Query 045997
Match_columns 63
No_of_seqs 120 out of 1034
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0234 GroS Co-chaperonin Gro 99.9 4.7E-26 1E-30 138.2 7.5 62 1-62 35-96 (96)
2 PRK00364 groES co-chaperonin G 99.9 3.8E-25 8.3E-30 133.4 8.4 61 1-61 35-95 (95)
3 cd00320 cpn10 Chaperonin 10 Kd 99.9 3.4E-24 7.3E-29 128.8 7.3 60 1-60 34-93 (93)
4 PF00166 Cpn10: Chaperonin 10 99.9 4.8E-23 1E-27 123.3 8.3 59 2-60 35-93 (93)
5 PTZ00414 10 kDa heat shock pro 99.9 9.6E-23 2.1E-27 124.5 7.3 56 1-61 44-99 (100)
6 PRK14533 groES co-chaperonin G 99.9 1.5E-22 3.2E-27 121.7 7.3 57 1-62 35-91 (91)
7 KOG1641 Mitochondrial chaperon 99.8 2.5E-20 5.4E-25 114.3 4.5 60 1-60 43-103 (104)
8 PF08240 ADH_N: Alcohol dehydr 94.5 0.041 8.8E-07 32.3 2.6 24 3-35 40-63 (109)
9 COG1062 AdhC Zn-dependent alco 93.8 0.055 1.2E-06 39.7 2.5 22 3-33 64-85 (366)
10 KOG1197 Predicted quinone oxid 92.9 0.097 2.1E-06 37.7 2.6 24 3-35 73-96 (336)
11 KOG0025 Zn2+-binding dehydroge 92.6 0.3 6.6E-06 35.6 4.8 29 3-40 86-115 (354)
12 TIGR03366 HpnZ_proposed putati 90.7 0.33 7.1E-06 32.5 3.2 29 3-35 7-36 (280)
13 COG4384 Mu-like prophage prote 90.6 1.2 2.6E-05 30.3 5.8 40 16-55 87-133 (203)
14 COG0604 Qor NADPH:quinone redu 90.1 0.55 1.2E-05 33.0 4.0 40 3-56 66-108 (326)
15 TIGR02819 fdhA_non_GSH formald 88.4 0.51 1.1E-05 33.6 2.9 23 3-34 70-92 (393)
16 cd08230 glucose_DH Glucose deh 87.8 0.57 1.2E-05 32.2 2.7 22 3-34 66-87 (355)
17 KOG0022 Alcohol dehydrogenase, 87.3 0.6 1.3E-05 34.3 2.7 21 3-32 70-90 (375)
18 TIGR01202 bchC 2-desacetyl-2-h 85.6 0.95 2.1E-05 30.8 2.9 45 3-57 67-115 (308)
19 COG1064 AdhP Zn-dependent alco 84.8 0.88 1.9E-05 33.0 2.5 22 3-33 66-87 (339)
20 PLN02586 probable cinnamyl alc 83.8 1.2 2.7E-05 31.0 2.9 22 3-33 75-96 (360)
21 cd08237 ribitol-5-phosphate_DH 82.7 4.2 9.2E-05 28.0 5.1 22 3-35 67-88 (341)
22 TIGR02822 adh_fam_2 zinc-bindi 82.7 1.5 3.3E-05 30.1 2.9 22 3-33 65-86 (329)
23 PRK10309 galactitol-1-phosphat 82.2 1.5 3.3E-05 29.9 2.7 23 3-34 62-84 (347)
24 cd08281 liver_ADH_like1 Zinc-d 81.9 1.6 3.5E-05 30.3 2.8 22 3-33 70-91 (371)
25 COG3450 Predicted enzyme of th 81.5 4.7 0.0001 25.2 4.5 31 21-51 82-114 (116)
26 cd08301 alcohol_DH_plants Plan 80.8 1.8 3.8E-05 30.0 2.7 23 3-34 65-87 (369)
27 PLN02178 cinnamyl-alcohol dehy 80.8 1.9 4E-05 30.5 2.9 22 3-33 69-90 (375)
28 COG1329 Transcriptional regula 80.7 1.5 3.3E-05 29.1 2.2 36 23-58 3-48 (166)
29 PF06890 Phage_Mu_Gp45: Bacter 80.0 11 0.00024 24.6 6.1 27 16-43 66-92 (162)
30 cd08238 sorbose_phosphate_red 80.0 2.1 4.6E-05 30.4 2.9 24 3-34 71-94 (410)
31 TIGR02818 adh_III_F_hyde S-(hy 79.6 2.3 4.9E-05 29.7 2.9 23 3-34 64-86 (368)
32 PLN02827 Alcohol dehydrogenase 79.4 1.9 4.1E-05 30.3 2.5 23 3-34 72-94 (378)
33 cd08293 PTGR2 Prostaglandin re 79.0 2.3 4.9E-05 28.8 2.8 23 3-34 77-99 (345)
34 cd08300 alcohol_DH_class_III c 78.7 2.3 5.1E-05 29.5 2.8 23 3-34 65-87 (368)
35 cd08239 THR_DH_like L-threonin 78.6 2.5 5.5E-05 28.6 2.9 24 3-35 63-86 (339)
36 PLN02740 Alcohol dehydrogenase 78.6 2.3 4.9E-05 29.8 2.7 23 3-34 74-96 (381)
37 cd08269 Zn_ADH9 Alcohol dehydr 77.6 6.6 0.00014 25.8 4.6 24 3-35 60-83 (312)
38 PF01079 Hint: Hint module; I 77.2 6.1 0.00013 26.8 4.4 25 14-38 20-45 (217)
39 TIGR03451 mycoS_dep_FDH mycoth 77.1 2.9 6.3E-05 28.8 2.9 22 3-33 63-84 (358)
40 cd08277 liver_alcohol_DH_like 77.0 2.7 5.9E-05 29.1 2.7 23 3-34 64-86 (365)
41 PLN02514 cinnamyl-alcohol dehy 76.9 3 6.5E-05 28.9 2.9 22 3-33 72-93 (357)
42 TIGR03214 ura-cupin putative a 76.5 7.3 0.00016 26.7 4.7 45 7-53 206-253 (260)
43 PRK05889 putative acetyl-CoA c 75.9 9.5 0.00021 20.8 4.3 29 32-60 42-70 (71)
44 KOG0024 Sorbitol dehydrogenase 75.8 1.2 2.7E-05 32.6 0.8 24 3-35 70-93 (354)
45 cd08260 Zn_ADH6 Alcohol dehydr 75.7 4.4 9.5E-05 27.4 3.4 22 3-33 63-84 (345)
46 cd08264 Zn_ADH_like2 Alcohol d 75.1 3.5 7.6E-05 27.5 2.8 23 3-34 63-85 (325)
47 PRK10083 putative oxidoreducta 74.7 3.6 7.8E-05 27.7 2.8 22 3-33 62-83 (339)
48 cd08233 butanediol_DH_like (2R 74.3 3.5 7.7E-05 28.1 2.7 22 3-33 73-94 (351)
49 TIGR00692 tdh L-threonine 3-de 74.2 3.7 8E-05 27.9 2.7 23 3-34 64-86 (340)
50 PF10844 DUF2577: Protein of u 74.2 3.2 7E-05 24.7 2.2 22 24-51 76-97 (100)
51 TIGR02817 adh_fam_1 zinc-bindi 73.5 4.2 9.1E-05 27.2 2.8 23 3-34 67-89 (336)
52 cd05278 FDH_like Formaldehyde 72.4 4.4 9.6E-05 27.2 2.8 22 3-33 63-84 (347)
53 cd08291 ETR_like_1 2-enoyl thi 71.9 4.7 0.0001 27.2 2.8 24 3-34 69-92 (324)
54 cd08287 FDH_like_ADH3 formalde 71.6 4.5 9.8E-05 27.3 2.7 22 3-33 62-83 (345)
55 cd08278 benzyl_alcohol_DH Benz 71.5 4.6 0.0001 28.0 2.8 22 3-33 64-85 (365)
56 COG2140 Thermophilic glucose-6 71.2 10 0.00022 26.0 4.3 36 16-51 121-157 (209)
57 cd08235 iditol_2_DH_like L-idi 71.0 4.8 0.0001 27.1 2.7 22 3-33 62-83 (343)
58 cd08261 Zn_ADH7 Alcohol dehydr 70.9 11 0.00024 25.3 4.5 22 3-33 62-83 (337)
59 cd08255 2-desacetyl-2-hydroxye 70.8 8.7 0.00019 25.0 3.8 23 3-34 29-51 (277)
60 cd05188 MDR Medium chain reduc 70.6 5.7 0.00012 25.2 2.9 24 3-35 38-61 (271)
61 cd08292 ETR_like_2 2-enoyl thi 70.6 5.3 0.00012 26.4 2.8 24 3-35 67-90 (324)
62 cd08262 Zn_ADH8 Alcohol dehydr 70.1 5.2 0.00011 26.9 2.7 23 3-34 72-95 (341)
63 PF10794 DUF2606: Protein of u 69.8 7.3 0.00016 24.9 3.1 31 12-42 82-112 (131)
64 cd08286 FDH_like_ADH2 formalde 69.8 5.7 0.00012 26.9 2.9 23 3-34 63-85 (345)
65 cd08285 NADP_ADH NADP(H)-depen 69.5 5.7 0.00012 27.1 2.9 23 3-34 62-84 (351)
66 cd05284 arabinose_DH_like D-ar 69.3 5.6 0.00012 26.7 2.7 23 3-34 66-88 (340)
67 cd08284 FDH_like_2 Glutathione 69.2 5.7 0.00012 26.7 2.8 22 3-33 62-83 (344)
68 cd08236 sugar_DH NAD(P)-depend 68.6 6 0.00013 26.7 2.8 23 3-34 61-83 (343)
69 cd05279 Zn_ADH1 Liver alcohol 68.6 6.2 0.00013 27.3 2.9 23 3-34 62-84 (365)
70 cd08283 FDH_like_1 Glutathione 68.4 6.2 0.00013 27.7 2.9 23 3-34 63-85 (386)
71 PLN02702 L-idonate 5-dehydroge 67.8 6.2 0.00013 27.2 2.8 22 3-33 82-103 (364)
72 PF02559 CarD_CdnL_TRCF: CarD- 67.8 5.1 0.00011 23.2 2.1 29 25-53 2-38 (98)
73 cd08282 PFDH_like Pseudomonas 67.5 6.5 0.00014 27.3 2.8 22 3-33 62-83 (375)
74 cd08232 idonate-5-DH L-idonate 67.3 6.4 0.00014 26.5 2.7 22 3-33 62-83 (339)
75 cd07376 PLPDE_III_DSD_D-TA_lik 67.3 12 0.00025 26.0 4.1 37 24-61 305-342 (345)
76 cd08258 Zn_ADH4 Alcohol dehydr 67.3 6.9 0.00015 26.4 2.9 23 3-34 64-86 (306)
77 COG1063 Tdh Threonine dehydrog 67.2 7.6 0.00016 27.4 3.2 23 3-35 64-86 (350)
78 cd05283 CAD1 Cinnamyl alcohol 66.9 6.6 0.00014 26.7 2.7 22 3-33 62-83 (337)
79 PF01455 HupF_HypC: HupF/HypC 66.6 13 0.00029 20.8 3.6 32 3-34 6-47 (68)
80 TIGR00739 yajC preprotein tran 66.5 20 0.00044 20.8 4.4 25 24-48 37-62 (84)
81 cd08297 CAD3 Cinnamyl alcohol 66.3 20 0.00044 24.1 5.0 22 3-33 65-86 (341)
82 PRK05396 tdh L-threonine 3-deh 65.3 7.5 0.00016 26.3 2.8 23 3-34 66-88 (341)
83 cd08279 Zn_ADH_class_III Class 65.3 7.4 0.00016 26.8 2.8 22 3-33 62-83 (363)
84 cd08290 ETR 2-enoyl thioester 64.6 7.8 0.00017 26.0 2.7 24 3-35 72-95 (341)
85 cd08259 Zn_ADH5 Alcohol dehydr 64.5 8.2 0.00018 25.5 2.8 23 3-34 63-85 (332)
86 PF11302 DUF3104: Protein of u 64.5 4.6 0.0001 23.6 1.4 15 23-37 4-18 (75)
87 cd08231 MDR_TM0436_like Hypoth 64.4 8.3 0.00018 26.4 2.9 29 3-34 63-91 (361)
88 cd08246 crotonyl_coA_red croto 64.2 7.9 0.00017 27.0 2.8 23 3-34 90-112 (393)
89 cd08274 MDR9 Medium chain dehy 63.8 8.3 0.00018 25.9 2.7 23 3-34 86-108 (350)
90 cd08240 6_hydroxyhexanoate_dh_ 63.8 8.1 0.00017 26.2 2.7 23 3-34 75-97 (350)
91 smart00829 PKS_ER Enoylreducta 63.5 8.5 0.00018 24.4 2.6 23 3-34 32-54 (288)
92 COG4079 Uncharacterized protei 62.6 13 0.00029 26.5 3.6 28 24-52 261-292 (293)
93 TIGR01751 crot-CoA-red crotony 62.5 8.8 0.00019 27.0 2.8 23 3-34 86-108 (398)
94 cd08266 Zn_ADH_like1 Alcohol d 62.4 9.1 0.0002 25.1 2.7 23 3-34 66-88 (342)
95 PTZ00354 alcohol dehydrogenase 62.4 9 0.0002 25.3 2.7 22 3-33 67-88 (334)
96 TIGR00074 hypC_hupF hydrogenas 61.9 23 0.00049 20.4 4.0 31 4-34 7-45 (76)
97 PRK09422 ethanol-active dehydr 61.8 9.8 0.00021 25.5 2.8 22 3-33 62-83 (338)
98 cd05285 sorbitol_DH Sorbitol d 61.7 9.1 0.0002 26.0 2.6 22 3-33 63-84 (343)
99 PRK10754 quinone oxidoreductas 61.5 10 0.00023 25.3 2.9 23 3-34 66-88 (327)
100 cd08299 alcohol_DH_class_I_II_ 60.8 10 0.00022 26.5 2.8 23 3-34 69-91 (373)
101 cd06555 ASCH_PF0470_like ASC-1 60.5 7.7 0.00017 23.9 1.9 15 24-38 31-45 (109)
102 cd08298 CAD2 Cinnamyl alcohol 60.1 27 0.00059 23.3 4.7 22 3-33 67-88 (329)
103 cd08268 MDR2 Medium chain dehy 59.7 11 0.00024 24.5 2.7 22 3-33 66-87 (328)
104 PF06560 GPI: Glucose-6-phosph 59.7 20 0.00043 23.9 3.9 32 19-50 108-140 (182)
105 cd08254 hydroxyacyl_CoA_DH 6-h 59.4 12 0.00025 24.9 2.8 22 3-33 65-86 (338)
106 cd08245 CAD Cinnamyl alcohol d 59.3 13 0.00029 24.8 3.1 22 3-33 62-83 (330)
107 cd05195 enoyl_red enoyl reduct 59.1 11 0.00025 23.7 2.6 23 3-34 36-58 (293)
108 cd08234 threonine_DH_like L-th 59.1 11 0.00025 25.1 2.7 22 3-33 61-82 (334)
109 cd08265 Zn_ADH3 Alcohol dehydr 58.1 12 0.00025 26.2 2.7 22 3-33 96-117 (384)
110 cd08248 RTN4I1 Human Reticulon 57.6 11 0.00025 25.3 2.6 23 3-34 82-104 (350)
111 PRK04190 glucose-6-phosphate i 57.3 27 0.00058 23.2 4.3 35 16-50 115-150 (191)
112 PF07883 Cupin_2: Cupin domain 57.1 23 0.0005 18.3 3.3 29 22-50 38-67 (71)
113 cd08244 MDR_enoyl_red Possible 57.0 13 0.00028 24.5 2.7 23 3-34 68-90 (324)
114 cd05282 ETR_like 2-enoyl thioe 57.0 13 0.00029 24.5 2.7 24 3-35 65-88 (323)
115 TIGR03784 marine_sortase sorta 56.9 17 0.00037 23.8 3.2 32 24-55 108-139 (174)
116 cd08251 polyketide_synthase po 56.8 14 0.0003 23.8 2.7 23 3-34 46-68 (303)
117 TIGR01511 ATPase-IB1_Cu copper 56.8 21 0.00045 26.9 4.1 34 4-42 128-164 (562)
118 smart00696 DM9 Repeats found i 56.8 20 0.00043 20.2 3.1 40 4-45 25-64 (71)
119 PRK02268 hypothetical protein; 56.7 6 0.00013 25.5 1.0 14 20-33 30-44 (141)
120 PLN03154 putative allyl alcoho 56.7 12 0.00026 26.0 2.6 22 3-33 83-104 (348)
121 cd08270 MDR4 Medium chain dehy 56.4 14 0.0003 24.2 2.7 23 3-34 60-82 (305)
122 COG3264 Small-conductance mech 56.3 8.6 0.00019 31.2 2.0 16 24-39 660-675 (835)
123 cd08256 Zn_ADH2 Alcohol dehydr 56.1 14 0.00031 25.1 2.9 24 3-33 71-94 (350)
124 cd08249 enoyl_reductase_like e 55.4 14 0.00031 25.1 2.8 23 3-34 63-85 (339)
125 cd08263 Zn_ADH10 Alcohol dehyd 55.2 14 0.0003 25.4 2.7 25 3-33 62-86 (367)
126 TIGR03201 dearomat_had 6-hydro 55.1 16 0.00036 25.0 3.0 22 3-34 62-83 (349)
127 cd08296 CAD_like Cinnamyl alco 54.6 16 0.00035 24.7 2.9 22 3-33 63-84 (333)
128 PRK13771 putative alcohol dehy 54.5 15 0.00034 24.5 2.8 23 3-34 63-85 (334)
129 cd08273 MDR8 Medium chain dehy 54.5 15 0.00034 24.3 2.8 23 3-34 66-88 (331)
130 PRK05585 yajC preprotein trans 54.0 41 0.0009 20.4 4.4 28 24-52 52-80 (106)
131 PF02699 YajC: Preprotein tran 53.9 4.3 9.3E-05 23.5 0.0 29 24-53 36-65 (82)
132 cd04451 S1_IF1 S1_IF1: Transla 53.5 11 0.00023 20.3 1.6 11 24-34 40-50 (64)
133 COG4043 Preprotein translocase 53.1 8.9 0.00019 23.9 1.3 12 24-35 33-44 (111)
134 cd08271 MDR5 Medium chain dehy 52.9 17 0.00037 23.8 2.7 23 3-34 65-87 (325)
135 cd08253 zeta_crystallin Zeta-c 52.7 16 0.00035 23.6 2.6 23 3-34 66-88 (325)
136 cd08267 MDR1 Medium chain dehy 52.4 17 0.00037 23.7 2.7 23 3-34 67-89 (319)
137 cd00148 PROF Profilin binds ac 52.4 17 0.00038 22.2 2.6 18 39-56 60-77 (127)
138 cd05286 QOR2 Quinone oxidoredu 52.0 19 0.00042 23.1 2.8 23 3-34 63-85 (320)
139 PRK09880 L-idonate 5-dehydroge 51.4 17 0.00037 24.9 2.7 21 3-34 68-88 (343)
140 cd08272 MDR6 Medium chain dehy 51.2 19 0.00041 23.4 2.7 23 3-34 66-88 (326)
141 cd08250 Mgc45594_like Mgc45594 51.1 20 0.00043 23.9 2.9 23 3-34 69-91 (329)
142 PF00235 Profilin: Profilin; 50.8 17 0.00037 21.5 2.3 18 38-55 58-75 (121)
143 PRK10413 hydrogenase 2 accesso 50.7 47 0.001 19.4 4.1 11 24-34 42-52 (82)
144 KOG0023 Alcohol dehydrogenase, 50.4 15 0.00033 27.1 2.3 22 3-33 74-95 (360)
145 cd08247 AST1_like AST1 is a cy 50.3 20 0.00043 24.3 2.8 24 3-34 67-90 (352)
146 PRK05886 yajC preprotein trans 49.9 24 0.00052 21.7 2.9 28 24-52 38-66 (109)
147 PF09285 Elong-fact-P_C: Elong 49.8 23 0.0005 19.4 2.5 15 21-35 34-48 (56)
148 PF05899 Cupin_3: Protein of u 49.3 12 0.00026 20.8 1.4 18 22-39 45-63 (74)
149 PRK06763 F0F1 ATP synthase sub 49.0 20 0.00044 24.7 2.7 33 2-34 42-84 (213)
150 PF01356 A_amylase_inhib: Alph 49.0 15 0.00032 21.1 1.7 23 16-38 34-57 (68)
151 PF01052 SpoA: Surface present 48.9 30 0.00065 19.0 3.0 26 24-49 28-55 (77)
152 PF07378 FlbT: Flagellar prote 48.7 24 0.00051 22.2 2.8 34 23-57 3-42 (126)
153 cd08252 AL_MDR Arginate lyase 48.6 21 0.00045 23.8 2.6 23 3-34 68-90 (336)
154 PF15057 DUF4537: Domain of un 48.4 17 0.00038 22.4 2.1 14 22-35 53-66 (124)
155 PF12852 Cupin_6: Cupin 48.4 16 0.00036 23.0 2.1 25 17-41 51-75 (186)
156 PF13856 Gifsy-2: ATP-binding 48.3 48 0.001 19.2 3.9 34 19-54 52-85 (95)
157 PRK00276 infA translation init 48.2 15 0.00032 20.5 1.6 14 24-37 46-61 (72)
158 COG0309 HypE Hydrogenase matur 48.1 14 0.0003 27.0 1.9 28 12-39 148-175 (339)
159 smart00392 PROF Profilin. Bind 48.1 21 0.00045 21.8 2.4 18 39-56 62-79 (129)
160 COG4506 Uncharacterized protei 47.9 18 0.00039 23.5 2.2 23 38-60 55-77 (143)
161 PF13533 Biotin_lipoyl_2: Biot 47.1 20 0.00042 18.5 1.9 16 17-32 10-25 (50)
162 PRK11171 hypothetical protein; 47.0 50 0.0011 22.6 4.4 42 10-53 214-258 (266)
163 PRK06531 yajC preprotein trans 46.8 53 0.0012 20.3 4.1 36 24-59 36-73 (113)
164 cd05281 TDH Threonine dehydrog 46.8 23 0.0005 24.0 2.7 22 3-33 66-87 (341)
165 PF05203 Hom_end_hint: Hom_end 46.7 33 0.00072 23.2 3.5 34 8-41 3-37 (215)
166 PRK10689 transcription-repair 46.6 35 0.00077 28.4 4.1 32 23-54 475-514 (1147)
167 cd05276 p53_inducible_oxidored 46.5 23 0.0005 22.8 2.6 23 3-34 66-88 (323)
168 cd08242 MDR_like Medium chain 46.4 24 0.00053 23.4 2.8 19 3-33 59-77 (319)
169 PF13403 Hint_2: Hint domain 46.3 63 0.0014 20.3 4.5 36 14-49 10-45 (147)
170 KOG3309 Ferredoxin [Energy pro 46.2 6.3 0.00014 26.0 -0.1 21 14-34 49-69 (159)
171 PF12791 RsgI_N: Anti-sigma fa 46.0 29 0.00063 18.1 2.5 21 15-35 12-36 (56)
172 cd05288 PGDH Prostaglandin deh 45.8 22 0.00047 23.6 2.4 21 3-34 73-93 (329)
173 PF09173 eIF2_C: Initiation fa 44.8 42 0.0009 19.9 3.3 34 2-36 42-75 (88)
174 cd08275 MDR3 Medium chain dehy 44.8 27 0.00059 22.9 2.8 23 3-34 65-87 (337)
175 TIGR00580 mfd transcription-re 44.7 39 0.00085 27.5 4.0 32 23-54 326-365 (926)
176 PF01878 EVE: EVE domain; Int 44.1 13 0.00029 22.8 1.1 13 24-36 39-51 (143)
177 PRK12784 hypothetical protein; 43.8 35 0.00075 20.3 2.8 23 5-32 44-66 (84)
178 PF13759 2OG-FeII_Oxy_5: Putat 43.8 18 0.00039 20.9 1.6 22 17-38 62-83 (101)
179 cd05289 MDR_like_2 alcohol deh 43.8 27 0.0006 22.4 2.6 24 3-35 68-91 (309)
180 PRK10671 copA copper exporting 43.7 40 0.00088 26.6 3.9 34 4-42 359-395 (834)
181 PF09871 DUF2098: Uncharacteri 43.6 71 0.0015 19.1 4.2 34 24-57 2-40 (91)
182 TIGR03102 halo_cynanin halocya 43.3 34 0.00074 21.0 2.9 40 5-44 24-68 (115)
183 cd00165 S4 S4/Hsp/ tRNA synthe 43.3 40 0.00086 16.7 2.8 28 24-51 41-69 (70)
184 cd08243 quinone_oxidoreductase 43.1 30 0.00066 22.5 2.8 21 3-34 65-85 (320)
185 cd03703 aeIF5B_II aeIF5B_II: T 43.0 34 0.00074 21.1 2.8 19 24-42 26-47 (110)
186 PRK10409 hydrogenase assembly 43.0 15 0.00032 22.0 1.1 11 24-34 41-51 (90)
187 cd05829 Sortase_E Sortase E (S 43.0 34 0.00074 21.3 2.9 20 24-43 72-91 (144)
188 PF03293 Pox_RNA_pol: Poxvirus 42.8 62 0.0013 21.3 4.1 35 23-57 97-131 (160)
189 TIGR02824 quinone_pig3 putativ 42.1 31 0.00068 22.3 2.7 23 3-34 66-88 (325)
190 PF13464 DUF4115: Domain of un 42.0 61 0.0013 17.8 4.4 33 18-50 29-61 (77)
191 TIGR03635 S17_bact 30S ribosom 41.3 14 0.0003 21.0 0.8 12 24-35 48-59 (71)
192 PF00278 Orn_DAP_Arg_deC: Pyri 41.3 26 0.00057 20.2 2.1 18 21-38 79-96 (116)
193 TIGR03595 Obg_CgtA_exten Obg f 41.0 18 0.00038 20.3 1.2 14 23-36 52-65 (69)
194 TIGR02825 B4_12hDH leukotriene 40.6 27 0.00059 23.4 2.3 19 3-33 66-84 (325)
195 cd08276 MDR7 Medium chain dehy 40.5 35 0.00075 22.5 2.8 23 3-34 66-88 (336)
196 smart00783 A_amylase_inhib Alp 40.5 28 0.00061 20.0 2.0 24 16-39 35-59 (69)
197 KOG0207 Cation transport ATPas 40.5 25 0.00053 29.1 2.3 32 1-32 397-445 (951)
198 smart00841 Elong-fact-P_C Elon 39.8 25 0.00055 19.2 1.7 28 17-44 18-47 (56)
199 TIGR00523 eIF-1A eukaryotic/ar 39.7 18 0.0004 21.8 1.2 17 23-39 56-72 (99)
200 PF04622 ERG2_Sigma1R: ERG2 an 39.4 1.2E+02 0.0027 20.7 5.3 42 3-50 127-168 (216)
201 cd06819 PLPDE_III_LS_D-TA Type 39.1 63 0.0014 22.4 4.0 36 24-60 316-352 (358)
202 TIGR02375 pseudoazurin pseudoa 38.6 25 0.00055 21.6 1.8 21 23-43 17-38 (116)
203 TIGR01512 ATPase-IB2_Cd heavy 38.2 59 0.0013 24.4 3.9 22 17-42 106-127 (536)
204 PRK12426 elongation factor P; 37.7 90 0.002 20.8 4.4 40 16-55 45-87 (185)
205 PF10377 ATG11: Autophagy-rela 37.7 55 0.0012 20.4 3.2 35 23-57 41-82 (129)
206 cd05794 S1_EF-P_repeat_2 S1_EF 37.7 28 0.0006 19.1 1.6 27 18-44 19-47 (56)
207 PF05721 PhyH: Phytanoyl-CoA d 37.3 25 0.00054 21.4 1.6 18 19-36 178-195 (211)
208 PRK04542 elongation factor P; 37.3 90 0.002 20.9 4.3 39 16-54 47-88 (189)
209 PF00924 MS_channel: Mechanose 37.0 90 0.002 19.7 4.2 21 24-44 60-80 (206)
210 PF06236 MelC1: Tyrosinase co- 37.0 51 0.0011 21.0 3.0 18 38-55 70-87 (125)
211 PRK14578 elongation factor P; 36.8 1E+02 0.0022 20.6 4.5 40 16-55 47-89 (187)
212 PF02643 DUF192: Uncharacteriz 36.3 12 0.00026 22.4 0.0 23 6-34 85-107 (108)
213 PF12195 End_beta_barrel: Beta 36.2 22 0.00047 21.1 1.1 16 24-39 27-42 (83)
214 PF09269 DUF1967: Domain of un 36.2 20 0.00044 20.0 1.0 13 24-36 53-65 (69)
215 COG0231 Efp Translation elonga 36.1 84 0.0018 19.7 3.9 40 16-55 47-89 (131)
216 cd08294 leukotriene_B4_DH_like 35.8 85 0.0018 20.8 4.1 11 24-34 77-87 (329)
217 PRK02290 3-dehydroquinate synt 35.8 35 0.00075 25.1 2.3 19 16-34 306-325 (344)
218 PRK03760 hypothetical protein; 35.7 31 0.00068 21.2 1.8 13 22-34 103-115 (117)
219 CHL00010 infA translation init 35.7 31 0.00066 19.7 1.7 14 24-37 46-61 (78)
220 cd06166 Sortase_D_5 Sortase D 35.7 54 0.0012 19.8 2.9 31 24-55 64-94 (126)
221 TIGR02480 fliN flagellar motor 35.5 77 0.0017 17.7 3.3 26 24-49 28-55 (77)
222 smart00739 KOW KOW (Kyprides, 35.4 36 0.00078 14.7 1.6 15 25-39 2-18 (28)
223 COG3794 PetE Plastocyanin [Ene 35.0 28 0.00061 22.0 1.6 14 23-36 56-69 (128)
224 PRK00794 flbT flagellar biosyn 34.9 49 0.0011 21.0 2.7 34 23-57 6-44 (132)
225 cd04486 YhcR_OBF_like YhcR_OBF 34.8 88 0.0019 17.6 3.5 32 3-34 3-54 (78)
226 PF06251 Caps_synth_GfcC: Caps 34.6 32 0.0007 22.9 1.9 29 3-35 175-203 (229)
227 PF05382 Amidase_5: Bacterioph 34.6 56 0.0012 21.0 2.9 34 23-57 74-107 (145)
228 TIGR01525 ATPase-IB_hvy heavy 34.3 81 0.0017 23.7 4.1 22 17-42 107-128 (556)
229 PRK10929 putative mechanosensi 34.1 33 0.00072 28.7 2.2 34 24-57 935-977 (1109)
230 COG3061 OapA Cell envelope opa 33.9 66 0.0014 22.6 3.3 32 24-55 199-235 (242)
231 PRK06033 hypothetical protein; 33.9 86 0.0019 18.1 3.4 26 24-49 27-54 (83)
232 cd06820 PLPDE_III_LS_D-TA_like 33.7 84 0.0018 21.8 3.9 36 24-60 311-347 (353)
233 PRK10334 mechanosensitive chan 33.5 72 0.0016 22.3 3.6 34 24-57 129-171 (286)
234 PF02933 CDC48_2: Cell divisio 33.1 40 0.00086 18.0 1.8 19 23-42 17-35 (64)
235 PRK05610 rpsQ 30S ribosomal pr 32.9 23 0.00051 20.7 0.9 12 24-35 53-64 (84)
236 cd08241 QOR1 Quinone oxidoredu 32.9 55 0.0012 21.1 2.7 23 3-34 66-88 (323)
237 PF09953 DUF2187: Uncharacteri 32.7 71 0.0015 17.7 2.8 20 25-44 4-24 (57)
238 PRK09859 multidrug efflux syst 32.7 1.2E+02 0.0027 21.4 4.7 25 20-44 344-372 (385)
239 PF11901 DUF3421: Protein of u 32.5 41 0.00089 20.5 2.0 38 4-43 81-118 (119)
240 PRK12791 flbT flagellar biosyn 32.4 56 0.0012 20.7 2.6 34 23-57 5-44 (131)
241 PRK00409 recombination and DNA 32.4 63 0.0014 25.8 3.4 23 23-45 635-659 (782)
242 TIGR02178 yeiP elongation fact 32.2 1.1E+02 0.0023 20.5 4.1 40 16-55 45-87 (186)
243 cd06812 PLPDE_III_DSD_D-TA_lik 32.1 93 0.002 21.8 4.0 36 24-60 331-368 (374)
244 PF01959 DHQS: 3-dehydroquinat 31.9 44 0.00095 24.7 2.3 18 16-33 316-334 (354)
245 PRK09838 periplasmic copper-bi 31.9 67 0.0014 19.8 2.9 23 24-52 88-110 (115)
246 COG0511 AccB Biotin carboxyl c 31.9 38 0.00083 21.2 1.8 15 18-32 79-93 (140)
247 cd04466 S1_YloQ_GTPase S1_YloQ 31.7 31 0.00066 18.2 1.2 12 24-35 37-48 (68)
248 PF04945 YHS: YHS domain; Int 31.5 36 0.00078 17.2 1.4 19 36-54 13-31 (47)
249 PF01426 BAH: BAH domain; Int 31.4 62 0.0013 18.5 2.6 14 24-37 2-15 (119)
250 TIGR02219 phage_NlpC_fam putat 31.0 30 0.00064 21.3 1.2 12 24-35 76-87 (134)
251 cd05828 Sortase_D_4 Sortase D 30.8 74 0.0016 19.2 2.9 19 24-43 61-79 (127)
252 PRK05467 Fe(II)-dependent oxyg 30.8 85 0.0019 21.4 3.5 29 22-51 142-173 (226)
253 cd02558 PSRA_1 PSRA_1: Pseudou 30.8 66 0.0014 21.7 3.0 11 24-34 16-26 (246)
254 PRK12288 GTPase RsgA; Reviewed 30.7 1.1E+02 0.0023 22.0 4.1 35 2-36 40-84 (347)
255 smart00306 HintN Hint (Hedgeho 30.4 48 0.001 18.2 1.9 22 15-36 11-33 (100)
256 PF14801 GCD14_N: tRNA methylt 30.2 46 0.00099 18.3 1.7 26 24-49 5-33 (54)
257 TIGR01700 PNPH purine nucleosi 30.1 54 0.0012 22.3 2.4 25 5-36 85-110 (249)
258 COG0298 HypC Hydrogenase matur 30.0 54 0.0012 19.5 2.1 14 21-34 35-48 (82)
259 COG2217 ZntA Cation transport 29.7 43 0.00094 26.6 2.1 16 17-32 263-278 (713)
260 PRK11507 ribosome-associated p 29.7 1.1E+02 0.0025 17.4 3.6 27 24-50 38-68 (70)
261 PRK06788 flagellar motor switc 29.6 97 0.0021 19.3 3.3 26 24-49 54-81 (119)
262 TIGR01000 bacteriocin_acc bact 29.4 97 0.0021 22.6 3.8 17 16-32 66-82 (457)
263 COG0185 RpsS Ribosomal protein 29.3 52 0.0011 19.9 2.0 31 21-51 29-60 (93)
264 PLN02799 Molybdopterin synthas 29.3 61 0.0013 17.9 2.2 15 24-38 66-81 (82)
265 PF08207 EFP_N: Elongation fac 28.9 99 0.0021 16.4 2.9 16 38-53 8-23 (58)
266 KOG2107 Uncharacterized conser 28.6 1.1E+02 0.0024 20.6 3.6 43 5-47 97-142 (179)
267 PRK08433 flagellar motor switc 28.5 1.4E+02 0.0031 18.3 3.9 26 24-49 52-79 (111)
268 COG1430 Uncharacterized conser 28.0 87 0.0019 19.7 2.9 20 18-37 104-123 (126)
269 PRK08666 5'-methylthioadenosin 27.9 63 0.0014 22.0 2.5 25 5-36 78-103 (261)
270 cd06919 Asp_decarbox Aspartate 27.7 35 0.00077 21.3 1.1 15 24-38 77-91 (111)
271 PRK10559 p-hydroxybenzoic acid 27.6 1.2E+02 0.0025 21.1 3.8 27 3-32 44-70 (310)
272 PRK00809 hypothetical protein; 27.6 38 0.00082 21.5 1.3 10 24-33 34-43 (144)
273 TIGR03404 bicupin_oxalic bicup 27.5 1.7E+02 0.0036 21.2 4.7 28 17-44 285-312 (367)
274 PF12124 Nsp3_PL2pro: Coronavi 27.4 72 0.0016 17.8 2.2 25 24-48 31-56 (66)
275 TIGR00223 panD L-aspartate-alp 27.2 37 0.0008 21.6 1.1 15 24-38 78-92 (126)
276 cd06813 PLPDE_III_DSD_D-TA_lik 27.0 79 0.0017 22.6 2.9 36 24-60 342-378 (388)
277 TIGR01697 PNPH-PUNA-XAPA inosi 26.8 74 0.0016 21.5 2.7 25 5-36 85-110 (248)
278 PRK11281 hypothetical protein; 26.8 50 0.0011 27.7 2.1 33 24-56 938-979 (1113)
279 PF11213 DUF3006: Protein of u 26.7 77 0.0017 17.5 2.3 14 20-33 29-42 (71)
280 PTZ00316 profilin; Provisional 26.4 1E+02 0.0023 20.0 3.2 16 38-53 59-74 (150)
281 PRK05449 aspartate alpha-decar 26.3 39 0.00084 21.5 1.1 15 24-38 78-92 (126)
282 cd00565 ThiS ThiaminS ubiquiti 26.2 48 0.001 17.7 1.4 11 24-34 49-59 (65)
283 cd00754 MoaD Ubiquitin domain 26.0 73 0.0016 17.1 2.1 16 23-38 63-79 (80)
284 cd01091 CDC68-like Related to 25.9 51 0.0011 22.2 1.7 35 1-35 194-234 (243)
285 PRK14875 acetoin dehydrogenase 25.9 50 0.0011 22.3 1.7 16 16-31 15-30 (371)
286 cd04719 BAH_Orc1p_animal BAH, 25.8 46 0.001 20.9 1.4 14 22-35 1-14 (128)
287 cd04720 BAH_Orc1p_Yeast BAH, o 25.8 64 0.0014 21.1 2.1 13 23-35 51-63 (179)
288 cd04867 TGS_YchF_C TGS_YchF_C: 25.8 27 0.00058 20.7 0.3 35 24-59 43-81 (83)
289 PHA02951 Hypothetical protein; 25.7 1.2E+02 0.0025 22.4 3.6 34 19-52 145-181 (337)
290 PF04225 OapA: Opacity-associa 25.7 84 0.0018 18.1 2.4 32 24-55 42-78 (85)
291 COG2871 NqrF Na+-transporting 25.6 52 0.0011 24.4 1.8 29 24-52 253-282 (410)
292 PF04943 Pox_F11: Poxvirus F11 25.4 1.3E+02 0.0028 22.4 3.8 36 17-52 135-173 (366)
293 PF00717 Peptidase_S24: Peptid 25.4 31 0.00067 18.0 0.5 12 24-35 24-35 (70)
294 PHA02699 hypothetical protein; 25.3 1E+02 0.0022 23.5 3.2 36 17-52 186-224 (466)
295 cd00604 IPT_CGTD IPT domain (d 25.3 1.4E+02 0.0031 16.9 4.1 35 21-55 7-45 (81)
296 CHL00142 rps17 ribosomal prote 25.2 38 0.00083 19.9 0.9 13 24-36 50-62 (84)
297 PF13375 RnfC_N: RnfC Barrel s 25.1 47 0.001 19.9 1.3 16 18-33 39-54 (101)
298 PF06949 DUF1292: Protein of u 24.9 1.1E+02 0.0024 16.8 2.8 15 40-54 13-27 (76)
299 cd04456 S1_IF1A_like S1_IF1A_l 24.8 43 0.00094 19.2 1.1 15 23-37 37-51 (78)
300 PF00127 Copper-bind: Copper b 24.7 43 0.00094 19.2 1.1 13 23-35 19-31 (99)
301 PRK12281 rplX 50S ribosomal pr 24.6 46 0.001 19.1 1.1 17 22-38 4-22 (76)
302 PRK06488 sulfur carrier protei 24.6 54 0.0012 17.4 1.4 12 24-35 49-60 (65)
303 COG0186 RpsQ Ribosomal protein 24.5 41 0.0009 20.1 0.9 13 23-35 54-66 (87)
304 CHL00050 rps19 ribosomal prote 24.4 98 0.0021 18.5 2.6 32 22-53 30-62 (92)
305 TIGR02466 conserved hypothetic 24.2 83 0.0018 21.0 2.5 22 20-41 161-182 (201)
306 PRK08225 acetyl-CoA carboxylas 24.2 70 0.0015 17.1 1.8 11 51-61 60-70 (70)
307 cd06165 Sortase_A_1 Sortase A 24.2 1.1E+02 0.0024 18.2 2.9 32 24-56 63-94 (127)
308 PF04246 RseC_MucC: Positive r 24.1 46 0.00099 20.3 1.1 13 22-34 49-61 (135)
309 COG4013 Uncharacterized protei 24.1 1.5E+02 0.0032 17.9 3.3 34 24-57 20-57 (91)
310 smart00652 eIF1a eukaryotic tr 24.0 49 0.0011 19.2 1.2 16 23-38 42-57 (83)
311 TIGR01682 moaD molybdopterin c 23.8 84 0.0018 17.3 2.1 16 23-38 63-79 (80)
312 COG1862 YajC Preprotein transl 23.7 1.8E+02 0.0038 17.5 4.4 24 24-47 43-67 (97)
313 COG1188 Ribosome-associated he 23.6 67 0.0015 19.6 1.8 20 16-35 38-59 (100)
314 PF03079 ARD: ARD/ARD' family; 23.6 2.1E+02 0.0046 18.4 4.7 43 6-48 97-142 (157)
315 cd05793 S1_IF1A S1_IF1A: Trans 23.5 51 0.0011 18.8 1.2 16 23-38 37-52 (77)
316 TIGR03309 matur_yqeB selenium- 23.4 2.2E+02 0.0047 20.1 4.5 29 30-62 165-196 (256)
317 smart00110 C1Q Complement comp 23.2 79 0.0017 19.6 2.1 16 21-36 96-111 (135)
318 PRK07440 hypothetical protein; 23.2 92 0.002 17.2 2.2 11 23-33 53-63 (70)
319 PF13989 YejG: YejG-like prote 23.0 76 0.0016 19.7 1.9 20 39-58 70-89 (106)
320 PRK08564 5'-methylthioadenosin 23.0 99 0.0022 21.5 2.8 25 5-36 86-111 (267)
321 PF07591 PT-HINT: Pretoxin HIN 23.0 28 0.0006 21.5 0.0 19 16-35 5-24 (130)
322 PF14453 ThiS-like: ThiS-like 23.0 58 0.0013 17.9 1.3 11 23-33 43-53 (57)
323 PRK04038 rps19p 30S ribosomal 22.9 1.1E+02 0.0025 19.6 2.8 31 23-53 65-96 (134)
324 TIGR01694 MTAP 5'-deoxy-5'-met 22.8 87 0.0019 20.9 2.4 25 5-36 78-103 (241)
325 CHL00141 rpl24 ribosomal prote 22.7 64 0.0014 18.7 1.5 17 22-38 6-24 (83)
326 PRK13264 3-hydroxyanthranilate 22.7 2.4E+02 0.0053 18.8 5.7 15 21-35 76-90 (177)
327 PRK06748 hypothetical protein; 22.6 75 0.0016 18.5 1.8 11 51-61 64-74 (83)
328 cd00986 PDZ_LON_protease PDZ d 22.5 1.2E+02 0.0025 16.3 2.5 22 5-32 11-32 (79)
329 TIGR02971 heterocyst_DevB ABC 22.5 1.2E+02 0.0027 20.6 3.1 15 18-32 25-39 (327)
330 PF11008 DUF2846: Protein of u 22.3 1.8E+02 0.0039 17.2 4.2 21 15-35 55-75 (117)
331 PF10665 Minor_capsid_1: Minor 22.3 99 0.0021 18.9 2.4 19 38-56 80-98 (114)
332 PF02597 ThiS: ThiS family; I 22.3 71 0.0015 17.0 1.6 10 24-33 61-70 (77)
333 PTZ00096 40S ribosomal protein 22.2 1.1E+02 0.0024 19.8 2.7 32 22-53 75-107 (143)
334 PF13806 Rieske_2: Rieske-like 22.2 1.8E+02 0.0039 17.1 4.1 26 34-59 12-39 (104)
335 TIGR02754 sod_Ni_protease nick 22.2 75 0.0016 17.6 1.7 11 24-34 11-21 (90)
336 PRK11165 diaminopimelate decar 22.2 1.7E+02 0.0036 21.3 3.9 12 24-35 363-374 (420)
337 TIGR02657 amicyanin amicyanin. 22.1 77 0.0017 17.6 1.8 14 23-36 13-26 (83)
338 TIGR01843 type_I_hlyD type I s 22.1 1.8E+02 0.0038 20.3 3.9 29 3-31 34-65 (423)
339 PRK11033 zntA zinc/cadmium/mer 22.0 1.6E+02 0.0034 23.2 3.9 22 17-42 294-315 (741)
340 PRK08983 fliN flagellar motor 22.0 1.7E+02 0.0036 18.4 3.4 25 24-48 71-97 (127)
341 PRK06437 hypothetical protein; 22.0 76 0.0016 17.3 1.7 12 24-35 51-62 (67)
342 COG4766 EutQ Ethanolamine util 21.9 2.4E+02 0.0051 18.9 4.2 29 22-50 137-166 (176)
343 PF08605 Rad9_Rad53_bind: Fung 21.9 1.7E+02 0.0037 18.4 3.5 20 16-35 51-70 (131)
344 PF14592 Chondroitinas_B: Chon 21.8 64 0.0014 24.3 1.7 21 24-44 13-35 (425)
345 COG1585 Membrane protein impli 21.8 2.2E+02 0.0047 18.0 3.9 41 3-43 90-137 (140)
346 PF07892 DUF1667: Protein of u 21.8 74 0.0016 18.7 1.7 22 18-40 54-75 (82)
347 COG0853 PanD Aspartate 1-decar 21.7 54 0.0012 20.9 1.1 15 24-38 77-91 (126)
348 TIGR02272 gentisate_1_2 gentis 21.6 1.6E+02 0.0035 21.4 3.7 46 7-55 276-321 (335)
349 PF14627 DUF4453: Domain of un 21.5 1.6E+02 0.0035 18.3 3.2 26 23-53 57-82 (107)
350 PF01557 FAA_hydrolase: Fumary 21.5 44 0.00096 21.7 0.7 27 2-32 174-203 (218)
351 PF03459 TOBE: TOBE domain; I 21.5 55 0.0012 17.0 1.0 11 23-33 45-55 (64)
352 PRK14105 selenophosphate synth 21.5 1.5E+02 0.0032 20.9 3.4 33 4-40 148-180 (345)
353 PF00394 Cu-oxidase: Multicopp 21.4 1.8E+02 0.004 17.9 3.5 37 18-54 57-98 (159)
354 COG0508 AceF Pyruvate/2-oxoglu 21.3 64 0.0014 23.7 1.6 23 8-32 9-31 (404)
355 KOG1805 DNA replication helica 21.2 1.6E+02 0.0035 25.0 3.9 40 19-58 144-186 (1100)
356 PRK06002 fliI flagellum-specif 21.2 2.4E+02 0.0053 21.3 4.6 51 2-55 26-81 (450)
357 PF11604 CusF_Ec: Copper bindi 21.2 59 0.0013 18.0 1.1 13 22-34 40-52 (70)
358 PRK08202 purine nucleoside pho 21.1 1.1E+02 0.0025 21.0 2.7 25 5-36 107-132 (272)
359 cd04709 BAH_MTA BAH, or Bromo 21.1 70 0.0015 20.9 1.6 13 24-36 3-15 (164)
360 PF00364 Biotin_lipoyl: Biotin 21.0 51 0.0011 18.1 0.8 12 20-31 17-28 (74)
361 cd08289 MDR_yhfp_like Yhfp put 20.9 1.1E+02 0.0023 20.2 2.5 12 24-35 76-87 (326)
362 PF00132 Hexapep: Bacterial tr 20.9 54 0.0012 15.0 0.8 28 9-36 4-31 (36)
363 CHL00059 atpA ATP synthase CF1 20.8 3.1E+02 0.0067 21.0 5.1 47 2-51 6-53 (485)
364 PF12961 DUF3850: Domain of Un 20.7 90 0.0019 17.9 1.8 14 24-37 28-41 (72)
365 smart00835 Cupin_1 Cupin. This 20.6 2.1E+02 0.0046 17.3 5.2 36 19-54 73-111 (146)
366 cd06821 PLPDE_III_D-TA Type II 20.6 1.9E+02 0.004 20.2 3.8 36 24-60 315-351 (361)
367 cd04477 RPA1N RPA1N: A subfami 20.6 1.2E+02 0.0025 17.9 2.4 32 24-57 65-96 (97)
368 COG3350 Uncharacterized conser 20.6 90 0.0019 17.1 1.7 16 39-54 19-34 (53)
369 PRK06944 sulfur carrier protei 20.6 90 0.002 16.3 1.8 11 24-34 49-59 (65)
370 PRK11465 putative mechanosensi 20.5 1.7E+02 0.0036 23.7 3.8 35 24-58 573-616 (741)
371 PF03336 Pox_C4_C10: Poxvirus 20.5 3.6E+02 0.0078 19.9 5.8 36 25-61 136-183 (339)
372 KOG2241 tRNA-binding protein [ 20.4 66 0.0014 22.7 1.4 38 2-40 165-204 (255)
373 TIGR01025 rpsS_arch ribosomal 20.4 1.3E+02 0.0027 19.4 2.6 31 23-53 66-97 (135)
374 TIGR03536 DapD_gpp 2,3,4,5-tet 20.3 1E+02 0.0022 22.8 2.4 37 5-43 249-289 (341)
375 PRK15030 multidrug efflux syst 20.3 3E+02 0.0066 19.6 4.8 24 20-43 348-375 (397)
376 PRK00807 50S ribosomal protein 20.3 1.6E+02 0.0034 15.6 2.9 20 34-53 13-32 (52)
377 TIGR01050 rpsS_bact ribosomal 20.2 1.2E+02 0.0026 18.1 2.4 31 23-53 31-62 (92)
378 TIGR01762 chlorin-enz chlorina 20.2 88 0.0019 21.7 2.0 17 19-35 207-223 (288)
379 smart00357 CSP Cold shock prot 20.1 67 0.0014 16.1 1.1 12 23-34 35-46 (64)
No 1
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.7e-26 Score=138.19 Aligned_cols=62 Identities=44% Similarity=0.804 Sum_probs=59.7
Q ss_pred CceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEecc
Q 045997 1 LISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLHD 62 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i~~ 62 (63)
.++|+|+|||+|+.+++|+.+|++||+||+|+|++|+|+++++||++|++++++||||++++
T Consensus 35 ~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dgeeylil~e~DILAiv~~ 96 (96)
T COG0234 35 PQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGEEYLILSESDILAIVEK 96 (96)
T ss_pred CcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCEEEEEechHHeeEEecC
Confidence 37899999999999999999999999999999999999999999999999999999999874
No 2
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=99.92 E-value=3.8e-25 Score=133.38 Aligned_cols=61 Identities=43% Similarity=0.736 Sum_probs=58.9
Q ss_pred CceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEec
Q 045997 1 LISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLH 61 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i~ 61 (63)
+++|+|+|||||+++++|++.|++||+||+|+|++|+|++|++++++|+++|++||||+++
T Consensus 35 ~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~~y~iv~~~DIlavi~ 95 (95)
T PRK00364 35 PQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGEEYLILRESDILAIVE 95 (95)
T ss_pred cceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEECCEEEEEEEHHHEEEEeC
Confidence 3689999999999999999999999999999999999999999999999999999999985
No 3
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=99.91 E-value=3.4e-24 Score=128.77 Aligned_cols=60 Identities=50% Similarity=0.872 Sum_probs=58.0
Q ss_pred CceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEe
Q 045997 1 LISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 60 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i 60 (63)
+++|+|+|||||+.+++|++.|++||+||+|+|++|+|++|++++++|+++|++||||++
T Consensus 34 ~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~y~i~~~~DIla~i 93 (93)
T cd00320 34 PQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEEYLILRESDILAVI 93 (93)
T ss_pred ceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEEEEEEEHHHEEEEC
Confidence 368999999999999999999999999999999999999999999999999999999985
No 4
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=99.89 E-value=4.8e-23 Score=123.26 Aligned_cols=59 Identities=47% Similarity=0.852 Sum_probs=55.6
Q ss_pred ceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEe
Q 045997 2 ISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 60 (63)
Q Consensus 2 ~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i 60 (63)
++|+|+|||||+.+++|+.+|++|++||+|+|++|+|++++++|++|+++|++||||++
T Consensus 35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~~~~~~~~dIlavi 93 (93)
T PF00166_consen 35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFDGEKYLIVREDDILAVI 93 (93)
T ss_dssp EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEETTEEEEEEEGGGEEEEE
T ss_pred ceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEECCEEEEEEEHHHeEEEC
Confidence 68999999999999999999999999999999999999999999999999999999986
No 5
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=99.88 E-value=9.6e-23 Score=124.53 Aligned_cols=56 Identities=46% Similarity=0.836 Sum_probs=52.0
Q ss_pred CceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEec
Q 045997 1 LISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLH 61 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i~ 61 (63)
.++|+|+|||+|+.+ .|++||+||+|+|++|+|++|+++|++|++++++||||+++
T Consensus 44 p~~g~VvAVG~G~~~-----~~~~Vk~GD~Vl~~~y~Gtevk~dg~ey~i~~e~DILavi~ 99 (100)
T PTZ00414 44 VNEGTVVAVAAATKD-----WTPTVKVGDTVLLPEFGGSSVKVEGEEFFLYNEDSLLGVLQ 99 (100)
T ss_pred CceeEEEEECCCCcc-----ccceecCCCEEEEcCCCCcEEEECCEEEEEEEhHHEEEEec
Confidence 368999999999754 38999999999999999999999999999999999999986
No 6
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=99.88 E-value=1.5e-22 Score=121.74 Aligned_cols=57 Identities=30% Similarity=0.542 Sum_probs=52.6
Q ss_pred CceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEecc
Q 045997 1 LISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLHD 62 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i~~ 62 (63)
.++|+|+|||||.. ..|++||+||+|+|++|+|++|+++|++|+++|++||||++++
T Consensus 35 ~~~G~VvavG~g~~-----~~~~~Vk~GD~Vl~~~y~g~ev~~~~~~y~iv~e~DILa~i~~ 91 (91)
T PRK14533 35 PMKAEVVAVGKLDD-----EEDFDIKVGDKVIFSKYAGTEIKIDDEDYIIIDVNDILAKIEE 91 (91)
T ss_pred cceEEEEEECCCCc-----cccccccCCCEEEEccCCCeEEEECCEEEEEEEhHhEEEEeeC
Confidence 36899999999862 4689999999999999999999999999999999999999985
No 7
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.5e-20 Score=114.26 Aligned_cols=60 Identities=63% Similarity=1.096 Sum_probs=55.6
Q ss_pred CceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECC-EEEEEEecCCEEEEe
Q 045997 1 LISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGD-KKYHLYEDESILGTL 60 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g-~~y~i~~e~DIla~i 60 (63)
+++|+|+|||||.+++.|+.+|.+||+||+|+||+|+|++|++++ ++|+++|.+|+|+.+
T Consensus 43 ~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt~V~l~~~~~~~~fr~e~~l~~~ 103 (104)
T KOG1641|consen 43 LLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGTKVKLGDEDEYHLFRDEDDLLAI 103 (104)
T ss_pred cceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCcEEeccCCceeEEecchhhhhhh
Confidence 367999999999999999999999999999999999999999984 699999999988865
No 8
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=94.47 E-value=0.041 Score=32.31 Aligned_cols=24 Identities=50% Similarity=0.793 Sum_probs=19.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+++||+|....
T Consensus 40 ~G~V~~vG~~v~---------~~~~Gd~V~~~~ 63 (109)
T PF08240_consen 40 VGVVVAVGPGVT---------DFKVGDRVVVSP 63 (109)
T ss_dssp EEEEEEESTTTT---------SSGTT-EEEEES
T ss_pred eeeeeeeccccc---------cccccceeeeec
Confidence 599999999763 499999999844
No 9
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=93.78 E-value=0.055 Score=39.65 Aligned_cols=22 Identities=59% Similarity=0.833 Sum_probs=19.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|.|.+||+|.. +||+||+|+.
T Consensus 64 AGiVe~VG~gVt---------~vkpGDhVI~ 85 (366)
T COG1062 64 AGIVEAVGEGVT---------SVKPGDHVIL 85 (366)
T ss_pred ccEEEEecCCcc---------ccCCCCEEEE
Confidence 489999999975 7999999984
No 10
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=92.87 E-value=0.097 Score=37.68 Aligned_cols=24 Identities=46% Similarity=0.596 Sum_probs=20.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|.|+|||.|.. ..++||+|.|-.
T Consensus 73 aGvVvAvG~gvt---------drkvGDrVayl~ 96 (336)
T KOG1197|consen 73 AGVVVAVGEGVT---------DRKVGDRVAYLN 96 (336)
T ss_pred ceEEEEecCCcc---------ccccccEEEEec
Confidence 589999999975 489999999955
No 11
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=92.58 E-value=0.3 Score=35.57 Aligned_cols=29 Identities=38% Similarity=0.501 Sum_probs=21.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCC-ceE
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYG-GAE 40 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~-g~e 40 (63)
.|+||+||...+ .+|+||+|+-..-+ |++
T Consensus 86 v~eVv~vGs~vk---------gfk~Gd~VIp~~a~lGtW 115 (354)
T KOG0025|consen 86 VGEVVAVGSNVK---------GFKPGDWVIPLSANLGTW 115 (354)
T ss_pred eEEEEEecCCcC---------ccCCCCeEeecCCCCccc
Confidence 589999998542 39999999976533 554
No 12
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.74 E-value=0.33 Score=32.49 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=20.2
Q ss_pred eEEEEEECCCeeC-CCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARD-VNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~-~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++... ..| -.+|+||+|....
T Consensus 7 ~G~V~~vG~~v~~~~~~----~~~~~GdrV~~~~ 36 (280)
T TIGR03366 7 VGEVVALRGGFTPADDG----VPLRLGQRVVWSV 36 (280)
T ss_pred ceEEEEeCCCccccccC----CCCCCCCEEEEcC
Confidence 5999999997631 111 1489999998743
No 13
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=90.58 E-value=1.2 Score=30.32 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=28.7
Q ss_pred CCCeEEeeeccCCCEEEeCCCC-------ceEEEECCEEEEEEecCC
Q 045997 16 VNGKFIPVSVKEGDTVLLPEYG-------GAEVKLGDKKYHLYEDES 55 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~Vl~~~y~-------g~ev~~~g~~y~i~~e~D 55 (63)
.++..+|+-+++||+++|..++ |-.|..+-+.|-+....+
T Consensus 87 ~~~syR~~GL~aGeT~iY~~eG~~i~Lteg~~Ie~~ck~~~v~a~~~ 133 (203)
T COG4384 87 QHGSYRITGLKAGETVIYNHEGAKIVLTEGGIIEADCKTLTVNAATG 133 (203)
T ss_pred cCCccccccccCCceEEEeccCcEEEEccCcEEEEeccEEEEecCCc
Confidence 5778889999999999998765 344555566666554444
No 14
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=90.06 E-value=0.55 Score=32.99 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=27.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC-C--CceEEEECCEEEEEEecCCE
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE-Y--GGAEVKLGDKKYHLYEDESI 56 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~-y--~g~ev~~~g~~y~i~~e~DI 56 (63)
.|+|+|||++.. ..++||+|.+.. . .|. -.+|..+.++.+
T Consensus 66 aG~V~avG~~V~---------~~~~GdrV~~~~~~~~~G~-----~AEy~~v~a~~~ 108 (326)
T COG0604 66 AGVVVAVGSGVT---------GFKVGDRVAALGGVGRDGG-----YAEYVVVPADWL 108 (326)
T ss_pred EEEEEEeCCCCC---------CcCCCCEEEEccCCCCCCc-----ceeEEEecHHHc
Confidence 599999999864 249999999984 2 221 246666665443
No 15
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.37 E-value=0.51 Score=33.64 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=19.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|...
T Consensus 70 ~G~V~~vG~~V~---------~~~vGdrV~~~ 92 (393)
T TIGR02819 70 TGEVIEKGRDVE---------FIKIGDIVSVP 92 (393)
T ss_pred EEEEEEEcCccc---------cccCCCEEEEe
Confidence 699999999753 48999999874
No 16
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.77 E-value=0.57 Score=32.23 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++ . .+++||+|+..
T Consensus 66 ~G~V~~vG~~-~---------~~~vGdrV~~~ 87 (355)
T cd08230 66 LGVVEEVGDG-S---------GLSPGDLVVPT 87 (355)
T ss_pred ceEEEEecCC-C---------CCCCCCEEEec
Confidence 5899999986 3 48999999863
No 17
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.33 E-value=0.6 Score=34.33 Aligned_cols=21 Identities=48% Similarity=0.778 Sum_probs=18.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEE
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVL 32 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl 32 (63)
.|.|.+||+|.. .+|+||+|+
T Consensus 70 aGIVESvGegV~---------~vk~GD~Vi 90 (375)
T KOG0022|consen 70 AGIVESVGEGVT---------TVKPGDHVI 90 (375)
T ss_pred eeEEEEecCCcc---------ccCCCCEEe
Confidence 589999999874 699999998
No 18
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=85.56 E-value=0.95 Score=30.79 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=26.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCC-ceEE-EECC--EEEEEEecCCEE
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYG-GAEV-KLGD--KKYHLYEDESIL 57 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~-g~ev-~~~g--~~y~i~~e~DIl 57 (63)
.|+|+++|++. .+++||+|+..... .... ...| .+|++++++.++
T Consensus 67 ~G~V~~vG~~v----------~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~ 115 (308)
T TIGR01202 67 VGRVVEAGPDT----------GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVC 115 (308)
T ss_pred EEEEEEecCCC----------CCCCCCEEEEeCccccccccccCCcccceEEcCHHHce
Confidence 58999999863 37999999963210 0000 0012 477777766543
No 19
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=84.82 E-value=0.88 Score=32.98 Aligned_cols=22 Identities=45% Similarity=0.666 Sum_probs=19.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|++||++.. .+|+||+|-.
T Consensus 66 vG~V~~vG~~V~---------~~k~GDrVgV 87 (339)
T COG1064 66 VGTVVEVGEGVT---------GLKVGDRVGV 87 (339)
T ss_pred EEEEEEecCCCc---------cCCCCCEEEe
Confidence 599999999864 5999999998
No 20
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=83.83 E-value=1.2 Score=30.98 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=18.0
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 75 ~G~V~~vG~~v~---------~~~vGdrV~~ 96 (360)
T PLN02586 75 VGIVTKLGKNVK---------KFKEGDRVGV 96 (360)
T ss_pred eEEEEEECCCCC---------ccCCCCEEEE
Confidence 589999998752 4899999984
No 21
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=82.74 E-value=4.2 Score=28.00 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=16.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|.+ .+++||+|.+..
T Consensus 67 ~G~V~~~g~~-----------~~~vGdrV~~~~ 88 (341)
T cd08237 67 IGVVVSDPTG-----------TYKVGTKVVMVP 88 (341)
T ss_pred EEEEEeeCCC-----------ccCCCCEEEECC
Confidence 5888887752 389999998753
No 22
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=82.68 E-value=1.5 Score=30.13 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 65 ~G~V~~vG~~v~---------~~~~Gd~V~~ 86 (329)
T TIGR02822 65 VGEVAGRGADAG---------GFAVGDRVGI 86 (329)
T ss_pred EEEEEEECCCCc---------ccCCCCEEEE
Confidence 689999999752 4899999985
No 23
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=82.16 E-value=1.5 Score=29.93 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=18.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 62 ~G~V~~vG~~v~---------~~~vGd~V~~~ 84 (347)
T PRK10309 62 SGYVEAVGSGVD---------DLHPGDAVACV 84 (347)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEEC
Confidence 589999998642 48999999864
No 24
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=81.92 E-value=1.6 Score=30.31 Aligned_cols=22 Identities=45% Similarity=0.767 Sum_probs=18.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 70 ~G~V~~vG~~v~---------~~~~GdrV~~ 91 (371)
T cd08281 70 AGVVVEVGEGVT---------DLEVGDHVVL 91 (371)
T ss_pred eeEEEEeCCCCC---------cCCCCCEEEE
Confidence 589999998652 4899999986
No 25
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=81.45 E-value=4.7 Score=25.16 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=23.3
Q ss_pred EeeeccCCCEEEeCC-CCceEEEECC-EEEEEE
Q 045997 21 IPVSVKEGDTVLLPE-YGGAEVKLGD-KKYHLY 51 (63)
Q Consensus 21 ~p~~vk~GD~Vl~~~-y~g~ev~~~g-~~y~i~ 51 (63)
.|..+++||.++|++ +.|+.-..+. .+++++
T Consensus 82 e~v~~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~ 114 (116)
T COG3450 82 EPVEVRAGDSFVFPAGFKGTWEVLETVRKHYVI 114 (116)
T ss_pred eEEEEcCCCEEEECCCCeEEEEEeeeeEEEEEE
Confidence 578999999999998 8898666554 344444
No 26
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=80.83 E-value=1.8 Score=29.98 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=18.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 65 ~G~V~~vG~~v~---------~~~~GdrV~~~ 87 (369)
T cd08301 65 AGIVESVGEGVT---------DLKPGDHVLPV 87 (369)
T ss_pred ceEEEEeCCCCC---------ccccCCEEEEc
Confidence 589999998652 48999999863
No 27
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=80.81 E-value=1.9 Score=30.50 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.0
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|..
T Consensus 69 aG~Vv~vG~~v~---------~~~vGdrV~~ 90 (375)
T PLN02178 69 VGIATKVGKNVT---------KFKEGDRVGV 90 (375)
T ss_pred eEEEEEECCCCC---------ccCCCCEEEE
Confidence 589999998752 4899999974
No 28
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=80.69 E-value=1.5 Score=29.10 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=23.8
Q ss_pred eeccCCCEEEeCCCCceEEE------ECC--EEEEEEe--cCCEEE
Q 045997 23 VSVKEGDTVLLPEYGGAEVK------LGD--KKYHLYE--DESILG 58 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~g~ev~------~~g--~~y~i~~--e~DIla 58 (63)
+.+|+||+|+||.++--.|+ +.| .+|+++. .+|...
T Consensus 3 ~~Fk~Gd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v 48 (166)
T COG1329 3 MAFKIGDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQSDMTV 48 (166)
T ss_pred ccccCCCEEEecCCCceeeehhhhHhhcCceeEEEEEEEcCCCcEE
Confidence 57899999999998854443 334 4676654 444443
No 29
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=79.99 E-value=11 Score=24.63 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=18.8
Q ss_pred CCCeEEeeeccCCCEEEeCCCCceEEEE
Q 045997 16 VNGKFIPVSVKEGDTVLLPEYGGAEVKL 43 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~Vl~~~y~g~ev~~ 43 (63)
+++..+|..+++|+.++|...+ ..|.+
T Consensus 66 ~d~~yR~~~L~~GEvalY~~~G-~~I~L 92 (162)
T PF06890_consen 66 EDRRYRPKGLKPGEVALYDDEG-QKIHL 92 (162)
T ss_pred CCccccccCCCCCcEEEEcCCC-CEEEE
Confidence 4555667779999999998754 44433
No 30
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=79.95 E-value=2.1 Score=30.37 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=18.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++... .+++||+|+..
T Consensus 71 ~G~V~~vG~~v~~--------~~~vGdrV~~~ 94 (410)
T cd08238 71 AGTILKVGKKWQG--------KYKPGQRFVIQ 94 (410)
T ss_pred EEEEEEeCCCccC--------CCCCCCEEEEc
Confidence 5899999986521 38999999874
No 31
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=79.57 E-value=2.3 Score=29.65 Aligned_cols=23 Identities=52% Similarity=0.652 Sum_probs=18.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|...
T Consensus 64 ~G~V~~vG~~v~---------~~~~GdrV~~~ 86 (368)
T TIGR02818 64 AGIVEAVGEGVT---------SVKVGDHVIPL 86 (368)
T ss_pred EEEEEEECCCCc---------cCCCCCEEEEc
Confidence 589999998652 58999999864
No 32
>PLN02827 Alcohol dehydrogenase-like
Probab=79.42 E-value=1.9 Score=30.32 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=18.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 72 ~G~V~~vG~~v~---------~~~~GdrV~~~ 94 (378)
T PLN02827 72 SGIVESIGEGVT---------EFEKGDHVLTV 94 (378)
T ss_pred eEEEEEcCCCCc---------ccCCCCEEEEe
Confidence 589999998753 48999999864
No 33
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=79.02 E-value=2.3 Score=28.75 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=18.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+.-
T Consensus 77 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 99 (345)
T cd08293 77 GGVGVVEESKHQ---------KFAVGDIVTSF 99 (345)
T ss_pred eEEEEEeccCCC---------CCCCCCEEEec
Confidence 589999998642 48999999863
No 34
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=78.69 E-value=2.3 Score=29.47 Aligned_cols=23 Identities=48% Similarity=0.654 Sum_probs=18.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 65 ~G~V~~vG~~v~---------~~~vGdrV~~~ 87 (368)
T cd08300 65 AGIVESVGEGVT---------SVKPGDHVIPL 87 (368)
T ss_pred eEEEEEeCCCCc---------cCCCCCEEEEc
Confidence 589999998652 48999999864
No 35
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=78.65 E-value=2.5 Score=28.60 Aligned_cols=24 Identities=46% Similarity=0.783 Sum_probs=18.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+++||+|+...
T Consensus 63 ~G~V~~vG~~v~---------~~~~Gd~V~~~~ 86 (339)
T cd08239 63 AGVVVAVGPGVT---------HFRVGDRVMVYH 86 (339)
T ss_pred eEEEEEECCCCc---------cCCCCCEEEECC
Confidence 589999998642 489999998643
No 36
>PLN02740 Alcohol dehydrogenase-like
Probab=78.62 E-value=2.3 Score=29.81 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=18.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 74 ~G~V~~vG~~v~---------~~~vGdrV~~~ 96 (381)
T PLN02740 74 AGIVESVGEGVE---------DLKAGDHVIPI 96 (381)
T ss_pred eEEEEEeCCCCC---------cCCCCCEEEec
Confidence 589999998642 48999999864
No 37
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=77.56 E-value=6.6 Score=25.79 Aligned_cols=24 Identities=46% Similarity=0.685 Sum_probs=18.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. ..++||+|+.-.
T Consensus 60 ~G~V~~vG~~v~---------~~~~Gd~V~~~~ 83 (312)
T cd08269 60 WGRVVALGPGVR---------GLAVGDRVAGLS 83 (312)
T ss_pred EEEEEEECCCCc---------CCCCCCEEEEec
Confidence 588999998542 478999999743
No 38
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=77.16 E-value=6.1 Score=26.81 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=15.6
Q ss_pred eCCCCeEEee-eccCCCEEEeCCCCc
Q 045997 14 RDVNGKFIPV-SVKEGDTVLLPEYGG 38 (63)
Q Consensus 14 ~~~~G~~~p~-~vk~GD~Vl~~~y~g 38 (63)
..++|..++| ++++||+|+-.+-.|
T Consensus 20 ~~~~G~~k~m~~L~iGD~Vla~d~~G 45 (217)
T PF01079_consen 20 TLEDGGRKRMSDLKIGDRVLAVDSDG 45 (217)
T ss_dssp EBTTS-EEEGGG--TT-EEEEE-TTS
T ss_pred EeCCCCEeEHHHCCCCCEEEEecCCC
Confidence 3478888888 999999999877444
No 39
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=77.10 E-value=2.9 Score=28.83 Aligned_cols=22 Identities=50% Similarity=0.720 Sum_probs=18.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|..
T Consensus 63 ~G~V~~vG~~v~---------~~~~GdrV~~ 84 (358)
T TIGR03451 63 AGVVEAVGEGVT---------DVAPGDYVVL 84 (358)
T ss_pred EEEEEEeCCCCc---------ccCCCCEEEE
Confidence 589999998652 4899999986
No 40
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=76.98 E-value=2.7 Score=29.10 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=18.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 64 ~G~V~~vG~~v~---------~~~~GdrV~~~ 86 (365)
T cd08277 64 AGIVESVGEGVT---------NLKPGDKVIPL 86 (365)
T ss_pred eEEEEeeCCCCc---------cCCCCCEEEEC
Confidence 589999998653 48899999863
No 41
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=76.93 E-value=3 Score=28.94 Aligned_cols=22 Identities=36% Similarity=0.515 Sum_probs=17.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|++
T Consensus 72 ~G~Vv~vG~~v~---------~~~~Gd~V~~ 93 (357)
T PLN02514 72 VGEVVEVGSDVS---------KFTVGDIVGV 93 (357)
T ss_pred eEEEEEECCCcc---------cccCCCEEEE
Confidence 589999998652 4899999975
No 42
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=76.51 E-value=7.3 Score=26.74 Aligned_cols=45 Identities=29% Similarity=0.485 Sum_probs=32.8
Q ss_pred EEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECC---EEEEEEec
Q 045997 7 VAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGD---KKYHLYED 53 (63)
Q Consensus 7 vAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g---~~y~i~~e 53 (63)
+==|.|....+|+ ..+|++||.+.++.|.-+.+.--| -+|++.++
T Consensus 206 iL~G~G~~~~~g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd 253 (260)
T TIGR03214 206 VLEGKGVYNLDNN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKD 253 (260)
T ss_pred EEeceEEEEECCE--EEEecCCCEEEECCCCCEEEEecCCCcEEEEEEcc
Confidence 3446676666664 457999999999999999887744 26776654
No 43
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=75.90 E-value=9.5 Score=20.84 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=14.5
Q ss_pred EeCCCCceEEEECCEEEEEEecCCEEEEe
Q 045997 32 LLPEYGGAEVKLGDKKYHLYEDESILGTL 60 (63)
Q Consensus 32 l~~~y~g~ev~~~g~~y~i~~e~DIla~i 60 (63)
+.++.+|+=.++.-++--.++..++|+.+
T Consensus 42 I~a~~~G~V~~i~v~~G~~V~~G~~l~~i 70 (71)
T PRK05889 42 VLAEVAGTVSKVSVSVGDVIQAGDLIAVI 70 (71)
T ss_pred EeCCCCEEEEEEEeCCCCEECCCCEEEEE
Confidence 44566665333321111235677777765
No 44
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.78 E-value=1.2 Score=32.61 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=19.9
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|.|..||++.. .+|+||+|.+..
T Consensus 70 sGiV~evG~~Vk---------~LkVGDrVaiEp 93 (354)
T KOG0024|consen 70 SGIVEEVGDEVK---------HLKVGDRVAIEP 93 (354)
T ss_pred ccchhhhccccc---------ccccCCeEEecC
Confidence 588999999764 699999999754
No 45
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=75.71 E-value=4.4 Score=27.44 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=17.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|.|+++|++.. .+++||+|+.
T Consensus 63 ~G~V~~~G~~~~---------~~~~Gd~V~~ 84 (345)
T cd08260 63 AGVVVEVGEDVS---------RWRVGDRVTV 84 (345)
T ss_pred eEEEEEECCCCc---------cCCCCCEEEE
Confidence 589999998642 4899999986
No 46
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=75.05 E-value=3.5 Score=27.54 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=18.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 63 ~G~v~~vG~~v~---------~~~~Gd~V~~~ 85 (325)
T cd08264 63 AGVVEEVGDHVK---------GVKKGDRVVVY 85 (325)
T ss_pred eEEEEEECCCCC---------CCCCCCEEEEC
Confidence 589999998652 48999999854
No 47
>PRK10083 putative oxidoreductase; Provisional
Probab=74.69 E-value=3.6 Score=27.71 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=17.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 62 ~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (339)
T PRK10083 62 FGVIDAVGEGVD---------AARIGERVAV 83 (339)
T ss_pred EEEEEEECCCCc---------cCCCCCEEEE
Confidence 589999998642 4899999985
No 48
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=74.34 E-value=3.5 Score=28.08 Aligned_cols=22 Identities=50% Similarity=0.768 Sum_probs=17.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 73 ~G~V~~vG~~v~---------~~~~Gd~V~~ 94 (351)
T cd08233 73 SGVVVEVGSGVT---------GFKVGDRVVV 94 (351)
T ss_pred eEEEEEeCCCCC---------CCCCCCEEEE
Confidence 589999998642 4899999986
No 49
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=74.23 E-value=3.7 Score=27.88 Aligned_cols=23 Identities=43% Similarity=0.832 Sum_probs=18.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 64 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 86 (340)
T TIGR00692 64 AGEVVGIGPGVE---------GIKVGDYVSVE 86 (340)
T ss_pred EEEEEEECCCCC---------cCCCCCEEEEC
Confidence 589999998642 48999999874
No 50
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=74.21 E-value=3.2 Score=24.73 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=15.2
Q ss_pred eccCCCEEEeCCCCceEEEECCEEEEEE
Q 045997 24 SVKEGDTVLLPEYGGAEVKLGDKKYHLY 51 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~~g~~y~i~ 51 (63)
.+|+||+|+.-+. -+|+.|+++
T Consensus 76 ~Lk~GD~V~ll~~------~~gQ~yiVl 97 (100)
T PF10844_consen 76 GLKVGDKVLLLRV------QGGQKYIVL 97 (100)
T ss_pred CCcCCCEEEEEEe------cCCCEEEEE
Confidence 6799999987551 245677665
No 51
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=73.46 E-value=4.2 Score=27.23 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=18.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 67 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 89 (336)
T TIGR02817 67 AGVVVAVGDEVT---------LFKPGDEVWYA 89 (336)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 589999998642 47899999864
No 52
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=72.43 E-value=4.4 Score=27.23 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=17.9
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 63 ~G~V~~vG~~v~---------~~~~Gd~V~~ 84 (347)
T cd05278 63 VGEVVEVGSDVK---------RLKPGDRVSV 84 (347)
T ss_pred EEEEEEECCCcc---------ccCCCCEEEe
Confidence 589999998642 4899999986
No 53
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=71.92 E-value=4.7 Score=27.17 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=18.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++... .+++||+|+..
T Consensus 69 ~G~V~~vG~~v~~--------~~~vGd~V~~~ 92 (324)
T cd08291 69 SGTVVAAGGGPLA--------QSLIGKRVAFL 92 (324)
T ss_pred EEEEEEECCCccc--------cCCCCCEEEec
Confidence 5899999986521 27899999863
No 54
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.64 E-value=4.5 Score=27.31 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=17.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 62 ~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (345)
T cd08287 62 VGVVEEVGSEVT---------SVKPGDFVIA 83 (345)
T ss_pred EEEEEEeCCCCC---------ccCCCCEEEe
Confidence 589999998642 4789999985
No 55
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=71.50 E-value=4.6 Score=27.96 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=17.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 64 ~G~V~~vG~~v~---------~~~~Gd~V~~ 85 (365)
T cd08278 64 AGVVEAVGSAVT---------GLKPGDHVVL 85 (365)
T ss_pred eEEEEEeCCCcc---------cCCCCCEEEE
Confidence 589999998642 4899999984
No 56
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=71.22 E-value=10 Score=26.00 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=26.9
Q ss_pred CCCeEEeeeccCCCEEEeCCCCce-EEEECCEEEEEE
Q 045997 16 VNGKFIPVSVKEGDTVLLPEYGGA-EVKLGDKKYHLY 51 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~Vl~~~y~g~-ev~~~g~~y~i~ 51 (63)
.+|+.+...+++||.++.+++-|. .+...++.+.++
T Consensus 121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~ 157 (209)
T COG2140 121 PEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFL 157 (209)
T ss_pred CCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEE
Confidence 568889999999999999997765 444455555543
No 57
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=71.03 E-value=4.8 Score=27.10 Aligned_cols=22 Identities=41% Similarity=0.777 Sum_probs=17.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 62 ~G~V~~~G~~v~---------~~~~Gd~V~~ 83 (343)
T cd08235 62 AGEIVEVGDGVT---------GFKVGDRVFV 83 (343)
T ss_pred EEEEEeeCCCCC---------CCCCCCEEEE
Confidence 589999998642 4889999995
No 58
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=70.94 E-value=11 Score=25.33 Aligned_cols=22 Identities=50% Similarity=0.818 Sum_probs=17.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 62 ~G~V~~~G~~v~---------~~~~Gd~V~~ 83 (337)
T cd08261 62 SGEVVEVGEGVA---------GLKVGDRVVV 83 (337)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEE
Confidence 588999997542 4899999996
No 59
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=70.76 E-value=8.7 Score=25.01 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=17.9
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|++.. ..++||+|+..
T Consensus 29 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 51 (277)
T cd08255 29 VGRVVEVGSGVT---------GFKPGDRVFCF 51 (277)
T ss_pred eEEEEEeCCCCC---------CCCCCCEEEec
Confidence 589999997542 47899999875
No 60
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=70.60 E-value=5.7 Score=25.18 Aligned_cols=24 Identities=50% Similarity=0.796 Sum_probs=18.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+++||+|+...
T Consensus 38 ~G~v~~~G~~v~---------~~~~Gd~V~~~~ 61 (271)
T cd05188 38 AGVVVEVGPGVT---------GVKVGDRVVVLP 61 (271)
T ss_pred EEEEEEECCCCC---------cCCCCCEEEEcC
Confidence 588999997432 489999999754
No 61
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=70.58 E-value=5.3 Score=26.44 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=18.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+++||+|+...
T Consensus 67 ~G~V~~~G~~v~---------~~~~Gd~V~~~~ 90 (324)
T cd08292 67 VGVVDAVGEGVK---------GLQVGQRVAVAP 90 (324)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEecc
Confidence 589999998542 478999998753
No 62
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=70.14 E-value=5.2 Score=26.95 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=18.0
Q ss_pred eEEEEEECCCeeCCCCeEEeee-ccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVS-VKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~-vk~GD~Vl~~ 34 (63)
.|+|+++|++.. . +++||+|+..
T Consensus 72 ~G~V~~vG~~v~---------~~~~~Gd~V~~~ 95 (341)
T cd08262 72 CGEVVDYGPGTE---------RKLKVGTRVTSL 95 (341)
T ss_pred eEEEEEeCCCCc---------CCCCCCCEEEec
Confidence 589999997642 3 7899999964
No 63
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=69.83 E-value=7.3 Score=24.92 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=26.6
Q ss_pred CeeCCCCeEEeeeccCCCEEEeCCCCceEEE
Q 045997 12 GARDVNGKFIPVSVKEGDTVLLPEYGGAEVK 42 (63)
Q Consensus 12 G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~ 42 (63)
|+.+++|+..+-.++.|+..+|-+-.++.+.
T Consensus 82 GKTD~~Gki~Wk~~~kG~Y~v~l~n~e~~~~ 112 (131)
T PF10794_consen 82 GKTDEEGKIIWKNGRKGKYIVFLPNGETQET 112 (131)
T ss_pred cccCCCCcEEEecCCcceEEEEEcCCCceeE
Confidence 4688999999999999999999887776655
No 64
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=69.76 E-value=5.7 Score=26.87 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=18.0
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 63 ~G~V~~~G~~v~---------~~~~Gd~V~~~ 85 (345)
T cd08286 63 VGVVEEVGSAVT---------NFKVGDRVLIS 85 (345)
T ss_pred eEEEEEeccCcc---------ccCCCCEEEEC
Confidence 589999998642 47999999863
No 65
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.55 E-value=5.7 Score=27.06 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=18.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 62 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 84 (351)
T cd08285 62 VGVVEEVGSEVK---------DFKPGDRVIVP 84 (351)
T ss_pred EEEEEEecCCcC---------ccCCCCEEEEc
Confidence 589999998642 48999999963
No 66
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=69.26 E-value=5.6 Score=26.73 Aligned_cols=23 Identities=43% Similarity=0.708 Sum_probs=17.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+.-
T Consensus 66 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 88 (340)
T cd05284 66 AGWVEEVGSGVD---------GLKEGDPVVVH 88 (340)
T ss_pred eEEEEEeCCCCC---------cCcCCCEEEEc
Confidence 588899987542 48999999853
No 67
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=69.22 E-value=5.7 Score=26.74 Aligned_cols=22 Identities=50% Similarity=0.818 Sum_probs=17.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|.|+++|++.. ..++||+|+.
T Consensus 62 ~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (344)
T cd08284 62 VGEVVEVGPEVR---------TLKVGDRVVS 83 (344)
T ss_pred EEEEEeeCCCcc---------ccCCCCEEEE
Confidence 589999997642 5899999986
No 68
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=68.63 E-value=6 Score=26.69 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=18.0
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 61 ~G~V~~~g~~v~---------~~~~Gd~V~~~ 83 (343)
T cd08236 61 SGTVEEVGSGVD---------DLAVGDRVAVN 83 (343)
T ss_pred EEEEEEECCCCC---------cCCCCCEEEEc
Confidence 589999998542 48999999863
No 69
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=68.60 E-value=6.2 Score=27.32 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=17.9
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 62 ~G~V~~vG~~v~---------~~~~Gd~Vv~~ 84 (365)
T cd05279 62 AGIVESIGPGVT---------TLKPGDKVIPL 84 (365)
T ss_pred eEEEEEeCCCcc---------cCCCCCEEEEc
Confidence 589999998542 47899999864
No 70
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=68.39 E-value=6.2 Score=27.66 Aligned_cols=23 Identities=48% Similarity=0.816 Sum_probs=18.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 63 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 85 (386)
T cd08283 63 MGVVEEVGPEVR---------NLKVGDRVVVP 85 (386)
T ss_pred eEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 589999998642 48999999864
No 71
>PLN02702 L-idonate 5-dehydrogenase
Probab=67.83 E-value=6.2 Score=27.16 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=17.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 82 ~G~V~~vG~~v~---------~~~~Gd~V~~ 103 (364)
T PLN02702 82 AGIIEEVGSEVK---------HLVVGDRVAL 103 (364)
T ss_pred eEEEEEECCCCC---------CCCCCCEEEE
Confidence 589999998642 4789999986
No 72
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=67.80 E-value=5.1 Score=23.21 Aligned_cols=29 Identities=34% Similarity=0.586 Sum_probs=18.8
Q ss_pred ccCCCEEEeCCCCce------EEEECC--EEEEEEec
Q 045997 25 VKEGDTVLLPEYGGA------EVKLGD--KKYHLYED 53 (63)
Q Consensus 25 vk~GD~Vl~~~y~g~------ev~~~g--~~y~i~~e 53 (63)
+++||.|+|+.++-. +.++.| ++|++++-
T Consensus 2 f~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~ 38 (98)
T PF02559_consen 2 FKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEY 38 (98)
T ss_dssp --TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEE
T ss_pred CCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEE
Confidence 689999999998842 334444 47777654
No 73
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=67.52 E-value=6.5 Score=27.34 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=17.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 62 ~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (375)
T cd08282 62 MGEVEEVGSAVE---------SLKVGDRVVV 83 (375)
T ss_pred EEEEEEeCCCCC---------cCCCCCEEEE
Confidence 589999998542 4889999986
No 74
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=67.31 E-value=6.4 Score=26.49 Aligned_cols=22 Identities=45% Similarity=0.723 Sum_probs=17.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. ..++||+|+.
T Consensus 62 ~G~v~~vG~~v~---------~~~~Gd~V~~ 83 (339)
T cd08232 62 SGVVEAVGPGVT---------GLAPGQRVAV 83 (339)
T ss_pred eEEEEeeCCCCC---------cCCCCCEEEE
Confidence 588999998542 4789999985
No 75
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=67.28 E-value=12 Score=26.02 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=30.1
Q ss_pred eccCCCEEEe-CCCCceEEEECCEEEEEEecCCEEEEec
Q 045997 24 SVKEGDTVLL-PEYGGAEVKLGDKKYHLYEDESILGTLH 61 (63)
Q Consensus 24 ~vk~GD~Vl~-~~y~g~ev~~~g~~y~i~~e~DIla~i~ 61 (63)
.+++||+|.+ +..+...+..-+. |++++...|.+.+.
T Consensus 305 ~~~vGd~v~~ip~H~c~t~~~~~~-~~vv~~~~v~~~w~ 342 (345)
T cd07376 305 DLPIGDRVFLVPNHACETVALHDE-LYVVEGGRVAATWP 342 (345)
T ss_pred CCCCCCEEEEeCCccccchhcCCE-EEEEECCEEEEEEe
Confidence 5899999999 8888877777666 88899888887653
No 76
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=67.28 E-value=6.9 Score=26.36 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=18.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 64 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 86 (306)
T cd08258 64 SGTIVEVGPDVE---------GWKVGDRVVSE 86 (306)
T ss_pred EEEEEEECCCcC---------cCCCCCEEEEc
Confidence 589999998642 58999999874
No 77
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=67.17 E-value=7.6 Score=27.36 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=17.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++| ... ..|+||+|....
T Consensus 64 ~G~V~evG-~~~---------~~~~GdrVvv~~ 86 (350)
T COG1063 64 VGEVVEVG-VVR---------GFKVGDRVVVEP 86 (350)
T ss_pred eEEEEEec-ccc---------CCCCCCEEEECC
Confidence 58999999 432 478888888763
No 78
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=66.88 E-value=6.6 Score=26.67 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=17.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|++
T Consensus 62 ~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (337)
T cd05283 62 VGIVVAVGSKVT---------KFKVGDRVGV 83 (337)
T ss_pred eeEEEEECCCCc---------ccCCCCEEEE
Confidence 589999998642 4899999974
No 79
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=66.63 E-value=13 Score=20.81 Aligned_cols=32 Identities=44% Similarity=0.568 Sum_probs=17.7
Q ss_pred eEEEEEEC-CCe---eCCCCeEEee------eccCCCEEEeC
Q 045997 3 SGKVVAVG-PGA---RDVNGKFIPV------SVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG-~G~---~~~~G~~~p~------~vk~GD~Vl~~ 34 (63)
-++|+++. ++. ..-.|..... ++++||.|+.-
T Consensus 6 P~~Vv~v~~~~~~A~v~~~G~~~~V~~~lv~~v~~Gd~VLVH 47 (68)
T PF01455_consen 6 PGRVVEVDEDGGMAVVDFGGVRREVSLALVPDVKVGDYVLVH 47 (68)
T ss_dssp EEEEEEEETTTTEEEEEETTEEEEEEGTTCTSB-TT-EEEEE
T ss_pred cEEEEEEeCCCCEEEEEcCCcEEEEEEEEeCCCCCCCEEEEe
Confidence 36888883 232 1234555444 48999999863
No 80
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=66.45 E-value=20 Score=20.83 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=18.9
Q ss_pred eccCCCEEEeCC-CCceEEEECCEEE
Q 045997 24 SVKEGDTVLLPE-YGGAEVKLGDKKY 48 (63)
Q Consensus 24 ~vk~GD~Vl~~~-y~g~ev~~~g~~y 48 (63)
++++||+|+... .-|+=++++++..
T Consensus 37 ~L~~Gd~VvT~gGi~G~V~~i~d~~v 62 (84)
T TIGR00739 37 SLKKGDKVLTIGGIIGTVTKIAENTI 62 (84)
T ss_pred hCCCCCEEEECCCeEEEEEEEeCCEE
Confidence 689999999866 5677777776544
No 81
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=66.29 E-value=20 Score=24.09 Aligned_cols=22 Identities=55% Similarity=0.829 Sum_probs=17.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. ..++||+|+.
T Consensus 65 ~G~V~~vG~~~~---------~~~~Gd~V~~ 86 (341)
T cd08297 65 AGVVVAVGPGVS---------GLKVGDRVGV 86 (341)
T ss_pred ceEEEEeCCCCC---------CCCCCCEEEE
Confidence 588999987541 4789999985
No 82
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=65.30 E-value=7.5 Score=26.30 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=17.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 66 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 88 (341)
T PRK05396 66 VGEVVEVGSEVT---------GFKVGDRVSGE 88 (341)
T ss_pred EEEEEEeCCCCC---------cCCCCCEEEEC
Confidence 588999997642 48999999864
No 83
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=65.28 E-value=7.4 Score=26.80 Aligned_cols=22 Identities=55% Similarity=0.883 Sum_probs=17.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. ..++||+|+.
T Consensus 62 ~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (363)
T cd08279 62 AGVVEEVGPGVT---------GVKPGDHVVL 83 (363)
T ss_pred eEEEEEeCCCcc---------ccCCCCEEEE
Confidence 588999998642 4899999987
No 84
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=64.57 E-value=7.8 Score=26.05 Aligned_cols=24 Identities=46% Similarity=0.688 Sum_probs=18.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|.|+++|++.. ..++||+|+...
T Consensus 72 ~G~V~~vG~~v~---------~~~~Gd~V~~~~ 95 (341)
T cd08290 72 VGEVVKVGSGVK---------SLKPGDWVIPLR 95 (341)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEecC
Confidence 588999997642 478999999653
No 85
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=64.53 E-value=8.2 Score=25.50 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=17.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 63 ~G~v~~~G~~v~---------~~~~Gd~V~~~ 85 (332)
T cd08259 63 VGTVEEVGEGVE---------RFKPGDRVILY 85 (332)
T ss_pred eEEEEEECCCCc---------cCCCCCEEEEC
Confidence 588999998542 47899999854
No 86
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=64.48 E-value=4.6 Score=23.60 Aligned_cols=15 Identities=47% Similarity=0.682 Sum_probs=12.6
Q ss_pred eeccCCCEEEeCCCC
Q 045997 23 VSVKEGDTVLLPEYG 37 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~ 37 (63)
+.||+||+|++..-.
T Consensus 4 L~Vk~Gd~ViV~~~~ 18 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQ 18 (75)
T ss_pred cccCCCCEEEEecCc
Confidence 479999999997754
No 87
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=64.42 E-value=8.3 Score=26.37 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=18.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++...+ --...+++||+|+..
T Consensus 63 ~G~V~~vG~~v~~~---~~~~~~~~Gd~V~~~ 91 (361)
T cd08231 63 VGRVVALGGGVTTD---VAGEPLKVGDRVTWS 91 (361)
T ss_pred ceEEEEeCCCcccc---ccCCccCCCCEEEEc
Confidence 58999999864210 000138999999875
No 88
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=64.21 E-value=7.9 Score=26.96 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=18.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 90 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 112 (393)
T cd08246 90 SGIVWAVGEGVK---------NWKVGDEVVVH 112 (393)
T ss_pred EEEEEEeCCCCC---------cCCCCCEEEEe
Confidence 589999998642 47899999864
No 89
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=63.82 E-value=8.3 Score=25.94 Aligned_cols=23 Identities=43% Similarity=0.762 Sum_probs=18.0
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|++.. .+++||+|+..
T Consensus 86 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 108 (350)
T cd08274 86 VGRVVAVGEGVD---------TARIGERVLVD 108 (350)
T ss_pred eEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 589999998642 48899999863
No 90
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=63.77 E-value=8.1 Score=26.25 Aligned_cols=23 Identities=61% Similarity=0.843 Sum_probs=17.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+.-
T Consensus 75 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 97 (350)
T cd08240 75 VGEVVAVGPDAA---------DVKVGDKVLVY 97 (350)
T ss_pred eEEEEeeCCCCC---------CCCCCCEEEEC
Confidence 588999998642 47899999853
No 91
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=63.46 E-value=8.5 Score=24.40 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=17.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 32 ~G~v~~~G~~~~---------~~~~Gd~V~~~ 54 (288)
T smart00829 32 AGVVTRVGPGVT---------GLAVGDRVMGL 54 (288)
T ss_pred EEEEEeeCCCCc---------CCCCCCEEEEE
Confidence 588999987642 47899999874
No 92
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.58 E-value=13 Score=26.49 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=18.4
Q ss_pred eccCCCEEEeCCC----CceEEEECCEEEEEEe
Q 045997 24 SVKEGDTVLLPEY----GGAEVKLGDKKYHLYE 52 (63)
Q Consensus 24 ~vk~GD~Vl~~~y----~g~ev~~~g~~y~i~~ 52 (63)
.+++||+|+..+- .|+.+++. ..|+|+|
T Consensus 261 ~~~pGd~vvv~dg~mki~G~d~kV~-t~yiIcr 292 (293)
T COG4079 261 EVEPGDRVVVKDGVMKIDGKDLKVI-TGYIICR 292 (293)
T ss_pred ccCCCCEEEEecCceEeccccceee-eeeEEec
Confidence 5899999998762 34444443 3566665
No 93
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=62.51 E-value=8.8 Score=26.96 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=18.0
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 86 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 108 (398)
T TIGR01751 86 SGVVWRVGPGVT---------RWKVGDEVVAS 108 (398)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 589999998642 48999999864
No 94
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=62.44 E-value=9.1 Score=25.14 Aligned_cols=23 Identities=48% Similarity=0.771 Sum_probs=17.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 66 ~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (342)
T cd08266 66 AGVVEAVGPGVT---------NVKPGQRVVIY 88 (342)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 588999987542 47899999864
No 95
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=62.37 E-value=9 Score=25.33 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=17.0
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|.|+++|++.. .+++||+|+-
T Consensus 67 ~G~v~~vG~~v~---------~~~~Gd~V~~ 88 (334)
T PTZ00354 67 AGYVEDVGSDVK---------RFKEGDRVMA 88 (334)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEE
Confidence 588999997542 4789999975
No 96
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=61.95 E-value=23 Score=20.43 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=18.4
Q ss_pred EEEEEECCCe--eCCCCeEEe------eeccCCCEEEeC
Q 045997 4 GKVVAVGPGA--RDVNGKFIP------VSVKEGDTVLLP 34 (63)
Q Consensus 4 G~VvAVG~G~--~~~~G~~~p------~~vk~GD~Vl~~ 34 (63)
++|+++-.+. .+-.|.... .++++||.|+.-
T Consensus 7 ~~V~~i~~~~A~v~~~G~~~~v~l~lv~~~~vGD~VLVH 45 (76)
T TIGR00074 7 GQVVEIDENIALVEFCGIKRDVSLDLVGEVKVGDYVLVH 45 (76)
T ss_pred eEEEEEcCCEEEEEcCCeEEEEEEEeeCCCCCCCEEEEe
Confidence 5677775432 222344333 268999999864
No 97
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=61.78 E-value=9.8 Score=25.53 Aligned_cols=22 Identities=50% Similarity=0.742 Sum_probs=17.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 62 ~G~V~~~G~~v~---------~~~~Gd~V~~ 83 (338)
T PRK09422 62 IGIVKEVGPGVT---------SLKVGDRVSI 83 (338)
T ss_pred ceEEEEECCCCc---------cCCCCCEEEE
Confidence 588999997542 4789999985
No 98
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=61.65 E-value=9.1 Score=25.98 Aligned_cols=22 Identities=50% Similarity=0.801 Sum_probs=17.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|+... .+++||+|+.
T Consensus 63 ~G~V~~vG~~v~---------~~~~Gd~V~~ 84 (343)
T cd05285 63 AGTVVAVGSGVT---------HLKVGDRVAI 84 (343)
T ss_pred eEEEEeeCCCCC---------CCCCCCEEEE
Confidence 588999987431 4899999985
No 99
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=61.48 E-value=10 Score=25.27 Aligned_cols=23 Identities=39% Similarity=0.705 Sum_probs=17.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|++.. .+++||+|++.
T Consensus 66 ~G~v~~vG~~v~---------~~~~Gd~V~~~ 88 (327)
T PRK10754 66 AGVVSKVGSGVK---------HIKVGDRVVYA 88 (327)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEEC
Confidence 588888887542 47899999864
No 100
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=60.76 E-value=10 Score=26.51 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=18.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 69 ~G~V~~vG~~v~---------~~~~Gd~V~~~ 91 (373)
T cd08299 69 AGIVESVGEGVT---------TVKPGDKVIPL 91 (373)
T ss_pred eEEEEEeCCCCc---------cCCCCCEEEEC
Confidence 589999998642 47899999864
No 101
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=60.51 E-value=7.7 Score=23.87 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=13.3
Q ss_pred eccCCCEEEeCCCCc
Q 045997 24 SVKEGDTVLLPEYGG 38 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g 38 (63)
.+++||+++|.++.+
T Consensus 31 ~ikvGD~I~f~~~~~ 45 (109)
T cd06555 31 QIKVGDKILFNDLDT 45 (109)
T ss_pred cCCCCCEEEEEEcCC
Confidence 699999999999864
No 102
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=60.09 E-value=27 Score=23.27 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=16.9
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|.|+++|++.. .+++||+|+.
T Consensus 67 ~G~V~~vG~~v~---------~~~~Gd~V~~ 88 (329)
T cd08298 67 VGRVEAVGPGVT---------RFSVGDRVGV 88 (329)
T ss_pred cEEEEEECCCCC---------CCcCCCEEEE
Confidence 588899987542 4789999975
No 103
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=59.72 E-value=11 Score=24.50 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=16.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|.|+++|+... .+++||+|+.
T Consensus 66 ~G~v~~~G~~~~---------~~~~Gd~V~~ 87 (328)
T cd08268 66 AGVVEAVGAGVT---------GFAVGDRVSV 87 (328)
T ss_pred EEEEEeeCCCCC---------cCCCCCEEEe
Confidence 588888887532 4789999985
No 104
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=59.65 E-value=20 Score=23.90 Aligned_cols=32 Identities=31% Similarity=0.590 Sum_probs=20.4
Q ss_pred eEEeeeccCCCEEEeCC-CCceEEEECCEEEEE
Q 045997 19 KFIPVSVKEGDTVLLPE-YGGAEVKLGDKKYHL 50 (63)
Q Consensus 19 ~~~p~~vk~GD~Vl~~~-y~g~ev~~~g~~y~i 50 (63)
+.....+++||.|++|. |+=..|..+++.+.+
T Consensus 108 ~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~ 140 (182)
T PF06560_consen 108 DVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVF 140 (182)
T ss_dssp -EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEE
T ss_pred eEEEEEeCCCCEEEECCCceEEEEECCCCcEEE
Confidence 67778999999999998 555677777666554
No 105
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=59.36 E-value=12 Score=24.92 Aligned_cols=22 Identities=45% Similarity=0.739 Sum_probs=16.9
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|+... .+++||+|+.
T Consensus 65 ~G~v~~~G~~v~---------~~~~Gd~V~~ 86 (338)
T cd08254 65 AGTVVEVGAGVT---------NFKVGDRVAV 86 (338)
T ss_pred cEEEEEECCCCc---------cCCCCCEEEE
Confidence 488889887532 4789999985
No 106
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=59.25 E-value=13 Score=24.76 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=16.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|++
T Consensus 62 ~G~v~~~g~~~~---------~~~~Gd~V~~ 83 (330)
T cd08245 62 VGEVVEVGAGVE---------GRKVGDRVGV 83 (330)
T ss_pred eEEEEEECCCCc---------ccccCCEEEE
Confidence 588888886431 4789999985
No 107
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=59.07 E-value=11 Score=23.75 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=17.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|++.. .+++||+|+..
T Consensus 36 ~G~v~~~g~~~~---------~~~~Gd~V~~~ 58 (293)
T cd05195 36 SGIVTRVGSGVT---------GLKVGDRVMGL 58 (293)
T ss_pred eEEEEeecCCcc---------CCCCCCEEEEE
Confidence 578888887532 47899999864
No 108
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=59.07 E-value=11 Score=25.09 Aligned_cols=22 Identities=45% Similarity=0.626 Sum_probs=17.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 61 ~G~v~~vG~~v~---------~~~~Gd~V~~ 82 (334)
T cd08234 61 AGVVVAVGSKVT---------GFKVGDRVAV 82 (334)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEE
Confidence 588999997642 4789999986
No 109
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=58.14 E-value=12 Score=26.22 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=17.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 96 ~G~V~~vG~~v~---------~~~~Gd~V~~ 117 (384)
T cd08265 96 SGVVEKTGKNVK---------NFEKGDPVTA 117 (384)
T ss_pred EEEEEEECCCCC---------CCCCCCEEEE
Confidence 589999998542 4789999985
No 110
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=57.63 E-value=11 Score=25.26 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=17.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 82 ~G~v~~vG~~v~---------~~~~Gd~V~~~ 104 (350)
T cd08248 82 SGVVVDIGSGVK---------SFEIGDEVWGA 104 (350)
T ss_pred EEEEEecCCCcc---------cCCCCCEEEEe
Confidence 488999987542 47899999863
No 111
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=57.26 E-value=27 Score=23.24 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=25.0
Q ss_pred CCCeEEeeeccCCCEEEeCCCCceEEEE-CCEEEEE
Q 045997 16 VNGKFIPVSVKEGDTVLLPEYGGAEVKL-GDKKYHL 50 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~Vl~~~y~g~ev~~-~g~~y~i 50 (63)
.+|+.....+++||.++++.+....+.- .++.+.+
T Consensus 115 ~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~f 150 (191)
T PRK04190 115 PEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVF 150 (191)
T ss_pred CCCcEEEEEECCCCEEEECCCCcEEeEECCCCCEEE
Confidence 4556667899999999999987765544 3444443
No 112
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=57.06 E-value=23 Score=18.32 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=18.5
Q ss_pred eeeccCCCEEEeCCCCceEEEE-CCEEEEE
Q 045997 22 PVSVKEGDTVLLPEYGGAEVKL-GDKKYHL 50 (63)
Q Consensus 22 p~~vk~GD~Vl~~~y~g~ev~~-~g~~y~i 50 (63)
...+++||.++++.-.--.+.. .++++.+
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~ 67 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDEPARF 67 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSSEEEE
T ss_pred EeEccCCEEEEECCCCeEEEEECCCCCEEE
Confidence 5678888888888776555543 3344443
No 113
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=57.04 E-value=13 Score=24.54 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=17.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|++.. .+++||+|+..
T Consensus 68 ~G~v~~~G~~v~---------~~~~Gd~V~~~ 90 (324)
T cd08244 68 AGVVDAVGPGVD---------PAWLGRRVVAH 90 (324)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 588888887532 47899999874
No 114
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=57.01 E-value=13 Score=24.48 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=18.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|.|+++|++.. .+++||+|+...
T Consensus 65 ~G~v~~~G~~v~---------~~~~Gd~V~~~~ 88 (323)
T cd05282 65 VGVVVEVGSGVS---------GLLVGQRVLPLG 88 (323)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEEeC
Confidence 588889987642 478999999743
No 115
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=56.88 E-value=17 Score=23.77 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=20.4
Q ss_pred eccCCCEEEeCCCCceEEEECCEEEEEEecCC
Q 045997 24 SVKEGDTVLLPEYGGAEVKLGDKKYHLYEDES 55 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~D 55 (63)
.+++||.|.+..-.|+...+.=.+-.+++.+|
T Consensus 108 ~L~~GD~I~v~~~~g~~~~Y~V~~~~iV~~~d 139 (174)
T TIGR03784 108 ELRPGDVIRLQTPDGQWQSYQVTATRVVDESE 139 (174)
T ss_pred hCCCCCEEEEEECCCeEEEEEEeEEEEECCcc
Confidence 79999999998777765544323333444444
No 116
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=56.84 E-value=14 Score=23.84 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=17.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. ..++||+|+..
T Consensus 46 ~G~v~~~G~~v~---------~~~~Gd~V~~~ 68 (303)
T cd08251 46 SGVVRAVGPHVT---------RLAVGDEVIAG 68 (303)
T ss_pred eEEEEEECCCCC---------CCCCCCEEEEe
Confidence 588888887542 47899999853
No 117
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=56.80 E-value=21 Score=26.95 Aligned_cols=34 Identities=35% Similarity=0.554 Sum_probs=23.9
Q ss_pred EEEEEECCCeeCC---CCeEEeeeccCCCEEEeCCCCceEEE
Q 045997 4 GKVVAVGPGARDV---NGKFIPVSVKEGDTVLLPEYGGAEVK 42 (63)
Q Consensus 4 G~VvAVG~G~~~~---~G~~~p~~vk~GD~Vl~~~y~g~ev~ 42 (63)
|+|++ |....++ +|+-.|...++||.| |+|+-+.
T Consensus 128 g~v~~-g~~~vdes~lTGEs~pv~k~~gd~V----~aGt~~~ 164 (562)
T TIGR01511 128 GTVIE-GESEVDESLVTGESLPVPKKVGDPV----IAGTVNG 164 (562)
T ss_pred eEEEE-CceEEehHhhcCCCCcEEcCCCCEE----EeeeEEC
Confidence 45555 5544443 899999999999998 5676444
No 118
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=56.80 E-value=20 Score=20.17 Aligned_cols=40 Identities=30% Similarity=0.504 Sum_probs=31.5
Q ss_pred EEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECC
Q 045997 4 GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGD 45 (63)
Q Consensus 4 G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g 45 (63)
|+.+-||-+. -+|+..|-.+.+.....|-.|.|.|+.++.
T Consensus 25 G~~lYvgR~~--~~g~~~pGKv~p~~~~~yi~~~g~E~~~~~ 64 (71)
T smart00696 25 GEPLYVGRAY--YEGSLLPGKVVPSHGCAYIPYGGQEVRLDS 64 (71)
T ss_pred CCEEEEEEEE--ECCcEEEEEEEccCCEEEEEECCEEEEcCe
Confidence 4455666444 478899999999999999999999999853
No 119
>PRK02268 hypothetical protein; Provisional
Probab=56.70 E-value=6 Score=25.47 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=10.8
Q ss_pred EEee-eccCCCEEEe
Q 045997 20 FIPV-SVKEGDTVLL 33 (63)
Q Consensus 20 ~~p~-~vk~GD~Vl~ 33 (63)
..|+ -+|+||.++|
T Consensus 30 ~apl~RmkpGD~ivy 44 (141)
T PRK02268 30 AAPLRRMKPGDWIIY 44 (141)
T ss_pred cchhhcCCCCCEEEE
Confidence 3444 6899999997
No 120
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=56.69 E-value=12 Score=25.98 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=16.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|.|.+||++.. .+++||+|+.
T Consensus 83 ~G~v~~vg~~v~---------~~~~Gd~V~~ 104 (348)
T PLN03154 83 FGVSKVVDSDDP---------NFKPGDLISG 104 (348)
T ss_pred eEEEEEEecCCC---------CCCCCCEEEe
Confidence 468889997642 4799999974
No 121
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=56.43 E-value=14 Score=24.25 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=17.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|++.. .+++||+|+.-
T Consensus 60 ~G~v~~~G~~v~---------~~~~Gd~V~~~ 82 (305)
T cd08270 60 AGVVERAAADGS---------GPAVGARVVGL 82 (305)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 588889987532 47899999863
No 122
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=56.30 E-value=8.6 Score=31.19 Aligned_cols=16 Identities=44% Similarity=0.596 Sum_probs=14.8
Q ss_pred eccCCCEEEeCCCCce
Q 045997 24 SVKEGDTVLLPEYGGA 39 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ 39 (63)
++|+||+|-+..+.|+
T Consensus 660 pvkvGD~It~g~~~G~ 675 (835)
T COG3264 660 PVKVGDTVTIGTVSGT 675 (835)
T ss_pred CcccCCEEEECCceEE
Confidence 8999999999999984
No 123
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=56.09 E-value=14 Score=25.07 Aligned_cols=24 Identities=46% Similarity=0.731 Sum_probs=17.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .| .+++||+|+.
T Consensus 71 ~G~v~~vG~~v~--~~-----~~~~Gd~V~~ 94 (350)
T cd08256 71 VGRVVELGEGAE--ER-----GVKVGDRVIS 94 (350)
T ss_pred eEEEEEeCCCcc--cC-----CCCCCCEEEE
Confidence 589999997541 00 3789999985
No 124
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=55.39 E-value=14 Score=25.09 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=17.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|++.. .+++||+|+-.
T Consensus 63 ~G~v~~vG~~v~---------~~~~Gd~V~~~ 85 (339)
T cd08249 63 AGTVVEVGSGVT---------RFKVGDRVAGF 85 (339)
T ss_pred eEEEEEeCCCcC---------cCCCCCEEEEE
Confidence 588999998642 47899999853
No 125
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=55.23 E-value=14 Score=25.45 Aligned_cols=25 Identities=44% Similarity=0.751 Sum_probs=18.0
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++... +...++||+|+.
T Consensus 62 ~G~v~~vG~~~~~------~~~~~~Gd~V~~ 86 (367)
T cd08263 62 SGEVVEVGPNVEN------PYGLSVGDRVVG 86 (367)
T ss_pred ceEEEEeCCCCCC------CCcCCCCCEEEE
Confidence 5889999985421 123899999986
No 126
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=55.12 E-value=16 Score=25.01 Aligned_cols=22 Identities=45% Similarity=0.809 Sum_probs=16.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+ +||+|+.+
T Consensus 62 ~G~V~~vG~~v~---------~~-~GdrV~~~ 83 (349)
T TIGR03201 62 SGRVIQAGAGAA---------SW-IGKAVIVP 83 (349)
T ss_pred eEEEEEeCCCcC---------CC-CCCEEEEC
Confidence 589999998642 24 89999864
No 127
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=54.59 E-value=16 Score=24.73 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=17.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|.|+++|++.. .+++||+|+.
T Consensus 63 ~G~v~~vG~~v~---------~~~~Gd~V~~ 84 (333)
T cd08296 63 VGRIDAVGEGVS---------RWKVGDRVGV 84 (333)
T ss_pred eEEEEEECCCCc---------cCCCCCEEEe
Confidence 588999987542 4789999985
No 128
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=54.47 E-value=15 Score=24.51 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=17.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. ..++||+|+..
T Consensus 63 ~G~v~~~g~~~~---------~~~~G~~V~~~ 85 (334)
T PRK13771 63 VGTVEEVGENVK---------GFKPGDRVASL 85 (334)
T ss_pred eEEEEEeCCCCc---------cCCCCCEEEEC
Confidence 588889887542 47899999865
No 129
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=54.45 E-value=15 Score=24.29 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=17.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|++.. .+++||+|.--
T Consensus 66 ~G~v~~vG~~v~---------~~~~Gd~V~~~ 88 (331)
T cd08273 66 VGRVDALGSGVT---------GFEVGDRVAAL 88 (331)
T ss_pred EEEEEEeCCCCc---------cCCCCCEEEEe
Confidence 588888887542 47999999864
No 130
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=53.97 E-value=41 Score=20.38 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=18.6
Q ss_pred eccCCCEEEeCC-CCceEEEECCEEEEEEe
Q 045997 24 SVKEGDTVLLPE-YGGAEVKLGDKKYHLYE 52 (63)
Q Consensus 24 ~vk~GD~Vl~~~-y~g~ev~~~g~~y~i~~ 52 (63)
++++||+|+-.. .-|+-+.++++ .+.++
T Consensus 52 ~Lk~Gd~VvT~gGi~G~Vv~i~~~-~v~le 80 (106)
T PRK05585 52 SLAKGDEVVTNGGIIGKVTKVSED-FVIIE 80 (106)
T ss_pred hcCCCCEEEECCCeEEEEEEEeCC-EEEEE
Confidence 689999997654 55776777664 44443
No 131
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=53.88 E-value=4.3 Score=23.46 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=0.0
Q ss_pred eccCCCEEEeCC-CCceEEEECCEEEEEEec
Q 045997 24 SVKEGDTVLLPE-YGGAEVKLGDKKYHLYED 53 (63)
Q Consensus 24 ~vk~GD~Vl~~~-y~g~ev~~~g~~y~i~~e 53 (63)
++++||+|+... .-|+=++++++ ++.++-
T Consensus 36 ~Lk~Gd~VvT~gGi~G~V~~i~~~-~v~lei 65 (82)
T PF02699_consen 36 SLKPGDEVVTIGGIYGTVVEIDDD-TVVLEI 65 (82)
T ss_dssp -------------------------------
T ss_pred cCCCCCEEEECCcEEEEEEEEeCC-EEEEEE
Confidence 689999999865 66776666444 443433
No 132
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=53.50 E-value=11 Score=20.34 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=9.3
Q ss_pred eccCCCEEEeC
Q 045997 24 SVKEGDTVLLP 34 (63)
Q Consensus 24 ~vk~GD~Vl~~ 34 (63)
.+.+||+|.|.
T Consensus 40 ~~~vGD~V~~~ 50 (64)
T cd04451 40 RILPGDRVKVE 50 (64)
T ss_pred ccCCCCEEEEE
Confidence 37899999987
No 133
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.07 E-value=8.9 Score=23.90 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=10.8
Q ss_pred eccCCCEEEeCC
Q 045997 24 SVKEGDTVLLPE 35 (63)
Q Consensus 24 ~vk~GD~Vl~~~ 35 (63)
.+|+||+++|..
T Consensus 33 ~ik~GD~IiF~~ 44 (111)
T COG4043 33 QIKPGDKIIFNG 44 (111)
T ss_pred CCCCCCEEEEcC
Confidence 699999999975
No 134
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.91 E-value=17 Score=23.77 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=17.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 65 ~G~v~~~G~~~~---------~~~~Gd~V~~~ 87 (325)
T cd08271 65 AGVVVAVGAKVT---------GWKVGDRVAYH 87 (325)
T ss_pred EEEEEEeCCCCC---------cCCCCCEEEec
Confidence 588888887542 47899999864
No 135
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=52.75 E-value=16 Score=23.60 Aligned_cols=23 Identities=48% Similarity=0.684 Sum_probs=17.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|+... .+++||+|+..
T Consensus 66 ~G~v~~~g~~~~---------~~~~Gd~v~~~ 88 (325)
T cd08253 66 AGVVEAVGEGVD---------GLKVGDRVWLT 88 (325)
T ss_pred EEEEEeeCCCCC---------CCCCCCEEEEe
Confidence 478888886432 47899999864
No 136
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.42 E-value=17 Score=23.73 Aligned_cols=23 Identities=48% Similarity=0.689 Sum_probs=17.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|++.. .+++||+|+..
T Consensus 67 ~G~v~~~G~~v~---------~~~~Gd~V~~~ 89 (319)
T cd08267 67 AGEVVAVGSGVT---------RFKVGDEVFGR 89 (319)
T ss_pred eEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 578888887542 47899999864
No 137
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=52.40 E-value=17 Score=22.21 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.5
Q ss_pred eEEEECCEEEEEEecCCE
Q 045997 39 AEVKLGDKKYHLYEDESI 56 (63)
Q Consensus 39 ~ev~~~g~~y~i~~e~DI 56 (63)
+=+.++|++|+++|.++-
T Consensus 60 ~Gi~l~G~KY~~l~~d~~ 77 (127)
T cd00148 60 TGLTLGGQKYMVIRADDR 77 (127)
T ss_pred CCEEECCeEEEEEecCcc
Confidence 448999999999998874
No 138
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=52.00 E-value=19 Score=23.14 Aligned_cols=23 Identities=48% Similarity=0.716 Sum_probs=17.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|++.. .+++||+|+.-
T Consensus 63 ~G~v~~~g~~~~---------~~~~G~~V~~~ 85 (320)
T cd05286 63 AGVVEAVGPGVT---------GFKVGDRVAYA 85 (320)
T ss_pred eEEEEEECCCCC---------CCCCCCEEEEe
Confidence 578888887532 47899999874
No 139
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=51.39 E-value=17 Score=24.86 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=15.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++ +. ..+++||+|...
T Consensus 68 ~G~V~~v--~v---------~~~~vGdrV~~~ 88 (343)
T PRK09880 68 IGKIVHS--DS---------SGLKEGQTVAIN 88 (343)
T ss_pred EEEEEEe--cC---------ccCCCCCEEEEC
Confidence 4888888 22 158999999874
No 140
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=51.15 E-value=19 Score=23.45 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=17.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|+... .+++||+|+..
T Consensus 66 ~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (326)
T cd08272 66 AGVVEAVGEGVT---------RFRVGDEVYGC 88 (326)
T ss_pred eEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 588889887542 47899999853
No 141
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=51.11 E-value=20 Score=23.87 Aligned_cols=23 Identities=48% Similarity=0.642 Sum_probs=17.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|++.. .+++||+|+..
T Consensus 69 ~G~v~~vG~~v~---------~~~~Gd~V~~~ 91 (329)
T cd08250 69 VGEVVAVGEGVT---------DFKVGDAVATM 91 (329)
T ss_pred EEEEEEECCCCC---------CCCCCCEEEEe
Confidence 588899987542 47899999974
No 142
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=50.82 E-value=17 Score=21.50 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=14.8
Q ss_pred ceEEEECCEEEEEEecCC
Q 045997 38 GAEVKLGDKKYHLYEDES 55 (63)
Q Consensus 38 g~ev~~~g~~y~i~~e~D 55 (63)
.+-|.++|++|.++|.+|
T Consensus 58 ~~gi~l~G~kY~~~~~d~ 75 (121)
T PF00235_consen 58 SNGITLGGKKYIVLRADD 75 (121)
T ss_dssp HH-EEETTEEEEEEEEET
T ss_pred cCCeEEcCcEeEEEecCC
Confidence 356999999999999876
No 143
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=50.65 E-value=47 Score=19.41 Aligned_cols=11 Identities=27% Similarity=0.166 Sum_probs=8.7
Q ss_pred eccCCCEEEeC
Q 045997 24 SVKEGDTVLLP 34 (63)
Q Consensus 24 ~vk~GD~Vl~~ 34 (63)
.+++||.|+.-
T Consensus 42 ~~~vGDyVLVH 52 (82)
T PRK10413 42 ADLLGQWVLVH 52 (82)
T ss_pred ccccCCEEEEe
Confidence 46799999874
No 144
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.36 E-value=15 Score=27.13 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=16.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+.||+... -+|+||+|=.
T Consensus 74 aG~VvkvGs~V~---------~~kiGD~vGV 95 (360)
T KOG0023|consen 74 AGVVVKVGSNVT---------GFKIGDRVGV 95 (360)
T ss_pred eEEEEEECCCcc---------cccccCeeee
Confidence 589999999632 4788888754
No 145
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=50.27 E-value=20 Score=24.33 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=17.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. ..+++||+|+-.
T Consensus 67 ~G~V~~vG~~v~--------~~~~~Gd~V~~~ 90 (352)
T cd08247 67 SGVIVKVGSNVA--------SEWKVGDEVCGI 90 (352)
T ss_pred EEEEEEeCcccc--------cCCCCCCEEEEe
Confidence 588999987541 047899999843
No 146
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=49.89 E-value=24 Score=21.74 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=17.4
Q ss_pred eccCCCEEEeCC-CCceEEEECCEEEEEEe
Q 045997 24 SVKEGDTVLLPE-YGGAEVKLGDKKYHLYE 52 (63)
Q Consensus 24 ~vk~GD~Vl~~~-y~g~ev~~~g~~y~i~~ 52 (63)
++|+||+|+... .-|+=+++++ +++.+.
T Consensus 38 ~Lk~GD~VvT~gGi~G~V~~I~d-~~v~le 66 (109)
T PRK05886 38 SLQPGDRVHTTSGLQATIVGITD-DTVDLE 66 (109)
T ss_pred hcCCCCEEEECCCeEEEEEEEeC-CEEEEE
Confidence 678888888755 5566556654 344444
No 147
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=49.76 E-value=23 Score=19.39 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=6.0
Q ss_pred EeeeccCCCEEEeCC
Q 045997 21 IPVSVKEGDTVLLPE 35 (63)
Q Consensus 21 ~p~~vk~GD~Vl~~~ 35 (63)
+|+-++.||+|.++-
T Consensus 34 VP~FI~~Gd~I~VdT 48 (56)
T PF09285_consen 34 VPLFIEEGDKIKVDT 48 (56)
T ss_dssp EETT--TT-EEEEET
T ss_pred ccceecCCCEEEEEC
Confidence 444555555555443
No 148
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=49.34 E-value=12 Score=20.82 Aligned_cols=18 Identities=39% Similarity=0.839 Sum_probs=13.5
Q ss_pred eeeccCCCEEEeCC-CCce
Q 045997 22 PVSVKEGDTVLLPE-YGGA 39 (63)
Q Consensus 22 p~~vk~GD~Vl~~~-y~g~ 39 (63)
+..+++||.++|++ +.++
T Consensus 45 ~~~~~aGD~~~~p~G~~~~ 63 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGWTGT 63 (74)
T ss_dssp EEEEETTEEEEE-TTEEEE
T ss_pred EEEEcCCcEEEECCCCEEE
Confidence 37899999999998 4443
No 149
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=49.00 E-value=20 Score=24.68 Aligned_cols=33 Identities=33% Similarity=0.284 Sum_probs=21.0
Q ss_pred ceEEEEEECCCeeC-C----CC-----eEEeeeccCCCEEEeC
Q 045997 2 ISGKVVAVGPGARD-V----NG-----KFIPVSVKEGDTVLLP 34 (63)
Q Consensus 2 ~~G~VvAVG~G~~~-~----~G-----~~~p~~vk~GD~Vl~~ 34 (63)
.+|+||.|..+... + +. .--+..||+||.|...
T Consensus 42 iEGrVvEV~~~~i~iesk~yn~~v~i~~d~~~nvKVGD~VKaT 84 (213)
T PRK06763 42 IEGRVVEVDNGVIVIKSKQYEEPVSVYIDSLSNVKVGDEVKAT 84 (213)
T ss_pred eeeEEEEEeCCEEEEEeccCCCceEEEecCCCCcccCcEEEEc
Confidence 47999999988411 0 00 0123568999999754
No 150
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=48.98 E-value=15 Score=21.13 Aligned_cols=23 Identities=30% Similarity=0.720 Sum_probs=17.3
Q ss_pred CCCeEEee-eccCCCEEEeCCCCc
Q 045997 16 VNGKFIPV-SVKEGDTVLLPEYGG 38 (63)
Q Consensus 16 ~~G~~~p~-~vk~GD~Vl~~~y~g 38 (63)
.+|...|. .+.+||++-|+-|.+
T Consensus 34 ~dG~~~PCrv~~PG~~~Tf~Gygt 57 (68)
T PF01356_consen 34 TDGQEVPCRVIPPGDIATFPGYGT 57 (68)
T ss_dssp TTS-CEEEEEE-TTEEEEEE-TTT
T ss_pred eCCCcceeEEeCCCCEEEeccccc
Confidence 57788888 889999999999875
No 151
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=48.87 E-value=30 Score=18.95 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=15.5
Q ss_pred eccCCCEEEeCCCCc--eEEEECCEEEE
Q 045997 24 SVKEGDTVLLPEYGG--AEVKLGDKKYH 49 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g--~ev~~~g~~y~ 49 (63)
.+++||.+-++.... -.+.++|....
T Consensus 28 ~L~~Gdvi~l~~~~~~~v~l~v~g~~~~ 55 (77)
T PF01052_consen 28 NLKVGDVIPLDKPADEPVELRVNGQPIF 55 (77)
T ss_dssp C--TT-EEEECCESSTEEEEEETTEEEE
T ss_pred cCCCCCEEEeCCCCCCCEEEEECCEEEE
Confidence 678899998888744 45566776443
No 152
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=48.67 E-value=24 Score=22.20 Aligned_cols=34 Identities=15% Similarity=0.399 Sum_probs=22.6
Q ss_pred eeccCCCEEEeCCC------CceEEEECCEEEEEEecCCEE
Q 045997 23 VSVKEGDTVLLPEY------GGAEVKLGDKKYHLYEDESIL 57 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y------~g~ev~~~g~~y~i~~e~DIl 57 (63)
.++|+|.+++...- ..+.+.+.+. --|++++|||
T Consensus 3 l~LkpgERi~INGAVi~N~drr~~l~i~n~-a~~Lre~dil 42 (126)
T PF07378_consen 3 LSLKPGERIIINGAVIRNGDRRSTLEIEND-APFLREKDIL 42 (126)
T ss_pred eeecCCCEEEEcCeEEEeCCCceEEEEecC-CceechhccC
Confidence 57899999988541 1234555555 6677888876
No 153
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=48.57 E-value=21 Score=23.82 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=17.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. ..++||+|+..
T Consensus 68 ~G~v~~~G~~v~---------~~~~Gd~V~~~ 90 (336)
T cd08252 68 SGVVEAVGSEVT---------LFKVGDEVYYA 90 (336)
T ss_pred EEEEEEcCCCCC---------CCCCCCEEEEc
Confidence 578888887542 47899999974
No 154
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=48.41 E-value=17 Score=22.40 Aligned_cols=14 Identities=43% Similarity=0.515 Sum_probs=11.6
Q ss_pred eeeccCCCEEEeCC
Q 045997 22 PVSVKEGDTVLLPE 35 (63)
Q Consensus 22 p~~vk~GD~Vl~~~ 35 (63)
..++++||+||-+.
T Consensus 53 ~~~L~~GD~VLA~~ 66 (124)
T PF15057_consen 53 RHSLQVGDKVLAPW 66 (124)
T ss_pred cCcCCCCCEEEEec
Confidence 45899999999863
No 155
>PF12852 Cupin_6: Cupin
Probab=48.41 E-value=16 Score=23.02 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=18.6
Q ss_pred CCeEEeeeccCCCEEEeCCCCceEE
Q 045997 17 NGKFIPVSVKEGDTVLLPEYGGAEV 41 (63)
Q Consensus 17 ~G~~~p~~vk~GD~Vl~~~y~g~ev 41 (63)
+|...|..+..||.|+++.=..-.+
T Consensus 51 ~~~~~~~~L~~GDivllp~g~~H~l 75 (186)
T PF12852_consen 51 PGGGEPIRLEAGDIVLLPRGTAHVL 75 (186)
T ss_pred cCCCCeEEecCCCEEEEcCCCCeEe
Confidence 4434789999999999988654444
No 156
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=48.26 E-value=48 Score=19.17 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=18.0
Q ss_pred eEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecC
Q 045997 19 KFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDE 54 (63)
Q Consensus 19 ~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~ 54 (63)
...-+.|+..|.- ++-.|..|.++|+.|.+-+..
T Consensus 52 ~~~~L~v~~~d~~--~P~~gd~v~~dG~~y~V~~~~ 85 (95)
T PF13856_consen 52 TQPTLYVFSSDYP--KPRRGDRVVIDGESYTVTRFQ 85 (95)
T ss_dssp --EEEEE--SS-------TT-EEEETTEEEEEEEEE
T ss_pred CceEEEEEcCCCC--CCCCCCEEEECCeEEEEeEEe
Confidence 3344566666622 255688899999999987654
No 157
>PRK00276 infA translation initiation factor IF-1; Validated
Probab=48.18 E-value=15 Score=20.55 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=10.8
Q ss_pred eccCCCEEEeC--CCC
Q 045997 24 SVKEGDTVLLP--EYG 37 (63)
Q Consensus 24 ~vk~GD~Vl~~--~y~ 37 (63)
.+.+||.|.|. .|.
T Consensus 46 ~i~vGD~V~ve~~~~~ 61 (72)
T PRK00276 46 RILPGDKVTVELSPYD 61 (72)
T ss_pred ccCCCCEEEEEEcccC
Confidence 46789999998 553
No 158
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=48.11 E-value=14 Score=27.05 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=19.5
Q ss_pred CeeCCCCeEEeeeccCCCEEEeCCCCce
Q 045997 12 GARDVNGKFIPVSVKEGDTVLLPEYGGA 39 (63)
Q Consensus 12 G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ 39 (63)
|.........|..+|+||.|+.++-.|.
T Consensus 148 G~~~~~~~v~~~~~~~GD~vI~tg~~g~ 175 (339)
T COG0309 148 GIIDKEILVSPSGARPGDAVIVTGTIGI 175 (339)
T ss_pred EeecCCcccccCCCCCCCEEEEcCChhH
Confidence 3333333456667999999999987663
No 159
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=48.08 E-value=21 Score=21.84 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=15.1
Q ss_pred eEEEECCEEEEEEecCCE
Q 045997 39 AEVKLGDKKYHLYEDESI 56 (63)
Q Consensus 39 ~ev~~~g~~y~i~~e~DI 56 (63)
+=+.++|++|+++|.+|-
T Consensus 62 ~Gi~l~G~Ky~~~~~d~~ 79 (129)
T smart00392 62 NGLTLGGQKYMVIRADDR 79 (129)
T ss_pred CCeEECCeEEEEEEecCc
Confidence 448999999999997764
No 160
>COG4506 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.93 E-value=18 Score=23.51 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=19.3
Q ss_pred ceEEEECCEEEEEEecCCEEEEe
Q 045997 38 GAEVKLGDKKYHLYEDESILGTL 60 (63)
Q Consensus 38 g~ev~~~g~~y~i~~e~DIla~i 60 (63)
++.+|+++.++++||..|+...+
T Consensus 55 ~TtlKi~d~e~~liR~G~v~M~~ 77 (143)
T COG4506 55 VTTLKIDDDELLLIRSGDVNMRM 77 (143)
T ss_pred EEEEEEcCCEEEEEEcccchhhh
Confidence 37789999999999999987543
No 161
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=47.10 E-value=20 Score=18.53 Aligned_cols=16 Identities=44% Similarity=0.594 Sum_probs=11.3
Q ss_pred CCeEEeeeccCCCEEE
Q 045997 17 NGKFIPVSVKEGDTVL 32 (63)
Q Consensus 17 ~G~~~p~~vk~GD~Vl 32 (63)
+|....+.|+.||.|-
T Consensus 10 ~G~V~~v~V~~G~~Vk 25 (50)
T PF13533_consen 10 SGRVESVYVKEGQQVK 25 (50)
T ss_pred CEEEEEEEecCCCEEc
Confidence 5666677777877774
No 162
>PRK11171 hypothetical protein; Provisional
Probab=47.03 E-value=50 Score=22.64 Aligned_cols=42 Identities=31% Similarity=0.503 Sum_probs=25.5
Q ss_pred CCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEEC-C--EEEEEEec
Q 045997 10 GPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLG-D--KKYHLYED 53 (63)
Q Consensus 10 G~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~-g--~~y~i~~e 53 (63)
|.+....+|+ ...|++||.+.|+.+.-..+.-- + -.|+++++
T Consensus 214 G~~~~~~~~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~ 258 (266)
T PRK11171 214 GKGVYRLNND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKD 258 (266)
T ss_pred CEEEEEECCE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEcc
Confidence 4444333332 35688888888888877777642 2 35665553
No 163
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=46.81 E-value=53 Score=20.31 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=21.8
Q ss_pred eccCCCEEEeCC-CCceEEEECCE-EEEEEecCCEEEE
Q 045997 24 SVKEGDTVLLPE-YGGAEVKLGDK-KYHLYEDESILGT 59 (63)
Q Consensus 24 ~vk~GD~Vl~~~-y~g~ev~~~g~-~y~i~~e~DIla~ 59 (63)
++|+||+|+-.- .-|+=++++++ ..+.+.-+.+...
T Consensus 36 sLk~GD~VvT~GGi~G~V~~I~~~~~~v~le~~gv~i~ 73 (113)
T PRK06531 36 AIQKGDEVVTIGGLYGTVDEVDTEAKTIVLDVDGVYLT 73 (113)
T ss_pred hcCCCCEEEECCCcEEEEEEEecCCCEEEEEECCEEEE
Confidence 689999998644 55665566543 4555554444333
No 164
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=46.81 E-value=23 Score=23.96 Aligned_cols=22 Identities=50% Similarity=0.693 Sum_probs=16.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|+... ..++||+|+.
T Consensus 66 ~G~V~~~G~~v~---------~~~~Gd~V~~ 87 (341)
T cd05281 66 AGEVVEVGEGVT---------RVKVGDYVSA 87 (341)
T ss_pred EEEEEEECCCCC---------CCCCCCEEEE
Confidence 588889887531 4789999976
No 165
>PF05203 Hom_end_hint: Hom_end-associated Hint; InterPro: IPR007868 Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life. The crystal structure of the homing nuclease PI-Sce [] revealed two domains: an endonucleolytic centre resembling the C-terminal domain of Drosophila melanogaster Hedgehog protein, and a second domain containing the protein-splicing active site. This domain corresponds to the protein-splicing domain.; GO: 0030908 protein splicing; PDB: 1LWT_A 1UM2_B 1JVA_B 1GPP_A 1VDE_A 1EF0_B 1DFA_A 1LWS_A.
Probab=46.74 E-value=33 Score=23.18 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=19.4
Q ss_pred EECCCeeCCCCeEEee-eccCCCEEEeCCCCceEE
Q 045997 8 AVGPGARDVNGKFIPV-SVKEGDTVLLPEYGGAEV 41 (63)
Q Consensus 8 AVG~G~~~~~G~~~p~-~vk~GD~Vl~~~y~g~ev 41 (63)
|-|+-....+|...+. .+++||.|+=++-...+|
T Consensus 3 ~~gT~vlmaDG~~k~ie~i~~Gd~vmg~dg~~r~V 37 (215)
T PF05203_consen 3 AKGTRVLMADGSIKPIEDIKIGDQVMGPDGRPRRV 37 (215)
T ss_dssp ETT-EEEBTTS-EEEGGG--TT-EEEBTTSSEEEE
T ss_pred CCCCEEEecCCCeeEEeecccCCEEECCCCCcEEE
Confidence 3345455688988888 999999999655443333
No 166
>PRK10689 transcription-repair coupling factor; Provisional
Probab=46.61 E-value=35 Score=28.43 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=24.1
Q ss_pred eeccCCCEEEeCCCC-----c-eEEEECC--EEEEEEecC
Q 045997 23 VSVKEGDTVLLPEYG-----G-AEVKLGD--KKYHLYEDE 54 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~-----g-~ev~~~g--~~y~i~~e~ 54 (63)
..+++||.|++..|+ | ..++++| .+|+.++-.
T Consensus 475 ~~l~~Gd~VVh~~~Gig~~~gi~~~~~~g~~~~~~~l~y~ 514 (1147)
T PRK10689 475 AELHPGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA 514 (1147)
T ss_pred hhCCCCCEEEecCCCeEEEeeEEEEecCCcceeEEEEEEC
Confidence 489999999999977 3 3456666 688887753
No 167
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=46.54 E-value=23 Score=22.79 Aligned_cols=23 Identities=52% Similarity=0.694 Sum_probs=16.9
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 66 ~G~v~~vg~~~~---------~~~~Gd~V~~~ 88 (323)
T cd05276 66 AGVVVAVGPGVT---------GWKVGDRVCAL 88 (323)
T ss_pred EEEEEeeCCCCC---------CCCCCCEEEEe
Confidence 578888887531 47899999864
No 168
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=46.44 E-value=24 Score=23.45 Aligned_cols=19 Identities=21% Similarity=0.036 Sum_probs=14.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++ .++||+|..
T Consensus 59 ~G~Vv~~G~~------------~~~G~~V~~ 77 (319)
T cd08242 59 VGIVEEGPEA------------ELVGKRVVG 77 (319)
T ss_pred EEEEEEeCCC------------CCCCCeEEE
Confidence 5889999974 358888863
No 169
>PF13403 Hint_2: Hint domain
Probab=46.33 E-value=63 Score=20.33 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=25.7
Q ss_pred eCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEE
Q 045997 14 RDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYH 49 (63)
Q Consensus 14 ~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~ 49 (63)
...+|.+.--.+++||+|+=.+-.-++|..=+...+
T Consensus 10 ~T~~G~~~Ve~L~~GD~V~T~dgg~~~V~wig~~~~ 45 (147)
T PF13403_consen 10 ETPDGPRPVEDLRPGDRVLTRDGGFQPVRWIGRRTV 45 (147)
T ss_pred ecCCcCeEeeccCCCCEEEecCCCEEEEEEEEEEEe
Confidence 446676666699999999977766677766555443
No 170
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=46.22 E-value=6.3 Score=26.05 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=18.0
Q ss_pred eCCCCeEEeeeccCCCEEEeC
Q 045997 14 RDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 14 ~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.+.+|+.++...++||.|++-
T Consensus 49 v~~dG~~~~i~g~vGdtlLd~ 69 (159)
T KOG3309|consen 49 VDPDGEEIKIKGKVGDTLLDA 69 (159)
T ss_pred ECCCCCEEEeeeecchHHHHH
Confidence 347999999999999999873
No 171
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=46.04 E-value=29 Score=18.08 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=13.4
Q ss_pred CCCCeEEee----eccCCCEEEeCC
Q 045997 15 DVNGKFIPV----SVKEGDTVLLPE 35 (63)
Q Consensus 15 ~~~G~~~p~----~vk~GD~Vl~~~ 35 (63)
+++|++... ..++||.|.|++
T Consensus 12 T~dGeF~~ik~~~~~~vG~eI~~~~ 36 (56)
T PF12791_consen 12 TPDGEFIKIKRKPGMEVGQEIEFDE 36 (56)
T ss_pred cCCCcEEEEeCCCCCcccCEEEEec
Confidence 466776544 466777777655
No 172
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=45.77 E-value=22 Score=23.64 Aligned_cols=21 Identities=33% Similarity=0.246 Sum_probs=15.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++ .+++||+|+..
T Consensus 73 ~G~V~~~G~~-----------~~~~Gd~V~~~ 93 (329)
T cd05288 73 VGEVVESRSP-----------DFKVGDLVSGF 93 (329)
T ss_pred EEEEEecCCC-----------CCCCCCEEecc
Confidence 4777777742 48999999864
No 173
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=44.81 E-value=42 Score=19.90 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=22.9
Q ss_pred ceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCC
Q 045997 2 ISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEY 36 (63)
Q Consensus 2 ~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y 36 (63)
+.|+|.++......- -=..|.+...|++|.++..
T Consensus 42 t~G~V~~~k~d~~~v-~L~~Pvc~~~g~rvaiSRr 75 (88)
T PF09173_consen 42 TGGVVTSVKKDMAEV-ELKKPVCAEKGERVAISRR 75 (88)
T ss_dssp EEEEEEEEETTEEEE-EEEEEEE-STTSEEEEEEE
T ss_pred ccEEEEEEECCEEEE-EecCCeEcCcCCeeeeehh
Confidence 357888888754221 1246889999999998763
No 174
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.77 E-value=27 Score=22.93 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=17.0
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|++.. .+++||+|+..
T Consensus 65 ~G~v~~~g~~~~---------~~~~G~~V~~~ 87 (337)
T cd08275 65 AGTVEAVGEGVK---------DFKVGDRVMGL 87 (337)
T ss_pred EEEEEEECCCCc---------CCCCCCEEEEe
Confidence 578888887542 47889999864
No 175
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=44.66 E-value=39 Score=27.55 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=23.7
Q ss_pred eeccCCCEEEeCCCC-----c-eEEEECC--EEEEEEecC
Q 045997 23 VSVKEGDTVLLPEYG-----G-AEVKLGD--KKYHLYEDE 54 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~-----g-~ev~~~g--~~y~i~~e~ 54 (63)
..+++||.|++..|+ | ..++++| .+|+.++-.
T Consensus 326 ~~l~~Gd~VVh~~~Gig~~~gi~~~~~~g~~~dy~~l~y~ 365 (926)
T TIGR00580 326 NELNPGDYVVHLDHGIGRFLGLETLEVGGIERDYLVLEYA 365 (926)
T ss_pred hhCCCCCEEEecCCCeEEEeeEEEEecCCcceeEEEEEEC
Confidence 489999999999977 3 3455555 588887643
No 176
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=44.07 E-value=13 Score=22.76 Aligned_cols=13 Identities=31% Similarity=0.490 Sum_probs=7.7
Q ss_pred eccCCCEEEeCCC
Q 045997 24 SVKEGDTVLLPEY 36 (63)
Q Consensus 24 ~vk~GD~Vl~~~y 36 (63)
.+|+||.|+|=..
T Consensus 39 ~mk~GD~vifY~s 51 (143)
T PF01878_consen 39 RMKPGDKVIFYHS 51 (143)
T ss_dssp C--TT-EEEEEET
T ss_pred cCCCCCEEEEEEc
Confidence 7999999999443
No 177
>PRK12784 hypothetical protein; Provisional
Probab=43.83 E-value=35 Score=20.33 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=17.5
Q ss_pred EEEEECCCeeCCCCeEEeeeccCCCEEE
Q 045997 5 KVVAVGPGARDVNGKFIPVSVKEGDTVL 32 (63)
Q Consensus 5 ~VvAVG~G~~~~~G~~~p~~vk~GD~Vl 32 (63)
+.+|+|- +|......|.+||.|.
T Consensus 44 e~v~vGi-----SG~I~~v~Ve~Gq~i~ 66 (84)
T PRK12784 44 EKVAVGI-----SGNIRLVNVVVGQQIH 66 (84)
T ss_pred EEEEEee-----eeeEEEEEeecCceec
Confidence 4567764 5778888999999876
No 178
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=43.81 E-value=18 Score=20.85 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=14.0
Q ss_pred CCeEEeeeccCCCEEEeCCCCc
Q 045997 17 NGKFIPVSVKEGDTVLLPEYGG 38 (63)
Q Consensus 17 ~G~~~p~~vk~GD~Vl~~~y~g 38 (63)
+........++||.|+|+.+--
T Consensus 62 ~~~~~~~~p~~G~lvlFPs~l~ 83 (101)
T PF13759_consen 62 NSPYYIVEPEEGDLVLFPSWLW 83 (101)
T ss_dssp C-SEEEE---TTEEEEEETTSE
T ss_pred cCceEEeCCCCCEEEEeCCCCE
Confidence 3456667899999999998653
No 179
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=43.77 E-value=27 Score=22.41 Aligned_cols=24 Identities=50% Similarity=0.706 Sum_probs=17.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|.|+++|++.. .+++||+|+...
T Consensus 68 ~G~v~~~G~~~~---------~~~~G~~V~~~~ 91 (309)
T cd05289 68 AGVVVAVGPGVT---------GFKVGDEVFGMT 91 (309)
T ss_pred eEEEEeeCCCCC---------CCCCCCEEEEcc
Confidence 578888887542 478999998643
No 180
>PRK10671 copA copper exporting ATPase; Provisional
Probab=43.73 E-value=40 Score=26.60 Aligned_cols=34 Identities=35% Similarity=0.539 Sum_probs=23.0
Q ss_pred EEEEEECCCeeCC---CCeEEeeeccCCCEEEeCCCCceEEE
Q 045997 4 GKVVAVGPGARDV---NGKFIPVSVKEGDTVLLPEYGGAEVK 42 (63)
Q Consensus 4 G~VvAVG~G~~~~---~G~~~p~~vk~GD~Vl~~~y~g~ev~ 42 (63)
|+|+. |....++ +|+-.|...++||.|+ +|+-+.
T Consensus 359 g~v~~-g~~~vdeS~lTGEs~pv~k~~gd~V~----aGt~~~ 395 (834)
T PRK10671 359 GEITQ-GEAWLDEAMLTGEPIPQQKGEGDSVH----AGTVVQ 395 (834)
T ss_pred EEEEE-ceEEEeehhhcCCCCCEecCCCCEEE----ecceec
Confidence 44444 4443332 8999999999999985 666554
No 181
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=43.64 E-value=71 Score=19.07 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=24.7
Q ss_pred eccCCCEEEeCCCC--c--eEEEE-CCEEEEEEecCCEE
Q 045997 24 SVKEGDTVLLPEYG--G--AEVKL-GDKKYHLYEDESIL 57 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~--g--~ev~~-~g~~y~i~~e~DIl 57 (63)
++++|+.|.|..=+ | ..|+. +|..+.+|...+++
T Consensus 2 ~I~vGs~VRY~~TGT~G~V~diK~ed~~~wv~LD~t~L~ 40 (91)
T PF09871_consen 2 PIKVGSYVRYINTGTVGKVVDIKEEDGETWVLLDSTDLY 40 (91)
T ss_pred cceeCCEEEECCCCeEEEEEEEEEeCCCeEEEEccCCce
Confidence 57899999998844 4 34554 57888888777664
No 182
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=43.29 E-value=34 Score=20.98 Aligned_cols=40 Identities=33% Similarity=0.330 Sum_probs=22.9
Q ss_pred EEEEECCCeeCCCCeEEee--eccCCCEEEeC-C--CCceEEEEC
Q 045997 5 KVVAVGPGARDVNGKFIPV--SVKEGDTVLLP-E--YGGAEVKLG 44 (63)
Q Consensus 5 ~VvAVG~G~~~~~G~~~p~--~vk~GD~Vl~~-~--y~g~ev~~~ 44 (63)
.-|.+|+.-...+=.+.|. .|++||+|.|. . -..-.+...
T Consensus 24 ~~v~~G~~~~~g~~~F~P~~ltV~~GdTVtw~~~~d~~~HnV~s~ 68 (115)
T TIGR03102 24 VTVDVGAEANGGGFAFDPPAIRVDPGTTVVWEWTGEGGGHNVVSD 68 (115)
T ss_pred EEEEecccCCCCceeEeCCEEEECCCCEEEEEECCCCCCEEEEEC
Confidence 3477775321111135554 79999999996 2 234555543
No 183
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=43.25 E-value=40 Score=16.75 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=15.9
Q ss_pred eccCCCEEEeCCCC-ceEEEECCEEEEEE
Q 045997 24 SVKEGDTVLLPEYG-GAEVKLGDKKYHLY 51 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~-g~ev~~~g~~y~i~ 51 (63)
.+++||.|.+..-. ..+|.++++.++++
T Consensus 41 ~v~~~d~i~i~~~~~~~~i~~ed~~~lvv 69 (70)
T cd00165 41 KVKPGDVIEVDGKSIEEDIVYEDKKLLVV 69 (70)
T ss_pred CcCCCCEEEEcCCCcccceeeccCCEEEe
Confidence 67888988876421 11444555555543
No 184
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=43.11 E-value=30 Score=22.52 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=15.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|. . .+++||+|+-.
T Consensus 65 ~G~v~~vG~----~-------~~~~Gd~V~~~ 85 (320)
T cd08243 65 VGEVEEAPG----G-------TFTPGQRVATA 85 (320)
T ss_pred EEEEEEecC----C-------CCCCCCEEEEe
Confidence 488888883 1 47899999853
No 185
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=42.99 E-value=34 Score=21.09 Aligned_cols=19 Identities=32% Similarity=0.721 Sum_probs=15.7
Q ss_pred eccCCCEEEeCCCCc---eEEE
Q 045997 24 SVKEGDTVLLPEYGG---AEVK 42 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g---~ev~ 42 (63)
.+++||++++....| +.|+
T Consensus 26 tL~~GD~Iv~g~~~Gpi~tkVR 47 (110)
T cd03703 26 TLREGDTIVVCGLNGPIVTKVR 47 (110)
T ss_pred eEecCCEEEEccCCCCceEEEe
Confidence 789999999988777 5664
No 186
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=42.98 E-value=15 Score=22.01 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=9.2
Q ss_pred eccCCCEEEeC
Q 045997 24 SVKEGDTVLLP 34 (63)
Q Consensus 24 ~vk~GD~Vl~~ 34 (63)
++++||.|+.-
T Consensus 41 ~~~vGDyVLVH 51 (90)
T PRK10409 41 QPRVGQWVLVH 51 (90)
T ss_pred ccCCCCEEEEe
Confidence 48999999863
No 187
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=42.97 E-value=34 Score=21.31 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=14.8
Q ss_pred eccCCCEEEeCCCCceEEEE
Q 045997 24 SVKEGDTVLLPEYGGAEVKL 43 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~ 43 (63)
.+++||+|.+..-.|+...+
T Consensus 72 ~l~~GD~I~v~~~~g~~~~Y 91 (144)
T cd05829 72 DLRKGDKVEVTRADGQTATF 91 (144)
T ss_pred cCCCCCEEEEEECCCCEEEE
Confidence 89999999998755544443
No 188
>PF03293 Pox_RNA_pol: Poxvirus DNA-directed RNA polymerase, 18 kD subunit; InterPro: IPR004973 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The Poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. The enzyme consists of at least eight subunits, this is the 18 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0019083 viral transcription
Probab=42.77 E-value=62 Score=21.29 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=24.2
Q ss_pred eeccCCCEEEeCCCCceEEEECCEEEEEEecCCEE
Q 045997 23 VSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESIL 57 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIl 57 (63)
..|.-||.+---.-..-.|.+++.+|.|+|..-+.
T Consensus 97 i~V~CgDLiCkl~rdsGtVSf~dsKYCfirNg~vY 131 (160)
T PF03293_consen 97 ITVQCGDLICKLSRDSGTVSFNDSKYCFIRNGVVY 131 (160)
T ss_pred eEEEcCcEEEEeeccCCeEEecCceEEEEECCEEe
Confidence 46777777754333444688999999999976543
No 189
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=42.05 E-value=31 Score=22.32 Aligned_cols=23 Identities=48% Similarity=0.611 Sum_probs=16.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|.|+++|+... .+++||+|+--
T Consensus 66 ~G~v~~vg~~~~---------~~~~Gd~V~~~ 88 (325)
T TIGR02824 66 AGEVVAVGEGVS---------RWKVGDRVCAL 88 (325)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 478888886431 47899999863
No 190
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=42.03 E-value=61 Score=17.85 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=19.2
Q ss_pred CeEEeeeccCCCEEEeCCCCceEEEECCEEEEE
Q 045997 18 GKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHL 50 (63)
Q Consensus 18 G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i 50 (63)
|+......+..=+|.+..-++.++++||+.+=+
T Consensus 29 G~~~~~~~~~~~~i~iGna~~v~v~~nG~~~~~ 61 (77)
T PF13464_consen 29 GETKTFEGKEPFRIRIGNAGAVEVTVNGKPVDL 61 (77)
T ss_pred CcEEEEeCCCCEEEEEeCCCcEEEEECCEECCC
Confidence 333333333333445556667888888887755
No 191
>TIGR03635 S17_bact 30S ribosomal protein S17. This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.
Probab=41.34 E-value=14 Score=21.01 Aligned_cols=12 Identities=42% Similarity=0.495 Sum_probs=10.6
Q ss_pred eccCCCEEEeCC
Q 045997 24 SVKEGDTVLLPE 35 (63)
Q Consensus 24 ~vk~GD~Vl~~~ 35 (63)
.+++||+|.+.+
T Consensus 48 ~~k~GD~V~I~e 59 (71)
T TIGR03635 48 ECKVGDVVRIIE 59 (71)
T ss_pred CCCCCCEEEEEE
Confidence 699999999865
No 192
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region []. This entry represents the C-terminal region of the Orn/DAP/Arg decarboxylases.; GO: 0003824 catalytic activity; PDB: 1TWI_B 1TUF_A 3MT1_A 3N2B_C 2O0T_A 1HKW_A 1HKV_A 3VAB_A 3N2O_A 7ODC_A ....
Probab=41.25 E-value=26 Score=20.23 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=12.4
Q ss_pred EeeeccCCCEEEeCCCCc
Q 045997 21 IPVSVKEGDTVLLPEYGG 38 (63)
Q Consensus 21 ~p~~vk~GD~Vl~~~y~g 38 (63)
.|..+++||.++|..-++
T Consensus 79 lP~~l~~GD~l~f~~~GA 96 (116)
T PF00278_consen 79 LPKELEVGDWLVFENMGA 96 (116)
T ss_dssp EESTTTTT-EEEESS-SS
T ss_pred CCCCCCCCCEEEEecCcc
Confidence 344799999999988443
No 193
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=40.99 E-value=18 Score=20.25 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=11.4
Q ss_pred eeccCCCEEEeCCC
Q 045997 23 VSVKEGDTVLLPEY 36 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y 36 (63)
.-++.||+|.+.+|
T Consensus 52 ~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 52 AGAKDGDTVRIGDF 65 (69)
T ss_pred cCCCCCCEEEEccE
Confidence 45899999998765
No 194
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=40.58 E-value=27 Score=23.44 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=13.9
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|.++|+ .+++||+|+.
T Consensus 66 ~g~v~~~~~------------~~~~GdrV~~ 84 (325)
T TIGR02825 66 ARVVESKNV------------ALPKGTIVLA 84 (325)
T ss_pred EEEEEeCCC------------CCCCCCEEEE
Confidence 367777653 4789999986
No 195
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=40.54 E-value=35 Score=22.48 Aligned_cols=23 Identities=48% Similarity=0.716 Sum_probs=16.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|+... .+++||+|+-.
T Consensus 66 ~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (336)
T cd08276 66 AGEVVAVGEGVT---------RFKVGDRVVPT 88 (336)
T ss_pred eEEEEEeCCCCc---------CCCCCCEEEEe
Confidence 578888886432 46889998864
No 196
>smart00783 A_amylase_inhib Alpha amylase inhibitor. Alpha amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases.
Probab=40.53 E-value=28 Score=20.02 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=20.0
Q ss_pred CCCeEEee-eccCCCEEEeCCCCce
Q 045997 16 VNGKFIPV-SVKEGDTVLLPEYGGA 39 (63)
Q Consensus 16 ~~G~~~p~-~vk~GD~Vl~~~y~g~ 39 (63)
.+|...|. .+.+||..-|+-|.++
T Consensus 35 ~dg~~~pCr~~~PG~~~Tf~GYgt~ 59 (69)
T smart00783 35 TDGTWGPCRTAAPGDITTFGGYGTN 59 (69)
T ss_pred eCCCcceeEeeCCCCEEEecccccC
Confidence 57777787 8899999999998763
No 197
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=40.46 E-value=25 Score=29.08 Aligned_cols=32 Identities=38% Similarity=0.663 Sum_probs=26.9
Q ss_pred CceEEEEEECCCeeCC-----------------CCeEEeeeccCCCEEE
Q 045997 1 LISGKVVAVGPGARDV-----------------NGKFIPVSVKEGDTVL 32 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~-----------------~G~~~p~~vk~GD~Vl 32 (63)
++.|.++.|.||.+-+ +|+-.|.+=|+||+|+
T Consensus 397 vq~gdivkV~pG~kiPvDG~Vv~Gss~VDEs~iTGEs~PV~Kk~gs~Vi 445 (951)
T KOG0207|consen 397 VQVGDIVKVKPGEKIPVDGVVVDGSSEVDESLITGESMPVPKKKGSTVI 445 (951)
T ss_pred eccCCEEEECCCCccccccEEEeCceeechhhccCCceecccCCCCeee
Confidence 3678999999986431 8999999999999998
No 198
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal. These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.
Probab=39.83 E-value=25 Score=19.21 Aligned_cols=28 Identities=25% Similarity=0.539 Sum_probs=16.1
Q ss_pred CCeEEeeeccCCCEEEeCCCC--ceEEEEC
Q 045997 17 NGKFIPVSVKEGDTVLLPEYG--GAEVKLG 44 (63)
Q Consensus 17 ~G~~~p~~vk~GD~Vl~~~y~--g~ev~~~ 44 (63)
++...|-.+.-|-.|..|.|= |..|++|
T Consensus 18 ~~~~K~A~letG~~i~VP~FI~~Gd~I~V~ 47 (56)
T smart00841 18 SGGTKPATLETGAVVQVPLFINEGDKIKVD 47 (56)
T ss_pred CCCcceEEECCCCEEEcCCcccCCCEEEEE
Confidence 344455666666666666653 4555554
No 199
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=39.67 E-value=18 Score=21.77 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=13.9
Q ss_pred eeccCCCEEEeCCCCce
Q 045997 23 VSVKEGDTVLLPEYGGA 39 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~g~ 39 (63)
+-+++||.|+.+.|.-+
T Consensus 56 iwI~~GD~VlVsp~d~~ 72 (99)
T TIGR00523 56 IWIREGDVVIVKPWEFQ 72 (99)
T ss_pred EEecCCCEEEEEEccCC
Confidence 45899999999877654
No 200
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=39.36 E-value=1.2e+02 Score=20.70 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=33.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEE
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHL 50 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i 50 (63)
.|++.|--||.. .|...++||...+++.....++++...+.+
T Consensus 127 ~G~~~~~~~g~~------~~evy~pGd~~~l~rg~a~~y~m~~~tw~L 168 (216)
T PF04622_consen 127 SGEQWAWSPGSL------EPEVYKPGDSHHLPRGEAKQYQMPPGTWAL 168 (216)
T ss_pred EEEEEEEcCCCC------CceEeccCCEEEecCceEEEEEeCCCeEEE
Confidence 577777666653 367899999999999999999998777765
No 201
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=39.07 E-value=63 Score=22.45 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=25.2
Q ss_pred eccCCCEEEeCC-CCceEEEECCEEEEEEecCCEEEEe
Q 045997 24 SVKEGDTVLLPE-YGGAEVKLGDKKYHLYEDESILGTL 60 (63)
Q Consensus 24 ~vk~GD~Vl~~~-y~g~ev~~~g~~y~i~~e~DIla~i 60 (63)
.+++||+|.|-. |+-..+..=+ .|++++.+.|...+
T Consensus 316 ~~~vGd~v~~~p~h~c~t~~~~~-~~~vv~~~~v~~~w 352 (358)
T cd06819 316 PLKIGDRLELVPGHCDPTVNLHD-WYVGVRGGVVEDVW 352 (358)
T ss_pred CCCCCCEEEEECCCcCccccccC-EEEEEECCEEEEEE
Confidence 589999999955 7776665443 46667777666655
No 202
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=38.63 E-value=25 Score=21.57 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=14.2
Q ss_pred eeccCCCEEEeCC-CCceEEEE
Q 045997 23 VSVKEGDTVLLPE-YGGAEVKL 43 (63)
Q Consensus 23 ~~vk~GD~Vl~~~-y~g~ev~~ 43 (63)
+.|++||+|.|.. -.+..+..
T Consensus 17 v~V~~GdTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 17 IRAAPGDTVTFVPTDKGHNVET 38 (116)
T ss_pred EEECCCCEEEEEECCCCeeEEE
Confidence 4899999999943 23444443
No 203
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=38.24 E-value=59 Score=24.35 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=18.1
Q ss_pred CCeEEeeeccCCCEEEeCCCCceEEE
Q 045997 17 NGKFIPVSVKEGDTVLLPEYGGAEVK 42 (63)
Q Consensus 17 ~G~~~p~~vk~GD~Vl~~~y~g~ev~ 42 (63)
+|+-.|...++||.| |+|+.+.
T Consensus 106 TGEs~pv~k~~g~~v----~aGt~v~ 127 (536)
T TIGR01512 106 TGESVPVEKAPGDEV----FAGAINL 127 (536)
T ss_pred CCCCCcEEeCCCCEE----EeeeEEC
Confidence 799999999999987 5777554
No 204
>PRK12426 elongation factor P; Provisional
Probab=37.71 E-value=90 Score=20.82 Aligned_cols=40 Identities=10% Similarity=0.193 Sum_probs=29.1
Q ss_pred CCCeEEeeeccCCCEEEeCCCCceEEEE---CCEEEEEEecCC
Q 045997 16 VNGKFIPVSVKEGDTVLLPEYGGAEVKL---GDKKYHLYEDES 55 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~Vl~~~y~g~ev~~---~g~~y~i~~e~D 55 (63)
.+|......++.||++--....-.+.++ ||..|+||..+.
T Consensus 45 ~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~~~~FMd~et 87 (185)
T PRK12426 45 DSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGDEYLFLDLGN 87 (185)
T ss_pred CCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCCeEEEecCCC
Confidence 5888888899999998765555455443 678888887643
No 205
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=37.70 E-value=55 Score=20.38 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=23.0
Q ss_pred eeccCCCEEEeCC-CCce-----EEEE-CCEEEEEEecCCEE
Q 045997 23 VSVKEGDTVLLPE-YGGA-----EVKL-GDKKYHLYEDESIL 57 (63)
Q Consensus 23 ~~vk~GD~Vl~~~-y~g~-----ev~~-~g~~y~i~~e~DIl 57 (63)
..+++||.|+|-. -.+. ..-+ -+-.+.+++++++-
T Consensus 41 ~~f~~GDlvLflpt~~~~~~~~~~~af~~~~~~YFL~~~s~~ 82 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHNNKKQPWAAFNVGCPHYFLHEDSIA 82 (129)
T ss_pred ecCCCCCEEEEEecCCCCccccceEEeeCCCceEEEecccch
Confidence 3799999999944 2222 2333 26677778888774
No 206
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=37.69 E-value=28 Score=19.06 Aligned_cols=27 Identities=22% Similarity=0.519 Sum_probs=13.5
Q ss_pred CeEEeeeccCCCEEEeCCC--CceEEEEC
Q 045997 18 GKFIPVSVKEGDTVLLPEY--GGAEVKLG 44 (63)
Q Consensus 18 G~~~p~~vk~GD~Vl~~~y--~g~ev~~~ 44 (63)
+...|-.+.-|-.|..|.| .|..|++|
T Consensus 19 ~~~K~A~letG~~i~VP~FI~~Gd~I~V~ 47 (56)
T cd05794 19 SGTKPATLETGAEVQVPLFIKEGEKIKVD 47 (56)
T ss_pred CCcceEEECCCCEEEcCCeecCCCEEEEE
Confidence 3344555555555555554 24444443
No 207
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=37.31 E-value=25 Score=21.38 Aligned_cols=18 Identities=28% Similarity=0.713 Sum_probs=14.4
Q ss_pred eEEeeeccCCCEEEeCCC
Q 045997 19 KFIPVSVKEGDTVLLPEY 36 (63)
Q Consensus 19 ~~~p~~vk~GD~Vl~~~y 36 (63)
..+++.+++||.++|..+
T Consensus 178 ~~~~~~~~~Gdvl~~~~~ 195 (211)
T PF05721_consen 178 EWVPVPMKAGDVLFFHSR 195 (211)
T ss_dssp GCEEE-BSTTEEEEEETT
T ss_pred ceEEeecCCCeEEEEcCC
Confidence 457889999999999874
No 208
>PRK04542 elongation factor P; Provisional
Probab=37.29 E-value=90 Score=20.87 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=28.9
Q ss_pred CCCeEEeeeccCCCEEEeCCCCceEEEE---CCEEEEEEecC
Q 045997 16 VNGKFIPVSVKEGDTVLLPEYGGAEVKL---GDKKYHLYEDE 54 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~Vl~~~y~g~ev~~---~g~~y~i~~e~ 54 (63)
.+|..+-..++.||+|--....-.+.++ ||..|+||..+
T Consensus 47 ~tG~~~e~tfrs~ekve~a~~~~~~~qylY~dg~~~~FMd~e 88 (189)
T PRK04542 47 RTGLKVEERFKGDDILDTVDLTRRPVTFSYIDGDEYVFMDNE 88 (189)
T ss_pred CCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCCEEEEecCC
Confidence 5788888899999998776655554443 57888888765
No 209
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=37.05 E-value=90 Score=19.67 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=14.0
Q ss_pred eccCCCEEEeCCCCceEEEEC
Q 045997 24 SVKEGDTVLLPEYGGAEVKLG 44 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~~ 44 (63)
++++||+|.+..+.|.-.+++
T Consensus 60 pf~vGD~I~i~~~~G~V~~I~ 80 (206)
T PF00924_consen 60 PFKVGDRIEIGGVEGRVEEIG 80 (206)
T ss_dssp SS-TT-EEESSS-EEEEEEE-
T ss_pred CccCCCEEEEEEeehHHHhcC
Confidence 789999999999988655554
No 210
>PF06236 MelC1: Tyrosinase co-factor MelC1; InterPro: IPR010928 This family consists of several tyrosinase co-factor MELC1 proteins from a number of Streptomyces species. The melanin operon (melC) of Streptomyces antibioticus contains two genes, melC1 and melC2 (apotyrosinase). It is thought that MelC1 forms a transient binary complex with the downstream apotyrosinase MelC2 to facilitate the incorporation of copper ion and the secretion of tyrosinase indicating that MelC1 is a chaperone for the apotyrosinase MelC2 [].; GO: 0005507 copper ion binding, 0042438 melanin biosynthetic process; PDB: 1WX4_B 2ZWD_B 2ZMZ_B 1WX2_B 1WX5_D 3AWX_B 3AWS_B 2ZMY_B 3AX0_B 2ZWG_B ....
Probab=36.98 E-value=51 Score=20.95 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=13.8
Q ss_pred ceEEEECCEEEEEEecCC
Q 045997 38 GAEVKLGDKKYHLYEDES 55 (63)
Q Consensus 38 g~ev~~~g~~y~i~~e~D 55 (63)
+.+|.+||.++.+||..|
T Consensus 70 ~~~V~IDGr~LhvMr~AD 87 (125)
T PF06236_consen 70 GYEVTIDGRPLHVMRRAD 87 (125)
T ss_dssp SEEEEETTEEE-EEE-TT
T ss_pred ceEEEECCeEeeeEEcCC
Confidence 458999999999999876
No 211
>PRK14578 elongation factor P; Provisional
Probab=36.78 E-value=1e+02 Score=20.59 Aligned_cols=40 Identities=13% Similarity=0.291 Sum_probs=28.4
Q ss_pred CCCeEEeeeccCCCEEEeCCCCceEEEE---CCEEEEEEecCC
Q 045997 16 VNGKFIPVSVKEGDTVLLPEYGGAEVKL---GDKKYHLYEDES 55 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~Vl~~~y~g~ev~~---~g~~y~i~~e~D 55 (63)
.+|..+...++.||++--....-.+.++ ||+.|+||..+.
T Consensus 47 ~tG~~~e~tf~s~d~ve~a~ve~~~~qylY~dg~~~~FMD~et 89 (187)
T PRK14578 47 LTGQVLEKTFRSGDKVEEADFERHKGQFLYADGDRGVFMDLET 89 (187)
T ss_pred CCCCEEEEEECCCCEEEEeEEEEeEeEEEEeCCCEEEEecCCC
Confidence 5888888899999988765544444332 678888887653
No 212
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=36.25 E-value=12 Score=22.38 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=10.6
Q ss_pred EEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 6 VVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 6 VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
|+.+.+|... ...+++||+|.+.
T Consensus 85 vLE~~aG~~~------~~~i~~Gd~v~~~ 107 (108)
T PF02643_consen 85 VLELPAGWFE------KLGIKVGDRVRIE 107 (108)
T ss_dssp EEEEETTHHH------HHT--TT-EEE--
T ss_pred EEEcCCCchh------hcCCCCCCEEEec
Confidence 5555555432 2358999998875
No 213
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=36.22 E-value=22 Score=21.09 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=9.4
Q ss_pred eccCCCEEEeCCCCce
Q 045997 24 SVKEGDTVLLPEYGGA 39 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ 39 (63)
-+.+||.|.|+..+++
T Consensus 27 Gl~vGD~VnFsnsa~t 42 (83)
T PF12195_consen 27 GLFVGDFVNFSNSAVT 42 (83)
T ss_dssp ---TT-EEEEES-SST
T ss_pred ceeecceEEEeccccc
Confidence 5899999999997753
No 214
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=36.15 E-value=20 Score=19.96 Aligned_cols=13 Identities=54% Similarity=0.871 Sum_probs=7.9
Q ss_pred eccCCCEEEeCCC
Q 045997 24 SVKEGDTVLLPEY 36 (63)
Q Consensus 24 ~vk~GD~Vl~~~y 36 (63)
-++.||+|.+.+|
T Consensus 53 G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 53 GAKEGDTVRIGDY 65 (69)
T ss_dssp T--TT-EEEETTE
T ss_pred CCCCCCEEEEcCE
Confidence 4889999998765
No 215
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=36.07 E-value=84 Score=19.67 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=28.2
Q ss_pred CCCeEEeeeccCCCEEEeCCCCc---eEEEECCEEEEEEecCC
Q 045997 16 VNGKFIPVSVKEGDTVLLPEYGG---AEVKLGDKKYHLYEDES 55 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~Vl~~~y~g---~ev~~~g~~y~i~~e~D 55 (63)
.+|..+....+.+|+|--+...- +=+-.+|..|.||..++
T Consensus 47 ~tG~~~e~~f~~~~kve~a~ie~~~~q~lY~dg~~~~FMD~et 89 (131)
T COG0231 47 FTGKKVEKTFKADDKVEVAIVERKTAQYLYIDGDFYVFMDLET 89 (131)
T ss_pred cCCCEEEEEEcCCCEEEEeEEeeeeEEEEEcCCCeEEEccCCC
Confidence 57888888899999886655443 33344788888887553
No 216
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=35.80 E-value=85 Score=20.76 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=8.9
Q ss_pred eccCCCEEEeC
Q 045997 24 SVKEGDTVLLP 34 (63)
Q Consensus 24 ~vk~GD~Vl~~ 34 (63)
.+++||+|+..
T Consensus 77 ~~~~Gd~V~~~ 87 (329)
T cd08294 77 KFPVGTIVVAS 87 (329)
T ss_pred CCCCCCEEEee
Confidence 57899999863
No 217
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=35.79 E-value=35 Score=25.09 Aligned_cols=19 Identities=42% Similarity=0.517 Sum_probs=14.2
Q ss_pred CCCeEEee-eccCCCEEEeC
Q 045997 16 VNGKFIPV-SVKEGDTVLLP 34 (63)
Q Consensus 16 ~~G~~~p~-~vk~GD~Vl~~ 34 (63)
++|+.++. ++|+||+|+..
T Consensus 306 ~dG~~vsVt~Lk~GD~VL~~ 325 (344)
T PRK02290 306 PDGKPVSVVDLKPGDEVLGY 325 (344)
T ss_pred CCCCEeeeeecCCCCEEEEE
Confidence 35665555 99999999963
No 218
>PRK03760 hypothetical protein; Provisional
Probab=35.73 E-value=31 Score=21.15 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=9.5
Q ss_pred eeeccCCCEEEeC
Q 045997 22 PVSVKEGDTVLLP 34 (63)
Q Consensus 22 p~~vk~GD~Vl~~ 34 (63)
...+++||+|.|.
T Consensus 103 ~~gi~~Gd~v~~~ 115 (117)
T PRK03760 103 VLKVEVGDEIEWI 115 (117)
T ss_pred HcCCCCCCEEEEe
Confidence 3458889988764
No 219
>CHL00010 infA translation initiation factor 1
Probab=35.71 E-value=31 Score=19.67 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=10.7
Q ss_pred eccCCCEEEeC--CCC
Q 045997 24 SVKEGDTVLLP--EYG 37 (63)
Q Consensus 24 ~vk~GD~Vl~~--~y~ 37 (63)
.+.+||.|.|. .+.
T Consensus 46 ~~~vGD~V~ve~~~~~ 61 (78)
T CHL00010 46 RILPGDRVKVELSPYD 61 (78)
T ss_pred ccCCCCEEEEEEcccC
Confidence 46789999998 553
No 220
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=35.71 E-value=54 Score=19.77 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=18.7
Q ss_pred eccCCCEEEeCCCCceEEEECCEEEEEEecCC
Q 045997 24 SVKEGDTVLLPEYGGAEVKLGDKKYHLYEDES 55 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~D 55 (63)
.+++||.|.+... +...++.=.+-.+++.+|
T Consensus 64 ~l~~Gd~v~v~~~-~~~~~Y~V~~~~~v~~~~ 94 (126)
T cd06166 64 EVEKGDEIKVTTK-NGTYKYKITSIFVVEPTD 94 (126)
T ss_pred HCCCCCEEEEEEC-CEEEEEEEEEEEEECCCc
Confidence 7899999999775 444444322333444444
No 221
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=35.53 E-value=77 Score=17.67 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=17.9
Q ss_pred eccCCCEEEeCCCCc--eEEEECCEEEE
Q 045997 24 SVKEGDTVLLPEYGG--AEVKLGDKKYH 49 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g--~ev~~~g~~y~ 49 (63)
.+++||.+-+.+... -++.++|....
T Consensus 28 ~L~~Gdvi~L~~~~~~~v~l~v~g~~~~ 55 (77)
T TIGR02480 28 KLGEGSVIELDKLAGEPLDILVNGRLIA 55 (77)
T ss_pred cCCCCCEEEcCCCCCCcEEEEECCEEEE
Confidence 688999999886444 45566776443
No 222
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=35.39 E-value=36 Score=14.74 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=10.4
Q ss_pred ccCCCEEEeCC--CCce
Q 045997 25 VKEGDTVLLPE--YGGA 39 (63)
Q Consensus 25 vk~GD~Vl~~~--y~g~ 39 (63)
+++||.|.+-. |+|.
T Consensus 2 ~~~G~~V~I~~G~~~g~ 18 (28)
T smart00739 2 FEVGDTVRVIAGPFKGK 18 (28)
T ss_pred CCCCCEEEEeECCCCCc
Confidence 57888888744 6654
No 223
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=35.01 E-value=28 Score=21.99 Aligned_cols=14 Identities=50% Similarity=0.558 Sum_probs=11.4
Q ss_pred eeccCCCEEEeCCC
Q 045997 23 VSVKEGDTVLLPEY 36 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y 36 (63)
+.|++||+|-|-..
T Consensus 56 v~v~pGDTVtw~~~ 69 (128)
T COG3794 56 VTVKPGDTVTWVNT 69 (128)
T ss_pred EEECCCCEEEEEEC
Confidence 48999999999553
No 224
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=34.94 E-value=49 Score=20.96 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=20.8
Q ss_pred eeccCCCEEEeCCC-----CceEEEECCEEEEEEecCCEE
Q 045997 23 VSVKEGDTVLLPEY-----GGAEVKLGDKKYHLYEDESIL 57 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y-----~g~ev~~~g~~y~i~~e~DIl 57 (63)
.++|+|.++++..- -.+.+.+.+ +--|++++|||
T Consensus 6 l~LKp~ERi~INGAVirndrr~~l~i~n-~a~~Lre~dil 44 (132)
T PRK00794 6 LSLKPGERIFINGAVLRNDRKVSLELLN-DATFLRERDVL 44 (132)
T ss_pred EEecCCCEEEEcCeEEEeCCceEEEEec-CCceechhhcC
Confidence 57899999987531 123333433 45667777775
No 225
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=34.78 E-value=88 Score=17.61 Aligned_cols=32 Identities=34% Similarity=0.404 Sum_probs=20.5
Q ss_pred eEEEEEECCCe-----eC-----------CCCeEE----eeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGA-----RD-----------VNGKFI----PVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~-----~~-----------~~G~~~----p~~vk~GD~Vl~~ 34 (63)
+|.|.|+-++. .. .+|-++ +..+++||+|-+.
T Consensus 3 ~GvVTa~~~~~~~~GffiQd~~~d~~~~ts~gifV~~~~~~~~~~Gd~V~vt 54 (78)
T cd04486 3 EGVVTAVFSGGGLGGFYIQDEDGDGDPATSEGIFVYTGSGADVAVGDLVRVT 54 (78)
T ss_pred EEEEEEEcCCCCcCEEEEEcCCCCCCCcccceEEEecCCCCCCCCCCEEEEE
Confidence 57788876642 10 235555 4568999999873
No 226
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=34.64 E-value=32 Score=22.91 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=15.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
-|+|..++-+..+.+ ...+.+||+|+.+-
T Consensus 175 dG~v~~~~~a~Wn~~----~~~l~PG~~I~Vp~ 203 (229)
T PF06251_consen 175 DGSVQKVPVAYWNNQ----HQELAPGATIYVPF 203 (229)
T ss_dssp TS-EEEEE-STTT------EEE--TT-EEEE-B
T ss_pred CCcEEEcceehhccC----CCCCCCCCEEEEcC
Confidence 377888887765332 35799999999764
No 227
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=34.57 E-value=56 Score=20.95 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=22.4
Q ss_pred eeccCCCEEEeCCCCceEEEECCEEEEEEecCCEE
Q 045997 23 VSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESIL 57 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIl 57 (63)
..++.||.+++..- |..--..|..++|+....|+
T Consensus 74 ~~~q~GDI~I~g~~-g~S~G~~GHtgif~~~~~iI 107 (145)
T PF05382_consen 74 WNLQRGDIFIWGRR-GNSAGAGGHTGIFMDNDTII 107 (145)
T ss_pred ccccCCCEEEEcCC-CCCCCCCCeEEEEeCCCcEE
Confidence 37899999998553 11111357777777777665
No 228
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=34.25 E-value=81 Score=23.67 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=18.1
Q ss_pred CCeEEeeeccCCCEEEeCCCCceEEE
Q 045997 17 NGKFIPVSVKEGDTVLLPEYGGAEVK 42 (63)
Q Consensus 17 ~G~~~p~~vk~GD~Vl~~~y~g~ev~ 42 (63)
+|+-.|...++||.| |+|+.+.
T Consensus 107 TGEs~pv~k~~g~~v----~aGt~v~ 128 (556)
T TIGR01525 107 TGESMPVEKKEGDEV----FAGTING 128 (556)
T ss_pred cCCCCCEecCCcCEE----eeceEEC
Confidence 899999999999986 4777664
No 229
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=34.09 E-value=33 Score=28.69 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=24.5
Q ss_pred eccCCCEEEeCCCCceEEEEC---------CEEEEEEecCCEE
Q 045997 24 SVKEGDTVLLPEYGGAEVKLG---------DKKYHLYEDESIL 57 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~~---------g~~y~i~~e~DIl 57 (63)
++++||+|-+..+.|+-.+++ +.+.++++.+.++
T Consensus 935 PfrVGD~I~I~~~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~i 977 (1109)
T PRK10929 935 PIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFI 977 (1109)
T ss_pred CCCCCCEEEECCEEEEEEEEeeeEEEEEeCCCCEEEEEChhhh
Confidence 799999999999888644433 4556666666654
No 230
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]
Probab=33.85 E-value=66 Score=22.60 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=24.3
Q ss_pred eccCCCEEEeCCCC-c--eEEEEC--CEEEEEEecCC
Q 045997 24 SVKEGDTVLLPEYG-G--AEVKLG--DKKYHLYEDES 55 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~-g--~ev~~~--g~~y~i~~e~D 55 (63)
.+|.||+|-|+--+ | +++.++ +...+|.|..|
T Consensus 199 nlkaGq~Vki~~naqG~Vt~L~le~~n~~vlF~RQ~D 235 (242)
T COG3061 199 NLKAGQKVKISLNAQGRVTELRLETGNNQVLFTRQSD 235 (242)
T ss_pred hccCCCEEEEEEcCccceEEEEeccCCceEEEEEcCC
Confidence 69999999997733 4 566664 34888898877
No 231
>PRK06033 hypothetical protein; Validated
Probab=33.85 E-value=86 Score=18.07 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=17.9
Q ss_pred eccCCCEEEeCCCCc--eEEEECCEEEE
Q 045997 24 SVKEGDTVLLPEYGG--AEVKLGDKKYH 49 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g--~ev~~~g~~y~ 49 (63)
.+++||.+-+.+... -++.++|....
T Consensus 27 ~L~~GDVI~L~~~~~~~v~v~V~~~~~f 54 (83)
T PRK06033 27 RMGRGAVIPLDATEADEVWILANNHPIA 54 (83)
T ss_pred CCCCCCEEEeCCCCCCcEEEEECCEEEE
Confidence 678899888877544 45566776544
No 232
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=33.70 E-value=84 Score=21.82 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=24.6
Q ss_pred eccCCCEEEeCC-CCceEEEECCEEEEEEecCCEEEEe
Q 045997 24 SVKEGDTVLLPE-YGGAEVKLGDKKYHLYEDESILGTL 60 (63)
Q Consensus 24 ~vk~GD~Vl~~~-y~g~ev~~~g~~y~i~~e~DIla~i 60 (63)
.+++||+|.|-. |+-..+..=+ .|++++.+.+..++
T Consensus 311 ~~~vGd~i~~~p~h~c~t~~~~~-~~~~~~~~~v~~~w 347 (353)
T cd06820 311 LPRVGDRVRVVPNHACVVVNLVD-EVYLVDGGEVVETW 347 (353)
T ss_pred CCCCCCEEEEECCCcCcchhcCC-EEEEEECCEEEEEE
Confidence 478999998855 7665555443 47777777666654
No 233
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=33.55 E-value=72 Score=22.25 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=22.4
Q ss_pred eccCCCEEEeCCCCceEEEE---------CCEEEEEEecCCEE
Q 045997 24 SVKEGDTVLLPEYGGAEVKL---------GDKKYHLYEDESIL 57 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~---------~g~~y~i~~e~DIl 57 (63)
++++||.|.++.+.|+-.++ .+.+.++++.+.++
T Consensus 129 pf~vGD~I~i~~~~G~V~~I~~r~T~i~t~d~~~v~IPNs~~~ 171 (286)
T PRK10334 129 PFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKII 171 (286)
T ss_pred CCCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEcchHhc
Confidence 78999999999888853333 24445555555443
No 234
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=33.10 E-value=40 Score=18.03 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=12.3
Q ss_pred eeccCCCEEEeCCCCceEEE
Q 045997 23 VSVKEGDTVLLPEYGGAEVK 42 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~g~ev~ 42 (63)
..+.+||+|.|+-+ |..+.
T Consensus 17 ~pv~~Gd~i~~~~~-~~~~~ 35 (64)
T PF02933_consen 17 RPVTKGDTIVFPFF-GQALP 35 (64)
T ss_dssp EEEETT-EEEEEET-TEEEE
T ss_pred CCccCCCEEEEEeC-CcEEE
Confidence 37889999998654 44443
No 235
>PRK05610 rpsQ 30S ribosomal protein S17; Reviewed
Probab=32.94 E-value=23 Score=20.73 Aligned_cols=12 Identities=42% Similarity=0.481 Sum_probs=10.8
Q ss_pred eccCCCEEEeCC
Q 045997 24 SVKEGDTVLLPE 35 (63)
Q Consensus 24 ~vk~GD~Vl~~~ 35 (63)
.+++||.|.+.+
T Consensus 53 ~~k~GD~V~I~e 64 (84)
T PRK05610 53 EAKIGDVVRIME 64 (84)
T ss_pred CCCCCCEEEEEE
Confidence 699999999976
No 236
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=32.94 E-value=55 Score=21.09 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=16.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+.+|++.. ..++||+|+--
T Consensus 66 ~G~v~~~g~~~~---------~~~~G~~V~~~ 88 (323)
T cd08241 66 AGVVEAVGEGVT---------GFKVGDRVVAL 88 (323)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEEe
Confidence 478888886431 36889999864
No 237
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=32.73 E-value=71 Score=17.68 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=14.0
Q ss_pred ccCCCEEEeCC-CCceEEEEC
Q 045997 25 VKEGDTVLLPE-YGGAEVKLG 44 (63)
Q Consensus 25 vk~GD~Vl~~~-y~g~ev~~~ 44 (63)
.++||.+-|.+ +.|+-.++.
T Consensus 4 a~vGdiIefk~g~~G~V~kv~ 24 (57)
T PF09953_consen 4 AKVGDIIEFKDGFTGIVEKVY 24 (57)
T ss_pred cccCcEEEEcCCcEEEEEEEe
Confidence 57899999966 666655543
No 238
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=32.72 E-value=1.2e+02 Score=21.42 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=17.2
Q ss_pred EEeeeccCCCEEEeCC----CCceEEEEC
Q 045997 20 FIPVSVKEGDTVLLPE----YGGAEVKLG 44 (63)
Q Consensus 20 ~~p~~vk~GD~Vl~~~----y~g~ev~~~ 44 (63)
.+-..+++||+|+... ..|+.|+..
T Consensus 344 ~V~~GL~~Gd~VV~~g~~~l~~G~~V~~~ 372 (385)
T PRK09859 344 VVTSGLQAGDRVIVSGLQRIRPGIKARAI 372 (385)
T ss_pred EEeCCCCCCCEEEEcChhcCCCcCEeeec
Confidence 3444789999998876 446777653
No 239
>PF11901 DUF3421: Protein of unknown function (DUF3421); InterPro: IPR024518 This domain of unknown function is found in the fish toxin Natterin [] and in uncharacterised proteins.
Probab=32.53 E-value=41 Score=20.47 Aligned_cols=38 Identities=29% Similarity=0.554 Sum_probs=28.2
Q ss_pred EEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEE
Q 045997 4 GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKL 43 (63)
Q Consensus 4 G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~ 43 (63)
|+.+-||-.. -+|...|-.+.++..+.|=.|.|.|+.+
T Consensus 81 Ge~lyIgR~~--~~g~~~~GKv~~s~~~~~ip~gG~E~~~ 118 (119)
T PF11901_consen 81 GEPLYIGRAH--YNGSLIPGKVHPSHKCCYIPYGGKEISF 118 (119)
T ss_pred CCEEEEEEEE--ECCeeEEEEEEcCCCEEEEEECCEEEEc
Confidence 4445555443 3678888889999999999999988865
No 240
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=32.42 E-value=56 Score=20.74 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=21.0
Q ss_pred eeccCCCEEEeCCC------CceEEEECCEEEEEEecCCEE
Q 045997 23 VSVKEGDTVLLPEY------GGAEVKLGDKKYHLYEDESIL 57 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y------~g~ev~~~g~~y~i~~e~DIl 57 (63)
.++|+|.++++..- -.+.+.+.+ +--|+|+.|||
T Consensus 5 l~LKP~ERi~INGaVi~Ngdrr~~l~i~n-~a~iLre~dil 44 (131)
T PRK12791 5 VELKPFERIVIGQSVITNSDTRARFLIDG-DAPILREKDIL 44 (131)
T ss_pred EEeCCCCEEEEcCEEEEeCCcceEEEEeC-CCceehhhccC
Confidence 57889998887541 123444432 25667888876
No 241
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.37 E-value=63 Score=25.76 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=18.3
Q ss_pred eeccCCCEEEeCCCC--ceEEEECC
Q 045997 23 VSVKEGDTVLLPEYG--GAEVKLGD 45 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~--g~ev~~~g 45 (63)
.++++||+|.++.++ |+-+.+++
T Consensus 635 ~~~~~Gd~V~v~~~~~~g~v~~i~~ 659 (782)
T PRK00409 635 EELKVGDEVKYLSLGQKGEVLSIPD 659 (782)
T ss_pred cCCCCCCEEEEccCCceEEEEEEcC
Confidence 469999999999966 66677754
No 242
>TIGR02178 yeiP elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.
Probab=32.16 E-value=1.1e+02 Score=20.47 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=28.1
Q ss_pred CCCeEEeeeccCCCEEEeCCCCceEEEE---CCEEEEEEecCC
Q 045997 16 VNGKFIPVSVKEGDTVLLPEYGGAEVKL---GDKKYHLYEDES 55 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~Vl~~~y~g~ev~~---~g~~y~i~~e~D 55 (63)
.+|...-..++.||+|--....-.+.++ ||..|+||..++
T Consensus 45 ~tG~~~e~tf~s~e~ve~a~le~~~~qylY~dg~~~~FMD~et 87 (186)
T TIGR02178 45 PTGSKVEERFKADDMLDTVELLRREASFSYKDGEEYVFMDEED 87 (186)
T ss_pred CCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCCeEEEccCCC
Confidence 5788888889999988765555444443 678888887643
No 243
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=32.14 E-value=93 Score=21.78 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=24.5
Q ss_pred eccCCCEEEeC-CCCceEEEECCEEEEEEecCCEE-EEe
Q 045997 24 SVKEGDTVLLP-EYGGAEVKLGDKKYHLYEDESIL-GTL 60 (63)
Q Consensus 24 ~vk~GD~Vl~~-~y~g~ev~~~g~~y~i~~e~DIl-a~i 60 (63)
.+|+||+|.|- .|+-..+..- ..|++++.+.+. .++
T Consensus 331 ~~~vGd~v~~~p~H~c~t~~~~-~~~~~v~~~~~~~~~w 368 (374)
T cd06812 331 DLPIGTRLRILPNHACATAAQH-DHYHVLDGEGVVQATW 368 (374)
T ss_pred CCCCCCEEEEeCCccCcchhcC-CEEEEEeCCCEEEEEe
Confidence 58999999774 4766555543 357778877666 554
No 244
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=31.94 E-value=44 Score=24.65 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=14.0
Q ss_pred CCCeEEee-eccCCCEEEe
Q 045997 16 VNGKFIPV-SVKEGDTVLL 33 (63)
Q Consensus 16 ~~G~~~p~-~vk~GD~Vl~ 33 (63)
++|+.++. ++|+||+|+.
T Consensus 316 p~G~~vsVt~Lk~GD~vL~ 334 (354)
T PF01959_consen 316 PDGEPVSVTELKPGDEVLV 334 (354)
T ss_pred CCCCEeeeeecCCCCEEEE
Confidence 35665555 9999999986
No 245
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=31.88 E-value=67 Score=19.80 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=15.0
Q ss_pred eccCCCEEEeCCCCceEEEECCEEEEEEe
Q 045997 24 SVKEGDTVLLPEYGGAEVKLGDKKYHLYE 52 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~ 52 (63)
.+|+||+|-|. +..++..|.+.+
T Consensus 88 ~lk~G~~V~F~------~~~~~~~~~i~~ 110 (115)
T PRK09838 88 EIKTGDKVAFN------FVQQGNLSLLQD 110 (115)
T ss_pred cCCCCCEEEEE------EEEcCCcEEEEE
Confidence 57888888863 445566665543
No 246
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=31.87 E-value=38 Score=21.17 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=8.2
Q ss_pred CeEEeeeccCCCEEE
Q 045997 18 GKFIPVSVKEGDTVL 32 (63)
Q Consensus 18 G~~~p~~vk~GD~Vl 32 (63)
|.+...-|++||+|-
T Consensus 79 Gtv~~~~V~vGd~V~ 93 (140)
T COG0511 79 GTVYKPFVEVGDTVK 93 (140)
T ss_pred eEEEEEeeccCCEEc
Confidence 444445566666653
No 247
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=31.70 E-value=31 Score=18.15 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=9.6
Q ss_pred eccCCCEEEeCC
Q 045997 24 SVKEGDTVLLPE 35 (63)
Q Consensus 24 ~vk~GD~Vl~~~ 35 (63)
.+.+||.|++..
T Consensus 37 ~~~VGD~V~~~~ 48 (68)
T cd04466 37 PPAVGDRVEFEP 48 (68)
T ss_pred CCCCCcEEEEEE
Confidence 468999999854
No 248
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=31.52 E-value=36 Score=17.17 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=12.6
Q ss_pred CCceEEEECCEEEEEEecC
Q 045997 36 YGGAEVKLGDKKYHLYEDE 54 (63)
Q Consensus 36 y~g~ev~~~g~~y~i~~e~ 54 (63)
-+....+++|+.|.|.++.
T Consensus 13 ~~~~~~~y~G~~Y~FCS~~ 31 (47)
T PF04945_consen 13 NAAYSVEYNGRTYYFCSEG 31 (47)
T ss_dssp ---EEEEETTEEEEESSHH
T ss_pred CccEEEEECCEEEEEcCHH
Confidence 3445678899999988753
No 249
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=31.41 E-value=62 Score=18.53 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=11.1
Q ss_pred eccCCCEEEeCCCC
Q 045997 24 SVKEGDTVLLPEYG 37 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~ 37 (63)
.+++||.|++..-.
T Consensus 2 ~~~vGD~V~v~~~~ 15 (119)
T PF01426_consen 2 TYKVGDFVYVKPDD 15 (119)
T ss_dssp EEETTSEEEEECTS
T ss_pred EEeCCCEEEEeCCC
Confidence 47899999987755
No 250
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=31.02 E-value=30 Score=21.28 Aligned_cols=12 Identities=17% Similarity=0.388 Sum_probs=10.5
Q ss_pred eccCCCEEEeCC
Q 045997 24 SVKEGDTVLLPE 35 (63)
Q Consensus 24 ~vk~GD~Vl~~~ 35 (63)
++++||.|+|.-
T Consensus 76 ~~qpGDlvff~~ 87 (134)
T TIGR02219 76 AAQPGDVLVFRW 87 (134)
T ss_pred cCCCCCEEEEee
Confidence 789999999963
No 251
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=30.82 E-value=74 Score=19.19 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=13.5
Q ss_pred eccCCCEEEeCCCCceEEEE
Q 045997 24 SVKEGDTVLLPEYGGAEVKL 43 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~ 43 (63)
.+++||.|.+... +...++
T Consensus 61 ~l~~Gd~i~v~~~-~~~~~Y 79 (127)
T cd05828 61 ELEPGDIITLQTL-GGTYTY 79 (127)
T ss_pred cCCCCCEEEEEEC-CEEEEE
Confidence 6889999988765 544444
No 252
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=30.82 E-value=85 Score=21.42 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=20.3
Q ss_pred eeeccCCCEEEeCCC---CceEEEECCEEEEEE
Q 045997 22 PVSVKEGDTVLLPEY---GGAEVKLGDKKYHLY 51 (63)
Q Consensus 22 p~~vk~GD~Vl~~~y---~g~ev~~~g~~y~i~ 51 (63)
....+.||.|+|+.. .+++|+ .|.+|.++
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pVt-~G~R~~~~ 173 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPVT-RGVRVASF 173 (226)
T ss_pred EEecCCCeEEEECCCCceeeeecc-CccEEEEE
Confidence 445678999999874 355654 57787764
No 253
>cd02558 PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.
Probab=30.77 E-value=66 Score=21.66 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=9.3
Q ss_pred eccCCCEEEeC
Q 045997 24 SVKEGDTVLLP 34 (63)
Q Consensus 24 ~vk~GD~Vl~~ 34 (63)
.++.||+|.+.
T Consensus 16 ~l~~gd~i~~~ 26 (246)
T cd02558 16 PYRPGTFVWYY 26 (246)
T ss_pred eecCCCEEEEe
Confidence 89999999764
No 254
>PRK12288 GTPase RsgA; Reviewed
Probab=30.66 E-value=1.1e+02 Score=22.02 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=23.1
Q ss_pred ceEEEEEECCCeeC---CCCeEEee-------eccCCCEEEeCCC
Q 045997 2 ISGKVVAVGPGARD---VNGKFIPV-------SVKEGDTVLLPEY 36 (63)
Q Consensus 2 ~~G~VvAVG~G~~~---~~G~~~p~-------~vk~GD~Vl~~~y 36 (63)
..|+|++.=.+.+. ++|++... .+.+||+|.|...
T Consensus 40 ~~g~Vi~~~~~~~~v~~~~g~~~~~~~~g~~~~~~vGD~V~~~~~ 84 (347)
T PRK12288 40 QEGIVISRFGQHADVEAADGEVHRCNIRRTIRSLVTGDRVVWRPG 84 (347)
T ss_pred cceEEEEEECCEEEEEeCCCcEEEEEecccCCCCCCCcEEEEEeC
Confidence 46888887766542 45554322 3788999999644
No 255
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=30.41 E-value=48 Score=18.17 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=15.7
Q ss_pred CCCCeEEee-eccCCCEEEeCCC
Q 045997 15 DVNGKFIPV-SVKEGDTVLLPEY 36 (63)
Q Consensus 15 ~~~G~~~p~-~vk~GD~Vl~~~y 36 (63)
..+|..+|+ ++++||.|+-.+.
T Consensus 11 ~~~gg~~~i~~l~~g~~V~~~~~ 33 (100)
T smart00306 11 TEDGGIKKIEELEEGDKVLALDE 33 (100)
T ss_pred cCCCCEEEHHHcCCCCEEEEecC
Confidence 355556666 8899999986654
No 256
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=30.23 E-value=46 Score=18.30 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=13.3
Q ss_pred eccCCCEEEeCCCCceEE--EE-CCEEEE
Q 045997 24 SVKEGDTVLLPEYGGAEV--KL-GDKKYH 49 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev--~~-~g~~y~ 49 (63)
++++||+|-+.+-.|... .+ .|..|.
T Consensus 5 pf~~GdrVQlTD~Kgr~~Ti~L~~G~~fh 33 (54)
T PF14801_consen 5 PFRAGDRVQLTDPKGRKHTITLEPGGEFH 33 (54)
T ss_dssp S--TT-EEEEEETT--EEEEE--TT-EEE
T ss_pred CCCCCCEEEEccCCCCeeeEEECCCCeEE
Confidence 689999999988887644 33 355553
No 257
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=30.13 E-value=54 Score=22.25 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=17.5
Q ss_pred EEEEECC-CeeCCCCeEEeeeccCCCEEEeCCC
Q 045997 5 KVVAVGP-GARDVNGKFIPVSVKEGDTVLLPEY 36 (63)
Q Consensus 5 ~VvAVG~-G~~~~~G~~~p~~vk~GD~Vl~~~y 36 (63)
.|+..|. |..+ ..+++||.|+..++
T Consensus 85 ~II~~gsaGsl~-------~~l~~GDiVi~~d~ 110 (249)
T TIGR01700 85 TLVVTNAAGGIN-------PEFKVGDLMLIRDH 110 (249)
T ss_pred EEEEecccccCC-------CCCCCCCEEEEhhH
Confidence 4666666 3433 36999999998774
No 258
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.04 E-value=54 Score=19.48 Aligned_cols=14 Identities=43% Similarity=0.525 Sum_probs=10.6
Q ss_pred EeeeccCCCEEEeC
Q 045997 21 IPVSVKEGDTVLLP 34 (63)
Q Consensus 21 ~p~~vk~GD~Vl~~ 34 (63)
++-++++||.|+.-
T Consensus 35 v~~~v~~GdyVLVH 48 (82)
T COG0298 35 VGEEVKVGDYVLVH 48 (82)
T ss_pred ecCccccCCEEEEE
Confidence 34479999999874
No 259
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=29.73 E-value=43 Score=26.62 Aligned_cols=16 Identities=44% Similarity=0.773 Sum_probs=15.2
Q ss_pred CCeEEeeeccCCCEEE
Q 045997 17 NGKFIPVSVKEGDTVL 32 (63)
Q Consensus 17 ~G~~~p~~vk~GD~Vl 32 (63)
+|+-.|...++||.|+
T Consensus 263 TGEs~PV~k~~Gd~V~ 278 (713)
T COG2217 263 TGESLPVEKKPGDEVF 278 (713)
T ss_pred hCCCCCEecCCCCEEe
Confidence 8999999999999997
No 260
>PRK11507 ribosome-associated protein; Provisional
Probab=29.73 E-value=1.1e+02 Score=17.38 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=15.6
Q ss_pred eccCCCEEEeCC----CCceEEEECCEEEEE
Q 045997 24 SVKEGDTVLLPE----YGGAEVKLGDKKYHL 50 (63)
Q Consensus 24 ~vk~GD~Vl~~~----y~g~ev~~~g~~y~i 50 (63)
.|++...|-..+ |.|..|+++|+.|.+
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~~g~~~~v 68 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSFAGHSVQV 68 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEECCEEEEE
Confidence 345555555433 566666777776664
No 261
>PRK06788 flagellar motor switch protein; Validated
Probab=29.64 E-value=97 Score=19.32 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=18.7
Q ss_pred eccCCCEEEeCCCCceE--EEECCEEEE
Q 045997 24 SVKEGDTVLLPEYGGAE--VKLGDKKYH 49 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~e--v~~~g~~y~ 49 (63)
.+++||.+-+.+..+.. +.++|....
T Consensus 54 ~L~vGDVI~Ldk~~~dpv~v~Vng~~~f 81 (119)
T PRK06788 54 QLKVGDVLEVEKNLGHKVDVYLSNMKVG 81 (119)
T ss_pred CCCCCCEEEeCCcCCCCEEEEECCEEEE
Confidence 68899999998876654 455776543
No 262
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=29.44 E-value=97 Score=22.63 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=12.2
Q ss_pred CCCeEEeeeccCCCEEE
Q 045997 16 VNGKFIPVSVKEGDTVL 32 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~Vl 32 (63)
+.|....+.|+.||.|-
T Consensus 66 ~~G~v~~i~V~eG~~V~ 82 (457)
T TIGR01000 66 SNNAIKENYLKENKFVK 82 (457)
T ss_pred CCcEEEEEEcCCCCEec
Confidence 46666777788888774
No 263
>COG0185 RpsS Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]
Probab=29.32 E-value=52 Score=19.94 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=23.2
Q ss_pred EeeeccCCCEEEeCCCCceEEEE-CCEEEEEE
Q 045997 21 IPVSVKEGDTVLLPEYGGAEVKL-GDKKYHLY 51 (63)
Q Consensus 21 ~p~~vk~GD~Vl~~~y~g~ev~~-~g~~y~i~ 51 (63)
.|.---.=|.+++|+|-|..|.+ ||++|+=+
T Consensus 29 ~~IkT~sR~stIlPemVG~ti~VhNGk~~vpV 60 (93)
T COG0185 29 KPIKTWSRRSTILPEMVGLTIAVHNGKKFVPV 60 (93)
T ss_pred CcceeeecccEechhhcCcEEEEEcCceEEEE
Confidence 34444455788999999999965 89998754
No 264
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=29.27 E-value=61 Score=17.90 Aligned_cols=15 Identities=33% Similarity=0.818 Sum_probs=9.8
Q ss_pred eccCCCEEEe-CCCCc
Q 045997 24 SVKEGDTVLL-PEYGG 38 (63)
Q Consensus 24 ~vk~GD~Vl~-~~y~g 38 (63)
.++.||+|.| |..+|
T Consensus 66 ~l~dgDeVai~PpvsG 81 (82)
T PLN02799 66 ALKDGDELAIIPPISG 81 (82)
T ss_pred CcCCCCEEEEeCCCCC
Confidence 6788888766 44444
No 265
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=28.93 E-value=99 Score=16.43 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=11.5
Q ss_pred ceEEEECCEEEEEEec
Q 045997 38 GAEVKLGDKKYHLYED 53 (63)
Q Consensus 38 g~ev~~~g~~y~i~~e 53 (63)
|.-|.+||+-|.+++.
T Consensus 8 G~~i~~~g~~~~V~~~ 23 (58)
T PF08207_consen 8 GMVIEIDGEPYVVLDF 23 (58)
T ss_dssp TSEEEETTEEEEEEEE
T ss_pred CCEEEECCEEEEEEEE
Confidence 4566778888887764
No 266
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=28.62 E-value=1.1e+02 Score=20.61 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=29.6
Q ss_pred EEEEECCCeeC---CCCeEEeeeccCCCEEEeCCCCceEEEECCEE
Q 045997 5 KVVAVGPGARD---VNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKK 47 (63)
Q Consensus 5 ~VvAVG~G~~~---~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~ 47 (63)
+.+--|.|..+ .++..+-+.|+.||.|++|.-----++.+-.+
T Consensus 97 R~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 97 RYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred EEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 44556888644 68888999999999999998322334444333
No 267
>PRK08433 flagellar motor switch protein; Validated
Probab=28.45 E-value=1.4e+02 Score=18.31 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=18.7
Q ss_pred eccCCCEEEeCCCCc--eEEEECCEEEE
Q 045997 24 SVKEGDTVLLPEYGG--AEVKLGDKKYH 49 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g--~ev~~~g~~y~ 49 (63)
.+++||.+.+.+..+ -++.++|....
T Consensus 52 ~Lq~GDVI~Ld~~~~e~v~v~V~g~~~f 79 (111)
T PRK08433 52 KFEKGSVIDLEKPAGESVELYINGRIIG 79 (111)
T ss_pred CCCCCCEEEeCCCCCCCEEEEECCEEEE
Confidence 688999999887643 46667777544
No 268
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=28.03 E-value=87 Score=19.71 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=14.1
Q ss_pred CeEEeeeccCCCEEEeCCCC
Q 045997 18 GKFIPVSVKEGDTVLLPEYG 37 (63)
Q Consensus 18 G~~~p~~vk~GD~Vl~~~y~ 37 (63)
|......+++||+|-+..-.
T Consensus 104 G~~~~~~i~vGd~v~~~~~~ 123 (126)
T COG1430 104 GWAARLGIKVGDRVEFRPLG 123 (126)
T ss_pred CchhhcCCccCCEEEecccC
Confidence 33445679999999886543
No 269
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=27.92 E-value=63 Score=21.97 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=17.2
Q ss_pred EEEEECC-CeeCCCCeEEeeeccCCCEEEeCCC
Q 045997 5 KVVAVGP-GARDVNGKFIPVSVKEGDTVLLPEY 36 (63)
Q Consensus 5 ~VvAVG~-G~~~~~G~~~p~~vk~GD~Vl~~~y 36 (63)
.|++.|. |..+ ..+++||.|+..++
T Consensus 78 ~II~tgsaGsl~-------~~l~~GDiVi~~d~ 103 (261)
T PRK08666 78 RILATSAVGSLN-------PNMKPGDFVILDQF 103 (261)
T ss_pred EEEEeccccccC-------CCCCCCCEEeehhh
Confidence 4566665 3333 36999999998775
No 270
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=27.74 E-value=35 Score=21.27 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=13.1
Q ss_pred eccCCCEEEeCCCCc
Q 045997 24 SVKEGDTVLLPEYGG 38 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g 38 (63)
.+++||+|++-.|+-
T Consensus 77 ~~~~GD~vII~sy~~ 91 (111)
T cd06919 77 LGQPGDRVIIMAYAL 91 (111)
T ss_pred cCCCCCEEEEEECcc
Confidence 689999999988875
No 271
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=27.65 E-value=1.2e+02 Score=21.14 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=17.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEE
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVL 32 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl 32 (63)
.|.++.+.+- -+|......|+.||+|-
T Consensus 44 ~~~~v~i~~~---v~G~V~~v~V~~Gd~Vk 70 (310)
T PRK10559 44 SADVVAIAPD---VSGLITQVNVHDNQLVK 70 (310)
T ss_pred EeEEEEEccC---CceEEEEEEeCCcCEEc
Confidence 3566666652 45667777777777774
No 272
>PRK00809 hypothetical protein; Provisional
Probab=27.61 E-value=38 Score=21.52 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=9.2
Q ss_pred eccCCCEEEe
Q 045997 24 SVKEGDTVLL 33 (63)
Q Consensus 24 ~vk~GD~Vl~ 33 (63)
.+|+||.++|
T Consensus 34 ~Mk~GD~v~f 43 (144)
T PRK00809 34 KVKPGDKLII 43 (144)
T ss_pred hCCCCCEEEE
Confidence 5999999998
No 273
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=27.48 E-value=1.7e+02 Score=21.25 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=21.4
Q ss_pred CCeEEeeeccCCCEEEeCCCCceEEEEC
Q 045997 17 NGKFIPVSVKEGDTVLLPEYGGAEVKLG 44 (63)
Q Consensus 17 ~G~~~p~~vk~GD~Vl~~~y~g~ev~~~ 44 (63)
+|......+++||.+++++-....++-.
T Consensus 285 ~g~~~~~~l~~GD~~~iP~g~~H~i~N~ 312 (367)
T TIGR03404 285 GGNARTFDYQAGDVGYVPRNMGHYVENT 312 (367)
T ss_pred CCcEEEEEECCCCEEEECCCCeEEEEEC
Confidence 4445567899999999999777777643
No 274
>PF12124 Nsp3_PL2pro: Coronavirus polyprotein cleavage domain; InterPro: IPR022733 This domain is found in SARS coronaviruses, and is about 70 amino acids in length. It is found associated with various other coronavirus proteins due to the polyprotein nature of most viral translation. PL2pro is a domain of the non-structural protein nsp3. The domain performs three of the cleavages required to separate the translated polyprotein into its distinct proteins. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2KAF_A 2KQW_A.
Probab=27.42 E-value=72 Score=17.81 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=16.8
Q ss_pred eccCCCEEEeCCCC-ceEEEECCEEE
Q 045997 24 SVKEGDTVLLPEYG-GAEVKLGDKKY 48 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~-g~ev~~~g~~y 48 (63)
-+|-||+++|-.-. -.++-++|+-.
T Consensus 31 flkrgdkivyht~~~~iefh~~gevl 56 (66)
T PF12124_consen 31 FLKRGDKIVYHTVENPIEFHMDGEVL 56 (66)
T ss_dssp EEEETTEEEEE-SSSS--EEETTEEE
T ss_pred HHhcCCEEEEEecCCceEEEecCcEe
Confidence 57999999997744 45777788744
No 275
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=27.24 E-value=37 Score=21.64 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.9
Q ss_pred eccCCCEEEeCCCCc
Q 045997 24 SVKEGDTVLLPEYGG 38 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g 38 (63)
.+++||+|++-.|+-
T Consensus 78 l~~~GD~VII~sy~~ 92 (126)
T TIGR00223 78 CVSVGDIVIIASYVT 92 (126)
T ss_pred cCCCCCEEEEEECCc
Confidence 689999999988764
No 276
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=27.00 E-value=79 Score=22.65 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=24.1
Q ss_pred eccCCCEEEeCC-CCceEEEECCEEEEEEecCCEEEEe
Q 045997 24 SVKEGDTVLLPE-YGGAEVKLGDKKYHLYEDESILGTL 60 (63)
Q Consensus 24 ~vk~GD~Vl~~~-y~g~ev~~~g~~y~i~~e~DIla~i 60 (63)
.+++||+|.|.. .++..+..= .++++++.+.|.+.+
T Consensus 342 ~l~~gd~v~~r~~~~~~~~~~~-~~~~~~~~~~v~~~~ 378 (388)
T cd06813 342 RLGIGDPVWFRHAKAGELCERF-NELHLVRGGEIVGTV 378 (388)
T ss_pred cCCCCCEEEEecCCcchhhhhc-CeEEEEECCEEEEEE
Confidence 489999999955 334444332 356677888887765
No 277
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=26.82 E-value=74 Score=21.45 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=17.8
Q ss_pred EEEEECC-CeeCCCCeEEeeeccCCCEEEeCCC
Q 045997 5 KVVAVGP-GARDVNGKFIPVSVKEGDTVLLPEY 36 (63)
Q Consensus 5 ~VvAVG~-G~~~~~G~~~p~~vk~GD~Vl~~~y 36 (63)
.+|.+|. |..+ ..+++||.|+-.++
T Consensus 85 ~II~~GsaGsl~-------~~l~~GDiVI~~~~ 110 (248)
T TIGR01697 85 ILVVTNAAGGLN-------PDFKPGDLMIIKDH 110 (248)
T ss_pred EEEEecccccCC-------CCCCCCCEEEEhhh
Confidence 5777777 3333 35999999998764
No 278
>PRK11281 hypothetical protein; Provisional
Probab=26.82 E-value=50 Score=27.68 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=22.4
Q ss_pred eccCCCEEEeCCCCceEEEEC---------CEEEEEEecCCE
Q 045997 24 SVKEGDTVLLPEYGGAEVKLG---------DKKYHLYEDESI 56 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~~---------g~~y~i~~e~DI 56 (63)
++++||+|-+..+.|+-.+++ +.+.++++.+.+
T Consensus 938 PfrIGD~I~I~~~~G~V~~I~lRsT~Irt~D~~~ViIPNs~~ 979 (1113)
T PRK11281 938 PVRIGDTVTIGTFSGTVSKIRIRATTITDFDRKEVIVPNKAF 979 (1113)
T ss_pred CcCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEechhh
Confidence 799999999999988644332 334455555544
No 279
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=26.69 E-value=77 Score=17.54 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=10.9
Q ss_pred EEeeeccCCCEEEe
Q 045997 20 FIPVSVKEGDTVLL 33 (63)
Q Consensus 20 ~~p~~vk~GD~Vl~ 33 (63)
..|..+++||.+.+
T Consensus 29 ~LP~~~keGDvl~i 42 (71)
T PF11213_consen 29 RLPEGAKEGDVLEI 42 (71)
T ss_pred HCCCCCCcccEEEE
Confidence 35668999998776
No 280
>PTZ00316 profilin; Provisional
Probab=26.35 E-value=1e+02 Score=20.04 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=13.3
Q ss_pred ceEEEECCEEEEEEec
Q 045997 38 GAEVKLGDKKYHLYED 53 (63)
Q Consensus 38 g~ev~~~g~~y~i~~e 53 (63)
.+=+.++|++|+++|.
T Consensus 59 ~~Gi~l~G~KY~~lr~ 74 (150)
T PTZ00316 59 SSGVTIYGVKFFGLQS 74 (150)
T ss_pred CCCEEEcceEEEEEEe
Confidence 3458999999999985
No 281
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=26.25 E-value=39 Score=21.53 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=12.9
Q ss_pred eccCCCEEEeCCCCc
Q 045997 24 SVKEGDTVLLPEYGG 38 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g 38 (63)
.+++||+|++-.|+-
T Consensus 78 ~~~~GD~vII~ay~~ 92 (126)
T PRK05449 78 LVQVGDLVIIAAYAQ 92 (126)
T ss_pred cCCCCCEEEEEECcc
Confidence 689999999988764
No 282
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=26.19 E-value=48 Score=17.68 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=7.3
Q ss_pred eccCCCEEEeC
Q 045997 24 SVKEGDTVLLP 34 (63)
Q Consensus 24 ~vk~GD~Vl~~ 34 (63)
.++.||+|-+-
T Consensus 49 ~L~~gD~V~ii 59 (65)
T cd00565 49 PLQDGDRIEIV 59 (65)
T ss_pred ecCCCCEEEEE
Confidence 47777777653
No 283
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=26.01 E-value=73 Score=17.10 Aligned_cols=16 Identities=38% Similarity=0.777 Sum_probs=10.2
Q ss_pred eeccCCCEEEe-CCCCc
Q 045997 23 VSVKEGDTVLL-PEYGG 38 (63)
Q Consensus 23 ~~vk~GD~Vl~-~~y~g 38 (63)
..++.||+|.+ +..+|
T Consensus 63 ~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 63 TPLKDGDEVAIIPPVSG 79 (80)
T ss_pred cccCCCCEEEEeCCCCC
Confidence 36888888764 44444
No 284
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=25.91 E-value=51 Score=22.24 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=21.3
Q ss_pred CceEEEEEECCCeeCCCC------eEEeeeccCCCEEEeCC
Q 045997 1 LISGKVVAVGPGARDVNG------KFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G------~~~p~~vk~GD~Vl~~~ 35 (63)
|..|.|+++-||..+-.+ +.....+...|+|+..+
T Consensus 194 L~~GMvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt~ 234 (243)
T cd01091 194 LKKGMVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTE 234 (243)
T ss_pred cCCCCEEEEeCCcccccCccccCccCCeeEEEEEEEEEEcC
Confidence 356788888888753111 12234677778887765
No 285
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=25.89 E-value=50 Score=22.26 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=9.6
Q ss_pred CCCeEEeeeccCCCEE
Q 045997 16 VNGKFIPVSVKEGDTV 31 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~V 31 (63)
.+|+.....+++||.|
T Consensus 15 ~~g~~~~~~~~~g~~v 30 (371)
T PRK14875 15 TEGKVAGWLVQEGDEV 30 (371)
T ss_pred ceEEEEEEEcCCCCEe
Confidence 3566666666666655
No 286
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=25.84 E-value=46 Score=20.86 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=11.1
Q ss_pred eeeccCCCEEEeCC
Q 045997 22 PVSVKEGDTVLLPE 35 (63)
Q Consensus 22 p~~vk~GD~Vl~~~ 35 (63)
|..+++||.|++..
T Consensus 1 ~~~i~vGd~VlI~~ 14 (128)
T cd04719 1 ALTIEVGDFVLIEG 14 (128)
T ss_pred CeEEecCCEEEEEC
Confidence 35789999999864
No 287
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=25.83 E-value=64 Score=21.11 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=11.0
Q ss_pred eeccCCCEEEeCC
Q 045997 23 VSVKEGDTVLLPE 35 (63)
Q Consensus 23 ~~vk~GD~Vl~~~ 35 (63)
..+++||.|++..
T Consensus 51 ~~~~vGD~Vlik~ 63 (179)
T cd04720 51 LELSVGDTILVKD 63 (179)
T ss_pred eEEeCCCEEEEeC
Confidence 4799999999954
No 288
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=25.75 E-value=27 Score=20.72 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=22.0
Q ss_pred eccCCCEEEeCCCCc----eEEEECCEEEEEEecCCEEEE
Q 045997 24 SVKEGDTVLLPEYGG----AEVKLGDKKYHLYEDESILGT 59 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g----~ev~~~g~~y~i~~e~DIla~ 59 (63)
-++--|.+-+..++. -.+..+|++|+ +++.||+-.
T Consensus 43 Vi~~~d~i~~g~~~~ak~~Gkir~eGK~Yi-v~DGDi~~f 81 (83)
T cd04867 43 VMKYEDLVELGSEAAAKEAGKYRQEGKDYV-VQDGDIIFF 81 (83)
T ss_pred EEcHHHHHHcCCHHHHHHcChhhhhCCceE-eeCCeEEEE
Confidence 344444444444332 36778899997 889998754
No 289
>PHA02951 Hypothetical protein; Provisional
Probab=25.71 E-value=1.2e+02 Score=22.37 Aligned_cols=34 Identities=18% Similarity=0.444 Sum_probs=25.0
Q ss_pred eEEeeeccCCCEEEeCCCCceEE--EECC-EEEEEEe
Q 045997 19 KFIPVSVKEGDTVLLPEYGGAEV--KLGD-KKYHLYE 52 (63)
Q Consensus 19 ~~~p~~vk~GD~Vl~~~y~g~ev--~~~g-~~y~i~~ 52 (63)
......+.+||.++++.+-|..+ ++.| ..|++++
T Consensus 145 ~~LK~ni~~GD~IVsRs~rGv~fLPQIGGeaiYLIVs 181 (337)
T PHA02951 145 SVLKINICQGDTIVSRSSRGVQFLPQIGGEAIYLVVS 181 (337)
T ss_pred chheeeeccCcEEEEeccccceeccccCceeEEEEEE
Confidence 33445778899999999888777 4555 4787765
No 290
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=25.66 E-value=84 Score=18.06 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=16.1
Q ss_pred eccCCCEEEeCC-CCce--EE--EECCEEEEEEecCC
Q 045997 24 SVKEGDTVLLPE-YGGA--EV--KLGDKKYHLYEDES 55 (63)
Q Consensus 24 ~vk~GD~Vl~~~-y~g~--ev--~~~g~~y~i~~e~D 55 (63)
.++|||++-|.- -.|. .+ ..+....++.|.+|
T Consensus 42 ~L~pGq~l~f~~d~~g~L~~L~~~~~~~~~~~~R~~D 78 (85)
T PF04225_consen 42 RLKPGQTLEFQLDEDGQLTALRYERSPKTTLYTRQSD 78 (85)
T ss_dssp G--TT-EEEEEE-TTS-EEEEEEEEETTEEEEEE-TT
T ss_pred hCCCCCEEEEEECCCCCEEEEEEEcCCcEEEEEEeCC
Confidence 699999999843 3342 33 33444666667655
No 291
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=25.63 E-value=52 Score=24.42 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=19.1
Q ss_pred eccCCCEEEeCC-CCceEEEECCEEEEEEe
Q 045997 24 SVKEGDTVLLPE-YGGAEVKLGDKKYHLYE 52 (63)
Q Consensus 24 ~vk~GD~Vl~~~-y~g~ev~~~g~~y~i~~ 52 (63)
++|+||+|..+- |+-.=.+-++.+.+++-
T Consensus 253 sLKpGDKvtisGPfGEfFaKdtdaemvFig 282 (410)
T COG2871 253 SLKPGDKVTISGPFGEFFAKDTDAEMVFIG 282 (410)
T ss_pred eecCCCeEEEeccchhhhhccCCCceEEEe
Confidence 799999999876 54333344556666553
No 292
>PF04943 Pox_F11: Poxvirus F11 protein; InterPro: IPR007027 These proteins belong to the poxvirus F11 family. They are early virus proteins.
Probab=25.39 E-value=1.3e+02 Score=22.38 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=27.0
Q ss_pred CCeEEeeeccCCCEEEeCCCCceEE--EECC-EEEEEEe
Q 045997 17 NGKFIPVSVKEGDTVLLPEYGGAEV--KLGD-KKYHLYE 52 (63)
Q Consensus 17 ~G~~~p~~vk~GD~Vl~~~y~g~ev--~~~g-~~y~i~~ 52 (63)
+-......+..||.++++.+-|..+ .+.| ..|++++
T Consensus 135 ~t~~lk~nm~~Gd~ivsrs~rgi~fLPQIgG~a~YLIv~ 173 (366)
T PF04943_consen 135 NTNFLKHNMEEGDYIVSRSSRGINFLPQIGGEAIYLIVS 173 (366)
T ss_pred CCcceEeeeeeCCEEEEecccccccccccCceeEEEEEE
Confidence 3344667899999999999988777 4555 4787765
No 293
>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification. ; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....
Probab=25.37 E-value=31 Score=18.04 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=5.0
Q ss_pred eccCCCEEEeCC
Q 045997 24 SVKEGDTVLLPE 35 (63)
Q Consensus 24 ~vk~GD~Vl~~~ 35 (63)
.++.||.|+|..
T Consensus 24 ~~~~gdivv~~~ 35 (70)
T PF00717_consen 24 EPKDGDIVVVKI 35 (70)
T ss_dssp ---TTSEEEEEE
T ss_pred CCccCeEEEEEE
Confidence 455566555543
No 294
>PHA02699 hypothetical protein; Provisional
Probab=25.34 E-value=1e+02 Score=23.46 Aligned_cols=36 Identities=28% Similarity=0.636 Sum_probs=27.3
Q ss_pred CCeEEeeeccCCCEEEeCCCCceEE--EECC-EEEEEEe
Q 045997 17 NGKFIPVSVKEGDTVLLPEYGGAEV--KLGD-KKYHLYE 52 (63)
Q Consensus 17 ~G~~~p~~vk~GD~Vl~~~y~g~ev--~~~g-~~y~i~~ 52 (63)
+-......+..||.++++.+-|..+ .+.| ..|+|++
T Consensus 186 ~T~~lktnmqeGD~IVsRSsRGI~FLPQIGGeAiYLIVs 224 (466)
T PHA02699 186 NTKFLKTNIQEGDAIVFPAARGMFFLPHIGGDAEYIILT 224 (466)
T ss_pred CCcceeeeeecCCEEEEehhchhhhhhhcCCceEEEEEE
Confidence 3345667899999999999888776 4544 5888775
No 295
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=25.28 E-value=1.4e+02 Score=16.94 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=23.5
Q ss_pred EeeeccCCCEEEeCC--CCc--eEEEECCEEEEEEecCC
Q 045997 21 IPVSVKEGDTVLLPE--YGG--AEVKLGDKKYHLYEDES 55 (63)
Q Consensus 21 ~p~~vk~GD~Vl~~~--y~g--~ev~~~g~~y~i~~e~D 55 (63)
.|..=++|++|.+.- |+. ..|.+++...-++.-+|
T Consensus 7 ~P~~g~pG~~VtI~G~gFg~~~~~V~~g~~~a~v~s~sd 45 (81)
T cd00604 7 GPVMGKPGNTVTISGEGFGSTGGTVYFGGTAAEVLSWSD 45 (81)
T ss_pred cCCCCCCCCEEEEEEECCCCCccEEEECCEEEEEEEECC
Confidence 345667999998854 655 47888887665554443
No 296
>CHL00142 rps17 ribosomal protein S17; Validated
Probab=25.24 E-value=38 Score=19.89 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=11.1
Q ss_pred eccCCCEEEeCCC
Q 045997 24 SVKEGDTVLLPEY 36 (63)
Q Consensus 24 ~vk~GD~Vl~~~y 36 (63)
.+++||+|.+.+-
T Consensus 50 ~~~~GD~V~I~e~ 62 (84)
T CHL00142 50 ECNIGDQVLIEET 62 (84)
T ss_pred CCCCCCEEEEEEc
Confidence 6999999999763
No 297
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=25.08 E-value=47 Score=19.89 Aligned_cols=16 Identities=38% Similarity=0.285 Sum_probs=11.4
Q ss_pred CeEEeeeccCCCEEEe
Q 045997 18 GKFIPVSVKEGDTVLL 33 (63)
Q Consensus 18 G~~~p~~vk~GD~Vl~ 33 (63)
|..-.+.|++||+|.-
T Consensus 39 G~~~~p~V~~Gd~V~~ 54 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKK 54 (101)
T ss_pred CCcceEEEcCCCEEcC
Confidence 4444568999999974
No 298
>PF06949 DUF1292: Protein of unknown function (DUF1292); InterPro: IPR009711 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=24.85 E-value=1.1e+02 Score=16.83 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=11.6
Q ss_pred EEEECCEEEEEEecC
Q 045997 40 EVKLGDKKYHLYEDE 54 (63)
Q Consensus 40 ev~~~g~~y~i~~e~ 54 (63)
.+.++|++|+++...
T Consensus 13 ~f~~~~~~Y~~l~~~ 27 (76)
T PF06949_consen 13 EFEVDGKEYIVLVPV 27 (76)
T ss_pred EEEECCeEEEEEEec
Confidence 567789999988753
No 299
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=24.84 E-value=43 Score=19.19 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=11.7
Q ss_pred eeccCCCEEEeCCCC
Q 045997 23 VSVKEGDTVLLPEYG 37 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~ 37 (63)
+-+++||.|+...+.
T Consensus 37 iwI~~GD~VlV~~~~ 51 (78)
T cd04456 37 IWIKRGDFLIVDPIE 51 (78)
T ss_pred EEEcCCCEEEEEecc
Confidence 458999999996644
No 300
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=24.65 E-value=43 Score=19.24 Aligned_cols=13 Identities=46% Similarity=0.723 Sum_probs=10.4
Q ss_pred eeccCCCEEEeCC
Q 045997 23 VSVKEGDTVLLPE 35 (63)
Q Consensus 23 ~~vk~GD~Vl~~~ 35 (63)
+.|++||+|.|-.
T Consensus 19 i~V~~G~tV~~~n 31 (99)
T PF00127_consen 19 ITVKAGDTVTFVN 31 (99)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEECCCCEEEEEE
Confidence 4789999998754
No 301
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=24.64 E-value=46 Score=19.05 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=12.5
Q ss_pred eeeccCCCEEEe--CCCCc
Q 045997 22 PVSVKEGDTVLL--PEYGG 38 (63)
Q Consensus 22 p~~vk~GD~Vl~--~~y~g 38 (63)
.+.++.||+|.. .++.|
T Consensus 4 ~~~I~kGD~V~Vi~G~dKG 22 (76)
T PRK12281 4 KLKVKKGDMVKVIAGDDKG 22 (76)
T ss_pred cccccCCCEEEEeEcCCCC
Confidence 368999999987 33555
No 302
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=24.60 E-value=54 Score=17.44 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=7.8
Q ss_pred eccCCCEEEeCC
Q 045997 24 SVKEGDTVLLPE 35 (63)
Q Consensus 24 ~vk~GD~Vl~~~ 35 (63)
.++.||+|-+-.
T Consensus 49 ~L~dgD~Ieiv~ 60 (65)
T PRK06488 49 VLHEGDRIEILS 60 (65)
T ss_pred ccCCCCEEEEEE
Confidence 577777776543
No 303
>COG0186 RpsQ Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=24.47 E-value=41 Score=20.07 Aligned_cols=13 Identities=38% Similarity=0.463 Sum_probs=11.0
Q ss_pred eeccCCCEEEeCC
Q 045997 23 VSVKEGDTVLLPE 35 (63)
Q Consensus 23 ~~vk~GD~Vl~~~ 35 (63)
..+++||+|.+.+
T Consensus 54 ~~~k~GD~V~I~E 66 (87)
T COG0186 54 NEAKVGDIVRIAE 66 (87)
T ss_pred ccCCCCCEEEEEE
Confidence 4789999999865
No 304
>CHL00050 rps19 ribosomal protein S19
Probab=24.40 E-value=98 Score=18.48 Aligned_cols=32 Identities=9% Similarity=0.065 Sum_probs=24.0
Q ss_pred eeeccCCCEEEeCCCCceEEEE-CCEEEEEEec
Q 045997 22 PVSVKEGDTVLLPEYGGAEVKL-GDKKYHLYED 53 (63)
Q Consensus 22 p~~vk~GD~Vl~~~y~g~ev~~-~g~~y~i~~e 53 (63)
|...-.=+.+++|+|-|..|.+ ||++|+=+.-
T Consensus 30 ~ikT~sR~s~IlP~~vg~t~~VyNGk~fv~v~I 62 (92)
T CHL00050 30 IIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYI 62 (92)
T ss_pred cceEEccccEeChhhcCcEEEEEcCceEEEEEE
Confidence 3444555778999999999965 9999986653
No 305
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=24.22 E-value=83 Score=21.02 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=15.6
Q ss_pred EEeeeccCCCEEEeCCCCceEE
Q 045997 20 FIPVSVKEGDTVLLPEYGGAEV 41 (63)
Q Consensus 20 ~~p~~vk~GD~Vl~~~y~g~ev 41 (63)
.+...-++||.|+|+.|=--.+
T Consensus 161 ~~~v~P~~G~lvlFPS~L~H~v 182 (201)
T TIGR02466 161 FVYVPPQEGRVLLFESWLRHEV 182 (201)
T ss_pred cEEECCCCCeEEEECCCCceec
Confidence 3345669999999999754433
No 306
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=24.21 E-value=70 Score=17.08 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=6.1
Q ss_pred EecCCEEEEec
Q 045997 51 YEDESILGTLH 61 (63)
Q Consensus 51 ~~e~DIla~i~ 61 (63)
+...+.|+.++
T Consensus 60 V~~g~~l~~ie 70 (70)
T PRK08225 60 VNEGDVLLEIE 70 (70)
T ss_pred ECCCCEEEEEC
Confidence 45556666553
No 307
>cd06165 Sortase_A_1 Sortase A (SrtA) or subfamily-1 sortases are cysteine transpeptidases found in gram-positive bacteria that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal (usually a pentapeptide motif), and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. This group contains a subset of Class A (subfamily-1) sortases, excluding SrtA from Staphylococcus aureus. Sortase A cleaves between threonine and glycine of the LPXTG motif in a wide range of protein substrates. It affects the ability of a pathogen to establish successful infection. Sortase A contains an N-terminal region that functions as both a signal peptide for secretion and a stop-tra
Probab=24.20 E-value=1.1e+02 Score=18.24 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=18.6
Q ss_pred eccCCCEEEeCCCCceEEEECCEEEEEEecCCE
Q 045997 24 SVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESI 56 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DI 56 (63)
.+++||.|.+.... ...++.=.+..+++.+|+
T Consensus 63 ~l~~Gd~I~l~~~~-~~~~Y~V~~~~~v~~~~~ 94 (127)
T cd06165 63 KVKVGDKIYLTDKD-NVYEYKVTSKKIVDPTRV 94 (127)
T ss_pred HCcCCCEEEEEECC-EEEEEEEeeEEEECcccc
Confidence 78899999987733 344444333334444443
No 308
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=24.10 E-value=46 Score=20.30 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=10.6
Q ss_pred eeeccCCCEEEeC
Q 045997 22 PVSVKEGDTVLLP 34 (63)
Q Consensus 22 p~~vk~GD~Vl~~ 34 (63)
+..+++||+|.+.
T Consensus 49 ~~~~~~GD~V~v~ 61 (135)
T PF04246_consen 49 PIGAKVGDRVEVE 61 (135)
T ss_pred CCCCCCCCEEEEE
Confidence 4589999999864
No 309
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.09 E-value=1.5e+02 Score=17.88 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=24.6
Q ss_pred eccCCCEEEeCC----CCceEEEECCEEEEEEecCCEE
Q 045997 24 SVKEGDTVLLPE----YGGAEVKLGDKKYHLYEDESIL 57 (63)
Q Consensus 24 ~vk~GD~Vl~~~----y~g~ev~~~g~~y~i~~e~DIl 57 (63)
.|++||+|-.+= -.|.-++++.--.-+.-++|.+
T Consensus 20 eV~~gd~vel~~grVhIpG~vv~~n~g~l~l~~esdmi 57 (91)
T COG4013 20 EVDVGDYVELYFGRVHIPGRVVHYNDGLLRLVHESDMI 57 (91)
T ss_pred cCCCCCEEEEEEEEEEeccEEEEeeccEEEEEEecccc
Confidence 689999997532 3477888877777777777654
No 310
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=24.05 E-value=49 Score=19.17 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=12.2
Q ss_pred eeccCCCEEEeCCCCc
Q 045997 23 VSVKEGDTVLLPEYGG 38 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~g 38 (63)
+-++.||.|+...+..
T Consensus 42 iwI~~GD~VlVe~~~~ 57 (83)
T smart00652 42 VWIRRGDIVLVDPWDF 57 (83)
T ss_pred EEEcCCCEEEEEecCC
Confidence 4589999999976543
No 311
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=23.81 E-value=84 Score=17.26 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=10.0
Q ss_pred eeccCCCEEEe-CCCCc
Q 045997 23 VSVKEGDTVLL-PEYGG 38 (63)
Q Consensus 23 ~~vk~GD~Vl~-~~y~g 38 (63)
..++.||.|.+ |..+|
T Consensus 63 ~~l~dgDevai~PpvsG 79 (80)
T TIGR01682 63 ALLNEGDEVAFIPPVSG 79 (80)
T ss_pred cCcCCCCEEEEeCCCCC
Confidence 46778877755 44544
No 312
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=23.66 E-value=1.8e+02 Score=17.52 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=15.8
Q ss_pred eccCCCEEEeCC-CCceEEEECCEE
Q 045997 24 SVKEGDTVLLPE-YGGAEVKLGDKK 47 (63)
Q Consensus 24 ~vk~GD~Vl~~~-y~g~ev~~~g~~ 47 (63)
++++||+|+-.. .-|+-.++++..
T Consensus 43 sL~kGD~VvT~gGi~G~V~~v~d~~ 67 (97)
T COG1862 43 SLKKGDEVVTIGGIVGTVTKVGDDT 67 (97)
T ss_pred hccCCCEEEEcCCeEEEEEEEecCc
Confidence 688899988755 556555555433
No 313
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=23.56 E-value=67 Score=19.64 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=13.2
Q ss_pred CCCeEEee--eccCCCEEEeCC
Q 045997 16 VNGKFIPV--SVKEGDTVLLPE 35 (63)
Q Consensus 16 ~~G~~~p~--~vk~GD~Vl~~~ 35 (63)
-||....+ .||+||.+-+.-
T Consensus 38 vNG~~aKpS~~VK~GD~l~i~~ 59 (100)
T COG1188 38 VNGQRAKPSKEVKVGDILTIRF 59 (100)
T ss_pred ECCEEcccccccCCCCEEEEEe
Confidence 34444333 899999987643
No 314
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=23.55 E-value=2.1e+02 Score=18.38 Aligned_cols=43 Identities=26% Similarity=0.489 Sum_probs=28.6
Q ss_pred EEEECCCe---eCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEE
Q 045997 6 VVAVGPGA---RDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKY 48 (63)
Q Consensus 6 VvAVG~G~---~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y 48 (63)
-+-=|.|. ...++..+-+.+++||.+..|.----.++.+...|
T Consensus 97 ~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~ 142 (157)
T PF03079_consen 97 YIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPY 142 (157)
T ss_dssp EEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSS
T ss_pred EEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCc
Confidence 34456665 33677778889999999999987667788765443
No 315
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=23.45 E-value=51 Score=18.81 Aligned_cols=16 Identities=38% Similarity=0.548 Sum_probs=12.0
Q ss_pred eeccCCCEEEeCCCCc
Q 045997 23 VSVKEGDTVLLPEYGG 38 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~g 38 (63)
+-+++||.|+...+..
T Consensus 37 iwI~~GD~V~Ve~~~~ 52 (77)
T cd05793 37 VWINEGDIVLVAPWDF 52 (77)
T ss_pred EEEcCCCEEEEEeccc
Confidence 5689999999865443
No 316
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=23.37 E-value=2.2e+02 Score=20.12 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=16.6
Q ss_pred EEEeCCCCceEE---EECCEEEEEEecCCEEEEecc
Q 045997 30 TVLLPEYGGAEV---KLGDKKYHLYEDESILGTLHD 62 (63)
Q Consensus 30 ~Vl~~~y~g~ev---~~~g~~y~i~~e~DIla~i~~ 62 (63)
++++.+++|.-- ++.+ .++..|+||.+.+
T Consensus 165 r~IrAp~~Gi~~~~~~IGd----~V~KGqvLa~I~~ 196 (256)
T TIGR03309 165 RVLRAPADGIVTPTKAIGD----SVKKGDVIATVGD 196 (256)
T ss_pred EEEECCCCeEEeeccCCCC----EEeCCCEEEEEcC
Confidence 777777777422 2222 2566777776653
No 317
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=23.23 E-value=79 Score=19.58 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=11.4
Q ss_pred EeeeccCCCEEEeCCC
Q 045997 21 IPVSVKEGDTVLLPEY 36 (63)
Q Consensus 21 ~p~~vk~GD~Vl~~~y 36 (63)
+-+.+++||+|-+.-.
T Consensus 96 ~vL~L~~GD~Vwl~l~ 111 (135)
T smart00110 96 ALLQLRQGDQVWLELP 111 (135)
T ss_pred EEEEECCCCEEEEEEe
Confidence 4457889999876543
No 318
>PRK07440 hypothetical protein; Provisional
Probab=23.18 E-value=92 Score=17.16 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=6.8
Q ss_pred eeccCCCEEEe
Q 045997 23 VSVKEGDTVLL 33 (63)
Q Consensus 23 ~~vk~GD~Vl~ 33 (63)
..++.||+|-+
T Consensus 53 ~~L~~gD~IEI 63 (70)
T PRK07440 53 TQVQPGDRLEI 63 (70)
T ss_pred eecCCCCEEEE
Confidence 46666666654
No 319
>PF13989 YejG: YejG-like protein
Probab=23.04 E-value=76 Score=19.69 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=15.8
Q ss_pred eEEEECCEEEEEEecCCEEE
Q 045997 39 AEVKLGDKKYHLYEDESILG 58 (63)
Q Consensus 39 ~ev~~~g~~y~i~~e~DIla 58 (63)
.-++.+|+.++|++.+|=.|
T Consensus 70 ~vvE~eGepCLFv~~~DEsa 89 (106)
T PF13989_consen 70 AVVEWEGEPCLFVHREDESA 89 (106)
T ss_pred eEEEecCCceEEEecccchh
Confidence 44678999999999888544
No 320
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=23.01 E-value=99 Score=21.47 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=17.1
Q ss_pred EEEEECC-CeeCCCCeEEeeeccCCCEEEeCCC
Q 045997 5 KVVAVGP-GARDVNGKFIPVSVKEGDTVLLPEY 36 (63)
Q Consensus 5 ~VvAVG~-G~~~~~G~~~p~~vk~GD~Vl~~~y 36 (63)
.+++.|+ |..+ ..+++||.|+..++
T Consensus 86 ~iI~tnavGsl~-------~~~~pGDlVv~~D~ 111 (267)
T PRK08564 86 WVIAVSAVGSLR-------EDYKPGDFVIPDQF 111 (267)
T ss_pred EEEEeccccccC-------CCCCCCCEEeehhh
Confidence 4566665 3333 25999999998885
No 321
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=23.01 E-value=28 Score=21.48 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=0.0
Q ss_pred CCCeEEee-eccCCCEEEeCC
Q 045997 16 VNGKFIPV-SVKEGDTVLLPE 35 (63)
Q Consensus 16 ~~G~~~p~-~vk~GD~Vl~~~ 35 (63)
.+|. +|+ ++++||+|+=.+
T Consensus 5 ~~G~-k~Ie~I~~GD~Vls~d 24 (130)
T PF07591_consen 5 ADGL-KPIEDIKVGDRVLSYD 24 (130)
T ss_dssp ---------------------
T ss_pred cccc-cccccccccccccccc
Confidence 4553 455 899999999644
No 322
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=23.00 E-value=58 Score=17.88 Aligned_cols=11 Identities=55% Similarity=0.984 Sum_probs=9.6
Q ss_pred eeccCCCEEEe
Q 045997 23 VSVKEGDTVLL 33 (63)
Q Consensus 23 ~~vk~GD~Vl~ 33 (63)
+.++.||+|.|
T Consensus 43 ~~L~e~D~v~~ 53 (57)
T PF14453_consen 43 IELKEGDEVFL 53 (57)
T ss_pred cccCCCCEEEE
Confidence 58999999987
No 323
>PRK04038 rps19p 30S ribosomal protein S19P; Provisional
Probab=22.88 E-value=1.1e+02 Score=19.55 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=23.4
Q ss_pred eeccCCCEEEeCCCCceEEEE-CCEEEEEEec
Q 045997 23 VSVKEGDTVLLPEYGGAEVKL-GDKKYHLYED 53 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~g~ev~~-~g~~y~i~~e 53 (63)
...-.=+.+++|+|-|..|.+ ||++|+=+.-
T Consensus 65 ikT~sR~s~IlP~~VG~ti~VyNGk~fv~v~I 96 (134)
T PRK04038 65 IRTHVRDMIILPEMVGLTIAVYNGKEFVEVEI 96 (134)
T ss_pred eeEeccCCeeChhhcCeEEEEecCceeEeEEe
Confidence 444455778999999999965 8999876653
No 324
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=22.76 E-value=87 Score=20.94 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=16.8
Q ss_pred EEEEECC-CeeCCCCeEEeeeccCCCEEEeCCC
Q 045997 5 KVVAVGP-GARDVNGKFIPVSVKEGDTVLLPEY 36 (63)
Q Consensus 5 ~VvAVG~-G~~~~~G~~~p~~vk~GD~Vl~~~y 36 (63)
.+|.+|. |..+ ..+++||.|+-.++
T Consensus 78 ~iI~~GsaG~l~-------~~l~~GDlVI~~~~ 103 (241)
T TIGR01694 78 YVISVNAVGSLR-------EEYPPGDLVVPDQF 103 (241)
T ss_pred EEEEeccccccC-------CCCCCCCEEEEhhH
Confidence 4566665 3332 25999999998764
No 325
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=22.66 E-value=64 Score=18.73 Aligned_cols=17 Identities=41% Similarity=0.470 Sum_probs=12.5
Q ss_pred eeeccCCCEEEe--CCCCc
Q 045997 22 PVSVKEGDTVLL--PEYGG 38 (63)
Q Consensus 22 p~~vk~GD~Vl~--~~y~g 38 (63)
.+.+++||+|.. .++.|
T Consensus 6 ~~~I~~GD~V~Vi~G~dKG 24 (83)
T CHL00141 6 KMHVKIGDTVKIISGSDKG 24 (83)
T ss_pred eCcccCCCEEEEeEcCCCC
Confidence 468999999987 33555
No 326
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=22.65 E-value=2.4e+02 Score=18.77 Aligned_cols=15 Identities=40% Similarity=0.755 Sum_probs=7.3
Q ss_pred EeeeccCCCEEEeCC
Q 045997 21 IPVSVKEGDTVLLPE 35 (63)
Q Consensus 21 ~p~~vk~GD~Vl~~~ 35 (63)
.+..+++||..+++.
T Consensus 76 ~~v~L~eGd~fllP~ 90 (177)
T PRK13264 76 RDVPIREGEMFLLPP 90 (177)
T ss_pred eeEEECCCCEEEeCC
Confidence 344455555555544
No 327
>PRK06748 hypothetical protein; Validated
Probab=22.63 E-value=75 Score=18.51 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=6.7
Q ss_pred EecCCEEEEec
Q 045997 51 YEDESILGTLH 61 (63)
Q Consensus 51 ~~e~DIla~i~ 61 (63)
+...++||.++
T Consensus 64 V~vG~~la~I~ 74 (83)
T PRK06748 64 IADQKLLITVR 74 (83)
T ss_pred ECCCCEEEEEE
Confidence 45556667665
No 328
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=22.53 E-value=1.2e+02 Score=16.26 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=13.2
Q ss_pred EEEEECCCeeCCCCeEEeeeccCCCEEE
Q 045997 5 KVVAVGPGARDVNGKFIPVSVKEGDTVL 32 (63)
Q Consensus 5 ~VvAVG~G~~~~~G~~~p~~vk~GD~Vl 32 (63)
.|..|-++..... .+++||.++
T Consensus 11 ~V~~V~~~s~A~~------gL~~GD~I~ 32 (79)
T cd00986 11 YVTSVVEGMPAAG------KLKAGDHII 32 (79)
T ss_pred EEEEECCCCchhh------CCCCCCEEE
Confidence 3445666543321 388899887
No 329
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=22.51 E-value=1.2e+02 Score=20.65 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=12.3
Q ss_pred CeEEeeeccCCCEEE
Q 045997 18 GKFIPVSVKEGDTVL 32 (63)
Q Consensus 18 G~~~p~~vk~GD~Vl 32 (63)
|....+.|+.||+|-
T Consensus 25 G~V~~i~V~eG~~V~ 39 (327)
T TIGR02971 25 DRIKKLLVAEGDRVQ 39 (327)
T ss_pred cEEEEEEccCCCEec
Confidence 788888888888885
No 330
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=22.34 E-value=1.8e+02 Score=17.16 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=17.4
Q ss_pred CCCCeEEeeeccCCCEEEeCC
Q 045997 15 DVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 15 ~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
..+|.+.-.++.+|.+.+-.+
T Consensus 55 l~~g~y~~~~v~pG~h~i~~~ 75 (117)
T PF11008_consen 55 LKNGGYFYVEVPPGKHTISAK 75 (117)
T ss_pred eCCCeEEEEEECCCcEEEEEe
Confidence 357888899999999988755
No 331
>PF10665 Minor_capsid_1: Minor capsid protein; InterPro: IPR019612 This entry is represented by Bacteriophage A118, Gp9. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a putative tail-knob protein from Listeria phage A118.
Probab=22.31 E-value=99 Score=18.94 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=14.5
Q ss_pred ceEEEECCEEEEEEecCCE
Q 045997 38 GAEVKLGDKKYHLYEDESI 56 (63)
Q Consensus 38 g~ev~~~g~~y~i~~e~DI 56 (63)
|..|.++|++|.+-+-.+.
T Consensus 80 ~skI~fdG~ey~V~~v~~~ 98 (114)
T PF10665_consen 80 GSKIVFDGKEYTVTKVNPN 98 (114)
T ss_pred CCEEEECCceEEEEEEEec
Confidence 6788889999988765544
No 332
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=22.26 E-value=71 Score=16.96 Aligned_cols=10 Identities=40% Similarity=0.810 Sum_probs=7.1
Q ss_pred eccCCCEEEe
Q 045997 24 SVKEGDTVLL 33 (63)
Q Consensus 24 ~vk~GD~Vl~ 33 (63)
.++.||.|.+
T Consensus 61 ~l~~gD~V~i 70 (77)
T PF02597_consen 61 PLKDGDEVAI 70 (77)
T ss_dssp BEETTEEEEE
T ss_pred CcCCCCEEEE
Confidence 6677777765
No 333
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=22.23 E-value=1.1e+02 Score=19.84 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=24.1
Q ss_pred eeeccCCCEEEeCCCCceEEEE-CCEEEEEEec
Q 045997 22 PVSVKEGDTVLLPEYGGAEVKL-GDKKYHLYED 53 (63)
Q Consensus 22 p~~vk~GD~Vl~~~y~g~ev~~-~g~~y~i~~e 53 (63)
+...-.=|.+++|++-|..|.+ ||++|+-+.-
T Consensus 75 ~ikT~~R~~~IlP~mVG~ti~VyNGK~fv~V~I 107 (143)
T PTZ00096 75 AVKTHLRDMIIVPEMVGSVVGVYNGKQFNNVEI 107 (143)
T ss_pred ceeEecccCeeCccccCcEEEEEcCCeeEeeEe
Confidence 3444455778999999999965 9999986654
No 334
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=22.21 E-value=1.8e+02 Score=17.10 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=18.3
Q ss_pred CCCCceEEEECCEEEEEEec--CCEEEE
Q 045997 34 PEYGGAEVKLGDKKYHLYED--ESILGT 59 (63)
Q Consensus 34 ~~y~g~ev~~~g~~y~i~~e--~DIla~ 59 (63)
++-.+..+.++|.+..+++. +.+.|+
T Consensus 12 ~~~~~~~~~v~g~~Ialf~~~~~~vyAi 39 (104)
T PF13806_consen 12 PPGEGRAVEVDGRQIALFRVRDGEVYAI 39 (104)
T ss_dssp CTTSEEEEEETTEEEEEEEESTTEEEEE
T ss_pred CCCCcEEEEECCeEEEEEEeCCCCEEEE
Confidence 44556778889998888887 455554
No 335
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease. Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.
Probab=22.21 E-value=75 Score=17.65 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=6.0
Q ss_pred eccCCCEEEeC
Q 045997 24 SVKEGDTVLLP 34 (63)
Q Consensus 24 ~vk~GD~Vl~~ 34 (63)
.++.||.|++.
T Consensus 11 ~l~~GD~vlv~ 21 (90)
T TIGR02754 11 TLPPGDRIIVV 21 (90)
T ss_pred ccCCCCEEEEE
Confidence 45555555554
No 336
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=22.19 E-value=1.7e+02 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=11.0
Q ss_pred eccCCCEEEeCC
Q 045997 24 SVKEGDTVLLPE 35 (63)
Q Consensus 24 ~vk~GD~Vl~~~ 35 (63)
.+++||.++|..
T Consensus 363 ~l~~GD~l~i~~ 374 (420)
T PRK11165 363 QVQVGDYLVFHD 374 (420)
T ss_pred CCCCCCEEEEec
Confidence 899999999976
No 337
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=22.15 E-value=77 Score=17.63 Aligned_cols=14 Identities=43% Similarity=0.430 Sum_probs=11.4
Q ss_pred eeccCCCEEEeCCC
Q 045997 23 VSVKEGDTVLLPEY 36 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y 36 (63)
+.+++||+|.|..-
T Consensus 13 i~v~~GdtVt~~N~ 26 (83)
T TIGR02657 13 LHVKVGDTVTWINR 26 (83)
T ss_pred EEECCCCEEEEEEC
Confidence 47999999999654
No 338
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=22.14 E-value=1.8e+02 Score=20.26 Aligned_cols=29 Identities=38% Similarity=0.460 Sum_probs=17.5
Q ss_pred eEEEEEECCCeeC---CCCeEEeeeccCCCEE
Q 045997 3 SGKVVAVGPGARD---VNGKFIPVSVKEGDTV 31 (63)
Q Consensus 3 ~G~VvAVG~G~~~---~~G~~~p~~vk~GD~V 31 (63)
.|+|+.-+.-... ..|......|+.||.|
T Consensus 34 ~G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V 65 (423)
T TIGR01843 34 TGKVVPSGNVKVVQHLEGGIVREILVREGDRV 65 (423)
T ss_pred eeEEEECCCeeecccCCCcEEEEEEeCCCCEe
Confidence 3555555443211 4677777788888877
No 339
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=22.00 E-value=1.6e+02 Score=23.23 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=17.9
Q ss_pred CCeEEeeeccCCCEEEeCCCCceEEE
Q 045997 17 NGKFIPVSVKEGDTVLLPEYGGAEVK 42 (63)
Q Consensus 17 ~G~~~p~~vk~GD~Vl~~~y~g~ev~ 42 (63)
+|+-.|...++||+| |+|+.+.
T Consensus 294 TGEs~Pv~k~~Gd~V----~aGt~~~ 315 (741)
T PRK11033 294 TGESIPVERATGEKV----PAGATSV 315 (741)
T ss_pred cCCCCCEecCCCCee----ccCCEEc
Confidence 888899999999988 5676554
No 340
>PRK08983 fliN flagellar motor switch protein; Validated
Probab=22.00 E-value=1.7e+02 Score=18.39 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=17.4
Q ss_pred eccCCCEEEeCCCCce--EEEECCEEE
Q 045997 24 SVKEGDTVLLPEYGGA--EVKLGDKKY 48 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~--ev~~~g~~y 48 (63)
.+++||.+.+.+.... ++.++|...
T Consensus 71 ~L~~GDVI~Ld~~~ddpv~v~Vng~~~ 97 (127)
T PRK08983 71 QLNQGSVVELDRVAGEPLDVMVNGTLI 97 (127)
T ss_pred CCCCCCEEEeCCCCCCCEEEEECCEEE
Confidence 6788898888876554 455677643
No 341
>PRK06437 hypothetical protein; Provisional
Probab=21.98 E-value=76 Score=17.32 Aligned_cols=12 Identities=50% Similarity=0.670 Sum_probs=7.2
Q ss_pred eccCCCEEEeCC
Q 045997 24 SVKEGDTVLLPE 35 (63)
Q Consensus 24 ~vk~GD~Vl~~~ 35 (63)
.++.||+|-+-.
T Consensus 51 ~L~dgD~Veiv~ 62 (67)
T PRK06437 51 NVKKEDDVLILE 62 (67)
T ss_pred EcCCCCEEEEEe
Confidence 566677765533
No 342
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=21.90 E-value=2.4e+02 Score=18.92 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=22.2
Q ss_pred eeeccCCCEEEeCCCCceEEEECCE-EEEE
Q 045997 22 PVSVKEGDTVLLPEYGGAEVKLGDK-KYHL 50 (63)
Q Consensus 22 p~~vk~GD~Vl~~~y~g~ev~~~g~-~y~i 50 (63)
.+.-++||.+++|+-+..++...++ +++.
T Consensus 137 tv~a~aGDvifiPKgssIefst~gea~fly 166 (176)
T COG4766 137 TVIAGAGDVIFIPKGSSIEFSTTGEAKFLY 166 (176)
T ss_pred eEecCCCcEEEecCCCeEEEeccceEEEEE
Confidence 3578999999999988878877665 4443
No 343
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=21.89 E-value=1.7e+02 Score=18.42 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=15.1
Q ss_pred CCCeEEeeeccCCCEEEeCC
Q 045997 16 VNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.++....+++++||+|....
T Consensus 51 ~~~dv~~LDlRIGD~Vkv~~ 70 (131)
T PF08605_consen 51 KNEDVKYLDLRIGDTVKVDG 70 (131)
T ss_pred CcccEeeeeeecCCEEEECC
Confidence 35566778888898888766
No 344
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=21.84 E-value=64 Score=24.32 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=11.7
Q ss_pred eccCCCEEEeCC--CCceEEEEC
Q 045997 24 SVKEGDTVLLPE--YGGAEVKLG 44 (63)
Q Consensus 24 ~vk~GD~Vl~~~--y~g~ev~~~ 44 (63)
.+++||+|++.. |...++.+.
T Consensus 13 ~a~pGD~I~L~~Gty~~~~i~~~ 35 (425)
T PF14592_consen 13 NAKPGDTIVLADGTYKDVEIVFK 35 (425)
T ss_dssp H--TT-EEEE-SEEEET-EEEE-
T ss_pred hCCCCCEEEECCceeecceEEEE
Confidence 578899999877 777677664
No 345
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.82 E-value=2.2e+02 Score=17.95 Aligned_cols=41 Identities=29% Similarity=0.392 Sum_probs=22.7
Q ss_pred eEEEEE---ECCCeeCCCCeEEee----eccCCCEEEeCCCCceEEEE
Q 045997 3 SGKVVA---VGPGARDVNGKFIPV----SVKEGDTVLLPEYGGAEVKL 43 (63)
Q Consensus 3 ~G~VvA---VG~G~~~~~G~~~p~----~vk~GD~Vl~~~y~g~ev~~ 43 (63)
.|+|+. -|.|+..-+|+...- +..+||+|..-...|.++.+
T Consensus 90 ~g~v~e~i~~g~g~Vkv~g~~Wra~~~~~l~~G~~V~Vv~v~G~~L~V 137 (140)
T COG1585 90 RGVVVEDIVEGRGRVKVEGESWRARSDEDLPAGDRVEVVGVEGATLVV 137 (140)
T ss_pred EEEEEeeccCCeEEEEECCeEeEEecCCCCCCCCEEEEEEeeCCEEEE
Confidence 455665 455554434444332 34478887777666665543
No 346
>PF07892 DUF1667: Protein of unknown function (DUF1667); InterPro: IPR012460 Hypothetical archaeal and bacterial proteins make up this family. A few proteins are annotated as being potential metal-binding proteins, and in fact the members of this family have four highly conserved cysteine residues, but no further literature evidence was found in this regard. ; PDB: 2JOV_A.
Probab=21.76 E-value=74 Score=18.67 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=10.8
Q ss_pred CeEEeeeccCCCEEEeCCCCceE
Q 045997 18 GKFIPVSVKEGDTVLLPEYGGAE 40 (63)
Q Consensus 18 G~~~p~~vk~GD~Vl~~~y~g~e 40 (63)
+-.+..+|+.||.|+ .+..|+-
T Consensus 54 ~i~v~aPV~~GdVi~-~ni~gtG 75 (82)
T PF07892_consen 54 KIEVKAPVKIGDVIV-KNIAGTG 75 (82)
T ss_dssp T-EE-----SSEEEE-ESTTSSS
T ss_pred CCEEcCCccCCCEEE-ecccCCC
Confidence 345667899999877 6666543
No 347
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=21.71 E-value=54 Score=20.94 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.5
Q ss_pred eccCCCEEEeCCCCc
Q 045997 24 SVKEGDTVLLPEYGG 38 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g 38 (63)
.+++||+|++-.|+-
T Consensus 77 l~~~GD~VII~sy~~ 91 (126)
T COG0853 77 LVQVGDLVIIMSYAQ 91 (126)
T ss_pred hCCCCCEEEEEEccc
Confidence 689999999877753
No 348
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=21.59 E-value=1.6e+02 Score=21.36 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=28.1
Q ss_pred EEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCC
Q 045997 7 VAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDES 55 (63)
Q Consensus 7 vAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~D 55 (63)
|-=|.|...-+|+ ....++||....+.++......++ +.+++.-+|
T Consensus 276 VieG~G~s~ig~~--~~~W~~gD~f~vPsW~~~~h~a~~-da~Lf~~~D 321 (335)
T TIGR02272 276 VVEGRGQVRIGDA--VFRFSPKDVFVVPSWHPVRFEASD-DAVLFSFSD 321 (335)
T ss_pred EEeCeEEEEECCE--EEEecCCCEEEECCCCcEecccCC-CeEEEEecC
Confidence 3346666544443 468999999999999664444333 344444443
No 349
>PF14627 DUF4453: Domain of unknown function (DUF4453)
Probab=21.52 E-value=1.6e+02 Score=18.28 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=17.7
Q ss_pred eeccCCCEEEeCCCCceEEEECCEEEEEEec
Q 045997 23 VSVKEGDTVLLPEYGGAEVKLGDKKYHLYED 53 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e 53 (63)
-.+.+||.|.|+... ..|=+|+.+.+
T Consensus 57 G~I~~Gd~v~~~h~~-----~ggWsyv~v~~ 82 (107)
T PF14627_consen 57 GTIQPGDTVRYSHIP-----WGGWSYVTVHD 82 (107)
T ss_pred eEecCCCEEEEeeec-----CCCeEEEEEec
Confidence 389999999997743 44555555444
No 350
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=21.47 E-value=44 Score=21.75 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=14.6
Q ss_pred ceEEEEEECCCeeCCCCe---EEeeeccCCCEEE
Q 045997 2 ISGKVVAVGPGARDVNGK---FIPVSVKEGDTVL 32 (63)
Q Consensus 2 ~~G~VvAVG~G~~~~~G~---~~p~~vk~GD~Vl 32 (63)
..|.+|.-|+= +|. ..+..+++||+|-
T Consensus 174 ~aGdvI~TGt~----~G~~~~~~~~~l~~Gd~v~ 203 (218)
T PF01557_consen 174 RAGDVILTGTP----TGVGARPPPVPLQPGDRVE 203 (218)
T ss_dssp -TTEEEEEEES----STSEGSSCCEEEBTT-EEE
T ss_pred CcceEEEcCCc----CCCCcccccccCCCCcEEE
Confidence 35666666652 121 2356788888765
No 351
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=21.46 E-value=55 Score=16.96 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=6.4
Q ss_pred eeccCCCEEEe
Q 045997 23 VSVKEGDTVLL 33 (63)
Q Consensus 23 ~~vk~GD~Vl~ 33 (63)
+.+++||+|.+
T Consensus 45 L~L~~G~~V~~ 55 (64)
T PF03459_consen 45 LGLKPGDEVYA 55 (64)
T ss_dssp CT-STT-EEEE
T ss_pred cCCCCCCEEEE
Confidence 35678998875
No 352
>PRK14105 selenophosphate synthetase; Provisional
Probab=21.46 E-value=1.5e+02 Score=20.90 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=21.9
Q ss_pred EEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceE
Q 045997 4 GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAE 40 (63)
Q Consensus 4 G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~e 40 (63)
+.|.++|+.. .-......++||.|+..++-|.+
T Consensus 148 ~svtg~g~~~----~~i~r~ga~~GD~I~vTg~lG~~ 180 (345)
T PRK14105 148 GAVTGVGKEE----DILTKAGAKEGDVLILTKPLGTQ 180 (345)
T ss_pred EEEEEEEccc----ceeeCCCCCCCCEEEEeCCChHH
Confidence 4677777421 11222369999999999988853
No 353
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=21.41 E-value=1.8e+02 Score=17.92 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=25.0
Q ss_pred CeEEeeeccCCCEEEeCC-----CCceEEEECCEEEEEEecC
Q 045997 18 GKFIPVSVKEGDTVLLPE-----YGGAEVKLGDKKYHLYEDE 54 (63)
Q Consensus 18 G~~~p~~vk~GD~Vl~~~-----y~g~ev~~~g~~y~i~~e~ 54 (63)
+...++.+++|+++.+.= ...-.+.++|.++.++..+
T Consensus 57 ~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~D 98 (159)
T PF00394_consen 57 GEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAAD 98 (159)
T ss_dssp STSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEET
T ss_pred cccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeec
Confidence 345677999999987632 2234677888877776654
No 354
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=21.27 E-value=64 Score=23.69 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=17.0
Q ss_pred EECCCeeCCCCeEEeeeccCCCEEE
Q 045997 8 AVGPGARDVNGKFIPVSVKEGDTVL 32 (63)
Q Consensus 8 AVG~G~~~~~G~~~p~~vk~GD~Vl 32 (63)
++|++. ..|+...-.+|+||+|-
T Consensus 9 ~lge~~--~EG~I~~W~~k~GD~V~ 31 (404)
T COG0508 9 DLGETM--TEGTIVEWLKKVGDKVK 31 (404)
T ss_pred CCCCcc--ceEEEEEEecCCCCeec
Confidence 345543 57888888999999885
No 355
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=21.23 E-value=1.6e+02 Score=24.98 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=29.2
Q ss_pred eEEeeeccCCCEEEeC-CCC--ceEEEECCEEEEEEecCCEEE
Q 045997 19 KFIPVSVKEGDTVLLP-EYG--GAEVKLGDKKYHLYEDESILG 58 (63)
Q Consensus 19 ~~~p~~vk~GD~Vl~~-~y~--g~ev~~~g~~y~i~~e~DIla 58 (63)
...-+++.+||++-.- .+. ++-+.-++..|+++..++.++
T Consensus 144 ~W~~~s~e~Gd~I~lig~~~~d~~~vvD~d~g~lIl~PD~Lis 186 (1100)
T KOG1805|consen 144 EWEEMSMEVGDTINLIGAKDSDKTFVVDDDNGLLILHPDDLIS 186 (1100)
T ss_pred CceeecccCCceEEeeecccCCCcEEEeCCCCeEEecCCcccc
Confidence 3456799999999873 344 555665677899999888775
No 356
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=21.19 E-value=2.4e+02 Score=21.30 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=33.8
Q ss_pred ceEEEEEECCCeeCCCCeEEee-eccCCCEEEeCCCC----ceEEEECCEEEEEEecCC
Q 045997 2 ISGKVVAVGPGARDVNGKFIPV-SVKEGDTVLLPEYG----GAEVKLGDKKYHLYEDES 55 (63)
Q Consensus 2 ~~G~VvAVG~G~~~~~G~~~p~-~vk~GD~Vl~~~y~----g~ev~~~g~~y~i~~e~D 55 (63)
..|+|+.|+.+.....| |. .++.|+.+.+..-. |.-|.++++..+++.-.+
T Consensus 26 ~~G~v~~v~g~~~~~~g---~~~~~~iGe~~~i~~~~~~~~~eVv~~~~~~~~l~~~~~ 81 (450)
T PRK06002 26 IGGTVSEVTASHYRVRG---LSRFVRLGDFVAIRADGGTHLGEVVRVDPDGVTVKPFEP 81 (450)
T ss_pred eeEEEEEEeceEEEEEc---CccCCCCCCEEEEECCCCcEEEEEEEEeCCeEEEEEccC
Confidence 36899999887765444 22 69999999994322 344566776666665444
No 357
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=21.18 E-value=59 Score=17.97 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=8.5
Q ss_pred eeeccCCCEEEeC
Q 045997 22 PVSVKEGDTVLLP 34 (63)
Q Consensus 22 p~~vk~GD~Vl~~ 34 (63)
...+++||+|-|.
T Consensus 40 l~~l~~Gd~V~F~ 52 (70)
T PF11604_consen 40 LAGLKPGDKVRFT 52 (70)
T ss_dssp ESS-STT-EEEEE
T ss_pred hhcCCCCCEEEEE
Confidence 3479999999973
No 358
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=21.10 E-value=1.1e+02 Score=20.99 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=17.1
Q ss_pred EEEEECC-CeeCCCCeEEeeeccCCCEEEeCCC
Q 045997 5 KVVAVGP-GARDVNGKFIPVSVKEGDTVLLPEY 36 (63)
Q Consensus 5 ~VvAVG~-G~~~~~G~~~p~~vk~GD~Vl~~~y 36 (63)
.+++.|. |..+ ..+++||.|+-.++
T Consensus 107 ~II~tgaaGsL~-------~~l~~GDiVi~~d~ 132 (272)
T PRK08202 107 TLIVTNAAGGLN-------PDFGPGDLMLISDH 132 (272)
T ss_pred EEEEecccccCC-------CCCCCCCEEEEchh
Confidence 4566665 3332 36999999998774
No 359
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=21.09 E-value=70 Score=20.85 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=9.8
Q ss_pred eccCCCEEEeCCC
Q 045997 24 SVKEGDTVLLPEY 36 (63)
Q Consensus 24 ~vk~GD~Vl~~~y 36 (63)
-.++||.|+|..-
T Consensus 3 ~yrvGD~Vy~~~~ 15 (164)
T cd04709 3 MYRVGDYVYFESS 15 (164)
T ss_pred EEecCCEEEEECC
Confidence 4688999998643
No 360
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=20.95 E-value=51 Score=18.07 Aligned_cols=12 Identities=42% Similarity=0.504 Sum_probs=5.6
Q ss_pred EEeeeccCCCEE
Q 045997 20 FIPVSVKEGDTV 31 (63)
Q Consensus 20 ~~p~~vk~GD~V 31 (63)
.....+++||.|
T Consensus 17 i~~~~v~~G~~V 28 (74)
T PF00364_consen 17 ITKWLVEEGDKV 28 (74)
T ss_dssp EEEESSSTTEEE
T ss_pred eeEEEECCCCEE
Confidence 333445555544
No 361
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=20.94 E-value=1.1e+02 Score=20.22 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=9.4
Q ss_pred eccCCCEEEeCC
Q 045997 24 SVKEGDTVLLPE 35 (63)
Q Consensus 24 ~vk~GD~Vl~~~ 35 (63)
.+++||+|+...
T Consensus 76 ~~~~Gd~V~~~~ 87 (326)
T cd08289 76 RFKPGDEVIVTS 87 (326)
T ss_pred CCCCCCEEEEcc
Confidence 478999998753
No 362
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=20.86 E-value=54 Score=15.03 Aligned_cols=28 Identities=18% Similarity=0.098 Sum_probs=15.0
Q ss_pred ECCCeeCCCCeEEeeeccCCCEEEeCCC
Q 045997 9 VGPGARDVNGKFIPVSVKEGDTVLLPEY 36 (63)
Q Consensus 9 VG~G~~~~~G~~~p~~vk~GD~Vl~~~y 36 (63)
+|++.....+..+...+.+||.+.+..+
T Consensus 4 Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~ 31 (36)
T PF00132_consen 4 IGDNVIIGPNAVIGGGVVIGDNCVIGPG 31 (36)
T ss_dssp EETTEEEETTEEEETTEEE-TTEEEETT
T ss_pred EcCCCEECCCcEecCCCEECCCCEEcCC
Confidence 4444444444555556677776666554
No 363
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=20.78 E-value=3.1e+02 Score=21.04 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=30.6
Q ss_pred ceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC-CCceEEEECCEEEEEE
Q 045997 2 ISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE-YGGAEVKLGDKKYHLY 51 (63)
Q Consensus 2 ~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~-y~g~ev~~~g~~y~i~ 51 (63)
..|+|++|+.+...-.| +..+..|+.+.|+. --|.-+.++++...++
T Consensus 6 ~~G~V~~v~~~ii~v~G---l~~~~~ge~~~i~~~~~g~vi~~~~~~v~~~ 53 (485)
T CHL00059 6 NTGTVLQVGDGIARIYG---LDEVMAGELVEFEDGTIGIALNLESNNVGVV 53 (485)
T ss_pred eeEEEEEEeccEEEEec---cccCCcCCEEEECCCCEEEEEEEcCCEEEEE
Confidence 36999999998866555 33799999999952 2233344554444433
No 364
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=20.72 E-value=90 Score=17.95 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=12.2
Q ss_pred eccCCCEEEeCCCC
Q 045997 24 SVKEGDTVLLPEYG 37 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~ 37 (63)
..++||...+.+|.
T Consensus 28 df~VGD~L~L~E~~ 41 (72)
T PF12961_consen 28 DFQVGDILVLREWD 41 (72)
T ss_pred CCCCCCEEEEEEec
Confidence 68999999998766
No 365
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=20.64 E-value=2.1e+02 Score=17.30 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=23.4
Q ss_pred eEEeeeccCCCEEEeCCCCceEEEEC-C--EEEEEEecC
Q 045997 19 KFIPVSVKEGDTVLLPEYGGAEVKLG-D--KKYHLYEDE 54 (63)
Q Consensus 19 ~~~p~~vk~GD~Vl~~~y~g~ev~~~-g--~~y~i~~e~ 54 (63)
+.....+++||.+.++...-..+.-. + -.++.++..
T Consensus 73 ~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~~~ 111 (146)
T smart00835 73 KVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTN 111 (146)
T ss_pred eEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEecC
Confidence 44567899999999998765555432 2 344444433
No 366
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=20.60 E-value=1.9e+02 Score=20.16 Aligned_cols=36 Identities=22% Similarity=0.124 Sum_probs=21.7
Q ss_pred eccCCCEEEeCC-CCceEEEECCEEEEEEecCCEEEEe
Q 045997 24 SVKEGDTVLLPE-YGGAEVKLGDKKYHLYEDESILGTL 60 (63)
Q Consensus 24 ~vk~GD~Vl~~~-y~g~ev~~~g~~y~i~~e~DIla~i 60 (63)
.+++||+|.+-. .+=..+..- ..|++++.+.+...+
T Consensus 315 ~~~vGd~v~~~p~H~c~t~~~~-~~~~~v~~~~v~~~w 351 (361)
T cd06821 315 RPEIGDVLYGIPRHICPTVALY-DEALVVRDGRIVGTW 351 (361)
T ss_pred CCCCCCEEEEeCCCcCcchhcc-CEEEEEECCEEEEEE
Confidence 478999998855 433333322 346667776665544
No 367
>cd04477 RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA1N is known to specifically interact with the p53 tumor suppressor, DNA polymerase alpha, and transcription factors. In addition to RPA1N, RPA1 contains three other OB folds: ssDNA-binding domain (DBD)-A, DBD-B, and DBD-C.
Probab=20.57 E-value=1.2e+02 Score=17.94 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=25.7
Q ss_pred eccCCCEEEeCCCCceEEEECCEEEEEEecCCEE
Q 045997 24 SVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESIL 57 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIl 57 (63)
.++.|..|-..+|.-..++ ++.++++-+=+++
T Consensus 65 ~l~~~sIirl~~y~~~~i~--~k~viiIldlevl 96 (97)
T cd04477 65 QLQRGSIIRLKRFICNVIK--GKRILIILDLEVV 96 (97)
T ss_pred CccCCcEEEECeEEEEEec--CcEEEEEEeeEEe
Confidence 7899999999999877765 7778888766554
No 368
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=20.56 E-value=90 Score=17.07 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.5
Q ss_pred eEEEECCEEEEEEecC
Q 045997 39 AEVKLGDKKYHLYEDE 54 (63)
Q Consensus 39 ~ev~~~g~~y~i~~e~ 54 (63)
-.-.++|++|.|+++.
T Consensus 19 ~k~~Y~GktYYFcse~ 34 (53)
T COG3350 19 YKSSYGGKTYYFCSEE 34 (53)
T ss_pred eeEEeCCEEEEEeCHH
Confidence 3456789999999875
No 369
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=20.55 E-value=90 Score=16.32 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=7.6
Q ss_pred eccCCCEEEeC
Q 045997 24 SVKEGDTVLLP 34 (63)
Q Consensus 24 ~vk~GD~Vl~~ 34 (63)
.++.||+|-+=
T Consensus 49 ~L~~gD~vei~ 59 (65)
T PRK06944 49 ALAAGDRLDLV 59 (65)
T ss_pred cCCCCCEEEEE
Confidence 57788877653
No 370
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=20.55 E-value=1.7e+02 Score=23.70 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=25.5
Q ss_pred eccCCCEEEeCCCCceEEEE---------CCEEEEEEecCCEEE
Q 045997 24 SVKEGDTVLLPEYGGAEVKL---------GDKKYHLYEDESILG 58 (63)
Q Consensus 24 ~vk~GD~Vl~~~y~g~ev~~---------~g~~y~i~~e~DIla 58 (63)
++++||.|.+..+.|+-.++ -+..+++++.+.|..
T Consensus 573 pf~vGD~I~v~g~~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~~ 616 (741)
T PRK11465 573 GMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITT 616 (741)
T ss_pred CcCCCCEEEECCeEEEEEEEeeeEEEEEcCCCCEEEEECCccee
Confidence 78999999999988863332 255667777777753
No 371
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=20.52 E-value=3.6e+02 Score=19.89 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=23.5
Q ss_pred ccCCCEEEeCC---CCceEEEECCEEEE-----EEe----cCCEEEEec
Q 045997 25 VKEGDTVLLPE---YGGAEVKLGDKKYH-----LYE----DESILGTLH 61 (63)
Q Consensus 25 vk~GD~Vl~~~---y~g~ev~~~g~~y~-----i~~----e~DIla~i~ 61 (63)
++...=|+|.+ +.+..|+ +|.+++ ++. +.++++.++
T Consensus 136 I~~~~DvLFdKsl~h~s~~V~-~G~K~VAl~dV~i~~k~~~~~~i~tI~ 183 (339)
T PF03336_consen 136 ISTSEDVLFDKSLNHESIIVE-EGRKIVALFDVIIKYKINYKNIIFTIP 183 (339)
T ss_pred eeccccEEEeccccccceEec-cCeEEEEEEEEEEEeeecCCCeEEEEE
Confidence 45566689988 3344444 778877 334 778887764
No 372
>KOG2241 consensus tRNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=20.45 E-value=66 Score=22.75 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=24.5
Q ss_pred ceEEEEEECCCeeCCCCe--EEeeeccCCCEEEeCCCCceE
Q 045997 2 ISGKVVAVGPGARDVNGK--FIPVSVKEGDTVLLPEYGGAE 40 (63)
Q Consensus 2 ~~G~VvAVG~G~~~~~G~--~~p~~vk~GD~Vl~~~y~g~e 40 (63)
.+|.|......-. ..=+ ..|-.-++||+|.|..|.|..
T Consensus 165 S~gMvlcaSs~d~-~~VE~l~pP~gs~pGdRv~fegfegeP 204 (255)
T KOG2241|consen 165 SQGMVLCASSPDK-SVVEPLAPPAGSKPGDRVTFEGFEGEP 204 (255)
T ss_pred cceeEEecCCccc-ceeeeccCCCCCCCCCeeeecCCCCCc
Confidence 4677887774221 0001 123378999999999999863
No 373
>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic). This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.
Probab=20.39 E-value=1.3e+02 Score=19.37 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=23.3
Q ss_pred eeccCCCEEEeCCCCceEEEE-CCEEEEEEec
Q 045997 23 VSVKEGDTVLLPEYGGAEVKL-GDKKYHLYED 53 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~g~ev~~-~g~~y~i~~e 53 (63)
...-.=+.+++|++-|..|.+ ||++|+-+.-
T Consensus 66 IKT~sR~s~IlP~~VG~ti~VyNGk~fv~v~I 97 (135)
T TIGR01025 66 IRTHCRDMIILPEMVGSTVGVYNGKEFVQVEI 97 (135)
T ss_pred eEEeccCCeeChhhcCcEEEEEcCCeeEEEEe
Confidence 344445778999999999975 8999876653
No 374
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=20.34 E-value=1e+02 Score=22.76 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=25.4
Q ss_pred EEEEECCCeeCCCCeEEeeeccCCCEEEeCC----CCceEEEE
Q 045997 5 KVVAVGPGARDVNGKFIPVSVKEGDTVLLPE----YGGAEVKL 43 (63)
Q Consensus 5 ~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~----y~g~ev~~ 43 (63)
.++.||.+..-..|..+ .+++||..++.. -++|.|.+
T Consensus 249 ~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~~ 289 (341)
T TIGR03536 249 IVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVAV 289 (341)
T ss_pred eeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEEE
Confidence 46778877766666555 777887777765 34677776
No 375
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=20.30 E-value=3e+02 Score=19.62 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=15.9
Q ss_pred EEeeeccCCCEEEeCC----CCceEEEE
Q 045997 20 FIPVSVKEGDTVLLPE----YGGAEVKL 43 (63)
Q Consensus 20 ~~p~~vk~GD~Vl~~~----y~g~ev~~ 43 (63)
.+-.-+++||+|+... ..|..|+.
T Consensus 348 ~V~~GL~~Gd~VVv~G~~~l~dG~~V~~ 375 (397)
T PRK15030 348 LVTEGLKAGDRVVISGLQKVRPGVQVKA 375 (397)
T ss_pred EEeCCCCCCCEEEECCcccCCCcCEeee
Confidence 3444688888888766 44666654
No 376
>PRK00807 50S ribosomal protein L24e; Validated
Probab=20.26 E-value=1.6e+02 Score=15.60 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=13.0
Q ss_pred CCCCceEEEECCEEEEEEec
Q 045997 34 PEYGGAEVKLGDKKYHLYED 53 (63)
Q Consensus 34 ~~y~g~ev~~~g~~y~i~~e 53 (63)
+..+-.-|..||+.|.+++.
T Consensus 13 pg~G~~~vr~Dgkv~~Fcs~ 32 (52)
T PRK00807 13 PGTGKMYVKKDGTILYFCSS 32 (52)
T ss_pred CCCCeEEEEeCCcEEEEeCH
Confidence 33433447788888888764
No 377
>TIGR01050 rpsS_bact ribosomal protein S19, bacterial/organelle. the Archaea may be designated S15 or S19.
Probab=20.19 E-value=1.2e+02 Score=18.08 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=22.7
Q ss_pred eeccCCCEEEeCCCCceEEEE-CCEEEEEEec
Q 045997 23 VSVKEGDTVLLPEYGGAEVKL-GDKKYHLYED 53 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~g~ev~~-~g~~y~i~~e 53 (63)
...-.=+.+++|+|-|..|.+ ||++|+-+.-
T Consensus 31 ikT~sR~s~IlP~~vg~~i~VynGk~fv~v~I 62 (92)
T TIGR01050 31 IKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYI 62 (92)
T ss_pred eEEEecccEEChHHCCcEEEEEcCceEEEEEe
Confidence 334444667889999999975 8999986553
No 378
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=20.18 E-value=88 Score=21.72 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=15.1
Q ss_pred eEEeeeccCCCEEEeCC
Q 045997 19 KFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 19 ~~~p~~vk~GD~Vl~~~ 35 (63)
+.+++.+++||.++|..
T Consensus 207 ~~v~~~lkaGd~~~f~~ 223 (288)
T TIGR01762 207 SAVPMQMKAGQFIIFWS 223 (288)
T ss_pred ceeeeeeCCceEEEECC
Confidence 46899999999999976
No 379
>smart00357 CSP Cold shock protein domain. RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.
Probab=20.06 E-value=67 Score=16.10 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=9.6
Q ss_pred eeccCCCEEEeC
Q 045997 23 VSVKEGDTVLLP 34 (63)
Q Consensus 23 ~~vk~GD~Vl~~ 34 (63)
..+..||+|++.
T Consensus 35 ~~~~~Gd~V~~~ 46 (64)
T smart00357 35 KSLREGDEVEFK 46 (64)
T ss_pred CcCCCCCEEEEE
Confidence 357889999986
Done!