BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045998
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 162/281 (57%), Gaps = 13/281 (4%)
Query: 133 PSSLLPSDFVQKLDKVK---WILGSSFYELEENVVASMATFTP-IIPVGPLVSPFMLGKQ 188
P+ ++ F++ D+V IL ++F ELE +V+ ++++ P I P+GPL S Q
Sbjct: 208 PNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTIPSIYPIGPLPSLLKQTPQ 267
Query: 189 ENATAPSLDMWSTAEECSCIEIHQWLNKKPPSSVIYISFGSLLVLSQNQIDSIAAALINT 248
+ SLD E+ C++ WL K P SV+Y++FGS V++ Q+ A L N
Sbjct: 268 IHQLD-SLDSNLWKEDTECLD---WLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANC 323
Query: 249 KRPFLWVIRSQENKEGGVLRAG-FLEETKDRGLVVKWCSQEKVLMHAAVSCFLTHCGWNS 307
K+ FLW+IR G V+ + F E DRGL+ WC Q+KVL H ++ FLTHCGWNS
Sbjct: 324 KKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNS 383
Query: 308 TLETVAAGVPVIAYPEWTDQPTDAKLLVDVFKIGVRMRNEEDGTLSIQQVQRCIDEATQG 367
T E++ AGVP++ +P + DQPTD + + + ++IG+ E D + +++ + I+E G
Sbjct: 384 TTESICAGVPMLCWPFFADQPTDCRFICNEWEIGM----EIDTNVKREELAKLINEVIAG 439
Query: 368 LNATQMKKRAVAWKEAAKKALEDGGSSDANINRFINEITRK 408
+MK++A+ K+ A++ GG S N+N+ I ++ K
Sbjct: 440 DKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVLLK 480
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 160 bits (406), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 148/271 (54%), Gaps = 33/271 (12%)
Query: 142 VQKLDKVKWILGSSFYELEENVVASMA----TFTPIIPVGPLVSPFMLGKQENATAPSLD 197
++ + + IL ++F+ELE N + ++ P+ PVGPLV+ +GKQE
Sbjct: 201 TKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVN---IGKQEA------- 250
Query: 198 MWSTAEECSCIEIHQWLNKKPPSSVIYISFGSLLVLSQNQIDSIAAALINTKRPFLWVIR 257
EE C+ +WL+ +P SV+Y+SFGS L+ Q++ +A L ++++ FLWVIR
Sbjct: 251 --KQTEESECL---KWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIR 305
Query: 258 S-------------QENKEGGVLRAGFLEETKDRGLVVK-WCSQEKVLMHAAVSCFLTHC 303
S + L GFLE TK RG V+ W Q +VL H + FLTHC
Sbjct: 306 SPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHC 365
Query: 304 GWNSTLETVAAGVPVIAYPEWTDQPTDAKLLVDVFKIGVRMRNEEDGTLSIQQVQRCIDE 363
GWNSTLE+V +G+P+IA+P + +Q +A LL + + +R R +DG + ++V R +
Sbjct: 366 GWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKG 425
Query: 364 ATQGLNATQMKKRAVAWKEAAKKALEDGGSS 394
+G ++ + KEAA + L+D G+S
Sbjct: 426 LMEGEEGKGVRNKMKELKEAACRVLKDDGTS 456
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 163/348 (46%), Gaps = 19/348 (5%)
Query: 64 CIITNPFMPWVPDVAAEHKIPCAVLWIQACAAY--YIYYHYFKHPQLFPSLENPNEAVHL 121
C++T+ F + D+A E LW + ++Y + + + L
Sbjct: 120 CLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVL 179
Query: 122 PAMPSLLVNELPSSLLPS---DFVQKLDKVKWILGSSFYELEENVVASMATFTPIIPVGP 178
P P L ++LP ++ F L K +G + S AT P+I
Sbjct: 180 PGFPELKASDLPEGVIKDIDVPFATMLHK----MGLELPRANAVAINSFATIHPLIE-NE 234
Query: 179 LVSPFMLGKQENATAPSLDMWSTAEECSCIEIHQWLNKKPPSSVIYISFGSLLVLSQNQI 238
L S F L + ++E C+E WL++ SSV+YISFGS++ +++
Sbjct: 235 LNSKFKLLLNVGPFNLTTPQRKVSDEHGCLE---WLDQHENSSVVYISFGSVVTPPPHEL 291
Query: 239 DSIAAALINTKRPFLWVIRSQENKEGGVLRAGFLEETKDRGLVVKWCSQEKVLMHAAVSC 298
++A +L PF+W R ++ L GFLE TK +G +V W Q ++L H++V
Sbjct: 292 TALAESLEECGFPFIWSFRGDPKEK---LPKGFLERTKTKGKIVAWAPQVEILKHSSVGV 348
Query: 299 FLTHCGWNSTLETVAAGVPVIAYPEWTDQPTDAKLLVDVFKIGVRMRNEEDGTLSIQQVQ 358
FLTH GWNS LE + GVP+I+ P + DQ + L V +IGV + N G L+ + ++
Sbjct: 349 FLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDN---GVLTKESIK 405
Query: 359 RCIDEATQGLNATQMKKRAVAWKEAAKKALEDGGSSDANINRFINEIT 406
+ ++ M+++ V KE+A KA+E G+S + I +T
Sbjct: 406 KALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVT 453
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 175/360 (48%), Gaps = 38/360 (10%)
Query: 64 CIITNPFMPWVPDVAAEHKIPCAVLWIQA--CAAYYIYYHYFKHPQLFPSLENPNEAV-- 119
C++ + F+ + D+AAE + W + ++Y + ++ + +
Sbjct: 115 CLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLN 174
Query: 120 HLPAMPSLLVNELPSSL----LPSDFVQKLDKVKWILG-------SSFYELEENVVASMA 168
+P M + +L + L S F + L ++ +L +SF EL++++ +
Sbjct: 175 FIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLK 234
Query: 169 T-FTPIIPVGPLVSPFMLGKQENATAPSLDMWSTAEECSCIEIHQWLNKKPPSSVIYISF 227
+ + +GP N P + +T C+ QWL ++ P+SV+YISF
Sbjct: 235 SKLKTYLNIGPF----------NLITPPPVVPNT---TGCL---QWLKERKPTSVVYISF 278
Query: 228 GSLLVLSQNQIDSIAAALINTKRPFLWVIRSQENKEGGVLRAGFLEETKDRGLVVKWCSQ 287
G++ ++ +++ AL ++ PF+W +R + L GFLE+T+ G+VV W Q
Sbjct: 279 GTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVH---LPEGFLEKTRGYGMVVPWAPQ 335
Query: 288 EKVLMHAAVSCFLTHCGWNSTLETVAAGVPVIAYPEWTDQPTDAKLLVDVFKIGVRMRNE 347
+VL H AV F+THCGWNS E+VA GVP+I P + DQ + +++ DV +IGVR+
Sbjct: 336 AEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI--- 392
Query: 348 EDGTLSIQQVQRCIDEATQGLNATQMKKRAVAWKEAAKKALEDGGSSDANINRFINEITR 407
E G + + C D+ ++++ A +E A +A+ GSS N ++ +++
Sbjct: 393 EGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSK 452
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 177/354 (50%), Gaps = 43/354 (12%)
Query: 76 DVAAEHKIPCAVLWIQACAAYYIYYHYFKHPQLFPSLENPNEAVHLPAMPSLLVNELPSS 135
DV E IP + L++ + + K+ Q+ ++ + L +P + N++PS+
Sbjct: 129 DVGNEFGIP-SYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGI-SNQVPSN 186
Query: 136 LLPS-------------DFVQKLDKVKWILGSSFYELEENVVASM----ATFTPIIPVGP 178
+LP ++ K I+ ++F +LE++ + ++ PI VGP
Sbjct: 187 VLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGP 246
Query: 179 LVSPFMLGKQENATAPSLDMWSTAEECSCIEIHQWLNKKPPSSVIYISFGSLLV-LSQNQ 237
L+ L Q N P LD + I +WL+++P SV+++ FGS+ V +Q
Sbjct: 247 LLD---LKGQPN---PKLD------QAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQ 294
Query: 238 IDSIAAALINTKRPFLWVIRSQENKEGGVLRAGFLE--ETKDRGLVVKWCSQEKVLMHAA 295
I IA L ++ FLW + E V GFLE E + +G++ W Q +VL H A
Sbjct: 295 IREIALGLKHSGVRFLW----SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKA 350
Query: 296 VSCFLTHCGWNSTLETVAAGVPVIAYPEWTDQPTDAKLLVDVFKIGVRMR---NEEDGTL 352
+ F++HCGWNS LE++ GVP++ +P + +Q +A LV + +G+ +R + +
Sbjct: 351 IGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVV 410
Query: 353 SIQQVQRCIDEATQGLNATQMKKRAVAWKEAAKKALEDGGSSDANINRFINEIT 406
+ +++++ + + + + K+ KE ++ A+ DGGSS ++ + I++IT
Sbjct: 411 AAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDIT 462
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 177/354 (50%), Gaps = 43/354 (12%)
Query: 76 DVAAEHKIPCAVLWIQACAAYYIYYHYFKHPQLFPSLENPNEAVHLPAMPSLLVNELPSS 135
DV E IP + L++ + + K+ Q+ ++ + L +P + N++PS+
Sbjct: 129 DVGNEFGIP-SYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGI-SNQVPSN 186
Query: 136 LLPS-------------DFVQKLDKVKWILGSSFYELEENVVASM----ATFTPIIPVGP 178
+LP ++ K I+ ++F +LE++ + ++ PI VGP
Sbjct: 187 VLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGP 246
Query: 179 LVSPFMLGKQENATAPSLDMWSTAEECSCIEIHQWLNKKPPSSVIYISFGSLLV-LSQNQ 237
L+ L Q N P LD + I +WL+++P SV+++ FGS+ V +Q
Sbjct: 247 LLD---LKGQPN---PKLD------QAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQ 294
Query: 238 IDSIAAALINTKRPFLWVIRSQENKEGGVLRAGFLE--ETKDRGLVVKWCSQEKVLMHAA 295
I IA L ++ FLW + E V GFLE E + +G++ W Q +VL H A
Sbjct: 295 IREIALGLKHSGVRFLW----SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKA 350
Query: 296 VSCFLTHCGWNSTLETVAAGVPVIAYPEWTDQPTDAKLLVDVFKIGVRMR---NEEDGTL 352
+ F++HCGWNS LE++ GVP++ +P + +Q +A LV + +G+ +R + +
Sbjct: 351 IGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVV 410
Query: 353 SIQQVQRCIDEATQGLNATQMKKRAVAWKEAAKKALEDGGSSDANINRFINEIT 406
+ +++++ + + + + K+ KE ++ A+ DGGSS ++ + I++IT
Sbjct: 411 AAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDIT 462
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 209 EIHQWLNKKPPSSVIYISFGSLLV-LSQNQIDSIAAALINTKRPFLWVIRSQENKEGGVL 267
E ++ + V+ S GS + ++ + + IA+AL + LW + G+
Sbjct: 10 EXEDFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRFDGNKPDTLGL- 68
Query: 268 RAGFLEETKDRGLVVKWCSQEKVLMHAAVSCFLTHCGWNSTLETVAAGVPVIAYPEWTDQ 327
T+ + KW Q +L H F+TH G N E + G+P + P + DQ
Sbjct: 69 ------NTR----LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
Query: 328 PTD 330
P +
Sbjct: 119 PDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 281 VVKWCSQEKVLMHAAVSCFLTHCGWNSTLETVAAGVPVIAYPEWTDQPTDAKLLVDV 337
V +W Q +L A S F+TH G ST+E ++ VP++A P+ +Q +A+ +V++
Sbjct: 309 VHQWVPQLDILTKA--SAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 281 VVKWCSQEKVLMHAAVSCFLTHCGWNSTLETVAAGVPVIAYPEWTDQPTDAKLLVDVFKI 340
VV+W +L + H G + L +AAGVP P + Q T+ +L I
Sbjct: 292 VVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTG-LGI 348
Query: 341 GVRMRNEEDGTLSIQQVQRCIDEATQGLNATQMKKR 376
G + E G+L +Q +R +D+A GL ++ R
Sbjct: 349 GF---DAEAGSLGAEQCRRLLDDA--GLREAALRVR 379
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 281 VVKWCSQEKVLMHAAVSCFLTHCGWNSTLETVAAGVPVIAYPEWTDQPTDAKLLVDVFKI 340
VV+W +L + H G + L +AAGVP P + Q T+ +L I
Sbjct: 292 VVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTG-LGI 348
Query: 341 GVRMRNEEDGTLSIQQVQRCIDEATQGLNATQMKKR 376
G + E G+L +Q +R +D+A GL ++ R
Sbjct: 349 GF---DAEAGSLGAEQCRRLLDDA--GLREAALRVR 379
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 272 LEETKDRGLVVKWCSQEKVLMHAAVSCFLTHCGWNSTLETVAAGVPVIAYPEWTDQPTDA 331
L E D V W Q +L A F+TH G + E +A P+IA P+ DQ +A
Sbjct: 278 LGELPDNVEVHDWVPQLAILRQA--DLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
Query: 332 KLL 334
+L
Sbjct: 336 DML 338
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 213 WLNKKPPSSVIYISFGSLLVLSQNQIDSIAAALINTKRPFLWVIRSQENKEGGVLRAGFL 272
W +P + V+ +S G+ + A A +T + I GG L L
Sbjct: 224 WQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVXAI-------GGFLDPAVL 276
Query: 273 EETKDRGLVVKWCSQEKVLMHAAVSCFLTHCGWNSTLETVAAGVPVIAYPEWTDQPTDAK 332
+W VL HA +C LTH + LE AAGVP++ P + + +
Sbjct: 277 GPLPPNVEAHQWIPFHSVLAHAR-AC-LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSA 334
Query: 333 LLVDVFKIGVRMRNEEDGTLSIQQ 356
V +G +R ++ SI++
Sbjct: 335 ERVIELGLGSVLRPDQLEPASIRE 358
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 302 HCGWNSTLETVAAGVPVIAYPEWTDQPTDAKLLVDVFKIGVRMRNEEDGTLSIQQVQRCI 361
HCGW + +A G I PE P+++ D+ K+ +R R + ++ + I
Sbjct: 406 HCGWLGLMSGIATGADYIFIPERP--PSESNWKDDLKKVCLRHREKGRRKTTVIVAEGAI 463
Query: 362 DEATQGLNATQMK 374
D+ + + ++K
Sbjct: 464 DDQLNPITSEEVK 476
>pdb|4EOG|A Chain A, Crystal Structure Of Csx1 Of Pyrococcus Furiosus
Length = 480
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 305 WNSTLETVAAGVPVI---AYPEWTDQPTDAKLLVDVFKIGVRMRNEEDGTLSIQQVQRCI 361
WN+ + +VA G P++ YP D ++ F +G+ + EDG +++ ++ +
Sbjct: 242 WNAFISSVANGFPLVFASFYPNIRDVEDYLNKKLEEFLVGIEVGEREDGKPYVKR-EKAL 300
Query: 362 DEATQGLNATQM 373
D + + NA+++
Sbjct: 301 DRSFK--NASKL 310
>pdb|3FAK|A Chain A, Structural And Functional Analysis Of A Hormone-Sensitive
Lipase Like Este5 From A Metagenome Library
pdb|3G9T|A Chain A, Crystal Structure Of Este5, Was Soaked By P-Nitrophenyl
Butyrate For 5sec
pdb|3G9U|A Chain A, Crystal Structure Of Este5, Was Soaked By P-nitrophenyl
Butyrate For 5min
pdb|3G9Z|A Chain A, Crystal Structure Of Este5, Was Soaked By P-Nitrophenyl
Caprylate
pdb|3H17|A Chain A, Crystal Structure Of Este5-Pmsf (I)
pdb|3H18|A Chain A, Crystal Structure Of Este5-pmsf (ii)
pdb|3H19|A Chain A, Crystal Structure Of Este5, Was Soaked By Methyl Alcohol
pdb|3H1A|A Chain A, Crystal Structure Of Este5, Was Soaked By Ethyl Alcohol
pdb|3H1B|A Chain A, Crystal Structure Of Este5, Was Soaked By Isopropyl
Alcohol
pdb|3L1H|A Chain A, Crystal Structure Of Este5, Was Soaked By Fecl3
pdb|3L1I|A Chain A, Crystal Structure Of Este5, Was Soaked By Cuso4
pdb|3L1J|A Chain A, Crystal Structure Of Este5, Was Soaked By Znso4
Length = 322
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 90 IQACAAYYIYYHYFKHPQLFPSLENPNEAVHLPAMPSLLVNELPSSLLPSDFVQKLDKVK 149
I AA Y+ KHP P+ N L +P LL++ +L D ++ K K
Sbjct: 212 INKMAARYLNGADAKHPYASPNFAN------LKGLPPLLIHVGRDEVLLDDSIKLDAKAK 265
Query: 150 WILGSSFYELEENVVASMATFTPIIPVG 177
S E+ ++++ F P++P G
Sbjct: 266 ADGVKSTLEIWDDMIHVWHAFHPMLPEG 293
>pdb|3V9A|A Chain A, Crystal Structure Of EsteraseLIPASE FROM UNCULTURED
BACTERIUM
Length = 309
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 90 IQACAAYYIYYHYFKHPQLFPSLENPNEAVHLPAMPSLLVNELPSSLLPSDFVQKLDKVK 149
I AA Y+ KHP P+ N L +P LL++ +L D ++ K K
Sbjct: 199 INKMAARYLNGADAKHPYASPNFAN------LKGLPPLLIHVGRDEVLLDDSIKLDAKAK 252
Query: 150 WILGSSFYELEENVVASMATFTPIIPVG 177
S E+ ++++ F P++P G
Sbjct: 253 ADGVKSTLEIWDDMIHVWHAFHPMLPEG 280
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 122 PAMPSLLVNELPSS--------LLPSDFVQKLDKVKWILGSSFYELEENVVASMATFTPI 173
P LV+ LP ++P+D+ +K+ KV G ++EN+V + T P
Sbjct: 101 PTQEDWLVSVLPEGSRVGVDPLIIPTDYWKKMAKVLRSAGHHLIPVKENLVDKIWTDRPE 160
Query: 174 IPVGPLVS 181
P PL++
Sbjct: 161 RPCKPLLT 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,536,619
Number of Sequences: 62578
Number of extensions: 442475
Number of successful extensions: 1002
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 965
Number of HSP's gapped (non-prelim): 33
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)