1129)
Q Consensus 42 ~~Fd~~lai~YL~~-~~~~Gv~~YLcnrL~~~~~~~iEFYLPQLvhm~I~~--~s~sLe~fLl~~C~kS~~fALk~~WlL 118 (1129)
...++..|+.+|-. +.+++|++|-+++|.+++++++.+||||||+.+=.- ....|..||+.+|.+|..||..++|+|
T Consensus 72 ~~~~~~~aL~LL~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E~~~~~~L~~fLl~ra~~s~~~~~~l~W~L 151 (184)
T smart00145 72 APLDPEDALELLSPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYEPYLDSALARFLLERALKNQRLGHFFYWYL 151 (184)
T ss_pred CCCCHHHHHHHhCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 67889999999997 789999999999999999999999999999988544 356799999999999999999999999
Q ss_pred HHhhcCCC
Q 045995 119 MAELEDSD 126 (1129)
Q Consensus 119 ~A~leD~~ 126 (1129)
++.++|..
T Consensus 152 ~~e~~~~~ 159 (184)
T smart00145 152 KSELEDPH 159 (184)
T ss_pred HHHccCch
Confidence 99998754
No 40
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=98.41 E-value=2.1e-07 Score=97.13 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=76.1
Q ss_pred cCCCHHHHHHHhhh-cC-CcchHHHHHhhhccCCCCCchhhhhheeeeeeeCCChhHHHHHHHHhhhcHhHHHHHHHHHH
Q 045995 42 SFFCEWIAVSYLYK-HD-HAGVRDYLCNRMYTLPLTGIEGYLFQICYMMIHKPSPSLDKFVIDICSKSLKIALKVHWFLM 119 (1129)
Q Consensus 42 ~~Fd~~lai~YL~~-~~-~~Gv~~YLcnrL~~~~~~~iEFYLPQLvhm~I~~~s~sLe~fLl~~C~kS~~fALk~~WlL~ 119 (1129)
.--++-.|+.||-. +. ++.|.+|-+..|.+++++++-|||||||..+=......|.+||+++|..|..||.+++|.++
T Consensus 66 ~pi~p~~ALell~~~y~~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~~~l~~FLl~~A~~s~~faHql~W~lk 145 (175)
T cd00871 66 APVSPVQALSLFTPQYPGHPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDKMGYVEEYILETAKRSQLFAHQIIWNMQ 145 (175)
T ss_pred CCCCHHHHHHHhCcccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55678899999986 65 89999999999999999999999999999887767778999999999999999999999999
Q ss_pred HhhcCC
Q 045995 120 AELEDS 125 (1129)
Q Consensus 120 A~leD~ 125 (1129)
|.+..-
T Consensus 146 ae~~~d 151 (175)
T cd00871 146 TNCYKD 151 (175)
T ss_pred HhccCC
Confidence 987754
No 41
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=98.38 E-value=2.6e-07 Score=95.82 Aligned_cols=83 Identities=25% Similarity=0.284 Sum_probs=74.3
Q ss_pred cCCCHHHHHHHhhh-cCCcchHHHHHhhhccCCCCCchhhhhheeeeeeeCCC---------hhHHHHHHHHhhhcHhHH
Q 045995 42 SFFCEWIAVSYLYK-HDHAGVRDYLCNRMYTLPLTGIEGYLFQICYMMIHKPS---------PSLDKFVIDICSKSLKIA 111 (1129)
Q Consensus 42 ~~Fd~~lai~YL~~-~~~~Gv~~YLcnrL~~~~~~~iEFYLPQLvhm~I~~~s---------~sLe~fLl~~C~kS~~fA 111 (1129)
...++.-|+.+|-. +.++.|+.|-+++|.+++++++.+||||||+.+=.-.. ..|..||+.+|.+|..||
T Consensus 74 ~~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~~~~~~~~~s~La~fLl~Ral~s~~ig 153 (166)
T cd00870 74 AKIDIEDALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYENLDLSPLPRLDSPLADFLIERALKNPKLA 153 (166)
T ss_pred CCCCHHHHHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHhcCHHHH
Confidence 45678888999987 78999999999999999999999999999997754433 569999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 045995 112 LKVHWFLMAELED 124 (1129)
Q Consensus 112 Lk~~WlL~A~leD 124 (1129)
..+||+|++.++|
T Consensus 154 ~~lfW~Lk~E~~d 166 (166)
T cd00870 154 NFLYWYLKVELED 166 (166)
T ss_pred HHHHHHhhhhccC
Confidence 9999999998876
No 42
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=98.23 E-value=1.8e-06 Score=89.84 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=76.0
Q ss_pred cCCCHHHHHHHhhh-cCCcchHHHHHhhhccCCCCCchhhhhheeeeeeeCC--ChhHHHHHHHHhhhcHhHHHHHHHHH
Q 045995 42 SFFCEWIAVSYLYK-HDHAGVRDYLCNRMYTLPLTGIEGYLFQICYMMIHKP--SPSLDKFVIDICSKSLKIALKVHWFL 118 (1129)
Q Consensus 42 ~~Fd~~lai~YL~~-~~~~Gv~~YLcnrL~~~~~~~iEFYLPQLvhm~I~~~--s~sLe~fLl~~C~kS~~fALk~~WlL 118 (1129)
..-++..|+.+|-. +.+..|++|=+++|.+++++++.+||||||..+=.-. ...|.+||++++..|..||..+||+|
T Consensus 67 ~p~~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLkyE~~~~s~L~~FLl~RAl~n~~i~h~lfW~L 146 (169)
T cd00869 67 APLRPLIALELLLPKFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKFELYLKSALVRFLLSRSLVSLRFAHELYWLL 146 (169)
T ss_pred CCCCHHHHHHHcCCcCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccccCcChHHHHHHHHHhcCHHHHHHHHHHh
Confidence 56788899999997 7889999999999999999999999999999876554 46799999999999999999999999
Q ss_pred HHhhcCC
Q 045995 119 MAELEDS 125 (1129)
Q Consensus 119 ~A~leD~ 125 (1129)
++.++|.
T Consensus 147 k~e~~~~ 153 (169)
T cd00869 147 KDALDDC 153 (169)
T ss_pred HHHccCc
Confidence 9998873
No 43
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=98.15 E-value=3.3e-06 Score=88.07 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=75.7
Q ss_pred cCCCHHHHHHHhhh-cCCcchHHHHHhhhccCCCCCchhhhhheeeeeeeCC--ChhHHHHHHHHhhhcHhHHHHHHHHH
Q 045995 42 SFFCEWIAVSYLYK-HDHAGVRDYLCNRMYTLPLTGIEGYLFQICYMMIHKP--SPSLDKFVIDICSKSLKIALKVHWFL 118 (1129)
Q Consensus 42 ~~Fd~~lai~YL~~-~~~~Gv~~YLcnrL~~~~~~~iEFYLPQLvhm~I~~~--s~sLe~fLl~~C~kS~~fALk~~WlL 118 (1129)
...++..|+.+|-. +.++.|+.|-+++|.+++++++..||||||..+=.-+ ...|..||+.+|-+|..+|..+||+|
T Consensus 67 ~~i~~~~aLeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ral~n~~igh~lfW~L 146 (171)
T cd00872 67 PKLKPEQALELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRALRNQRIGHFFFWHL 146 (171)
T ss_pred CCCCHHHHHHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66788899999997 7889999999999999999999999999999876544 56799999999999999999999999
Q ss_pred HHhhcC
Q 045995 119 MAELED 124 (1129)
Q Consensus 119 ~A~leD 124 (1129)
++.++|
T Consensus 147 ~~E~~~ 152 (171)
T cd00872 147 RSEMHN 152 (171)
T ss_pred HHhhcC
Confidence 999987
No 44
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=97.27 E-value=0.00035 Score=80.51 Aligned_cols=82 Identities=13% Similarity=0.227 Sum_probs=71.6
Q ss_pred hhhhHHHHHHHHhhhcccccccCCccCchHHHHHHHHHHhhhhhcccCCCceeccCCCCceEEEecCccchhhccccCCC
Q 045995 534 AYHESLDFVMSLCDTSYGLVDIFPVEDRKPALRESLAEINLHIAESQNMGGICFPMGKGLYRVVHIPEDEAVLLNSREKA 613 (1129)
Q Consensus 534 ~f~~e~~Fv~aL~~IS~RLv~i~PkeaR~saLraELa~lN~~Lp~~~~~~~v~~Pl~~~~hRIVRIpp~EavVLNSaERa 613 (1129)
-+..|.+|+..|+.||..+...-+++.|+.+|+.+|+.++..+| .++.+|+ +|..+|..|.+++|.|++|+ ++
T Consensus 3 ~l~~q~~~~~~l~~i~~~ik~~~~~~~~~~~l~~~L~~~~~~~~-----~~~~lP~-~p~~~i~~i~~~~~~v~~S~-~~ 75 (352)
T cd00891 3 ELLKQVEVINELKTLAKKVKREKSKSQRKELLREELKKLENNLP-----QEFTLPL-DPRLEIKGLIIEKCKVMDSK-KK 75 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhhhccCC-----CCccCCC-CCceEEEEEeccceEEeccc-cC
Confidence 46789999999999999999644999999999999999998777 3577776 56899999999999999999 57
Q ss_pred CeEEEEEEe
Q 045995 614 PYMICVEVL 622 (1129)
Q Consensus 614 PyLl~VEVL 622 (1129)
|.+|.+..-
T Consensus 76 P~~l~f~~~ 84 (352)
T cd00891 76 PLWLVFKNA 84 (352)
T ss_pred CcEEEEEec
Confidence 999888763
No 45
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=96.75 E-value=0.0021 Score=74.24 Aligned_cols=82 Identities=18% Similarity=0.277 Sum_probs=70.4
Q ss_pred hhhhHHHHHHHHhhhcccccccCCccCchHHHHHHHHHHhhhhhcccCCCceeccCCCCceEEEecCccchhhccccCCC
Q 045995 534 AYHESLDFVMSLCDTSYGLVDIFPVEDRKPALRESLAEINLHIAESQNMGGICFPMGKGLYRVVHIPEDEAVLLNSREKA 613 (1129)
Q Consensus 534 ~f~~e~~Fv~aL~~IS~RLv~i~PkeaR~saLraELa~lN~~Lp~~~~~~~v~~Pl~~~~hRIVRIpp~EavVLNSaERa 613 (1129)
-+..|++|+..|+.|+..+. .++++.|+..|+++|+.|++.++.. .++++|+ +|..+|..|.|++|.||+|+- +
T Consensus 3 ~l~~q~~~~~~L~~~~~~vk-~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~lPl-~P~~~i~~i~~~~~~v~~S~~-~ 76 (354)
T cd05177 3 EFSKETKLISILIDAAEKVK-TASDTRRKEVLKREASRLEDFFQDV---VSCCLPL-NPALRVKGIDADACSYFTSNA-A 76 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHhhhhccCC---CCCccCC-CCCeEEEEEecCccEEehhhc-C
Confidence 35679999999999999999 5899999999999999998877632 3466776 577899999999999999995 9
Q ss_pred CeEEEEEE
Q 045995 614 PYMICVEV 621 (1129)
Q Consensus 614 PyLl~VEV 621 (1129)
|..|.+..
T Consensus 77 Pl~l~f~~ 84 (354)
T cd05177 77 PLKISFIN 84 (354)
T ss_pred CCEEEEEe
Confidence 99998864
No 46
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=95.59 E-value=0.019 Score=66.50 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=68.5
Q ss_pred hhhhHHHHHHHHhhhcccccccCCccCchHHHHHHHHHHhhhhhcccCCCceeccCCCCceEEEecCccchhhccccCCC
Q 045995 534 AYHESLDFVMSLCDTSYGLVDIFPVEDRKPALRESLAEINLHIAESQNMGGICFPMGKGLYRVVHIPEDEAVLLNSREKA 613 (1129)
Q Consensus 534 ~f~~e~~Fv~aL~~IS~RLv~i~PkeaR~saLraELa~lN~~Lp~~~~~~~v~~Pl~~~~hRIVRIpp~EavVLNSaERa 613 (1129)
-|+.|.+++..|+.||..+. -.+++.|+..|+++|+.+.+-+. ...++.+|+ +|..+|.-|.+++|.||+|+- +
T Consensus 3 ~~~~Q~~~~~~L~~i~~~vk-~~~~~~r~~~l~~~L~~~~~~~~---~~~~~~lPl-dP~~~v~~i~~~~~~v~~S~~-~ 76 (354)
T cd00895 3 EFDRQCWLVNVLAKLAQQVR-EAAPSARQGILREGLEEVKQFFS---INGSCRLPL-SPSLLVKGIVPRDCSYFNSNA-V 76 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhcc---CCCCCcCCC-CCCeEEEEEEcCceEEecccC-C
Confidence 36789999999999999999 58899999999999999974332 013466666 577899999999999999976 9
Q ss_pred CeEEEEEEe
Q 045995 614 PYMICVEVL 622 (1129)
Q Consensus 614 PyLl~VEVL 622 (1129)
|.+|.+...
T Consensus 77 Pl~l~f~~~ 85 (354)
T cd00895 77 PLKLSFQNV 85 (354)
T ss_pred CeEEEEEec
Confidence 999988754
No 47
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=95.44 E-value=0.012 Score=74.98 Aligned_cols=106 Identities=22% Similarity=0.296 Sum_probs=87.6
Q ss_pred CccccCCCCCCCCCCccchhhhhhcc----cCCCHHHHHHHhhh-cCCcchHHHHHhhhccCCCCCchhhhhheeeeeee
Q 045995 16 PREITPRTHLTSESSENGWLIRFFDS----SFFCEWIAVSYLYK-HDHAGVRDYLCNRMYTLPLTGIEGYLFQICYMMIH 90 (1129)
Q Consensus 16 ~~~~~~~~~~~s~~~~~~~LlrlF~S----~~Fd~~lai~YL~~-~~~~Gv~~YLcnrL~~~~~~~iEFYLPQLvhm~I~ 90 (1129)
|.+++| -++=+-|.|.++..= .+-...+|+..|.- ++++-|+..-++-|-.++.+++--||||||..+=.
T Consensus 861 PlVL~S-----ap~W~~~~l~~~y~lL~~Wa~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~ 935 (1639)
T KOG0905|consen 861 PLVLAS-----APSWDWGNLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKF 935 (1639)
T ss_pred HHHHhc-----CCCCchhhHHHHHHHHHhccccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 666665 345556666665432 55677899999995 89999999999999999999999999999987753
Q ss_pred C--CChhHHHHHHHHhhhcHhHHHHHHHHHHHhhcCCC
Q 045995 91 K--PSPSLDKFVIDICSKSLKIALKVHWFLMAELEDSD 126 (1129)
Q Consensus 91 ~--~s~sLe~fLl~~C~kS~~fALk~~WlL~A~leD~~ 126 (1129)
. ...+|.+||+++|=.|+.||..+||+|+-.+.|..
T Consensus 936 E~yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d~q 973 (1639)
T KOG0905|consen 936 ELYLKSALVQFLLSRSLVSLQFAHELYWLLKDALDDSQ 973 (1639)
T ss_pred HHhccCHHHHHHHHHHhcchHHHHHHHHHHhhccccce
Confidence 3 45679999999999999999999999999988743
No 48
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=94.62 E-value=0.042 Score=71.58 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=68.0
Q ss_pred HHHHHHhhh--cCCcchHHHHHhhhccCCCCCchhhhhheeeeeeeCCChhHHHHHHHHhhhcHhHHHHHHHHHHHhh
Q 045995 47 WIAVSYLYK--HDHAGVRDYLCNRMYTLPLTGIEGYLFQICYMMIHKPSPSLDKFVIDICSKSLKIALKVHWFLMAEL 122 (1129)
Q Consensus 47 ~lai~YL~~--~~~~Gv~~YLcnrL~~~~~~~iEFYLPQLvhm~I~~~s~sLe~fLl~~C~kS~~fALk~~WlL~A~l 122 (1129)
-.++.+|-- +.||-+-+|-..+|.++|...+=||+||||.++=-...-.++.|++..+++|--||.++-|.++|-+
T Consensus 1336 ~~~l~~l~p~~~~~p~~~~~~~~~l~s~~~~~~~fyvPQiVq~lryDkm~~v~~~il~~a~~s~l~aHqliWnm~~n~ 1413 (1803)
T KOG0902|consen 1336 LGVLDLLTPIRKPHPRLMQYAVRVLRSYSPNEMLFYVPQIVQALRYDKMGYVEEYILWAAGKSQLFAHQLIWNMKANL 1413 (1803)
T ss_pred ccchhhcccccCCCcHHHHHHHHHHHhCChhhhhhhhHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 446777763 5699999999999999999999999999999987777778999999999999999999999999754
No 49
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=94.60 E-value=0.044 Score=63.55 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=67.3
Q ss_pred hhhhhHHHHHHHHhhhcccccccC-CccCchHHHHHHHHHHhh---hhhcccCCCceeccCCCCceEEEecCccchhhcc
Q 045995 533 GAYHESLDFVMSLCDTSYGLVDIF-PVEDRKPALRESLAEINL---HIAESQNMGGICFPMGKGLYRVVHIPEDEAVLLN 608 (1129)
Q Consensus 533 ~~f~~e~~Fv~aL~~IS~RLv~i~-PkeaR~saLraELa~lN~---~Lp~~~~~~~v~~Pl~~~~hRIVRIpp~EavVLN 608 (1129)
..++.|.+|+..|+.|+..+...- +++.|...||+.|+.+-. .+| .++.+|+ +|..+|..|.++++.|++
T Consensus 2 ~~l~~q~~~~~~L~~i~~~~k~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~lP~-dp~~~i~~i~~~~~~v~~ 75 (350)
T cd00896 2 QTLSRQIEFVDRLRKLLKELRSSKIDRPKKIEKLKQLLSSIEYELLLDF-----EPIPLPL-DPSIEITGIIPEESSVFK 75 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHhccccccccCC-----CCCcCCC-CCCeEEEEEecCceEEec
Confidence 356789999999999999999532 356788899999988743 233 3455665 567899999999999999
Q ss_pred ccCCCCeEEEEEEecC
Q 045995 609 SREKAPYMICVEVLKC 624 (1129)
Q Consensus 609 SaERaPyLl~VEVL~~ 624 (1129)
|+ ++|..|.+..-..
T Consensus 76 S~-~~P~~l~f~~~dg 90 (350)
T cd00896 76 SA-LMPLKLTFKTEKG 90 (350)
T ss_pred cc-cCceEEEEEeCCC
Confidence 98 8999999887543
No 50
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=94.33 E-value=0.053 Score=63.25 Aligned_cols=81 Identities=10% Similarity=0.219 Sum_probs=65.0
Q ss_pred hhhhHHHHHHHHhhhcccccccCCc------cCchHHHHHHHHHHhh-hhhcccCCCceeccCCCCceEEEecCccchhh
Q 045995 534 AYHESLDFVMSLCDTSYGLVDIFPV------EDRKPALRESLAEINL-HIAESQNMGGICFPMGKGLYRVVHIPEDEAVL 606 (1129)
Q Consensus 534 ~f~~e~~Fv~aL~~IS~RLv~i~Pk------eaR~saLraELa~lN~-~Lp~~~~~~~v~~Pl~~~~hRIVRIpp~EavV 606 (1129)
-|..|++.+..|+.|+..+.. ++. +.++..|+..|..++. .+| ..+.+|+ +|..+|..|.+++|.|
T Consensus 3 ~~~~q~~~~~~l~~i~~~vk~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~lPl-~P~~~~~~i~~~~~~v 75 (365)
T cd00894 3 DFTQQVQVIEMLQKVTLDIKS-LSAEKYDVSSQVISQLKQKLENLQNLNLP-----ESFRVPY-DPGLRAGALVIEKCKV 75 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHHHhhhccCC-----CCCCCCC-CCceEEEEEEcCceEE
Confidence 367899999999999999985 553 3446789999998874 345 2455665 5778999999999999
Q ss_pred ccccCCCCeEEEEEEe
Q 045995 607 LNSREKAPYMICVEVL 622 (1129)
Q Consensus 607 LNSaERaPyLl~VEVL 622 (1129)
++|+ ++|..|.+...
T Consensus 76 ~~S~-~~Pl~l~f~~~ 90 (365)
T cd00894 76 MASK-KKPLWLEFKCA 90 (365)
T ss_pred Eccc-CCceEEEEECC
Confidence 9999 89999988854
No 51
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=93.99 E-value=0.08 Score=61.54 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHhhhcccccccCCccCchHHHHHHHHHHhhhhhcccCCCceeccCCCCceEEEecCccchhhccccCCCC
Q 045995 535 YHESLDFVMSLCDTSYGLVDIFPVEDRKPALRESLAEINLHIAESQNMGGICFPMGKGLYRVVHIPEDEAVLLNSREKAP 614 (1129)
Q Consensus 535 f~~e~~Fv~aL~~IS~RLv~i~PkeaR~saLraELa~lN~~Lp~~~~~~~v~~Pl~~~~hRIVRIpp~EavVLNSaERaP 614 (1129)
+..|.+|+..|+.|+..+.. +|.+.|+..||.+|+.+...+.. ..+++|+. |..+|..|.+++|.|++|+- .|
T Consensus 4 l~~q~~~~~~l~~i~~~vk~-~~~~~~~~~l~~~l~~~~~~~~~----~~~~lP~~-p~~~~~~i~~~~~~v~~S~~-~P 76 (353)
T cd05166 4 FKKQHKLVNKLGSIAEDVKS-ASESARQHVLRTGLGRVDSFLLQ----NKCRLPLN-PALDVKGIDVRECSYFNSNA-LP 76 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhhhccC----CCCccCCC-CceEEEeEEcCceEEecccc-Cc
Confidence 56789999999999999995 78999999999999999765321 24667764 57789999999999999987 58
Q ss_pred eEEEEE
Q 045995 615 YMICVE 620 (1129)
Q Consensus 615 yLl~VE 620 (1129)
-.|.+.
T Consensus 77 ~~l~f~ 82 (353)
T cd05166 77 LKISFV 82 (353)
T ss_pred eEEEEE
Confidence 888775
No 52
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=92.64 E-value=0.11 Score=60.68 Aligned_cols=82 Identities=11% Similarity=0.142 Sum_probs=65.4
Q ss_pred hhhhHHHHHHHHhhhcccccccC----CccCchHHHHHHHHHHhh-hhhcccCCCceeccCCCCceEEEecCccchhhcc
Q 045995 534 AYHESLDFVMSLCDTSYGLVDIF----PVEDRKPALRESLAEINL-HIAESQNMGGICFPMGKGLYRVVHIPEDEAVLLN 608 (1129)
Q Consensus 534 ~f~~e~~Fv~aL~~IS~RLv~i~----PkeaR~saLraELa~lN~-~Lp~~~~~~~v~~Pl~~~~hRIVRIpp~EavVLN 608 (1129)
.+..|.+++..|+.|+..+...- +++.|+..||+.|+.... .+| ..+.+| .+|..+|..|.+++|.|++
T Consensus 3 ~l~~Q~~~~~~l~~~~~~ik~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~lP-l~P~~~v~~i~~~~~~v~~ 76 (366)
T cd05165 3 DLSKQVEALNKLKKLTDIIKSLSAKYDVKEQVKSQLEQVLRQLANLDLL-----QSFQSP-LNPSLKLGELRIEKCKVMD 76 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHcccchhccc-----ccCCCC-CCCceeEeeeecCceEEeh
Confidence 46789999999999999888542 577889999999987543 455 234455 4688899999999999999
Q ss_pred ccCCCCeEEEEEEe
Q 045995 609 SREKAPYMICVEVL 622 (1129)
Q Consensus 609 SaERaPyLl~VEVL 622 (1129)
|+- .|..|.+..-
T Consensus 77 Sk~-~P~~l~f~~~ 89 (366)
T cd05165 77 SKK-KPLWLVFENA 89 (366)
T ss_pred hhc-CCcEEEEEcc
Confidence 995 6999988753
No 53
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=92.62 E-value=0.66 Score=53.88 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=81.0
Q ss_pred EEEEecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCCCcHHHHHHHH
Q 045995 868 SVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNITSLRDFFVAK 947 (1129)
Q Consensus 868 svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i~sL~~~f~~~ 947 (1129)
.+++|.. +|.-|+....++..+|.-... -.+.+.+++|+.-+.+.|..|||+... ..+
T Consensus 72 kivYKPR-sl~~d~~f~~l~~~ln~~~~~--~~~~l~~~~~l~~g~~YgW~EfI~~~~-----------c~~-------- 129 (370)
T PF13575_consen 72 KIVYKPR-SLSIDKAFNDLLEWLNEKNGT--PSLDLPTPKVLDRGDGYGWQEFIEHEP-----------CNS-------- 129 (370)
T ss_pred EEEEeCc-ccHHHHHHHHHHHHHhhhccc--cccccccceeeeccCcceeEEEecCCC-----------CCC--------
Confidence 5788874 899999999999888864221 136777889999888899999998530 000
Q ss_pred hCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccC
Q 045995 948 YQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 948 f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
.....+|-+-+.++..+.|+||..|=|.+||.-+. +.-+=||+-.+|..
T Consensus 130 --------~~ev~~yY~r~G~llal~y~L~~~DlH~ENIIa~g-~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 130 --------EEEVERYYYRLGVLLALLYLLNGTDLHFENIIASG-EYPVLIDLETLFHP 178 (370)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCCCcccccceEEeC-CCcEEEehhhhCCc
Confidence 01334555667788999999999999999998854 55888999888887
No 54
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=92.04 E-value=0.18 Score=58.88 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=62.8
Q ss_pred hhhhHHHHHHHHhhhcccccccC---CccCchHHHHHHHHHH--hhhhhcccCCCceeccCCCCceEEEecCccchhhcc
Q 045995 534 AYHESLDFVMSLCDTSYGLVDIF---PVEDRKPALRESLAEI--NLHIAESQNMGGICFPMGKGLYRVVHIPEDEAVLLN 608 (1129)
Q Consensus 534 ~f~~e~~Fv~aL~~IS~RLv~i~---PkeaR~saLraELa~l--N~~Lp~~~~~~~v~~Pl~~~~hRIVRIpp~EavVLN 608 (1129)
.++.|.+||..|..|+.-+...- .++.|+..||..|+.- +..+ ..+.+|+ +|..+|..|.+++|.|++
T Consensus 3 ~l~~Q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~lPl-dP~~~v~~i~~~~~~v~~ 75 (362)
T cd05173 3 VLSKQVEALNKLKTLNSLIKLNAVKLSKAKGKEAMHTCLRQSAYREAL------SDLQSPL-NPSIILSELNVEKCKYMD 75 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhcccchhcc------cCCCCCC-CCceEEEEEEcCceEEec
Confidence 45678999999999999887431 5678888899888764 1222 2456665 688999999999999999
Q ss_pred ccCCCCeEEEEEE
Q 045995 609 SREKAPYMICVEV 621 (1129)
Q Consensus 609 SaERaPyLl~VEV 621 (1129)
|+-| |..|.++.
T Consensus 76 S~~~-Pl~l~f~~ 87 (362)
T cd05173 76 SKMK-PLWIVYNN 87 (362)
T ss_pred ccCC-CeEEEEee
Confidence 9999 88887764
No 55
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=91.23 E-value=0.34 Score=56.53 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHhhhcccccccCCccCchHHHHHHHHHHhhhhhcccCCCceeccCCCCceEEEecCccchhhccccCCCC
Q 045995 535 YHESLDFVMSLCDTSYGLVDIFPVEDRKPALRESLAEINLHIAESQNMGGICFPMGKGLYRVVHIPEDEAVLLNSREKAP 614 (1129)
Q Consensus 535 f~~e~~Fv~aL~~IS~RLv~i~PkeaR~saLraELa~lN~~Lp~~~~~~~v~~Pl~~~~hRIVRIpp~EavVLNSaERaP 614 (1129)
+..|.+|+..|..|+..+. -.+...|+..|+.+|+.|.+.+.. ..+.+|+. |..+|..|.+++|.|++|+- .|
T Consensus 4 l~~Q~~~~~~L~~i~~~vk-~~~~~~~~~~l~~~~~~l~~~~~~----~~~~lPl~-p~~~~~~~~~~~c~v~~S~~-~P 76 (353)
T cd05176 4 LEKQTRLVQLLGAVAEKVR-QASSSTRQVVLQEGMERVQSFFQK----NKCRLPLS-PSLVAKELNIKVCSFFSSNA-VP 76 (353)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHhhcCC----CCCCCCCC-cceeEccEehheeEEecccC-Cc
Confidence 5678999999999999999 478899999999999999998863 24556764 57788899999999999997 78
Q ss_pred eEEEE
Q 045995 615 YMICV 619 (1129)
Q Consensus 615 yLl~V 619 (1129)
-.|.+
T Consensus 77 l~l~f 81 (353)
T cd05176 77 LKIAL 81 (353)
T ss_pred eEEEE
Confidence 88875
No 56
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=89.36 E-value=0.31 Score=61.48 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=74.6
Q ss_pred cCCCHHHHHHHhhh-cCCcchHHHHHhhhccCCCCCchhhhhheeeeeeeCCC--hhHHHHHHHHhhhcHhHHHHHHHHH
Q 045995 42 SFFCEWIAVSYLYK-HDHAGVRDYLCNRMYTLPLTGIEGYLFQICYMMIHKPS--PSLDKFVIDICSKSLKIALKVHWFL 118 (1129)
Q Consensus 42 ~~Fd~~lai~YL~~-~~~~Gv~~YLcnrL~~~~~~~iEFYLPQLvhm~I~~~s--~sLe~fLl~~C~kS~~fALk~~WlL 118 (1129)
...++..|+..|=. ++++-|+.|-+.+|.++.++++--||-|||..+=.-|. ..|-.||+.++=...++..-+||+|
T Consensus 607 p~l~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLLqLVQalKyEpylds~L~rFLL~RAL~N~RIGHflFWhL 686 (1076)
T KOG0904|consen 607 PPLSVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLLQLVQALKYEPYLDSALVRFLLKRALRNQRIGHFLFWHL 686 (1076)
T ss_pred CCCCHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccchhHhHHHHHHHHHHhhccccchhhhhhH
Confidence 34567788888875 89999999999999999999999999999999877764 4599999999999999999999999
Q ss_pred HHhhcCC
Q 045995 119 MAELEDS 125 (1129)
Q Consensus 119 ~A~leD~ 125 (1129)
+|..+-.
T Consensus 687 RSEm~~~ 693 (1076)
T KOG0904|consen 687 RSEMAQP 693 (1076)
T ss_pred HHHhccH
Confidence 9988764
No 57
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=87.21 E-value=0.78 Score=51.13 Aligned_cols=129 Identities=17% Similarity=0.146 Sum_probs=73.8
Q ss_pred CCCCCcCCcEEEEccC-CCceee-eccCchhHHHHHHhCCCCCcHHHHHH--HHhCCCChHHHHHHHHHHHhhhhHHHHH
Q 045995 898 GLPLWLRPYEVLVTSS-YTALIE-TIYDTASLHSIKSRYPNITSLRDFFV--AKYQENSPSFKLAQRNFVESMAGYSLVC 973 (1129)
Q Consensus 898 ~LdL~L~pY~VLpts~-~~GLIE-~V~ns~SL~~I~k~~~~i~sL~~~f~--~~f~~~s~~f~~ar~nFirSlAgYSVvt 973 (1129)
-+...+.|+.|+--++ ..|++| ||.+.... ++..-.+.......|+- ..+..... ........-..+.-++|+=
T Consensus 65 ~lGw~~VPpTvlrDGP~G~GmvQlwie~~~~~-~lv~l~~~~~~~~g~~~v~~~~d~~g~-~v~l~h~d~~~l~riaVfD 142 (253)
T TIGR03843 65 ALGWGLVPPTVLRDGPFGPGMVQLWIDPDDDP-DLVDLVPAGEVPEGWLPVLRAEDEEGE-PVVLVHADHPQLRRMAVFD 142 (253)
T ss_pred HhCCCcCCCeeeecCCCCCceEEEeccCCCcc-chhhcccccccCCccccccccccccCc-ceeecccccHHHhhhhhhe
Confidence 4567888999987654 467887 67664331 12111100000001110 00000000 0000112233466789999
Q ss_pred hhhccCCCCCCcceecCCCCEEEeeccccccCCCCCC--CCCCCCccCcHHHHHHHc
Q 045995 974 YLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGV--NFESAPFKLTRELLEVMD 1028 (1129)
Q Consensus 974 YILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~~~--~~E~vPFRLTkemvevMG 1028 (1129)
+++.=-|||.+|||+..+|+++-||=|++|...+++- ...-+=-.|+.+.++.+.
T Consensus 143 i~inNaDRk~GhiL~~~dg~l~~IDHGl~f~~~~klrtvlW~wag~Pls~e~l~~i~ 199 (253)
T TIGR03843 143 ALVNNADRKGGHVLPGPDGRVWGVDHGVCFHVEPKLRTVLWGWAGEPLPAELLADLA 199 (253)
T ss_pred eeeecCCCCCCcEeEcCCCcEEEecCceecCCCCcccccccccccCCCCHHHHHHHH
Confidence 9999999999999999999999999999999987652 112222345666655554
No 58
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.68 E-value=0.25 Score=60.67 Aligned_cols=88 Identities=24% Similarity=0.322 Sum_probs=67.1
Q ss_pred cCCCHHHHHHHhhh-cCCcchHHHHHhhhccCCCCCchhhhhheeeeee--e----------------C----------C
Q 045995 42 SFFCEWIAVSYLYK-HDHAGVRDYLCNRMYTLPLTGIEGYLFQICYMMI--H----------------K----------P 92 (1129)
Q Consensus 42 ~~Fd~~lai~YL~~-~~~~Gv~~YLcnrL~~~~~~~iEFYLPQLvhm~I--~----------------~----------~ 92 (1129)
+..|+.-|+..|-- +.++-|..|.+|||....++++.-||+|||..+. + + |
T Consensus 337 ~~id~~dalellss~f~~~sVrayavsrl~~a~deelllYL~qlvqal~ye~~~~~p~~~~~~~v~s~~~~si~s~~t~p 416 (843)
T KOG0906|consen 337 EEIDVEDALELLSSYFTHPSVRAYAVSRLKGADDEELLLYLLQLVQALKYENGQQLPEEGNPVPVVSEREGSIPSVATTP 416 (843)
T ss_pred ccchhhhhhhhccccccCHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhccCCcccCcCcccccccccccccccCc
Confidence 44455556666654 4789999999999999999999999999974321 1 1 1
Q ss_pred -----C-------------h-hHHHHHHHHhhhcHhHHHHHHHHHHHhhcCCCChh
Q 045995 93 -----S-------------P-SLDKFVIDICSKSLKIALKVHWFLMAELEDSDDNE 129 (1129)
Q Consensus 93 -----s-------------~-sLe~fLl~~C~kS~~fALk~~WlL~A~leD~~~~~ 129 (1129)
+ . .|..||++++..+-.+|=-++|+|...+||...-.
T Consensus 417 l~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~e~Ed~~~~k 472 (843)
T KOG0906|consen 417 LESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKVEIEDTPYSK 472 (843)
T ss_pred cccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEEEecCChHHH
Confidence 0 0 28999999999999999999999999998754433
No 59
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=80.35 E-value=7 Score=49.96 Aligned_cols=106 Identities=20% Similarity=0.185 Sum_probs=79.7
Q ss_pred EEEEecCCchhhHHHHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCceeeeccCchhHHHHHHhCCCCCcHHHHHHHH
Q 045995 868 SVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIYDTASLHSIKSRYPNITSLRDFFVAK 947 (1129)
Q Consensus 868 svI~K~GDDLRQDqL~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~GLIE~V~ns~SL~~I~k~~~~i~sL~~~f~~~ 947 (1129)
.+++|. -+|+-|+...+++..+|.- .....+++++||.-+ +.|..|||+.. + . .+
T Consensus 115 kivYKP-r~l~~d~~f~~~l~~ln~~----~~~~~~~~~~~l~~~-~ygw~EfI~~~-~-------c---~~-------- 169 (825)
T cd04792 115 KLVYKP-RSLSVDALFQELLEWLNSF----LGALPLRTPKVLDRG-DYGWEEFIEHQ-P-------C---QS-------- 169 (825)
T ss_pred EEEECC-CCchHHHHHHHHHHHHHhc----CCccccccceeeecC-CcceEEeecCC-C-------C---CC--------
Confidence 577886 4899999999999988863 222345788888665 56999999842 0 0 00
Q ss_pred hCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCC
Q 045995 948 YQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSP 1007 (1129)
Q Consensus 948 f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p 1007 (1129)
.....+|-+-+.++..+.|+|+.-|=|.+|| |..-.+-|=||+--+|....
T Consensus 170 --------~~e~~~fY~r~G~llal~y~L~~tD~H~ENi-IA~g~~PvlIDlETlf~~~~ 220 (825)
T cd04792 170 --------KEEVERYYYRLGGLLALLYLLNATDLHFENI-IASGEYPVLIDLETLFHPRL 220 (825)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHcCCcccchhhh-eeeCCCceEEeeHHhcCCCc
Confidence 1233556667788999999999999999999 77778899999988887644
No 60
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=77.27 E-value=4.1 Score=50.92 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=27.6
Q ss_pred HHHHhhhccC----CCCCCcceecCCCCEEEeecccccc
Q 045995 970 SLVCYLLQVK----DRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 970 SVvtYILGIG----DRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
|.|-||--+| |=-.||||||.+|||=-.|||.|=|
T Consensus 740 cAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTG 778 (1034)
T KOG0608|consen 740 CAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG 778 (1034)
T ss_pred HHHHHHHhccceecccCccceEEccCCceeeeecccccc
Confidence 4444444443 6678999999999999999999977
No 61
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=75.91 E-value=1.6 Score=53.37 Aligned_cols=29 Identities=38% Similarity=0.767 Sum_probs=25.2
Q ss_pred CCCCCCcceecCCCCEEEeeccccccCCC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSNSP 1007 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~~p 1007 (1129)
+|=|+|||+++.+|+++-+|||.+=--++
T Consensus 289 aDpHpGNi~v~~~g~i~~lDfGi~g~l~~ 317 (517)
T COG0661 289 ADPHPGNILVRSDGRIVLLDFGIVGRLDP 317 (517)
T ss_pred cCCCccceEEecCCcEEEEcCcceecCCH
Confidence 79999999999999999999998744333
No 62
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=71.53 E-value=7.3 Score=46.04 Aligned_cols=84 Identities=12% Similarity=0.173 Sum_probs=57.1
Q ss_pred hhhhhHHHHHHHHhhhcccccccCCccCc-hHHHHHHHHHHhh-hhhcccCCCceeccCCCCceEEEecCccchhhcccc
Q 045995 533 GAYHESLDFVMSLCDTSYGLVDIFPVEDR-KPALRESLAEINL-HIAESQNMGGICFPMGKGLYRVVHIPEDEAVLLNSR 610 (1129)
Q Consensus 533 ~~f~~e~~Fv~aL~~IS~RLv~i~PkeaR-~saLraELa~lN~-~Lp~~~~~~~v~~Pl~~~~hRIVRIpp~EavVLNSa 610 (1129)
+.++.|++++..|..|+..+.. ...+.+ +..+...++.|.+ ++.. ...++.+|+. |..+|..|.+++|.|++|
T Consensus 2 ~~l~~Q~~~~~~L~~~~~~ik~-~~~~~~~k~~~~~l~~~l~~~~~~~--~~~~~~lPl~-P~~~~~~i~~e~c~v~~S- 76 (366)
T cd05175 2 KHLSRQVEAMEKLINLTDILKQ-EKKDETQKVQMKFLVEQMRRPDFMD--ALQGFTSPLN-PAHQLGNLRLEECRIMSS- 76 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHHhcCchhhh--ccCCCCCCCC-CceEEEEEEeccceeech-
Confidence 3567899999999999998884 443443 3334444444422 2221 0124666664 568999999999999999
Q ss_pred CCCCeEEEEEE
Q 045995 611 EKAPYMICVEV 621 (1129)
Q Consensus 611 ERaPyLl~VEV 621 (1129)
-++|-.|..+.
T Consensus 77 ~~~Pl~l~f~~ 87 (366)
T cd05175 77 AKRPLWLNWEN 87 (366)
T ss_pred hcCCeEEEEEc
Confidence 57899988873
No 63
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=66.80 E-value=4.5 Score=49.88 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=25.1
Q ss_pred CCCCCCcceecCCC----CEEEeeccccccCCC
Q 045995 979 KDRHNGNLLLDEEG----HIIHIDFGFMLSNSP 1007 (1129)
Q Consensus 979 GDRHndNILLd~tG----~lfHIDFGfILg~~p 1007 (1129)
+|=|+|||||+.+| +++=||||.+=.-++
T Consensus 284 aDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~ 316 (537)
T PRK04750 284 ADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK 316 (537)
T ss_pred CCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence 89999999999988 999999998854443
No 64
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=64.88 E-value=11 Score=44.58 Aligned_cols=81 Identities=9% Similarity=0.025 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHhhhcccccccCCccCc---hHHHHHHHHHHhhhhhcccCCCceeccCCCCceEEEecCccchhhccccC
Q 045995 535 YHESLDFVMSLCDTSYGLVDIFPVEDR---KPALRESLAEINLHIAESQNMGGICFPMGKGLYRVVHIPEDEAVLLNSRE 611 (1129)
Q Consensus 535 f~~e~~Fv~aL~~IS~RLv~i~PkeaR---~saLraELa~lN~~Lp~~~~~~~v~~Pl~~~~hRIVRIpp~EavVLNSaE 611 (1129)
...|.++|.-|..|+..+...-.++.| +..|+.-|+.-- ...+- ..+.+| .+|..+|..|.+++|.|++|+-
T Consensus 4 l~~q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~l~~~~-~~~~~---~~~~lP-l~p~~~~~~~~~~~~~v~~Sk~ 78 (361)
T cd05174 4 LMKQGEALSKMKALNDFVKLSSQKATKPQTKEDMHVCMKQET-YLEAL---SHLQSP-LSPSIILCEVCVDQCTFMDSKM 78 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcCch-hhhhh---ccCCCC-CCCceEEEEEEcCcEEEEeccC
Confidence 456899999999999998853334445 444444443320 01110 012334 4678899999999999999999
Q ss_pred CCCeEEEEEE
Q 045995 612 KAPYMICVEV 621 (1129)
Q Consensus 612 RaPyLl~VEV 621 (1129)
| |..|.++.
T Consensus 79 ~-Pl~l~f~~ 87 (361)
T cd05174 79 K-PLWIMYKN 87 (361)
T ss_pred C-ceEEEEee
Confidence 9 99888764
No 65
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=62.20 E-value=3 Score=48.09 Aligned_cols=59 Identities=32% Similarity=0.434 Sum_probs=36.7
Q ss_pred HHHHhhhcc----CCCCCCcceecCCCCEEEeeccccccCCCCCCCCCCCCccCcHHHHHHHc
Q 045995 970 SLVCYLLQV----KDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMD 1028 (1129)
Q Consensus 970 SVvtYILGI----GDRHndNILLd~tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemvevMG 1028 (1129)
|.+-||=+. .|=-++|||||++|||=-+||||.=--.......=-.|==|.+|++..=|
T Consensus 155 lAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ 217 (355)
T KOG0616|consen 155 LALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKG 217 (355)
T ss_pred HHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecCcEEEecCCccccChHHhhcCC
Confidence 444455333 58889999999999999999999754432211111123345566665444
No 66
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=60.54 E-value=11 Score=38.77 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.2
Q ss_pred hhcc--CCCCCCcceecCCCCEEEeecccc
Q 045995 975 LLQV--KDRHNGNLLLDEEGHIIHIDFGFM 1002 (1129)
Q Consensus 975 ILGI--GDRHndNILLd~tG~lfHIDFGfI 1002 (1129)
-.|+ ||=|++|||++ +|.+.-||||..
T Consensus 108 ~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a 136 (199)
T TIGR03724 108 KAGIVHGDLTTSNIIVR-DDKLYLIDFGLG 136 (199)
T ss_pred HCCeecCCCCcceEEEE-CCcEEEEECCCC
Confidence 3454 89999999999 899999999864
No 67
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=59.65 E-value=25 Score=37.51 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=47.5
Q ss_pred eeeeccCchhHHHHHHhCCCCCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhcc--CCCCCCcceecCCC--
Q 045995 917 LIETIYDTASLHSIKSRYPNITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQV--KDRHNGNLLLDEEG-- 992 (1129)
Q Consensus 917 LIE~V~ns~SL~~I~k~~~~i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGI--GDRHndNILLd~tG-- 992 (1129)
|+|.++++.+|.++...... ... ..++.+++.+|.+-.--+-.|| ||=|..||||+.++
T Consensus 95 ite~l~~~~~L~~~~~~~~~--------------~~~---~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~ 157 (206)
T PF06293_consen 95 ITEALPGAQDLRDLLQQWEQ--------------LDP---SQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDDGQ 157 (206)
T ss_pred EEEeCCCcccHHHHHHhhcc--------------cch---hhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCCCc
Confidence 56888888888877665311 000 1234555555555555555555 89999999999988
Q ss_pred -CEEEeeccccc
Q 045995 993 -HIIHIDFGFML 1003 (1129)
Q Consensus 993 -~lfHIDFGfIL 1003 (1129)
++.=|||+-+-
T Consensus 158 ~~~~lIDld~~~ 169 (206)
T PF06293_consen 158 YRFYLIDLDRMR 169 (206)
T ss_pred eeEEEEcchhce
Confidence 99999997544
No 68
>PRK14879 serine/threonine protein kinase; Provisional
Probab=59.52 E-value=58 Score=33.76 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=21.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
||=|++|||++ +|.+.=||||..-
T Consensus 119 ~Dl~p~Nil~~-~~~~~liDf~~a~ 142 (211)
T PRK14879 119 GDLTTSNMILS-GGKIYLIDFGLAE 142 (211)
T ss_pred CCCCcccEEEE-CCCEEEEECCccc
Confidence 89999999999 8999999999653
No 69
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=57.54 E-value=7.5 Score=38.60 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=23.6
Q ss_pred hccCCCCCCcceecCCCCEEEeecccccc
Q 045995 976 LQVKDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 976 LGIGDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+-=||=|.+|||++ +|++.-||||++--
T Consensus 109 ~~HgD~~~~Nil~~-~~~~~liDf~~a~~ 136 (170)
T cd05151 109 PCHNDLLPGNFLLD-DGRLWLIDWEYAGM 136 (170)
T ss_pred eecCCCCcCcEEEE-CCeEEEEecccccC
Confidence 34499999999999 78899999998553
No 70
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=56.62 E-value=85 Score=33.11 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=24.6
Q ss_pred cCCCCCCcceecCCCCEEEeeccccccC
Q 045995 978 VKDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 978 IGDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
-||-+++||||+.+|.+.=+|||+....
T Consensus 126 h~di~p~nili~~~~~~~l~d~g~~~~~ 153 (261)
T cd05034 126 HRDLAARNILVGENLVCKIADFGLARLI 153 (261)
T ss_pred cCCcchheEEEcCCCCEEECccccceec
Confidence 4899999999999999999999986543
No 71
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=56.28 E-value=13 Score=44.64 Aligned_cols=26 Identities=38% Similarity=0.738 Sum_probs=23.7
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=|++||||+.+|++.=||||.+=.
T Consensus 281 ~D~hPgNilv~~~g~i~liDfG~~~~ 306 (437)
T TIGR01982 281 ADLHPGNIFVLKDGKIIALDFGIVGR 306 (437)
T ss_pred CCCCcccEEECCCCcEEEEeCCCeeE
Confidence 59999999999999999999998743
No 72
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=53.43 E-value=1.5e+02 Score=37.28 Aligned_cols=69 Identities=33% Similarity=0.474 Sum_probs=42.5
Q ss_pred HHhhhccC----CCCCCcceecCCCCEEEeecccc--ccCCCCC-CCC--------CCCCccCcHHHH--HHHcCCCCCC
Q 045995 972 VCYLLQVK----DRHNGNLLLDEEGHIIHIDFGFM--LSNSPGG-VNF--------ESAPFKLTRELL--EVMDSDAEGL 1034 (1129)
Q Consensus 972 vtYILGIG----DRHndNILLd~tG~lfHIDFGfI--Lg~~p~~-~~~--------E~vPFRLTkemv--evMG~g~eG~ 1034 (1129)
+-||=+.| |=-++|||||.+|||-=.|||-+ |+-.... .++ .+.-|.=|.+|| ++|..+.-|.
T Consensus 187 leylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~ 266 (604)
T KOG0592|consen 187 LEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGP 266 (604)
T ss_pred HHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCc
Confidence 44554444 66689999999999999999964 4433222 011 124477777776 4565444466
Q ss_pred CchhHH
Q 045995 1035 PSEFFD 1040 (1129)
Q Consensus 1035 ~Se~f~ 1040 (1129)
.|+.|.
T Consensus 267 ~sDiWA 272 (604)
T KOG0592|consen 267 SSDLWA 272 (604)
T ss_pred ccchHH
Confidence 666554
No 73
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=53.15 E-value=11 Score=43.65 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=31.8
Q ss_pred CCceEEEecCccchhhccccCCCCeEEEEEEecCC
Q 045995 591 KGLYRVVHIPEDEAVLLNSREKAPYMICVEVLKCE 625 (1129)
Q Consensus 591 ~~~hRIVRIpp~EavVLNSaERaPyLl~VEVL~~d 625 (1129)
+|..+|+.|.+++|.||+|+-|+|++|..++....
T Consensus 5 ~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~ 39 (311)
T cd05167 5 NPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRG 39 (311)
T ss_pred CCceEEEEEEccccEEeccCCCCceEEEEEecCCC
Confidence 57889999999999999999999999999997643
No 74
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=52.81 E-value=8.6 Score=40.09 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=|++||||+ +|++.=||||.+-.
T Consensus 142 rDlkP~NIll~-~~~~~liDFG~a~~ 166 (190)
T cd05145 142 GDLSEYNILYH-DGKPYIIDVSQAVE 166 (190)
T ss_pred CCCChhhEEEE-CCCEEEEEccccee
Confidence 79999999999 89999999998743
No 75
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=52.51 E-value=1.3e+02 Score=33.55 Aligned_cols=25 Identities=44% Similarity=0.651 Sum_probs=22.8
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
||=+++||||+.+|.+.-+|||+.-
T Consensus 120 ~dlkp~NIli~~~~~~kL~DfG~~~ 144 (320)
T cd05590 120 RDLKLDNVLLDHEGHCKLADFGMCK 144 (320)
T ss_pred CCCCHHHeEECCCCcEEEeeCCCCe
Confidence 7888999999999999999999754
No 76
>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt
Probab=50.71 E-value=1.5e+02 Score=33.08 Aligned_cols=25 Identities=44% Similarity=0.797 Sum_probs=22.9
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=+++||||+.+|++.=+|||+.-
T Consensus 120 rDlkp~Nili~~~~~~kl~DfG~a~ 144 (325)
T cd05602 120 RDLKPENILLDSQGHIVLTDFGLCK 144 (325)
T ss_pred cCCCHHHeEECCCCCEEEccCCCCc
Confidence 7999999999999999999999763
No 77
>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=50.30 E-value=1.5e+02 Score=32.99 Aligned_cols=25 Identities=40% Similarity=0.785 Sum_probs=22.8
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=.++||||+.+|++.=+|||+.-
T Consensus 120 ~Dlkp~NIll~~~~~~kl~Dfg~~~ 144 (321)
T cd05603 120 RDLKPENILLDSQGHVVLTDFGLCK 144 (321)
T ss_pred ccCCHHHeEECCCCCEEEccCCCCc
Confidence 7888999999999999999999754
No 78
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=50.12 E-value=9.3 Score=42.44 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.8
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
||=|++|||++.+| +.=||||..-
T Consensus 159 ~Dikp~Nili~~~g-i~liDfg~~~ 182 (232)
T PRK10359 159 GDPHKGNFIVSKNG-LRIIDLSGKR 182 (232)
T ss_pred CCCChHHEEEeCCC-EEEEECCCcc
Confidence 79999999999999 9999998663
No 79
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=48.43 E-value=2e+02 Score=32.18 Aligned_cols=25 Identities=40% Similarity=0.785 Sum_probs=22.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=+++||||+.+|++.=+|||+.-
T Consensus 120 ~Dlkp~NIll~~~~~~kL~DfG~~~ 144 (325)
T cd05604 120 RDLKPENILLDSQGHVVLTDFGLCK 144 (325)
T ss_pred cCCCHHHeEECCCCCEEEeecCCcc
Confidence 6888999999999999999999864
No 80
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=46.82 E-value=2.5e+02 Score=30.71 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.5
Q ss_pred CCCCCCcceecCCCCEEEeeccccccC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
+|-.++||||+.+|.+.=+|||..-..
T Consensus 161 ~dlkp~Nili~~~~~~kl~D~g~~~~~ 187 (304)
T cd05101 161 RDLAARNVLVTENNVMKIADFGLARDV 187 (304)
T ss_pred cccccceEEEcCCCcEEECCCccceec
Confidence 688899999999999999999987543
No 81
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=46.58 E-value=11 Score=39.89 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.5
Q ss_pred cc--CCCCCCcceecCCCCEEEeecccccc
Q 045995 977 QV--KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 977 GI--GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
|| ||=|++||||+ +|++.=||||..-.
T Consensus 138 giiHrDlkP~NIli~-~~~v~LiDFG~a~~ 166 (190)
T cd05147 138 RLVHADLSEYNLLYH-DGKLYIIDVSQSVE 166 (190)
T ss_pred CcccCCCCHHHEEEE-CCcEEEEEcccccc
Confidence 55 89999999998 69999999997653
No 82
>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional
Probab=45.39 E-value=44 Score=37.78 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=45.8
Q ss_pred eeeeccCchhHHHHHHhCCCCCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhcc--CCCCCCcceecC----
Q 045995 917 LIETIYDTASLHSIKSRYPNITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQV--KDRHNGNLLLDE---- 990 (1129)
Q Consensus 917 LIE~V~ns~SL~~I~k~~~~i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGI--GDRHndNILLd~---- 990 (1129)
+.|.|+++.++.++...+.. .+.. ...+...++.+|....--+-.|| ||=+..||||+.
T Consensus 113 Vte~l~~~~sL~~~~~~~~~------------~~~~---~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~ 177 (268)
T PRK15123 113 ITEDLAPTISLEDYCADWAT------------NPPD---PRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPG 177 (268)
T ss_pred EEeeCCCCccHHHHHHhhcc------------cCCC---HHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccC
Confidence 66888888788777643211 0111 11234455555555555555555 899999999985
Q ss_pred ---CCCEEEeecccc
Q 045995 991 ---EGHIIHIDFGFM 1002 (1129)
Q Consensus 991 ---tG~lfHIDFGfI 1002 (1129)
++.++=|||+-+
T Consensus 178 ~~~~~~~~LIDl~r~ 192 (268)
T PRK15123 178 REEDLKLSVIDLHRA 192 (268)
T ss_pred CCCCceEEEEECCcc
Confidence 578999999865
No 83
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=44.83 E-value=1.5e+02 Score=33.77 Aligned_cols=26 Identities=42% Similarity=0.704 Sum_probs=23.5
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=+++||||+.+|++.-+|||++-.
T Consensus 125 rDLkp~NIli~~~~~vkL~DfG~~~~ 150 (360)
T cd05627 125 RDIKPDNLLLDAKGHVKLSDFGLCTG 150 (360)
T ss_pred cCCCHHHEEECCCCCEEEeeccCCcc
Confidence 78889999999999999999998653
No 84
>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr
Probab=44.32 E-value=2.4e+02 Score=31.40 Aligned_cols=25 Identities=40% Similarity=0.785 Sum_probs=22.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=+++||||+.+|.+.=+|||++.
T Consensus 120 ~dikp~NIll~~~~~~kl~Dfg~~~ 144 (323)
T cd05575 120 RDLKPENILLDSQGHVVLTDFGLCK 144 (323)
T ss_pred CCCCHHHeEECCCCcEEEeccCCCc
Confidence 6888899999999999999999764
No 85
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=44.12 E-value=1.9e+02 Score=30.73 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=23.1
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|-+.+||||+.+|.+.=+|||..-
T Consensus 126 ~dl~~~Nill~~~~~~~l~dfg~~~ 150 (260)
T cd05069 126 RDLRAANILVGDNLVCKIADFGLAR 150 (260)
T ss_pred cccCcceEEEcCCCeEEECCCccce
Confidence 7999999999999999999999874
No 86
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=42.84 E-value=1.6e+02 Score=32.93 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcCCcEEEEccCCCc--eeeeccCchhHHHHHHhCCCCCcHHHHHHHHhCCCChH--HHH
Q 045995 882 LAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTA--LIETIYDTASLHSIKSRYPNITSLRDFFVAKYQENSPS--FKL 957 (1129)
Q Consensus 882 L~mQLi~lmn~Ilkke~LdL~L~pY~VLpts~~~G--LIE~V~ns~SL~~I~k~~~~i~sL~~~f~~~f~~~s~~--f~~ 957 (1129)
++.|=.++++++.. +-|....|+.+....| .+|||+++.++.+ |++....+.... ...
T Consensus 56 Rt~~Ear~l~k~~~-----~GI~~P~l~~~D~~~~~i~ME~~~g~~~vk~-------------~i~~~~~~~~~d~~~~~ 117 (229)
T KOG3087|consen 56 RTKQEARLLAKCRA-----LGIPAPRLIFIDTYGGQIYMEFIDGASTVKD-------------FILSTMEDESEDEGLAE 117 (229)
T ss_pred HHHHHHHHHHHHHH-----hCCCCceEEEEecCCCeEEEEeccchhHHHH-------------HHHHHccCcccchhHHH
Confidence 45555555555543 2455567777544444 7899988755543 333332221110 011
Q ss_pred HHHHHHHhhhhHHHHHhhhccCCCCCCcceecC-CCCE--EEeeccccccC
Q 045995 958 AQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDE-EGHI--IHIDFGFMLSN 1005 (1129)
Q Consensus 958 ar~nFirSlAgYSVvtYILGIGDRHndNILLd~-tG~l--fHIDFGfILg~ 1005 (1129)
..+.+-.-+|-+=.-.|| =||=...||||.. .+.+ +-||||.-..+
T Consensus 118 ~~~~iG~~igklH~ndii--HGDLTTSNill~~~~~~~~~~lIdfgls~~s 166 (229)
T KOG3087|consen 118 LARRIGELIGKLHDNDII--HGDLTTSNILLRSDGNQITPILIDFGLSSVS 166 (229)
T ss_pred HHHHHHHHHHHhhhCCee--cccccccceEEecCCCcCceEEEeecchhcc
Confidence 112222222222222222 2799999999999 5666 88999987766
No 87
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=42.75 E-value=2.5e+02 Score=32.29 Aligned_cols=24 Identities=42% Similarity=0.753 Sum_probs=22.2
Q ss_pred CCCCCCcceecCCCCEEEeecccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFM 1002 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfI 1002 (1129)
+|=.++||||+.+|++.=+|||+.
T Consensus 125 rDlKp~Nili~~~~~~kL~DFGl~ 148 (381)
T cd05626 125 RDIKPDNILIDLDGHIKLTDFGLC 148 (381)
T ss_pred cCCcHHHEEECCCCCEEEeeCcCC
Confidence 688899999999999999999975
No 88
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=42.56 E-value=2.6e+02 Score=29.69 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.7
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=+.+||||+..|.+.-+|||....
T Consensus 126 ~dl~p~ni~i~~~~~~~l~d~~~~~~ 151 (260)
T cd05073 126 RDLRAANILVSASLVCKIADFGLARV 151 (260)
T ss_pred cccCcceEEEcCCCcEEECCCcceee
Confidence 67778999999999999999998754
No 89
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=42.00 E-value=22 Score=37.03 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=25.2
Q ss_pred CCCCCCcceecCCCCEEEeeccccccCCC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSNSP 1007 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~~p 1007 (1129)
||=|++||||+.+|.+.=||||.+.....
T Consensus 149 ~Dl~p~Nill~~~~~~~liDfg~~~~~~~ 177 (198)
T cd05144 149 GDLSEFNILVDDDEKIYIIDWPQMVSTDH 177 (198)
T ss_pred CCCCcccEEEcCCCcEEEEECCccccCCC
Confidence 58899999999999999999998866543
No 90
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=41.47 E-value=2.7e+02 Score=31.79 Aligned_cols=24 Identities=42% Similarity=0.797 Sum_probs=22.6
Q ss_pred CCCCCCcceecCCCCEEEeecccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFM 1002 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfI 1002 (1129)
+|=.++||||+.+|++.-+|||++
T Consensus 125 rDlkp~Nill~~~~~ikL~DFG~a 148 (376)
T cd05598 125 RDIKPDNILIDRDGHIKLTDFGLC 148 (376)
T ss_pred CCCCHHHEEECCCCCEEEEeCCCC
Confidence 788999999999999999999985
No 91
>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2.7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....
Probab=41.42 E-value=2.9e+02 Score=29.18 Aligned_cols=29 Identities=28% Similarity=0.627 Sum_probs=20.4
Q ss_pred hhhccCCCCCCccee-cCCCCEEEeecccc
Q 045995 974 YLLQVKDRHNGNLLL-DEEGHIIHIDFGFM 1002 (1129)
Q Consensus 974 YILGIGDRHndNILL-d~tG~lfHIDFGfI 1002 (1129)
.++-=+|=|.+|||+ +.+|++.=|||-|+
T Consensus 143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya 172 (211)
T PF01633_consen 143 LVFCHNDLNPGNILINNKDGEVKLIDFEYA 172 (211)
T ss_dssp EEEE-S--SGGGEEETSSSSCEEE--GTT-
T ss_pred ceEeeccCccccEEeccCCCeEEEecHHHH
Confidence 577789999999999 66999999999775
No 92
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=41.24 E-value=76 Score=38.54 Aligned_cols=97 Identities=25% Similarity=0.450 Sum_probs=62.4
Q ss_pred HHHHHcCCCCCcCCcEEEEccCCCc-eeeeccCchhHHHHHHhCCCCCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHH
Q 045995 892 DIFQEAGLPLWLRPYEVLVTSSYTA-LIETIYDTASLHSIKSRYPNITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYS 970 (1129)
Q Consensus 892 ~Ilkke~LdL~L~pY~VLpts~~~G-LIE~V~ns~SL~~I~k~~~~i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYS 970 (1129)
.||..-..+..-+.|..+-+..-.+ +||+.++. -|+.+.++.++- . |.+....|. +.- ..+
T Consensus 129 eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGG-dL~~LrqkQp~~-~--------fse~~aRFY------aAE--vl~ 190 (459)
T KOG0610|consen 129 EILSLLDHPFLPTLYASFETDKYSCLVMEYCPGG-DLHSLRQKQPGK-R--------FSESAARFY------AAE--VLL 190 (459)
T ss_pred HHHHhcCCCccchhhheeeccceeEEEEecCCCc-cHHHHHhhCCCC-c--------cchhhHHHH------HHH--HHH
Confidence 3444446677888899999988766 57898876 677776665431 1 111111121 111 122
Q ss_pred HHHh--hhcc--CCCCCCcceecCCCCEEEeeccccccCC
Q 045995 971 LVCY--LLQV--KDRHNGNLLLDEEGHIIHIDFGFMLSNS 1006 (1129)
Q Consensus 971 VvtY--ILGI--GDRHndNILLd~tG~lfHIDFGfILg~~ 1006 (1129)
.+=| .||| .|=-++||||..+|||+-.||-..+-..
T Consensus 191 ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~ 230 (459)
T KOG0610|consen 191 ALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCP 230 (459)
T ss_pred HHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCC
Confidence 2333 4565 4778999999999999999998887763
No 93
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=40.73 E-value=1.4e+02 Score=33.45 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=69.1
Q ss_pred hhhHHHHHhhhccCCCCCCcceecC--CCCEEEeeccccccCCCCCCCCCCCCccCcHHHHHHHcCCCCCCCchhHHHHH
Q 045995 966 MAGYSLVCYLLQVKDRHNGNLLLDE--EGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMDSDAEGLPSEFFDYFK 1043 (1129)
Q Consensus 966 lAgYSVvtYILGIGDRHndNILLd~--tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemvevMG~g~eG~~Se~f~~Fr 1043 (1129)
+.-++|+=|++|=+|||--|+.=.. .|-++|+|=|--||+.......=.+| | ..--.|+
T Consensus 92 liDm~IFDFLigN~DRhhye~f~~fgn~~~l~~LDNgrgFG~~~~de~sIlaP----------L---------~QcC~iR 152 (221)
T PF06702_consen 92 LIDMAIFDFLIGNMDRHHYETFNKFGNEGFLLHLDNGRGFGRPSHDELSILAP----------L---------YQCCRIR 152 (221)
T ss_pred HHHHHHHHHHhcCCcchhhhhhhccCCCceEEEEeCCcccCCCCCCccchhcc----------H---------HHhhhcc
Confidence 3466888999999999999854222 57799999999998755432100122 1 1123366
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH-HhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 045995 1044 VLCIQGFLTCRKHAERIILLVE-MLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDA 1112 (1129)
Q Consensus 1044 ~lc~~af~aLRk~a~lIi~Lle-lM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~s 1112 (1129)
+.....+..|.+....+-.++. .|..+++.-+-. +..+..|..|+. .|...|+.++..
T Consensus 153 rST~~rL~~l~~~~~~Ls~~m~~s~~~D~l~PvL~-e~Hl~AldrRL~----------~Vl~~V~~Ci~k 211 (221)
T PF06702_consen 153 RSTWERLQLLSKGGYRLSDLMRESLSRDPLAPVLT-EPHLEALDRRLD----------KVLRTVEKCIEK 211 (221)
T ss_pred ccHHHHHHHhccCCCcHHHHHHHHhccCccCccCc-HHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 6666666666655555555554 344444432221 256777777763 445555555443
No 94
>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin
Probab=39.92 E-value=3.7e+02 Score=29.59 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=25.7
Q ss_pred cCCCCCCcceecCCCCEEEeeccccccCC
Q 045995 978 VKDRHNGNLLLDEEGHIIHIDFGFMLSNS 1006 (1129)
Q Consensus 978 IGDRHndNILLd~tG~lfHIDFGfILg~~ 1006 (1129)
-||=+++||||+.+|++.=+|||+.....
T Consensus 126 H~dlkp~Nili~~~~~~~l~dfg~~~~~~ 154 (316)
T cd05574 126 YRDLKPENILLHESGHIMLSDFDLSKQSD 154 (316)
T ss_pred ccCCChHHeEEcCCCCEEEeecchhhccc
Confidence 48999999999999999999999877553
No 95
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=39.84 E-value=50 Score=42.02 Aligned_cols=118 Identities=23% Similarity=0.286 Sum_probs=66.4
Q ss_pred ceEEEEE-ecCCchhhHHHHHHHHHHHHHHHHHc-CCCCCcCCcEEEEccCCC-ceeeeccCchhHHHHHHhCCCCCcHH
Q 045995 865 DLRSVIV-KSGDDCRQEHLAVQLISHFYDIFQEA-GLPLWLRPYEVLVTSSYT-ALIETIYDTASLHSIKSRYPNITSLR 941 (1129)
Q Consensus 865 ~~~svI~-K~GDDLRQDqL~mQLi~lmn~Ilkke-~LdL~L~pY~VLpts~~~-GLIE~V~ns~SL~~I~k~~~~i~sL~ 941 (1129)
..|.+=+ |. |+.-||--+.++... .+|+.-. +.+.-...|.+.-|.... =++|+|.+.. +..|..
T Consensus 394 e~yAIK~LKK-~~Il~~d~Ve~~~~E-krI~~la~~HPFL~~L~~~fQT~~~l~fvmey~~Ggd-m~~~~~--------- 461 (694)
T KOG0694|consen 394 EYYAIKVLKK-GDILQRDEVESLMCE-KRIFELANRHPFLVNLFSCFQTKEHLFFVMEYVAGGD-LMHHIH--------- 461 (694)
T ss_pred cEEEEEEeec-cceeccccHHHHHHH-HHHHHHhccCCeEeecccccccCCeEEEEEEecCCCc-EEEEEe---------
Confidence 3444433 44 444444444444333 2344333 456666778888777654 3568887664 332222
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhcc----CCCCCCcceecCCCCEEEeeccccccC
Q 045995 942 DFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQV----KDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 942 ~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGI----GDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
...|.++|-+|..-+ ..+.+.|+=.- .|=-+||||||.+||+==+|||.+=..
T Consensus 462 ----------~~~F~e~rarfyaAe-v~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~ 518 (694)
T KOG0694|consen 462 ----------TDVFSEPRARFYAAE-VVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEG 518 (694)
T ss_pred ----------cccccHHHHHHHHHH-HHHHHHHHHhcCceeeecchhheEEcccCcEEeccccccccc
Confidence 112334454544322 23334444322 477899999999999999999987443
No 96
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=39.13 E-value=3.2e+02 Score=29.09 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=23.6
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=+++||||+.+|.+.-+|||....
T Consensus 124 ~dlkp~Nill~~~~~~kl~dfg~~~~ 149 (269)
T cd05042 124 SDLALRNCQLTADLSVKIGDYGLALE 149 (269)
T ss_pred ccccHhheEecCCCcEEEeccccccc
Confidence 78899999999999999999998754
No 97
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=38.58 E-value=3.1e+02 Score=30.18 Aligned_cols=46 Identities=30% Similarity=0.489 Sum_probs=32.1
Q ss_pred CCCCCCcceecCCCCEEEeeccccccCCCCCCCCCCCCccCcHHHHH
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLE 1025 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemve 1025 (1129)
||-+++||+++.+|.+.=+|||+..-..+..... ..+.-+.+|++.
T Consensus 139 ~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~-~~~~y~aPE~~~ 184 (307)
T cd06607 139 RDIKAGNILLTEPGTVKLADFGSASLVSPANSFV-GTPYWMAPEVIL 184 (307)
T ss_pred cCCCcccEEECCCCCEEEeecCcceecCCCCCcc-CCccccCceeee
Confidence 7999999999999999999999775443332211 233445666654
No 98
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=38.55 E-value=21 Score=39.55 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=29.5
Q ss_pred HHhhhccCCCCCCcceecCC----CCEEEeeccccccCCC
Q 045995 972 VCYLLQVKDRHNGNLLLDEE----GHIIHIDFGFMLSNSP 1007 (1129)
Q Consensus 972 vtYILGIGDRHndNILLd~t----G~lfHIDFGfILg~~p 1007 (1129)
..++|==||=|.+|||++.+ |.+.-|||.|+=-..|
T Consensus 177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~p 216 (302)
T cd05156 177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNYR 216 (302)
T ss_pred CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCCc
Confidence 45677779999999999985 9999999988754444
No 99
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=37.87 E-value=3.6e+02 Score=30.15 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.2
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=.++||||+.+|.+.=+|||+.-.
T Consensus 158 ~dlkp~Nill~~~~~~kL~Dfg~~~~ 183 (334)
T cd05100 158 RDLAARNVLVTEDNVMKIADFGLARD 183 (334)
T ss_pred cccccceEEEcCCCcEEECCccccee
Confidence 56668999999999999999997643
No 100
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=36.55 E-value=60 Score=36.93 Aligned_cols=26 Identities=46% Similarity=0.724 Sum_probs=23.4
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=+++||||+.+|++.-+|||+.-.
T Consensus 155 rDLkp~NILl~~~~~ikL~DFG~a~~ 180 (340)
T PTZ00426 155 RDLKPENLLLDKDGFIKMTDFGFAKV 180 (340)
T ss_pred cCCCHHHEEECCCCCEEEecCCCCee
Confidence 78889999999999999999998754
No 101
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=36.04 E-value=3.4e+02 Score=30.31 Aligned_cols=25 Identities=44% Similarity=0.693 Sum_probs=22.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=+++||||+.+|++.-+|||+.-
T Consensus 125 ~dlkp~Nill~~~~~~kL~Dfg~~~ 149 (324)
T cd05587 125 RDLKLDNVMLDAEGHIKIADFGMCK 149 (324)
T ss_pred cCCCHHHeEEcCCCCEEEeecCcce
Confidence 7889999999999999999999753
No 102
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=35.67 E-value=24 Score=38.48 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.7
Q ss_pred cCCCCCCcceecCCCCEEEeecccc
Q 045995 978 VKDRHNGNLLLDEEGHIIHIDFGFM 1002 (1129)
Q Consensus 978 IGDRHndNILLd~tG~lfHIDFGfI 1002 (1129)
=||=|.+|||++.+| +.=|||++.
T Consensus 157 HgD~~~~Nii~~~~~-~~iIDwe~a 180 (226)
T TIGR02172 157 HGDFQIGNLITSGKG-TYWIDLGDF 180 (226)
T ss_pred ecCCCCCcEEEcCCC-cEEEechhc
Confidence 689999999999988 889999875
No 103
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=35.30 E-value=24 Score=35.81 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.0
Q ss_pred cCCCCCCcceecCCCCEEEeecccccc
Q 045995 978 VKDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 978 IGDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
=||=|++||||+ +|.+.=||||.+-.
T Consensus 138 H~Dl~p~Nili~-~~~~~liDfg~a~~ 163 (187)
T cd05119 138 HGDLSEYNILVD-DGKVYIIDVPQAVE 163 (187)
T ss_pred cCCCChhhEEEE-CCcEEEEECccccc
Confidence 478999999999 99999999998743
No 104
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=35.15 E-value=2.3e+02 Score=30.05 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.2
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=+++||||+.+|.+.=+|||+.-.
T Consensus 126 ~di~p~Nili~~~~~~~l~dfg~~~~ 151 (260)
T cd05070 126 RDLRSANILVGDGLVCKIADFGLARL 151 (260)
T ss_pred CCCccceEEEeCCceEEeCCceeeee
Confidence 78899999999999999999998753
No 105
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=35.02 E-value=21 Score=36.71 Aligned_cols=32 Identities=38% Similarity=0.415 Sum_probs=21.8
Q ss_pred HHhhhccCCCCCCcceecC-CCCEEEeeccccc
Q 045995 972 VCYLLQVKDRHNGNLLLDE-EGHIIHIDFGFML 1003 (1129)
Q Consensus 972 vtYILGIGDRHndNILLd~-tG~lfHIDFGfIL 1003 (1129)
..+.+-=||=|.+|||++. +|+|--|||+++-
T Consensus 164 ~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~ 196 (239)
T PF01636_consen 164 LPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAG 196 (239)
T ss_dssp SCEEEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred CCcEEEEeccccccceeeeccceeEEEecccce
Confidence 4566777999999999994 7777699998764
No 106
>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways
Probab=34.73 E-value=3.9e+02 Score=29.95 Aligned_cols=26 Identities=38% Similarity=0.655 Sum_probs=23.2
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=.++||||+.+|++.-+|||....
T Consensus 120 rDlkp~Nili~~~~~~kl~Dfg~~~~ 145 (327)
T cd05617 120 RDLKLDNVLLDADGHIKLTDYGMCKE 145 (327)
T ss_pred cCCCHHHEEEeCCCCEEEecccccee
Confidence 68889999999999999999998753
No 107
>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and
Probab=34.22 E-value=3.4e+02 Score=30.26 Aligned_cols=26 Identities=42% Similarity=0.672 Sum_probs=23.3
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=.++||||+.+|++.-+|||+.-.
T Consensus 125 rDlkp~Nill~~~~~~kL~DfG~~~~ 150 (323)
T cd05616 125 RDLKLDNVMLDSEGHIKIADFGMCKE 150 (323)
T ss_pred cCCCHHHeEECCCCcEEEccCCCcee
Confidence 68889999999999999999997654
No 108
>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of
Probab=33.90 E-value=4.5e+02 Score=29.34 Aligned_cols=25 Identities=44% Similarity=0.706 Sum_probs=22.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=.++||||+.+|++.=+|||+.-
T Consensus 120 rDlkp~Nili~~~~~~kl~Dfg~a~ 144 (330)
T cd05586 120 RDLKPENILLDATGHIALCDFGLSK 144 (330)
T ss_pred ccCCHHHeEECCCCCEEEecCCcCc
Confidence 7888999999999999999999753
No 109
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=33.86 E-value=64 Score=33.99 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=23.8
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
||-+++||+|+.+|++.-+|||+..-
T Consensus 137 ~~l~p~ni~~~~~~~~~l~d~~~~~~ 162 (275)
T cd06608 137 RDIKGQNILLTKNAEVKLVDFGVSAQ 162 (275)
T ss_pred CCCCHHHEEEccCCeEEECCCcccee
Confidence 89999999999999999999998653
No 110
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=33.52 E-value=3.1e+02 Score=30.51 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=23.1
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
||=+++||||+.+|++.=+|||..-
T Consensus 126 ~Dlkp~NIll~~~~~~kL~Dfg~a~ 150 (330)
T cd05601 126 RDIKPENVLIDRTGHIKLADFGSAA 150 (330)
T ss_pred ccCchHheEECCCCCEEeccCCCCe
Confidence 7889999999999999999999864
No 111
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=33.45 E-value=30 Score=38.00 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.0
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=|++||||+.+|++.=||||.+--
T Consensus 166 rDlkp~NILv~~~~~v~LIDfg~~~~ 191 (239)
T PRK01723 166 ADLNAHNILLDPDGKFWLIDFDRGEL 191 (239)
T ss_pred CCCCchhEEEcCCCCEEEEECCCccc
Confidence 69999999999999999999986544
No 112
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=33.38 E-value=3.2e+02 Score=29.99 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|-+++||||+.+|++.=+|||..-
T Consensus 164 ~dlkp~Nill~~~~~~kL~dfg~a~ 188 (307)
T cd05098 164 RDLAARNVLVTEDNVMKIADFGLAR 188 (307)
T ss_pred ccccHHheEEcCCCcEEECCCcccc
Confidence 7888999999999999999999764
No 113
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=33.17 E-value=21 Score=42.18 Aligned_cols=34 Identities=41% Similarity=0.617 Sum_probs=27.2
Q ss_pred HHHHhhhcc----CCCCCCcceecCCCCEEEeeccccc
Q 045995 970 SLVCYLLQV----KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 970 SVvtYILGI----GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+.+.|+=.. +|=-++|||||.+|||.-.|||.+=
T Consensus 136 lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k 173 (357)
T KOG0598|consen 136 LALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCK 173 (357)
T ss_pred HHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccch
Confidence 445555433 4788999999999999999999875
No 114
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=32.60 E-value=3.6e+02 Score=28.42 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.5
Q ss_pred CCCCCCcceecCCCCEEEeecccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFM 1002 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfI 1002 (1129)
||=+++||||+.+|++.=+|||..
T Consensus 128 ~dl~p~nilv~~~~~~~l~dfg~~ 151 (263)
T cd06625 128 RDIKGANILRDSAGNVKLGDFGAS 151 (263)
T ss_pred CCCCHHHEEEcCCCCEEEeecccc
Confidence 799999999999999999999975
No 115
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=32.03 E-value=29 Score=38.30 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=23.4
Q ss_pred hhccCCCCCCcceecCCCCEEEeeccccc
Q 045995 975 LLQVKDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 975 ILGIGDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
.+==||=|.+|||++.++-+.-|||+++-
T Consensus 176 ~l~HgD~~~~Nil~~~~~~~~iIDfe~a~ 204 (296)
T cd05153 176 GVIHADLFRDNVLFDGDELSGVIDFYFAC 204 (296)
T ss_pred cCCccCcCcccEEEeCCceEEEeehhhhc
Confidence 34459999999999987766799997653
No 116
>PRK12274 serine/threonine protein kinase; Provisional
Probab=31.96 E-value=33 Score=38.04 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=25.3
Q ss_pred hhhcc--CCC-CCCcceecCCCCEEEeecccccc
Q 045995 974 YLLQV--KDR-HNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 974 YILGI--GDR-HndNILLd~tG~lfHIDFGfILg 1004 (1129)
+=.|| +|= ..+|||++.+|++.=||||...-
T Consensus 108 H~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~ 141 (218)
T PRK12274 108 HRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVR 141 (218)
T ss_pred HHCcCccCCCCCcceEEEcCCCCEEEEECCCcee
Confidence 34466 777 47899999999999999998863
No 117
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=31.59 E-value=5.1e+02 Score=29.73 Aligned_cols=25 Identities=40% Similarity=0.748 Sum_probs=22.8
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=.++||||+.+|++.=+|||.+-
T Consensus 125 rDlKp~NILl~~~g~~kL~DFGla~ 149 (382)
T cd05625 125 RDIKPDNILIDRDGHIKLTDFGLCT 149 (382)
T ss_pred CCCCHHHEEECCCCCEEEeECCCCc
Confidence 7889999999999999999999853
No 118
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=30.52 E-value=1.3e+02 Score=40.64 Aligned_cols=56 Identities=30% Similarity=0.455 Sum_probs=43.6
Q ss_pred HHhhhccCCCCCCcceecCCCCEEEeeccccccCCCCCCC----CCCCCccCcHHHHHHHcC
Q 045995 972 VCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVN----FESAPFKLTRELLEVMDS 1029 (1129)
Q Consensus 972 vtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~~~~----~E~vPFRLTkemvevMG~ 1029 (1129)
+|||= .|=-+||||||..|||=-.|||-|+--..-|.+ .--.|==++||++..||.
T Consensus 194 mgyVH--RDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~ 253 (1317)
T KOG0612|consen 194 MGYVH--RDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGD 253 (1317)
T ss_pred cccee--ccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcC
Confidence 34543 477799999999999999999999987654422 233577799999999993
No 119
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=30.44 E-value=6.1e+02 Score=25.99 Aligned_cols=51 Identities=24% Similarity=0.413 Sum_probs=37.0
Q ss_pred hccCCCCCCcceecCCCCEEEeeccccccCCCCC--CCCCCCCccCcHHHHHH
Q 045995 976 LQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGG--VNFESAPFKLTRELLEV 1026 (1129)
Q Consensus 976 LGIGDRHndNILLd~tG~lfHIDFGfILg~~p~~--~~~E~vPFRLTkemvev 1026 (1129)
+--||-+++||+|+.+|.+.=+|||++....+.. ..+...+.-+.+|++..
T Consensus 119 i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~ 171 (253)
T cd05122 119 IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVING 171 (253)
T ss_pred EecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHHHHcC
Confidence 4568999999999999999999999887665542 22233444567777653
No 120
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=30.03 E-value=1e+02 Score=33.16 Aligned_cols=27 Identities=33% Similarity=0.560 Sum_probs=23.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccccC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
+|-+++||||+.+|.+.-+|||+....
T Consensus 148 ~dlkp~nili~~~~~~kl~dfg~~~~~ 174 (286)
T cd06638 148 RDVKGNNILLTTEGGVKLVDFGVSAQL 174 (286)
T ss_pred cCCCHHhEEECCCCCEEEccCCceeec
Confidence 788899999999999999999987543
No 121
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=29.99 E-value=5.1e+02 Score=27.48 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCCCCCcceecCCCCEEEeeccccccC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
||=+++||||+.+|.+.=+|||.....
T Consensus 127 ~dl~p~Nil~~~~~~~~l~dfg~~~~~ 153 (261)
T cd05068 127 RDLAARNVLVGENNICKVADFGLARVI 153 (261)
T ss_pred ccCCcceEEEcCCCCEEECCcceEEEc
Confidence 788999999999999999999976543
No 122
>smart00090 RIO RIO-like kinase.
Probab=29.92 E-value=68 Score=35.28 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.3
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
||=|++||||+ +|++.=||||.+..
T Consensus 173 ~Dikp~NIli~-~~~i~LiDFg~a~~ 197 (237)
T smart00090 173 GDLSEYNILVH-DGKVVIIDVSQSVE 197 (237)
T ss_pred CCCChhhEEEE-CCCEEEEEChhhhc
Confidence 69999999999 89999999997654
No 123
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=29.77 E-value=37 Score=34.95 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=23.9
Q ss_pred HhhhccCCCCCCcceecC--CCCEEEeeccccc
Q 045995 973 CYLLQVKDRHNGNLLLDE--EGHIIHIDFGFML 1003 (1129)
Q Consensus 973 tYILGIGDRHndNILLd~--tG~lfHIDFGfIL 1003 (1129)
-+.+==||=|.+|||++. +|.+.=|||+++-
T Consensus 173 ~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~ 205 (223)
T cd05154 173 RPGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT 205 (223)
T ss_pred CcEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence 345556999999999999 5556679998654
No 124
>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus
Probab=29.67 E-value=4.1e+02 Score=30.33 Aligned_cols=25 Identities=44% Similarity=0.729 Sum_probs=22.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=.++||||+.+|++.=+|||.+-
T Consensus 125 rDlKp~NILi~~~~~vkL~DFGla~ 149 (363)
T cd05628 125 RDIKPDNLLLDSKGHVKLSDFGLCT 149 (363)
T ss_pred cCCCHHHeEECCCCCEEEeeccCcc
Confidence 6888999999999999999999863
No 125
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=29.65 E-value=5.9e+02 Score=28.39 Aligned_cols=25 Identities=44% Similarity=0.659 Sum_probs=22.2
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=.++||||+.+|++.-+|||..-
T Consensus 120 rDikp~Nill~~~~~~kL~Dfg~~~ 144 (321)
T cd05591 120 RDLKLDNILLDAEGHCKLADFGMCK 144 (321)
T ss_pred cCCCHHHeEECCCCCEEEeecccce
Confidence 6777889999999999999999764
No 126
>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP. PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].
Probab=29.32 E-value=1.3e+02 Score=32.71 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=55.1
Q ss_pred cCCcEEEEccCCCcee-eeccCchhHHHHHHhCCC-CCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCC
Q 045995 903 LRPYEVLVTSSYTALI-ETIYDTASLHSIKSRYPN-ITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKD 980 (1129)
Q Consensus 903 L~pY~VLpts~~~GLI-E~V~ns~SL~~I~k~~~~-i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGD 980 (1129)
-+.|.++.|+...|+| |.|.+.. ++ ..+|.+|+.. +.-...+.++.+.|.+-+....|++. |
T Consensus 80 ~r~~G~veT~~G~Glv~e~I~d~d---------G~~s~TL~~~l~~--~~~~~~~~~~L~~f~~~l~~~~Iv~~-----d 143 (199)
T PF10707_consen 80 PRFYGFVETNLGLGLVVELIRDAD---------GNISPTLEDYLKE--GGLTEELRQALDEFKRYLLDHHIVIR-----D 143 (199)
T ss_pred ccEeEEEecCCceEEEEEEEECCC---------CCcCccHHHHHHc--CCccHHHHHHHHHHHHHHHHcCCeec-----C
Confidence 3459999999998865 6776531 11 1356666532 22233566788888888877776654 7
Q ss_pred CCCCcceecC--CC--CEEEeec
Q 045995 981 RHNGNLLLDE--EG--HIIHIDF 999 (1129)
Q Consensus 981 RHndNILLd~--tG--~lfHIDF 999 (1129)
=+..|||+.. +| ++|=||-
T Consensus 144 l~~~NIv~~~~~~~~~~lvlIDG 166 (199)
T PF10707_consen 144 LNPHNIVVQRRDSGEFRLVLIDG 166 (199)
T ss_pred CCcccEEEEecCCCceEEEEEeC
Confidence 8999999998 44 4888885
No 127
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=29.25 E-value=3.1e+02 Score=30.47 Aligned_cols=48 Identities=31% Similarity=0.511 Sum_probs=32.8
Q ss_pred CCCCCCcceecCCCCEEEeeccccccCCCCCCCCCCCCccCcHHHHHHH
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVM 1027 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemvevM 1027 (1129)
||=+++|||++.+|++.=+|||......+.... ...+.=+.+|++..+
T Consensus 149 ~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~y~aPE~~~~~ 196 (317)
T cd06635 149 RDIKAGNILLTEPGQVKLADFGSASIASPANSF-VGTPYWMAPEVILAM 196 (317)
T ss_pred CCCCcccEEECCCCCEEEecCCCccccCCcccc-cCCccccChhhhhcC
Confidence 788999999999999999999987544332211 122334567776443
No 128
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=29.18 E-value=39 Score=31.67 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.9
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
||=|.+|||++..|.+.=||||.+-
T Consensus 113 ~Dl~~~Nil~~~~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDDGKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEECCcEEEEEeccccc
Confidence 8999999999999999999998764
No 129
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=29.08 E-value=4.4e+02 Score=29.45 Aligned_cols=26 Identities=38% Similarity=0.652 Sum_probs=23.4
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
||=+++||||+.+|++.=+|||+.-.
T Consensus 125 ~dlkp~Nil~~~~~~~kL~Dfg~a~~ 150 (333)
T cd05600 125 RDLKPENFLIDASGHIKLTDFGLSKG 150 (333)
T ss_pred cCCCHHHEEECCCCCEEEEeCcCCcc
Confidence 78889999999999999999997754
No 130
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=28.82 E-value=7.7e+02 Score=26.65 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.3
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|-.++||||+.+|.+.-+|||..-
T Consensus 133 ~dlkp~nili~~~~~~kl~Dfg~~~ 157 (279)
T cd05111 133 RNLAARNILLKSDSIVQIADFGVAD 157 (279)
T ss_pred cccCcceEEEcCCCcEEEcCCccce
Confidence 6777899999999999999999773
No 131
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=28.64 E-value=38 Score=38.00 Aligned_cols=29 Identities=28% Similarity=0.219 Sum_probs=23.9
Q ss_pred hhhccCCCCCCcceecCCCCEEEeecccc
Q 045995 974 YLLQVKDRHNGNLLLDEEGHIIHIDFGFM 1002 (1129)
Q Consensus 974 YILGIGDRHndNILLd~tG~lfHIDFGfI 1002 (1129)
+.|==||=|.+||+++.+|.+.-|||+++
T Consensus 187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~ 215 (307)
T TIGR00938 187 RGVIHADLFPDNVLFDGDSVKGVIDFYFA 215 (307)
T ss_pred CccCCCCCCcCcEEEECCceEEEeecccc
Confidence 34445899999999999886689999876
No 132
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=28.43 E-value=6e+02 Score=28.56 Aligned_cols=25 Identities=44% Similarity=0.691 Sum_probs=22.8
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=+++||||+.+|.+.=+|||+.-
T Consensus 120 ~dlkp~Nili~~~~~~kL~Dfg~~~ 144 (329)
T cd05588 120 RDLKLDNVLLDAEGHIKLTDYGMCK 144 (329)
T ss_pred cCCCHHHeEECCCCCEEECcCcccc
Confidence 7888999999999999999999764
No 133
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=28.19 E-value=6.3e+02 Score=28.15 Aligned_cols=25 Identities=44% Similarity=0.773 Sum_probs=22.5
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=.++||||+.+|++.=+|||+.-
T Consensus 129 rDlkp~Nili~~~~~~kl~DfG~~~ 153 (332)
T cd05614 129 RDIKLENILLDSEGHVVLTDFGLSK 153 (332)
T ss_pred cCCCHHHeEECCCCCEEEeeCcCCc
Confidence 6888899999999999999999753
No 134
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=27.47 E-value=7.5e+02 Score=26.07 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=24.1
Q ss_pred CCCCCCcceecCCCCEEEeeccccccC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
||=+++||||+.+|.+.=+|||+....
T Consensus 124 ~dl~p~nili~~~~~~kl~Dfg~~~~~ 150 (254)
T cd05083 124 RDLAARNILVSEDGVAKVSDFGLARVG 150 (254)
T ss_pred cccCcceEEEcCCCcEEECCCccceec
Confidence 899999999999999999999987643
No 135
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=27.41 E-value=6e+02 Score=28.50 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
||=+++||||+.+|++.=+|||..-
T Consensus 128 ~dlkp~Nil~~~~~~~kl~Dfg~~~ 152 (331)
T cd06649 128 RDVKPSNILVNSRGEIKLCDFGVSG 152 (331)
T ss_pred CCCChhhEEEcCCCcEEEccCcccc
Confidence 7889999999999999999999763
No 136
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.92 E-value=1.4e+02 Score=38.20 Aligned_cols=49 Identities=33% Similarity=0.563 Sum_probs=41.0
Q ss_pred CCCCCCcceecCCCCEEEeeccccccCCCCCCCCCCCCccCcHHHHHHHc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMD 1028 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemvevMG 1028 (1129)
.|=-.|||||+..|-|=-.|||-.-=.+|..- |--.||=..++++-+|.
T Consensus 150 RDiKAGNILLse~g~VKLaDFGSAsi~~PAns-FvGTPywMAPEVILAMD 198 (948)
T KOG0577|consen 150 RDIKAGNILLSEPGLVKLADFGSASIMAPANS-FVGTPYWMAPEVILAMD 198 (948)
T ss_pred hhccccceEecCCCeeeeccccchhhcCchhc-ccCCccccchhHheecc
Confidence 35568999999999999999998877777652 22589999999999998
No 137
>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast
Probab=26.79 E-value=4.5e+02 Score=27.31 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=26.3
Q ss_pred cCCCCCCcceecCCCCEEEeeccccccCCC
Q 045995 978 VKDRHNGNLLLDEEGHIIHIDFGFMLSNSP 1007 (1129)
Q Consensus 978 IGDRHndNILLd~tG~lfHIDFGfILg~~p 1007 (1129)
-||=+++||+|+.+|.+.=+|||+......
T Consensus 122 H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~ 151 (254)
T cd06627 122 HRDIKAANILTTKDGVVKLADFGVATKLND 151 (254)
T ss_pred cCCCCHHHEEECCCCCEEEeccccceecCC
Confidence 488999999999999999999998876544
No 138
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=26.41 E-value=6.2e+02 Score=27.70 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=.++||||+.+|.+.=+|||+.-
T Consensus 162 ~dlkp~Nill~~~~~~kl~DfG~~~ 186 (304)
T cd05096 162 RDLATRNCLVGENLTIKIADFGMSR 186 (304)
T ss_pred cCcchhheEEcCCccEEECCCccce
Confidence 7889999999999999999999864
No 139
>PRK10271 thiK thiamine kinase; Provisional
Probab=26.41 E-value=48 Score=35.96 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeeccccccCCCC
Q 045995 954 SFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPG 1008 (1129)
Q Consensus 954 ~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfILg~~p~ 1008 (1129)
.|......|...... +-+..++-=||=|.+||+++.+| +.=|||+|.=..+|.
T Consensus 58 ~wl~~~~~~~~~~~~-~~l~~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gDp~ 110 (188)
T PRK10271 58 FWLRMLKRLRKAGEP-RPLRLAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDIA 110 (188)
T ss_pred HHHHHHHHHHhcccC-CCCCeeeecCCCCCccEEEECCC-EEEEeCCcccCCCHH
Confidence 343444555443333 33356777799999999998877 899999998777764
No 140
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=26.31 E-value=5.4e+02 Score=27.77 Aligned_cols=27 Identities=33% Similarity=0.629 Sum_probs=24.1
Q ss_pred CCCCCCcceecCCCCEEEeeccccccC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
||=++.||+|+.+|++.=+|||+....
T Consensus 140 ~dl~p~ni~i~~~~~~~l~d~~~~~~~ 166 (286)
T cd06614 140 RDIKSDNILLSKDGSVKLADFGFAAQL 166 (286)
T ss_pred CCCChhhEEEcCCCCEEECccchhhhh
Confidence 889999999999999999999986543
No 141
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=26.31 E-value=9.1e+02 Score=26.68 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.9
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=.++||||+.+|++.=+|||..--
T Consensus 133 ~dlkp~Nill~~~~~~kl~DfG~a~~ 158 (316)
T cd05108 133 RDLAARNVLVKTPQHVKITDFGLAKL 158 (316)
T ss_pred cccchhheEecCCCcEEEcccccccc
Confidence 67788999999999999999998753
No 142
>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They
Probab=26.18 E-value=6e+02 Score=26.27 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=25.2
Q ss_pred cCCCCCCcceecCCCCEEEeeccccccCCC
Q 045995 978 VKDRHNGNLLLDEEGHIIHIDFGFMLSNSP 1007 (1129)
Q Consensus 978 IGDRHndNILLd~tG~lfHIDFGfILg~~p 1007 (1129)
-||=+++|||++.+|.+.=+|||+..-...
T Consensus 126 H~dl~~~nil~~~~~~~~l~d~~~~~~~~~ 155 (258)
T cd08215 126 HRDIKPQNIFLTSNGLVKLGDFGISKVLSS 155 (258)
T ss_pred cccCChHHeEEcCCCcEEECCccceeeccc
Confidence 478889999999999999999998765433
No 143
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=25.96 E-value=7.6e+02 Score=27.80 Aligned_cols=25 Identities=44% Similarity=0.694 Sum_probs=22.8
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=.++||||+.+|++.=+|||..-
T Consensus 120 ~Dikp~Nili~~~~~~kL~DfG~~~ 144 (329)
T cd05618 120 RDLKLDNVLLDSEGHIKLTDYGMCK 144 (329)
T ss_pred CCCCHHHEEECCCCCEEEeeCCccc
Confidence 7888999999999999999999764
No 144
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=25.91 E-value=1.1e+02 Score=36.75 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=23.5
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=+++||||+.+|.+.=+|||+.-.
T Consensus 193 rDlkp~NIll~~~~~~kL~DFgla~~ 218 (478)
T PTZ00267 193 RDLKSANIFLMPTGIIKLGDFGFSKQ 218 (478)
T ss_pred CCcCHHhEEECCCCcEEEEeCcCcee
Confidence 78899999999999999999998753
No 145
>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage
Probab=25.81 E-value=1.5e+02 Score=31.88 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=22.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|-..+||||+.+|++.=+|||...
T Consensus 123 ~dikp~nil~~~~~~~~l~Dfg~~~ 147 (268)
T cd05086 123 SDLALRNCFLTSDLTVKVGDYGIGP 147 (268)
T ss_pred cCCccceEEEcCCccEEeccccccc
Confidence 6888999999999999999999764
No 146
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=25.75 E-value=48 Score=35.66 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=22.9
Q ss_pred HhhhccCCCCCCcceecCCCCE-EEeecccc
Q 045995 973 CYLLQVKDRHNGNLLLDEEGHI-IHIDFGFM 1002 (1129)
Q Consensus 973 tYILGIGDRHndNILLd~tG~l-fHIDFGfI 1002 (1129)
.+.|==||=|.+|||++. |++ --|||+++
T Consensus 163 ~~~l~HGD~~~~Nvlv~~-~~i~giIDw~~a 192 (235)
T cd05155 163 PPVWFHGDLAPGNLLVQD-GRLSAVIDFGCL 192 (235)
T ss_pred CceEEeCCCCCCcEEEEC-CCEEEEEeCccc
Confidence 455666999999999985 455 48999975
No 147
>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp
Probab=25.67 E-value=6.3e+02 Score=28.17 Aligned_cols=25 Identities=44% Similarity=0.713 Sum_probs=22.6
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=+++||||+.+|++.-+|||..-
T Consensus 120 ~dlkp~Nill~~~~~~kL~Dfg~a~ 144 (316)
T cd05592 120 RDLKLDNVLLDKDGHIKIADFGMCK 144 (316)
T ss_pred CCCCHHHeEECCCCCEEEccCcCCe
Confidence 6888999999999999999999763
No 148
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.37 E-value=40 Score=40.90 Aligned_cols=27 Identities=44% Similarity=0.694 Sum_probs=24.0
Q ss_pred CCCCCCcceecCCCCEEEeeccccccC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
.|-.+|||||+.+|||=-.|||++=.+
T Consensus 474 RDLKLDNvmLd~eGHiKi~DFGmcKEn 500 (683)
T KOG0696|consen 474 RDLKLDNVMLDSEGHIKIADFGMCKEN 500 (683)
T ss_pred eeccccceEeccCCceEeeeccccccc
Confidence 577899999999999999999987554
No 149
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=25.30 E-value=8.4e+02 Score=27.25 Aligned_cols=25 Identities=44% Similarity=0.723 Sum_probs=22.6
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=.++||||+.+|.+.=+|||++-
T Consensus 119 rDlkp~NIll~~~~~~kl~DfG~a~ 143 (323)
T cd05571 119 RDLKLENLMLDKDGHIKITDFGLCK 143 (323)
T ss_pred CCCCHHHEEECCCCCEEEeeCCCCc
Confidence 7888999999999999999999754
No 150
>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1. Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto
Probab=25.18 E-value=34 Score=36.28 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=25.1
Q ss_pred cCCCCCCcceecCCCCEEEeeccccccCC
Q 045995 978 VKDRHNGNLLLDEEGHIIHIDFGFMLSNS 1006 (1129)
Q Consensus 978 IGDRHndNILLd~tG~lfHIDFGfILg~~ 1006 (1129)
-||=+.+||+|+.+|++..+|||......
T Consensus 125 H~dl~~~ni~i~~~~~~~l~df~~~~~~~ 153 (280)
T cd05581 125 HRDLKPENILLDKDMHIKITDFGTAKVLD 153 (280)
T ss_pred ecCCCHHHeEECCCCCEEecCCccccccC
Confidence 37999999999999999999999876543
No 151
>PRK05231 homoserine kinase; Provisional
Probab=24.98 E-value=48 Score=37.13 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=20.7
Q ss_pred ccCCCCCCcceecCCCCEEEeeccccc
Q 045995 977 QVKDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 977 GIGDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
==||=|.+|||++.++-..-|||+++=
T Consensus 190 iHgD~~~~Nil~~~~~~~~iIDf~~~~ 216 (319)
T PRK05231 190 IHADLFRDNVLFEGDRLSGFIDFYFAC 216 (319)
T ss_pred CCCCCCCCcEEEECCceEEEEeccccc
Confidence 348999999999854334699998763
No 152
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=24.85 E-value=2.4e+02 Score=31.47 Aligned_cols=27 Identities=37% Similarity=0.650 Sum_probs=23.6
Q ss_pred CCCCCCcceecCCCCEEEeeccccccC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
||=.++||||+.+|++.-+|||.+-..
T Consensus 125 ~Dlkp~NIll~~~~~~kL~Dfg~~~~~ 151 (350)
T cd05573 125 RDIKPDNILIDADGHIKLADFGLCKKM 151 (350)
T ss_pred cCCCHHHeEECCCCCEEeecCCCCccC
Confidence 688889999999999999999987543
No 153
>COG1531 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.83 E-value=33 Score=32.51 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=16.7
Q ss_pred CceEEEecC-ccchhhcccc
Q 045995 592 GLYRVVHIP-EDEAVLLNSR 610 (1129)
Q Consensus 592 ~~hRIVRIp-p~EavVLNSa 610 (1129)
|+||||.|- .+..||.+..
T Consensus 57 P~HRIveIr~~~geviw~r~ 76 (77)
T COG1531 57 PYHRIVEIRKKDGEVIWKRG 76 (77)
T ss_pred eeEEEEEEEecCCeEEEecC
Confidence 799999999 9999988764
No 154
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=24.80 E-value=8.5e+02 Score=25.79 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
||=++.||||+.+|.+--+|||..-.
T Consensus 119 ~dlkp~nill~~~~~~kl~Dfg~~~~ 144 (257)
T cd05116 119 RDLAARNVLLVTQHYAKISDFGLSKA 144 (257)
T ss_pred cccchhhEEEcCCCeEEECCCccccc
Confidence 78899999999999999999997643
No 155
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=24.70 E-value=1e+03 Score=26.60 Aligned_cols=25 Identities=44% Similarity=0.723 Sum_probs=23.0
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=.++||||+.+|.+.=+|||++-
T Consensus 120 rDikp~NIll~~~~~~kL~Dfg~~~ 144 (325)
T cd05594 120 RDLKLENLMLDKDGHIKITDFGLCK 144 (325)
T ss_pred cCCCCCeEEECCCCCEEEecCCCCe
Confidence 8899999999999999999999753
No 156
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=24.67 E-value=9.2e+02 Score=26.16 Aligned_cols=47 Identities=32% Similarity=0.429 Sum_probs=31.9
Q ss_pred cCCCCCCcceecCCCCEEEeeccccccCCCCCCCCCCCCccCcHHHH
Q 045995 978 VKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELL 1024 (1129)
Q Consensus 978 IGDRHndNILLd~tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemv 1024 (1129)
-||=++.||||+.+|.+.-+|||+.-.........-..|.-..+|++
T Consensus 124 H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~ 170 (290)
T cd05580 124 YRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEII 170 (290)
T ss_pred cCCCCHHHEEECCCCCEEEeeCCCccccCCCCCCCCCCccccChhhh
Confidence 48999999999999999999999876543321111123334556654
No 157
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=24.66 E-value=9.7e+02 Score=27.67 Aligned_cols=49 Identities=29% Similarity=0.480 Sum_probs=32.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccccCCCCCC----CCCCCCccCcHHHHHHH
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGV----NFESAPFKLTRELLEVM 1027 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~~p~~~----~~E~vPFRLTkemvevM 1027 (1129)
+|=.++||||+.+|++.=+|||+......... ..--.|.=+.+|++...
T Consensus 166 rDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~ 218 (371)
T cd05622 166 RDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQ 218 (371)
T ss_pred CCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhcc
Confidence 68889999999999999999998754332111 01123344667776544
No 158
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=24.64 E-value=5.8e+02 Score=28.10 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
||=.++||||+.+|.+.=+|||+.-.
T Consensus 148 ~dlkp~Nili~~~~~~kl~dfg~~~~ 173 (303)
T cd05088 148 RDLAARNILVGENYVAKIADFGLSRG 173 (303)
T ss_pred cccchheEEecCCCcEEeCccccCcc
Confidence 77888999999999999999998753
No 159
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=24.36 E-value=57 Score=29.94 Aligned_cols=30 Identities=23% Similarity=0.187 Sum_probs=20.5
Q ss_pred HHHHhhhhHHHHHhhhccCCCCCCcceecC
Q 045995 961 NFVESMAGYSLVCYLLQVKDRHNGNLLLDE 990 (1129)
Q Consensus 961 nFirSlAgYSVvtYILGIGDRHndNILLd~ 990 (1129)
.-++.+.-+.++.|++|=+|||..|+=|-.
T Consensus 38 ~~~~~l~~~~~fn~ligN~D~H~kN~s~l~ 67 (79)
T PF07804_consen 38 ADVRELFRRLVFNYLIGNTDRHLKNFSFLY 67 (79)
T ss_dssp HHHHHHHHHHHHHHHCTBS---CCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCcCCcCCEEEEE
Confidence 344556667899999999999999986533
No 160
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=24.03 E-value=55 Score=36.72 Aligned_cols=109 Identities=20% Similarity=0.172 Sum_probs=57.4
Q ss_pred EEEEecC--CchhhHHHHHHH------HHHHHHHHH--HcCCCCCcCCcEEEEc-----cCCC-ceeeeccCchhHHHHH
Q 045995 868 SVIVKSG--DDCRQEHLAVQL------ISHFYDIFQ--EAGLPLWLRPYEVLVT-----SSYT-ALIETIYDTASLHSIK 931 (1129)
Q Consensus 868 svI~K~G--DDLRQDqL~mQL------i~lmn~Ilk--ke~LdL~L~pY~VLpt-----s~~~-GLIE~V~ns~SL~~I~ 931 (1129)
.+|+|.- .+-|.+++.+-+ .++++++.+ ++|+.....+|-+.-- .... =++|||++. ++.++.
T Consensus 56 kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~ekk~~~~~~~~~ll~EYIeG~-~l~d~~ 134 (229)
T PF06176_consen 56 KYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAEKKIFRYTSSYVLLMEYIEGV-ELNDIE 134 (229)
T ss_pred EEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeeeeeeccceeEEEEEEEEecCe-ecccch
Confidence 4677764 567777776654 245554443 4577666666654331 2222 388999864 322211
Q ss_pred HhCCCC-CcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHHHhhhccCCCCCCcceecCCCCEEEeecccc
Q 045995 932 SRYPNI-TSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFM 1002 (1129)
Q Consensus 932 k~~~~i-~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVvtYILGIGDRHndNILLd~tG~lfHIDFGfI 1002 (1129)
.-.... ..+.+++.+-+ .+=+==||=|++|+||+.+| +.=|||+..
T Consensus 135 ~i~e~~~~ki~~~ikqlH------------------------~~G~~HGD~hpgNFlv~~~~-i~iID~~~k 181 (229)
T PF06176_consen 135 DIDEDLAEKIVEAIKQLH------------------------KHGFYHGDPHPGNFLVSNNG-IRIIDTQGK 181 (229)
T ss_pred hcCHHHHHHHHHHHHHHH------------------------HcCCccCCCCcCcEEEECCc-EEEEECccc
Confidence 100000 01112211110 01112389999999999655 999999543
No 161
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=24.00 E-value=8.6e+02 Score=26.88 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccccC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
+|=.++||||+.+|++.=+|||..-..
T Consensus 158 ~dlkp~Nill~~~~~~kL~Dfg~~~~~ 184 (314)
T cd05099 158 RDLAARNVLVTEDNVMKIADFGLARGV 184 (314)
T ss_pred ccccceeEEEcCCCcEEEccccccccc
Confidence 688899999999999999999987643
No 162
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.24 E-value=41 Score=39.79 Aligned_cols=37 Identities=41% Similarity=0.588 Sum_probs=28.7
Q ss_pred HHHHHhhhc----cCCCCCCcceecCCCCEEEeeccccccC
Q 045995 969 YSLVCYLLQ----VKDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 969 YSVvtYILG----IGDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
.|.++|+-. -.|-.++|+|||++|||=-.|||.|=..
T Consensus 278 vsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~ 318 (516)
T KOG0690|consen 278 VSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEE 318 (516)
T ss_pred HHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhc
Confidence 455566533 3577899999999999999999998544
No 163
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=23.16 E-value=78 Score=34.65 Aligned_cols=27 Identities=48% Similarity=0.738 Sum_probs=23.4
Q ss_pred CCCCCCcceecCCCCEEEeeccccccC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
||=.++||||+.+|.+.=+|||+.-..
T Consensus 125 ~dlkp~NIli~~~~~~kl~Dfg~~~~~ 151 (291)
T cd05612 125 RDLKPENILLDKEGHIKLTDFGFAKKL 151 (291)
T ss_pred cCCCHHHeEECCCCCEEEEecCcchhc
Confidence 677889999999999999999986543
No 164
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=22.99 E-value=1.4e+02 Score=33.19 Aligned_cols=48 Identities=31% Similarity=0.544 Sum_probs=32.8
Q ss_pred CCCCCCcceecCCCCEEEeeccccccCCCCCCCCCCCCccCcHHHHHHH
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVM 1027 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemvevM 1027 (1129)
||=+++|||++.+|.+.=+|||+.....+....... +.=+.+|++..+
T Consensus 145 ~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~~~-~~y~aPE~~~~~ 192 (313)
T cd06633 145 RDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGT-PYWMAPEVILAM 192 (313)
T ss_pred CCCChhhEEECCCCCEEEeecCCCcccCCCCCcccc-ccccChhhcccc
Confidence 788899999999999999999987654433221122 223567766544
No 165
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=22.96 E-value=50 Score=41.55 Aligned_cols=30 Identities=37% Similarity=0.564 Sum_probs=25.8
Q ss_pred cCCCCCCcceec-CCCCEEEeeccccccCCC
Q 045995 978 VKDRHNGNLLLD-EEGHIIHIDFGFMLSNSP 1007 (1129)
Q Consensus 978 IGDRHndNILLd-~tG~lfHIDFGfILg~~p 1007 (1129)
.+|=|++|||++ ..|+|--||||+.=..-+
T Consensus 438 hRDLkp~NIL~~~~~g~lrltyFG~a~~~~~ 468 (612)
T KOG0603|consen 438 HRDLKPGNILLDGSAGHLRLTYFGFWSELER 468 (612)
T ss_pred ecCCChhheeecCCCCcEEEEEechhhhCch
Confidence 589999999995 799999999999866543
No 166
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=22.85 E-value=7e+02 Score=27.28 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|-.++||||+.+|.+.=+|||...+
T Consensus 143 ~dlkp~Nill~~~~~~kl~dfg~~~~ 168 (297)
T cd05089 143 RDLAARNVLVGENLASKIADFGLSRG 168 (297)
T ss_pred CcCCcceEEECCCCeEEECCcCCCcc
Confidence 79999999999999999999998754
No 167
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=22.75 E-value=7.9e+02 Score=26.25 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.7
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=+++||||+.+|.+.=+|||+..
T Consensus 126 ~dl~p~Nill~~~~~~~L~dfg~~~ 150 (262)
T cd05071 126 RDLRAANILVGENLVCKVADFGLAR 150 (262)
T ss_pred cccCcccEEEcCCCcEEeccCCcee
Confidence 6888999999999999999999874
No 168
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=22.71 E-value=1.5e+02 Score=31.05 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=24.1
Q ss_pred cCCCCCCcceecCCCCEEEeecccccc
Q 045995 978 VKDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 978 IGDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
-||=.++||||+.+|.+.-+|||+...
T Consensus 124 h~dl~p~ni~i~~~~~~~l~d~g~~~~ 150 (262)
T cd06613 124 HRDIKGANILLTEDGDVKLADFGVSAQ 150 (262)
T ss_pred ecCCChhhEEECCCCCEEECccccchh
Confidence 378899999999999999999998754
No 169
>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,
Probab=22.51 E-value=6.1e+02 Score=28.54 Aligned_cols=50 Identities=34% Similarity=0.502 Sum_probs=33.6
Q ss_pred CCCCCCcceecCCCCEEEeeccccccCCCCCC----CCCCCCccCcHHHHHHHc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGV----NFESAPFKLTRELLEVMD 1028 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~~p~~~----~~E~vPFRLTkemvevMG 1028 (1129)
+|=+++||||+.+|++.=+|||.......... ..--.|.=+.+|++..++
T Consensus 126 ~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 179 (331)
T cd05597 126 RDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAME 179 (331)
T ss_pred CCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhcc
Confidence 78888999999999999999998643322111 011234456788877654
No 170
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=22.46 E-value=65 Score=34.23 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=28.3
Q ss_pred HhhhccCCCCCCcceecC-CCCEEEeeccccccCCC
Q 045995 973 CYLLQVKDRHNGNLLLDE-EGHIIHIDFGFMLSNSP 1007 (1129)
Q Consensus 973 tYILGIGDRHndNILLd~-tG~lfHIDFGfILg~~p 1007 (1129)
.++|-=||=|.+|||++. ++.+.=|||-++--..|
T Consensus 169 ~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~~~ 204 (235)
T cd05157 169 PIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNYR 204 (235)
T ss_pred CEEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcCch
Confidence 456777999999999998 68899999977654443
No 171
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=22.34 E-value=1.1e+03 Score=26.01 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
+|=+++||||+.+|.+.=+|||....
T Consensus 133 ~dikp~Nill~~~~~~kL~Dfg~~~~ 158 (303)
T cd05110 133 RDLAARNVLVKSPNHVKITDFGLARL 158 (303)
T ss_pred cccccceeeecCCCceEEcccccccc
Confidence 68899999999999999999998864
No 172
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=22.21 E-value=1.5e+02 Score=32.00 Aligned_cols=26 Identities=35% Similarity=0.620 Sum_probs=23.3
Q ss_pred CCCCCCcceecCCCCEEEeecccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
||-+++||||+.+|.+.=+|||..-.
T Consensus 152 ~dlkp~nili~~~~~~kl~dfg~~~~ 177 (291)
T cd06639 152 RDVKGNNILLTTEGGVKLVDFGVSAQ 177 (291)
T ss_pred cCCCHHHEEEcCCCCEEEeecccchh
Confidence 78899999999999999999998654
No 173
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=21.89 E-value=9.9e+02 Score=26.87 Aligned_cols=25 Identities=44% Similarity=0.723 Sum_probs=22.8
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=+++||||+.+|++.=+|||+.-
T Consensus 119 rDikp~NIll~~~~~~kL~DfG~~~ 143 (328)
T cd05593 119 RDLKLENLMLDKDGHIKITDFGLCK 143 (328)
T ss_pred cccCHHHeEECCCCcEEEecCcCCc
Confidence 7889999999999999999999754
No 174
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=21.65 E-value=9.5e+02 Score=25.23 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.9
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
||=+++|||++.+|.+.=+|||+..
T Consensus 130 ~dl~p~nil~~~~~~~~l~d~~~~~ 154 (267)
T cd08224 130 RDIKPANVFITATGVVKLGDLGLGR 154 (267)
T ss_pred CCcChhhEEECCCCcEEEeccceee
Confidence 8999999999999999999999764
No 175
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=21.57 E-value=83 Score=32.91 Aligned_cols=47 Identities=32% Similarity=0.487 Sum_probs=31.6
Q ss_pred CCCCCCcceecCCCCEEEeecccccc--C-CCCCCCCCCCCccCcHHHHH
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLS--N-SPGGVNFESAPFKLTRELLE 1025 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg--~-~p~~~~~E~vPFRLTkemve 1025 (1129)
+|=.++|||++.+|++.-||||...- . .......-..+.=..+|++.
T Consensus 122 ~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 171 (260)
T PF00069_consen 122 RDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQ 171 (260)
T ss_dssp SSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67788999999999999999999863 2 11111112344446677755
No 176
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=21.54 E-value=8.1e+02 Score=27.29 Aligned_cols=25 Identities=48% Similarity=0.712 Sum_probs=22.4
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
+|=.++||||+.+|.+.-+|||+.-
T Consensus 120 ~dlkp~Nill~~~~~~kl~Dfg~~~ 144 (318)
T cd05570 120 RDLKLDNVLLDSEGHIKIADFGMCK 144 (318)
T ss_pred cCCCHHHeEECCCCcEEecccCCCe
Confidence 6778899999999999999999763
No 177
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=21.46 E-value=2.6e+02 Score=36.04 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchhhhhHH
Q 045995 1040 DYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYD 1119 (1129)
Q Consensus 1040 ~~Fr~lc~~af~aLRk~a~lIi~LlelM~~s~lPcf~~~~~~I~~LrdRF~L~LSeeeA~~~v~~LI~~S~~s~~Tr~YD 1119 (1129)
+.|...|.-++..+|.++ ..+.....+..+++ .++..+.++..-.+.+.+|...+..|.+++-+.|.+-+|-
T Consensus 209 q~L~~y~qP~m~~m~~l~-------~~~~~~~~~~~~gg-~vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~~Y~~mLe~ 280 (734)
T KOG2001|consen 209 QDLWFYMQPMMRSMRRLA-------VAATTTVKKVCKGG-AVLSLLQSSIKENLGDRSARMLLKKLLRNASQPYCTMLEE 280 (734)
T ss_pred HHHHHHHhhhHHHHHHHH-------HHHhhhhccccCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence 446666777777777333 33334556655543 7899999999999999999999999999999999999987
Q ss_pred HHH
Q 045995 1120 YYQ 1122 (1129)
Q Consensus 1120 ~fQ 1122 (1129)
|.+
T Consensus 281 Wi~ 283 (734)
T KOG2001|consen 281 WIY 283 (734)
T ss_pred HHh
Confidence 643
No 178
>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6. Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs
Probab=21.15 E-value=6.9e+02 Score=26.67 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=23.0
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
||=+++|||++.+|.+.=+|||..-
T Consensus 128 ~dlkp~nil~~~~~~~kl~dfg~~~ 152 (283)
T cd06617 128 RDVKPSNVLINRNGQVKLCDFGISG 152 (283)
T ss_pred CCCCHHHEEECCCCCEEEeeccccc
Confidence 8999999999999999999999754
No 179
>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi
Probab=21.09 E-value=9.5e+02 Score=25.00 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=25.1
Q ss_pred cCCCCCCcceecCCCCEEEeeccccccCC
Q 045995 978 VKDRHNGNLLLDEEGHIIHIDFGFMLSNS 1006 (1129)
Q Consensus 978 IGDRHndNILLd~tG~lfHIDFGfILg~~ 1006 (1129)
-||=|++||||+.+|++.=+|||++-...
T Consensus 133 h~dl~p~nili~~~~~~kl~d~g~~~~~~ 161 (265)
T cd08217 133 HRDLKPANIFLDANNNVKLGDFGLAKILG 161 (265)
T ss_pred ecCCCHHHEEEecCCCEEEeccccccccc
Confidence 47889999999999999999999776543
No 180
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=20.93 E-value=65 Score=37.50 Aligned_cols=21 Identities=48% Similarity=0.752 Sum_probs=18.6
Q ss_pred CCCCcceecCCCCEEEeeccc
Q 045995 981 RHNGNLLLDEEGHIIHIDFGF 1001 (1129)
Q Consensus 981 RHndNILLd~tG~lfHIDFGf 1001 (1129)
=.+.|||||..|.|=-+|||.
T Consensus 218 vKPSNILlDe~GniKlCDFGI 238 (391)
T KOG0983|consen 218 VKPSNILLDERGNIKLCDFGI 238 (391)
T ss_pred cCccceEEccCCCEEeecccc
Confidence 347999999999999999974
No 181
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=20.85 E-value=1e+03 Score=25.28 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.0
Q ss_pred CCCCCCcceecCCCCEEEeeccccccCC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSNS 1006 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~~ 1006 (1129)
||=.+.||||+.+|.+.=+|||+.....
T Consensus 128 ~dlkp~nil~~~~~~~kl~df~~~~~~~ 155 (263)
T cd05052 128 RDLAARNCLVGENHLVKVADFGLSRLMT 155 (263)
T ss_pred cccCcceEEEcCCCcEEeCCCccccccc
Confidence 7899999999999999999999876543
No 182
>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=20.83 E-value=7e+02 Score=26.75 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
||=++.||||+.+|++.=+|||+..
T Consensus 143 ~dlkp~Nil~~~~~~~~l~dfg~~~ 167 (277)
T cd05062 143 RDLAARNCMVAEDFTVKIGDFGMTR 167 (277)
T ss_pred CCcchheEEEcCCCCEEECCCCCcc
Confidence 6778899999999999999999764
No 183
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=20.80 E-value=8.7e+02 Score=25.54 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=24.1
Q ss_pred CCCCCCcceecCCCCEEEeeccccccC
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSN 1005 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~ 1005 (1129)
||=+++||||+.+|.+.=+|||+....
T Consensus 126 ~di~p~Nili~~~~~~~l~d~g~~~~~ 152 (256)
T cd05039 126 RDLAARNVLVSEDLVAKVSDFGLAKEA 152 (256)
T ss_pred hhcccceEEEeCCCCEEEccccccccc
Confidence 788999999999999999999987654
No 184
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=20.78 E-value=66 Score=35.60 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.7
Q ss_pred HhhhccCCCCCCcceecCCCCEEEeecccc
Q 045995 973 CYLLQVKDRHNGNLLLDEEGHIIHIDFGFM 1002 (1129)
Q Consensus 973 tYILGIGDRHndNILLd~tG~lfHIDFGfI 1002 (1129)
.+.|--||=|.+|||++. |.+.-|||+.+
T Consensus 186 ~~~liHgD~~~~Nil~~~-~~i~lIDfd~~ 214 (313)
T TIGR02906 186 IRGFCHQDYAYHNILLKD-NEVYVIDFDYC 214 (313)
T ss_pred cCceEcCCCCcccEEEeC-CcEEEEECccc
Confidence 355678999999999998 78999999865
No 185
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=20.69 E-value=1.1e+02 Score=33.64 Aligned_cols=27 Identities=30% Similarity=0.584 Sum_probs=23.9
Q ss_pred cCCCCCCcceecCCCCEEEeecccccc
Q 045995 978 VKDRHNGNLLLDEEGHIIHIDFGFMLS 1004 (1129)
Q Consensus 978 IGDRHndNILLd~tG~lfHIDFGfILg 1004 (1129)
-||=+..||||+.+|++.=+|||+...
T Consensus 139 H~dl~p~Nilv~~~~~~~l~dfg~~~~ 165 (292)
T cd06657 139 HRDIKSDSILLTHDGRVKLSDFGFCAQ 165 (292)
T ss_pred cCCCCHHHEEECCCCCEEEccccccee
Confidence 489999999999999999999997644
No 186
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=20.67 E-value=4.6e+02 Score=28.93 Aligned_cols=48 Identities=29% Similarity=0.472 Sum_probs=33.2
Q ss_pred CCCCCCcceecCCCCEEEeeccccccCCCCCCCCCCCCccCcHHHHHHH
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVM 1027 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfILg~~p~~~~~E~vPFRLTkemvevM 1027 (1129)
||=++.|||++.+|.+.=+|||+.....+..... ..+.-+.+|++..+
T Consensus 139 ~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~-~~~~y~aPE~~~~~ 186 (308)
T cd06634 139 RDVKAGNILLSEPGLVKLGDFGSASIMAPANXFV-GTPYWMAPEVILAM 186 (308)
T ss_pred CCCCHHhEEECCCCcEEECCcccceeecCccccc-CCccccCHHHHhhc
Confidence 7888999999999999999999876544332111 23344677776544
No 187
>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.
Probab=20.36 E-value=9.5e+02 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.8
Q ss_pred CCCCCCcceecCCCCEEEeeccccc
Q 045995 979 KDRHNGNLLLDEEGHIIHIDFGFML 1003 (1129)
Q Consensus 979 GDRHndNILLd~tG~lfHIDFGfIL 1003 (1129)
||=+.+|||++.+|.+.=+|||..-
T Consensus 126 ~di~p~nil~~~~~~~~l~df~~~~ 150 (257)
T cd08223 126 RDLKTQNVFLTRTNIIKVGDLGIAR 150 (257)
T ss_pred cCCCchhEEEecCCcEEEecccceE
Confidence 7899999999999999999999753
No 188
>PRK10345 hypothetical protein; Provisional
Probab=20.04 E-value=2.3e+02 Score=30.88 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=44.9
Q ss_pred CCCCcCCcEEEEccCCCcee-eeccC-----chhHHHHHHhCCCCCcHHHHHHHHhCCCChHHHHHHHHHHHhhhhHHHH
Q 045995 899 LPLWLRPYEVLVTSSYTALI-ETIYD-----TASLHSIKSRYPNITSLRDFFVAKYQENSPSFKLAQRNFVESMAGYSLV 972 (1129)
Q Consensus 899 LdL~L~pY~VLpts~~~GLI-E~V~n-----s~SL~~I~k~~~~i~sL~~~f~~~f~~~s~~f~~ar~nFirSlAgYSVv 972 (1129)
.+--++.|.++-|....|.+ +.|.+ +.||.++.++.. +......+.++...| ..|+.-
T Consensus 60 h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~~~------------~~e~~~~~~~~L~~l----~~yLh~ 123 (210)
T PRK10345 60 WSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCR------------YEEDVAQLRQLLKKL----KRYLLD 123 (210)
T ss_pred CcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHccc------------ccHhHHHHHHHHHHH----HHHHHH
Confidence 35567789999998877873 34443 245555544321 000000111122222 122222
Q ss_pred HhhhccCCCCCCcceecCC----CCEEEeec
Q 045995 973 CYLLQVKDRHNGNLLLDEE----GHIIHIDF 999 (1129)
Q Consensus 973 tYILGIGDRHndNILLd~t----G~lfHIDF 999 (1129)
.-|+ ..|=.++|||+++. ++++=|||
T Consensus 124 ~~Iv-hrDlKp~NILl~~~~~~~~~~~LiDg 153 (210)
T PRK10345 124 NRIV-TMELKPQNILCQRISESEVIPVVCDN 153 (210)
T ss_pred CCEe-ecCCCHHHEEEeccCCCCCcEEEEEC
Confidence 2223 56888999999862 37999995
Done!