BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045999
         (438 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P6W|A Chain A, Crystal Structure Of A Glycosyltransferase Involved In The
           Glycosylation Of The Major Capsid Of Pbcv-1
 pdb|2P73|A Chain A, Crystal Structure Of A Glycosyltransferase Involved In The
           Glycosylation Of The Major Capsid Of Pbcv-1
 pdb|2P72|A Chain A, Crystal Structure Of A Glycosyltransferase Involved In The
           Glycosylation Of The Major Capsid Of Pbcv-1
 pdb|2P72|B Chain B, Crystal Structure Of A Glycosyltransferase Involved In The
           Glycosylation Of The Major Capsid Of Pbcv-1
          Length = 213

 Score = 32.3 bits (72), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 132 GSQPKPCKNPIGDH-----LLLRFFKNKVD-YCRIHGYDIFYNNVLLNPKMNS--FWAKL 183
            S   PC   +  H     +  R  K  V+ YC IHGY+ +Y              + + 
Sbjct: 1   ASMTTPCITILSGHFPKETIYARKTKELVEEYCSIHGYNFYYEESEPLETEEHALHFRRS 60

Query: 184 PVVKAAMLAHPEAEWIWWVDSDA 206
            +++ A    P  EW  W+DSD 
Sbjct: 61  WIIQQAAEKFPSTEWFLWLDSDV 83


>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide
           Dissociation Inhibitor (Gdi) In Complex With A
           Geranylgeranyl (Gg) Peptide
          Length = 449

 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 301 LLYTEKDKYYDNIYLEGEFYFEGYWLEIVPTVRT 334
           LLYTE  +Y D   +EG F ++G  +  VP+  T
Sbjct: 93  LLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTET 126


>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
          Length = 447

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 301 LLYTEKDKYYDNIYLEGEFYFEGYWLEIVPTVRT 334
           LLYTE  +Y D   +EG F ++G  +  VP+  T
Sbjct: 91  LLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTET 124


>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
          Length = 433

 Score = 28.9 bits (63), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 301 LLYTEKDKYYDNIYLEGEFYFEGYWLEIVPTVRT 334
           LLYTE  +Y D   +EG F ++G  +  VP+  T
Sbjct: 93  LLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTET 126


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,428,882
Number of Sequences: 62578
Number of extensions: 624484
Number of successful extensions: 1159
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 12
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)