BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045997
(63 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WE3|O Chain O, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|P Chain P, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|Q Chain Q, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|R Chain R, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|S Chain S, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|T Chain T, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|U Chain U, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|OO Chain o, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|PP Chain p, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|QQ Chain q, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|RR Chain r, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|SS Chain s, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|TT Chain t, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|UU Chain u, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 100
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLH 61
GKV+AVG G NG+ +P+ VKEGD V+ +YGG E+++ ++Y + + +L L
Sbjct: 42 KGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 100
>pdb|1WNR|A Chain A, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|B Chain B, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|C Chain C, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|D Chain D, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|E Chain E, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|F Chain F, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|G Chain G, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
Length = 94
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLH 61
GKV+AVG G NG+ +P+ VKEGD V+ +YGG E+++ ++Y + + +L L
Sbjct: 36 KGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 94
>pdb|1HX5|A Chain A, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|B Chain B, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|C Chain C, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|D Chain D, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|E Chain E, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|F Chain F, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|G Chain G, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1P3H|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|D Chain D, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|E Chain E, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|F Chain F, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|G Chain G, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|H Chain H, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|I Chain I, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|J Chain J, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|K Chain K, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|L Chain L, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|M Chain M, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|N Chain N, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
Length = 99
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 4 GKVVAVGPGARDVNG-KFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLH 61
G VVAVGPG D +G K IP+ V EGDTV+ +YGG E+K ++Y + +L +
Sbjct: 40 GTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVS 98
>pdb|1LEP|A Chain A, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|B Chain B, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|C Chain C, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|D Chain D, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|E Chain E, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|F Chain F, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|G Chain G, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
Length = 99
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 4 GKVVAVGPGARDVNG-KFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLH 61
G VVAVGPG D +G K IPV V EGD V+ +YGG E+K ++Y + +L +
Sbjct: 40 GTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYNGEEYLILSARDVLAVVS 98
>pdb|3NX6|A Chain A, Crystal Structure Of Co-Chaperonin, Groes (Xoo4289) From
Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 95
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 4 GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 60
G+VVA+G G NG VK GD V+ +Y G+ K +Y + ++ IL +
Sbjct: 38 GEVVAIGAGKPLDNGSLHAPVVKVGDKVIYGQYAGSSYKSEGVEYKVLREDDILAVI 94
>pdb|1AON|O Chain O, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|P Chain P, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|Q Chain Q, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|R Chain R, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|S Chain S, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|T Chain T, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|U Chain U, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|O Chain O, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|P Chain P, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|Q Chain Q, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|R Chain R, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|S Chain S, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|T Chain T, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|U Chain U, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1PCQ|O Chain O, Crystal Structure Of Groel-Groes
pdb|1PCQ|P Chain P, Crystal Structure Of Groel-Groes
pdb|1PCQ|Q Chain Q, Crystal Structure Of Groel-Groes
pdb|1PCQ|R Chain R, Crystal Structure Of Groel-Groes
pdb|1PCQ|S Chain S, Crystal Structure Of Groel-Groes
pdb|1PCQ|T Chain T, Crystal Structure Of Groel-Groes
pdb|1PCQ|U Chain U, Crystal Structure Of Groel-Groes
pdb|1PF9|O Chain O, Groel-Groes-Adp
pdb|1PF9|P Chain P, Groel-Groes-Adp
pdb|1PF9|Q Chain Q, Groel-Groes-Adp
pdb|1PF9|R Chain R, Groel-Groes-Adp
pdb|1PF9|S Chain S, Groel-Groes-Adp
pdb|1PF9|T Chain T, Groel-Groes-Adp
pdb|1PF9|U Chain U, Groel-Groes-Adp
pdb|1SVT|O Chain O, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|P Chain P, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|Q Chain Q, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|R Chain R, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|S Chain S, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|T Chain T, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|U Chain U, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|O Chain O, Groel-Groes-Adp7
pdb|1SX4|P Chain P, Groel-Groes-Adp7
pdb|1SX4|Q Chain Q, Groel-Groes-Adp7
pdb|1SX4|R Chain R, Groel-Groes-Adp7
pdb|1SX4|S Chain S, Groel-Groes-Adp7
pdb|1SX4|T Chain T, Groel-Groes-Adp7
pdb|1SX4|U Chain U, Groel-Groes-Adp7
pdb|2C7C|O Chain O, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|P Chain P, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|Q Chain Q, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|R Chain R, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|S Chain S, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|T Chain T, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|U Chain U, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|O Chain O, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|P Chain P, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|Q Chain Q, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|R Chain R, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|S Chain S, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|T Chain T, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|U Chain U, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
Length = 97
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 4 GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE-YGGAEVKLGDKKYHLYEDESILGTLH 61
G+V+AVG G NG+ P+ VK GD V+ + YG K+ +++ + + IL +
Sbjct: 38 GEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96
>pdb|2I99|A Chain A, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom
pdb|2I99|B Chain B, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom
Length = 312
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 21 IPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLHDH 63
+PV+ G ++P Y AE L K YED I + H
Sbjct: 49 VPVTKHRGYLGVMPAYSAAEDALTTKLVTFYEDRGITSVVPSH 91
>pdb|2GNU|H Chain H, The Crystallization Of Reaction Center From Rhodobacter
Sphaeroides Occurs Via A New Route
Length = 235
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 2 ISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34
I+GKVV + + +F+ V +K+G T LLP
Sbjct: 150 IAGKVVDIWVDIPEQMARFLEVELKDGSTRLLP 182
>pdb|1OGV|H Chain H, Lipidic Cubic Phase Crystal Structure Of The
Photosynthetic Reaction Centre From Rhodobacter
Sphaeroides
Length = 250
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 2 ISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34
I+GKVV + + +F+ V +K+G T LLP
Sbjct: 150 IAGKVVDIWVDIPEQMARFLEVELKDGSTRLLP 182
>pdb|1AIG|H Chain H, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The D+qb-Charge Separated State
pdb|1AIG|P Chain P, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The D+qb-Charge Separated State
pdb|1AIJ|H Chain H, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State
pdb|1AIJ|T Chain T, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State
pdb|1DS8|H Chain H, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Cd2+
pdb|1DS8|T Chain T, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Cd2+
pdb|1DV3|H Chain H, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Separated D+qaqb-State With
The Proton Transfer Inhibitor Cd2+
pdb|1DV3|T Chain T, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Separated D+qaqb-State With
The Proton Transfer Inhibitor Cd2+
pdb|1DV6|H Chain H, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Zn2+
pdb|1DV6|T Chain T, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Zn2+
Length = 260
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 2 ISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34
I+GKVV + + +F+ V +K+G T LLP
Sbjct: 160 IAGKVVDIWVDIPEQMARFLEVELKDGSTRLLP 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.141 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,300,712
Number of Sequences: 62578
Number of extensions: 82856
Number of successful extensions: 195
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 15
length of query: 63
length of database: 14,973,337
effective HSP length: 34
effective length of query: 29
effective length of database: 12,845,685
effective search space: 372524865
effective search space used: 372524865
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)