Query 045999
Match_columns 438
No_of_seqs 231 out of 430
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03181 glycosyltransferase; 100.0 9E-147 2E-151 1114.4 38.2 433 1-435 1-453 (453)
2 PLN03182 xyloglucan 6-xylosylt 100.0 3E-115 6E-120 884.0 26.7 382 26-429 18-409 (429)
3 KOG4748 Subunit of Golgi manno 100.0 1.1E-61 2.3E-66 488.5 11.6 274 85-417 59-364 (364)
4 PF05637 Glyco_transf_34: gala 100.0 7E-52 1.5E-56 400.6 3.4 211 124-380 2-236 (239)
5 PF03314 DUF273: Protein of un 99.6 1.2E-15 2.7E-20 145.1 6.7 137 155-321 2-141 (222)
6 KOG4748 Subunit of Golgi manno 98.6 1.4E-08 3E-13 104.2 2.1 75 237-313 214-289 (364)
7 PF03407 Nucleotid_trans: Nucl 97.7 0.00012 2.7E-09 68.7 8.4 125 155-306 16-156 (212)
8 PF01501 Glyco_transf_8: Glyco 96.7 0.0039 8.3E-08 58.3 6.7 108 176-303 78-203 (250)
9 cd02537 GT8_Glycogenin Glycoge 96.6 0.014 3.1E-07 56.5 10.2 88 179-304 78-169 (240)
10 cd06914 GT8_GNT1 GNT1 is a fun 96.6 0.032 6.9E-07 56.2 12.4 149 123-311 29-179 (278)
11 PLN00176 galactinol synthase 96.1 0.19 4.2E-06 51.9 15.4 117 241-414 182-302 (333)
12 cd04194 GT8_A4GalT_like A4GalT 96.1 0.068 1.5E-06 51.4 11.4 110 176-304 75-198 (248)
13 cd06430 GT8_like_2 GT8_like_2 93.7 0.3 6.5E-06 50.0 8.6 132 154-307 52-217 (304)
14 cd00505 Glyco_transf_8 Members 92.9 0.6 1.3E-05 45.1 9.1 108 179-305 78-200 (246)
15 cd06429 GT8_like_1 GT8_like_1 91.1 0.99 2.1E-05 44.9 8.4 103 175-303 92-199 (257)
16 cd06431 GT8_LARGE_C LARGE cata 89.5 4.2 9E-05 40.9 11.4 134 158-305 52-208 (280)
17 COG1442 RfaJ Lipopolysaccharid 85.2 2.7 5.8E-05 43.5 7.2 111 177-304 78-201 (325)
18 PF03452 Anp1: Anp1; InterPro 78.6 1.1 2.5E-05 45.1 1.7 26 185-212 134-159 (269)
19 PLN02718 Probable galacturonos 78.1 8.4 0.00018 43.0 8.2 34 177-210 398-432 (603)
20 PRK15171 lipopolysaccharide 1, 77.1 11 0.00024 38.7 8.4 132 155-303 74-226 (334)
21 PLN02769 Probable galacturonos 70.0 15 0.00032 41.4 7.6 82 176-261 431-528 (629)
22 PF13641 Glyco_tranf_2_3: Glyc 58.6 20 0.00043 32.9 5.3 31 180-212 72-102 (228)
23 cd04190 Chitin_synth_C C-termi 53.4 49 0.0011 31.6 7.2 76 128-210 1-88 (244)
24 PTZ00260 dolichyl-phosphate be 50.1 2.9E+02 0.0063 28.2 12.6 27 182-209 150-176 (333)
25 cd04191 Glucan_BSP_ModH Glucan 48.6 1.3E+02 0.0029 29.5 9.5 28 182-209 81-109 (254)
26 cd04186 GT_2_like_c Subfamily 46.1 85 0.0018 26.6 6.9 31 179-210 59-89 (166)
27 PLN02742 Probable galacturonos 45.7 1.3E+02 0.0029 33.4 9.7 85 177-262 333-436 (534)
28 cd06435 CESA_NdvC_like NdvC_li 43.2 1.6E+02 0.0034 27.2 8.7 49 156-209 49-98 (236)
29 PLN02910 polygalacturonate 4-a 42.9 57 0.0012 36.9 6.5 80 182-265 460-565 (657)
30 TIGR03758 conj_TIGR03758 integ 42.1 19 0.00041 29.2 2.0 24 28-51 18-41 (65)
31 PF13704 Glyco_tranf_2_4: Glyc 40.6 43 0.00093 27.2 4.0 30 183-212 59-88 (97)
32 PRK11204 N-glycosyltransferase 37.3 1.2E+02 0.0026 31.3 7.6 28 181-209 121-148 (420)
33 PF13712 Glyco_tranf_2_5: Glyc 36.1 59 0.0013 31.3 4.8 71 127-212 1-71 (217)
34 PRK13915 putative glucosyl-3-p 35.1 1.7E+02 0.0037 29.6 8.1 29 182-211 103-131 (306)
35 cd02520 Glucosylceramide_synth 34.4 2E+02 0.0042 26.1 7.7 30 178-208 70-99 (196)
36 PF04765 DUF616: Protein of un 34.1 46 0.001 34.4 3.8 49 242-310 238-287 (305)
37 PF13506 Glyco_transf_21: Glyc 33.6 50 0.0011 30.6 3.7 34 176-209 12-45 (175)
38 cd06432 GT8_HUGT1_C_like The C 32.5 2.6E+02 0.0057 27.5 8.7 19 193-211 92-111 (248)
39 TIGR03124 ctirate_citX holo-AC 30.4 2.8E+02 0.006 26.2 8.1 52 110-168 18-70 (165)
40 PLN02829 Probable galacturonos 29.3 95 0.0021 35.2 5.5 36 175-210 435-471 (639)
41 PLN03153 hypothetical protein; 27.4 54 0.0012 36.3 3.2 24 186-209 200-224 (537)
42 cd02525 Succinoglycan_BP_ExoA 26.9 1.5E+02 0.0033 27.1 5.7 25 184-209 71-95 (249)
43 PF11660 DUF3262: Protein of u 26.8 56 0.0012 26.8 2.5 25 27-51 18-42 (76)
44 PF01539 HCV_env: Hepatitis C 26.2 22 0.00048 34.2 0.0 34 365-402 23-56 (190)
45 cd06437 CESA_CaSu_A2 Cellulose 23.1 4.1E+02 0.0089 24.5 7.9 27 182-209 75-101 (232)
46 PRK10063 putative glycosyl tra 21.9 5E+02 0.011 25.2 8.5 28 182-210 70-97 (248)
47 cd02978 KaiB_like KaiB-like fa 21.2 1.5E+02 0.0032 24.4 3.9 29 147-175 15-46 (72)
48 cd04860 AE_Prim_S AE_Prim_S: p 20.8 1.2E+02 0.0025 30.1 3.8 42 371-415 87-128 (232)
49 TIGR02690 resist_ArsH arsenica 20.6 4.1E+02 0.009 26.0 7.6 41 123-170 25-65 (219)
50 PLN03193 beta-1,3-galactosyltr 20.1 7.6E+02 0.016 26.8 9.9 95 104-210 154-251 (408)
No 1
>PLN03181 glycosyltransferase; Provisional
Probab=100.00 E-value=9e-147 Score=1114.41 Aligned_cols=433 Identities=72% Similarity=1.318 Sum_probs=416.3
Q ss_pred CCcccccC-CCCCCCC--ccccccCCccccchhHhHhHHHHHHHHHHHhhhccCCCCCCCCCCcccc--ccccccCCCCC
Q 045999 1 MVSPELSH-QYSPMAK--PHVRNKTHPCLTDGFLFLGGAFFALLIVWSFSSLLNSAPRFDSTPLSEA--KATSEARSPGC 75 (438)
Q Consensus 1 ~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 75 (438)
|++||.+. ++|||++ ..+++|++++++|+++|++||++|+||||++|||++|.|+ ++|.+++ ..+.++...++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ga~~a~ll~~~~~s~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (453)
T PLN03181 1 MAAPEASPFHYSPMPMGKYGGARTRASCFSDGVLFLGGAVVAFLLVWSLASILSPSPN--PSLVSSSTNARASSCPVAGS 78 (453)
T ss_pred CCCcccCccccccccccccCCCCCCccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCC--CCccccccccccccccccCC
Confidence 89999998 8899888 8899999999999999999999999999999999999888 5665544 55667777888
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCChHHHHHHHhhcCCCCCCCCCCcEEEEEccCCCCCCCCchHHHHHHHHHhHH
Q 045999 76 AANLRYDPPDETFYDDQELSYSIEKKIEDWDEKRKRWLKLHPSFAAGARERVVLVTGSQPKPCKNPIGDHLLLRFFKNKV 155 (438)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~~~y~~~~~~~~wd~~R~~wl~~~p~f~~~~~prIvIVT~s~p~~~~~~~gd~~l~~ai~Nk~ 155 (438)
.+|++.|||++||||||+++||+|++|+|||+||++||++||+|.+++++||||||+++|.+|+++.|+++++++++||+
T Consensus 79 ~~~~~~~p~~~~f~~dp~~~ytl~~~i~~wD~kR~~Wl~~~p~~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~ 158 (453)
T PLN03181 79 GVNLGYDPPDPTFYDDPDLSYSIEKPIKNWDEKRAEWLKLHPSFAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKV 158 (453)
T ss_pred ccccCCCCCCcccccCCCCceecCCCcCCHHHHHHHHHHhCCCCCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEeccccCCCCCCccchHHHHHHHHHhCCCCcEEEEEcCCeeeecCCCCCCccccCCCCccccCCCcccc
Q 045999 156 DYCRIHGYDIFYNNVLLNPKMNSFWAKLPVVKAAMLAHPEAEWIWWVDSDAAFTDMEFKLPLERYRNHNVVVHGWPKLIY 235 (438)
Q Consensus 156 ~YAr~HGY~l~~~~~~~~~~~~~~W~Kv~~LR~aM~~~P~aEWvwWLDaDAlImn~~~~Lple~~~d~nlvi~~~~~lv~ 235 (438)
+||++|||+++++++.++++++++|+|+++||++|.+||++|||||||+|||||||+++||+++|+++|+++||++++++
T Consensus 159 dYArrHGY~lf~~~a~Ld~~~p~~WaKipalRaAM~a~PeAEWfWWLDsDALIMNp~~sLPl~ry~~~NLvvhg~p~~vy 238 (453)
T PLN03181 159 DYCRIHGYDIFYNNALLHPKMNSYWAKLPVVRAAMLAHPEAEWIWWVDSDAVFTDMDFKLPLHRYRDHNLVVHGWPKLIY 238 (453)
T ss_pred HHHHHhCCcEEEeccccCccCchhhhHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhhcCCccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccceeeEEeCCHhHHHHHHHHHhhCCCCccccchhhhhhccccCCCCCCCchHHHHHHHHHhcCCcccccccc
Q 045999 236 EAKSWTSLNAGVFLIRNCQWSMDFMDTWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAALIYLLYTEKDKYYDNIYL 315 (438)
Q Consensus 236 ~tqD~~GLNtGsFLIRNs~WS~~fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL~~LL~~~~~~W~~kv~~ 315 (438)
.+|||+|||+|||||||||||++|||+|+.|||++|.|++||++|+++|+|++++|++|||||+|||.+++++|++|||+
T Consensus 239 ~~qdw~GlN~GsFLIRNcqWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~eaDDQsaLvyll~~~~~~w~~k~yl 318 (453)
T PLN03181 239 EKRSWTALNAGVFLIRNCQWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPESDDQSALVYLLYKHKEKWGDKIYL 318 (453)
T ss_pred ccccccccceeeeEEecCHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCCccchHHHHHHHHhccchhccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccchhccccchH--------------HHHhhhcchhhhhHHHHHHHHHh-hcCCCCCCCCCCceeeCCCCCCCC
Q 045999 316 EGEFYFEGYWLEIVPTVR--------------TLRRRHAEKVSESYAAQREQYLK-EAGNGRGSWRRPFITHFTGCQPCS 380 (438)
Q Consensus 316 e~~y~l~gyw~~iv~~~~--------------~lr~~~a~~~~~~~~~~~~~y~~-~~~~g~~~~r~dFVvHFaGC~~c~ 380 (438)
|++|||||||.+||++|+ .|||||||++++.|++.||+|++ .+|+|.|++||||||||+|||||+
T Consensus 319 E~~yy~~GyW~~iv~~~e~~~~~y~~~er~~~~lrrrhae~~~~~y~~~re~~~~~~~~~G~g~~R~PfvTHF~GC~pC~ 398 (453)
T PLN03181 319 EGEYYFEGYWAEIVGRLDNITERYLEMEREDATLRRRHAEKVSERYAAFREEALKGPAGGGKGSWRRPFVTHFTGCQPCS 398 (453)
T ss_pred ecceeeeeeHHHHHhHHHHHHHHHHHhhhcchhhhhhhhhhhhhhhhhhhhhhhccCCCCCCCCccCcccccccCccccC
Confidence 999999999999999973 58999999999999999999998 578899999999999999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHhhhhHHHHHHhCccCCCCCCCCCccccCCCCCCCC
Q 045999 381 GDHNQMYSGETCWSGMVKALNFADNQVLRKYGFVHPDLRDSSLVSPVPFDFPDDG 435 (438)
Q Consensus 381 ~~~~~~y~~~~C~~~M~ra~nfad~qvl~~yg~~h~~l~~~~~v~~~~f~~p~~~ 435 (438)
|.+|++|++++||++|+||||||||||||+|||+|++|++.+.|+|||||||++.
T Consensus 399 g~~n~~Y~~~~C~~~m~ra~nFaDnQvl~~yGf~h~~l~~~~~v~p~~fdypa~~ 453 (453)
T PLN03181 399 GDHNKMYSGDSCWNGMRRALNFADNQVLRAYGFVHADLLDSSTVQPLPFDYPAEA 453 (453)
T ss_pred CCCCCCCCHHHHHHHHHHHhccchHHHHHHhCcccccccCCCccccCCCCCCCCC
Confidence 9999999999999999999999999999999999999996568999999999963
No 2
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=100.00 E-value=2.8e-115 Score=884.01 Aligned_cols=382 Identities=45% Similarity=0.853 Sum_probs=335.0
Q ss_pred ccchhHhHhHHHHHHHHHHHh--hhccCCCCCCCCCCc-cccccc---cccCCCC--CCCCCCCCCCCCccccCCCCccc
Q 045999 26 LTDGFLFLGGAFFALLIVWSF--SSLLNSAPRFDSTPL-SEAKAT---SEARSPG--CAANLRYDPPDETFYDDQELSYS 97 (438)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~d~~~~y~ 97 (438)
++...+.+.++++.+|+|+|. ..|.+|.+.+.+.-. +.+... ...+... .+.+.........=|+||+++|+
T Consensus 18 ~~~~k~t~lc~~~tilvlrgt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 97 (429)
T PLN03182 18 LNNLKITILCGFVTILVLRGTIAGKFGTPEQDFVELRAHFLSARRIEEPSRVLAEIRFDDDLTDLDEVEEERWDPNTPYT 97 (429)
T ss_pred HhccchhhhhhhheeeEeccccccccCCCCcchhhhhhhhccccccccccccchhccccCccccccccchhhcCCCCCcc
Confidence 677778888999999999994 445555544311100 000000 0000000 01111111122446999999999
Q ss_pred cCCCCCChHHHHHHHhhcCCCCCCC--CCCcEEEEEccCCCCCCCCchHHHHHHHHHhHHHHHHHhCCcEEEeccccCCC
Q 045999 98 IEKKIEDWDEKRKRWLKLHPSFAAG--ARERVVLVTGSQPKPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNVLLNPK 175 (438)
Q Consensus 98 ~~~~~~~wd~~R~~wl~~~p~f~~~--~~prIvIVT~s~p~~~~~~~gd~~l~~ai~Nk~~YAr~HGY~l~~~~~~~~~~ 175 (438)
+||+|+|||+||++||++||.|++. ++|||+|||++++.+|+|+.|++|++++++||++||++|||+++++...++++
T Consensus 98 lg~~i~~wd~~R~~wl~~~p~~~~~~~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~ 177 (429)
T PLN03182 98 LGPKISDWDEQRRRWLRKNPGFPSFVNGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAE 177 (429)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCCCccCCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcC
Confidence 9999999999999999999999985 89999999999999999999999999999999999999999999987778889
Q ss_pred CCCccchHHHHHHHHHhCCCCcEEEEEcCCeeeecCCCCCCccccCCCCccccCCCcccccCCCCCcccceeeEEeCCHh
Q 045999 176 MNSFWAKLPVVKAAMLAHPEAEWIWWVDSDAAFTDMEFKLPLERYRNHNVVVHGWPKLIYEAKSWTSLNAGVFLIRNCQW 255 (438)
Q Consensus 176 ~~~~W~Kv~~LR~aM~~~P~aEWvwWLDaDAlImn~~~~Lple~~~d~nlvi~~~~~lv~~tqD~~GLNtGsFLIRNs~W 255 (438)
++++|+|+++||++|.+||++|||||||+|||||||+++||+++|+++|+|+||++++++.++||+|||+||||||||||
T Consensus 178 ~p~~WaKlpaLR~aM~~~PeaEWiWWLDsDALImNmsfelPlery~~~NlVihg~~~~l~~~kdW~GLNtGsFLIRNcqW 257 (429)
T PLN03182 178 MAGFWAKLPLLRKLMLAHPEVEWIWWMDSDALFTDMTFEIPLEKYEGYNLVIHGWDELVYDQKSWIGLNTGSFLIRNCQW 257 (429)
T ss_pred CCcchhHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhHcCCcCeeeccchhhheeccccCccceeeEEEEcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCccccchhhhhhccccCCCCCCCchHHHHHHHHHhcCCccccccccccceeeccchhccccchHHH
Q 045999 256 SMDFMDTWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAALIYLLYTEKDKYYDNIYLEGEFYFEGYWLEIVPTVRTL 335 (438)
Q Consensus 256 S~~fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL~~LL~~~~~~W~~kv~~e~~y~l~gyw~~iv~~~~~l 335 (438)
|++|||+|+.|||++|.|++||++|+++|++++.+|++|||||+|||.+++++|++|||+|++|||||||++||++||+
T Consensus 258 SldlLDaWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl~~~~~~w~~kv~le~~y~l~Gyw~~iv~~yee- 336 (429)
T PLN03182 258 SLDLLDAWAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLLLTQRERWGDKVYLENSYYLHGYWVGLVDRYEE- 336 (429)
T ss_pred HHHHHHHHHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHHHhcchhhccceEEeecceeccccHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred HhhhcchhhhhHHHHHHHHHhhcCCCCCCCCCCceeeCCCCCCCCCCCCCCCChhHHHHHHHHHHhhhhHHHHHHhCccC
Q 045999 336 RRRHAEKVSESYAAQREQYLKEAGNGRGSWRRPFITHFTGCQPCSGDHNQMYSGETCWSGMVKALNFADNQVLRKYGFVH 415 (438)
Q Consensus 336 r~~~a~~~~~~~~~~~~~y~~~~~~g~~~~r~dFVvHFaGC~~c~~~~~~~y~~~~C~~~M~ra~nfad~qvl~~yg~~h 415 (438)
++++|+ +|+|++||||||||+|||||+|.+ +|++++||++|+||||||||||||+|||+|
T Consensus 337 --------------~~~~~~----~g~gd~rwPfvtHF~GckpC~~~~--~y~~~~C~~~m~ra~nFaDnQvL~~yGf~H 396 (429)
T PLN03182 337 --------------MMEKYH----PGLGDDRWPFVTHFVGCKPCGGYG--DYPVERCLKQMERAFNFADNQVLELYGFRH 396 (429)
T ss_pred --------------HHHhcC----CCCCCcccceeEeeccceecCCCC--CcCHHHHHHHHHHHhccchHHHHHHhCccc
Confidence 445565 588999999999999999999986 599999999999999999999999999999
Q ss_pred CCCCCCCCccccCC
Q 045999 416 PDLRDSSLVSPVPF 429 (438)
Q Consensus 416 ~~l~~~~~v~~~~f 429 (438)
++|++. .|+++.=
T Consensus 397 ~~l~~~-~v~~~~~ 409 (429)
T PLN03182 397 KSLASA-EVKRVRN 409 (429)
T ss_pred cccCcc-ceeehhc
Confidence 999997 6887653
No 3
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.1e-61 Score=488.50 Aligned_cols=274 Identities=32% Similarity=0.585 Sum_probs=238.4
Q ss_pred CCccccCCCCccccCCCCCChHHHHHHHhhcCCCCCC---CCCCcEEEEEccCCCCCCCCchHHHHHHHHHhHHHHHHHh
Q 045999 85 DETFYDDQELSYSIEKKIEDWDEKRKRWLKLHPSFAA---GARERVVLVTGSQPKPCKNPIGDHLLLRFFKNKVDYCRIH 161 (438)
Q Consensus 85 ~~~~~~d~~~~y~~~~~~~~wd~~R~~wl~~~p~f~~---~~~prIvIVT~s~p~~~~~~~gd~~l~~ai~Nk~~YAr~H 161 (438)
+...+..++..|+.|+.|++|+++|+.|+.+||.++. +++.+|+|||+|++++|+|+.++++++++++||++||++|
T Consensus 59 ~p~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~~~~~~p~~~~IvlL~~S~~~~~~n~~~~~~~~~~ikNridYA~rH 138 (364)
T KOG4748|consen 59 EPSHVSVPELTYLDGPLITTWTTQRSVTLNVHPLFTSFPNPDSDRIVLLTGSDGGPCDNSPGNHYLLKSIKNRIDYARRH 138 (364)
T ss_pred CCccccccccceeccceeccccccceeEeecCccccccCCCCCCEEEEEEccCCCCCCCCcccHHHHHHHHhHHHHHHHh
Confidence 3557788999999999999999999999999997764 5889999999999999999999999999999999999999
Q ss_pred CCcEEEeccccCC---CCCCccchHHHHHHHHHhCCCCcEEEEEcCCeeeecCCCCCCccccCCCCccccCCCc------
Q 045999 162 GYDIFYNNVLLNP---KMNSFWAKLPVVKAAMLAHPEAEWIWWVDSDAAFTDMEFKLPLERYRNHNVVVHGWPK------ 232 (438)
Q Consensus 162 GY~l~~~~~~~~~---~~~~~W~Kv~~LR~aM~~~P~aEWvwWLDaDAlImn~~~~Lple~~~d~nlvi~~~~~------ 232 (438)
||+++++++..++ ++++.|+|+|+||++|++||+||||||||+||+|||++++||.++|++.+|+.|...+
T Consensus 139 gy~~~~~~~~~~~~~~e~~~~W~KiP~Ir~tM~kyP~AeWIWWlD~DAlimn~~lsL~~~ilk~~~L~~~l~~nd~~~~~ 218 (364)
T KOG4748|consen 139 GYEFEYKNATLDKRYHELPGVWAKLPAIRQTMLKYPDAEWIWWLDQDALIMNPDLSLQDHILKPENLVTHLLRNDQKSIN 218 (364)
T ss_pred CCeEEEEecccccccccccchhHHhHHHHHHHHHCCCCcEEEEecccchhhCcccchhHHhcCHHHHHHhhccccccccc
Confidence 9999999998887 8999999999999999999999999999999999999999999998887776543221
Q ss_pred --------------------ccccCCCCCcccceeeEEeCCHhHHHHHHHHHhhCCCCccccchhhhhhccccCCCCCCC
Q 045999 233 --------------------LIYEAKSWTSLNAGVFLIRNCQWSMDFMDTWANMGPIGADYAKWGQIQRSTFKDKIFPES 292 (438)
Q Consensus 233 --------------------lv~~tqD~~GLNtGsFLIRNs~WS~~fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~ 292 (438)
.++++||++|+|+|||||||++|+..|||+|++ |++.. ..+..
T Consensus 219 ~~n~~~~~~~~~~~d~~~~~~~ii~qD~nG~naGSfLirns~~~~~llD~w~d-----p~l~~------------~~~~~ 281 (364)
T KOG4748|consen 219 PLNIFRLRPRTPSLDDLEDIAFIIPQDCNGINAGSFLIRNSEWGRLLLDAWND-----PLLYE------------LLWGQ 281 (364)
T ss_pred cCCccccccccccccchhhhceecccCCCCccccceEEecCccchhHHHhccC-----HHHHh------------hccch
Confidence 023589999999999999999999999999996 66654 23567
Q ss_pred chHHHHHHHHHhcCCccccccccccceeeccchhccccchHHHHhhhcchhhhhHHHHHHHHHhhcCCCCCCCCCCceee
Q 045999 293 DDQAALIYLLYTEKDKYYDNIYLEGEFYFEGYWLEIVPTVRTLRRRHAEKVSESYAAQREQYLKEAGNGRGSWRRPFITH 372 (438)
Q Consensus 293 ~DQsAL~~LL~~~~~~W~~kv~~e~~y~l~gyw~~iv~~~~~lr~~~a~~~~~~~~~~~~~y~~~~~~g~~~~r~dFVvH 372 (438)
.||+|+.|+++.+ ++++|+|.-++ +|.+|+..++ ++++|+++||||||
T Consensus 282 ~Eq~al~~~~e~h-------------~~l~~~vgilp-----~r~ins~~~~--------------~~~~g~~egdlvvh 329 (364)
T KOG4748|consen 282 KEQDALGHFLENH-------------PQLHSHVGILP-----LRYINSYPNG--------------APGYGYEEGDLVVH 329 (364)
T ss_pred HHHHHHHHHHhhc-------------hhhhhheeecc-----HHHHhcCCCC--------------CCCCccccCCeEEE
Confidence 9999999998833 67777766654 4555542222 35788999999999
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHhhhhHHHHHHhCccCCC
Q 045999 373 FTGCQPCSGDHNQMYSGETCWSGMVKALNFADNQVLRKYGFVHPD 417 (438)
Q Consensus 373 FaGC~~c~~~~~~~y~~~~C~~~M~ra~nfad~qvl~~yg~~h~~ 417 (438)
||||.. .++|+++|+||++|+|+|++..|||-|.+
T Consensus 330 FaGC~~----------~~~C~~~~~~y~~~~~~~~~~~~~~~~~~ 364 (364)
T KOG4748|consen 330 FAGCYV----------RNRCLEEMEKYFNLIDNKQGKLYGFPHEK 364 (364)
T ss_pred eccccc----------HhHHHHHHHHHHHHHHHhhhhhhccccCC
Confidence 999953 67999999999999999999999999964
No 4
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=100.00 E-value=7e-52 Score=400.56 Aligned_cols=211 Identities=37% Similarity=0.689 Sum_probs=44.5
Q ss_pred CCcEEEEEccCCCCCCCCchHH-HHHHHHHhHHHHHHHhCCcEEEeccc--cCCCCCCccchHHHHHHHHHhCCCCcEEE
Q 045999 124 RERVVLVTGSQPKPCKNPIGDH-LLLRFFKNKVDYCRIHGYDIFYNNVL--LNPKMNSFWAKLPVVKAAMLAHPEAEWIW 200 (438)
Q Consensus 124 ~prIvIVT~s~p~~~~~~~gd~-~l~~ai~Nk~~YAr~HGY~l~~~~~~--~~~~~~~~W~Kv~~LR~aM~~~P~aEWvw 200 (438)
+|+|||||++++++|.++.|+. ++.++++||++||++|||++++++.. ..++++++|+|+++||++|++||++||||
T Consensus 2 ~~~vvivt~~d~~~~~~~~~~~~~~~~~~~Nr~~Ya~~HgY~~~~~~~~~~~~~~~~~~W~K~~~lr~~m~~~P~~~wv~ 81 (239)
T PF05637_consen 2 SPKVVIVTASDFESCDKPSGDWSYLKKSIQNRVDYARRHGYDLYYRNIQEYDDPERPGSWAKIPALRAAMKKYPEAEWVW 81 (239)
T ss_dssp -------------------------------HHHHHHHHT-EEEEE-S--S--SHHHHHHTHHHHHHHHHHH-TT-SEEE
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHhcCCEEEEEChHHcCCCCCChhhHHHHHHHHHHHhCCCCCEEE
Confidence 6899999999999999887775 99999999999999999999996643 33467889999999999999999999999
Q ss_pred EEcCCeeeecCCCCCCcccc----------CCCCcc-----------ccCCCcccccCCCCCcccceeeEEeCCHhHHHH
Q 045999 201 WVDSDAAFTDMEFKLPLERY----------RNHNVV-----------VHGWPKLIYEAKSWTSLNAGVFLIRNCQWSMDF 259 (438)
Q Consensus 201 WLDaDAlImn~~~~Lple~~----------~d~nlv-----------i~~~~~lv~~tqD~~GLNtGsFLIRNs~WS~~f 259 (438)
|||+||+||||+++|...++ ++.+++ +.+.+..++.+|||+|||+||||||||+||++|
T Consensus 82 ~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li~t~d~~gLNtGsFliRns~ws~~f 161 (239)
T PF05637_consen 82 WLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLIITQDWNGLNTGSFLIRNSPWSRDF 161 (239)
T ss_dssp EE-TTEEE------------------------------------------------------------------------
T ss_pred EEcCCeEEEecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999988754443 222222 122233344699999999999999999999999
Q ss_pred HHHHHhhCCCCccccchhhhhhccccCCCCCCCchHHHHHHHHHhcCCccccccccccceeeccchhccccchHHHHhhh
Q 045999 260 MDTWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAALIYLLYTEKDKYYDNIYLEGEFYFEGYWLEIVPTVRTLRRRH 339 (438)
Q Consensus 260 Ld~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL~~LL~~~~~~W~~kv~~e~~y~l~gyw~~iv~~~~~lr~~~ 339 (438)
||+|++ |.|..++ ...++++||+||+|||+.++..+...+ +.++..+|+|...
T Consensus 162 Ld~w~~-----~~~~~~~---------~~~~~~~EQsAl~~ll~~~~~~~~~~~-~vpq~~~nsy~~~------------ 214 (239)
T PF05637_consen 162 LDAWAD-----PLYRNYD---------WDQLEFDEQSALEHLLQWHPEILSKVA-LVPQRWFNSYPED------------ 214 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-----ccccccc---------ccccccccccccccccccccccccccc-ccccccccccccc------------
Confidence 999996 5666543 223457999999999998776555433 3334444443221
Q ss_pred cchhhhhHHHHHHHHHhhcCCCCCCCCCCceeeCCCCCCCC
Q 045999 340 AEKVSESYAAQREQYLKEAGNGRGSWRRPFITHFTGCQPCS 380 (438)
Q Consensus 340 a~~~~~~~~~~~~~y~~~~~~g~~~~r~dFVvHFaGC~~c~ 380 (438)
... ++.++|||||||+||+.|+
T Consensus 215 -----------~~~--------~~~~~GDfvvhfaGC~~~~ 236 (239)
T PF05637_consen 215 -----------ECN--------YQYKEGDFVVHFAGCKVCG 236 (239)
T ss_dssp -----------------------------------------
T ss_pred -----------ccc--------ccccccccccccccccccc
Confidence 111 2357899999999999974
No 5
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=99.59 E-value=1.2e-15 Score=145.13 Aligned_cols=137 Identities=21% Similarity=0.419 Sum_probs=99.0
Q ss_pred HHHHHHhCCcEEEeccccC--CCCCCccchHHHHHHHHHhCCCCcEEEEEcCCeeeecCCCCCCccccCCCCccccCCCc
Q 045999 155 VDYCRIHGYDIFYNNVLLN--PKMNSFWAKLPVVKAAMLAHPEAEWIWWVDSDAAFTDMEFKLPLERYRNHNVVVHGWPK 232 (438)
Q Consensus 155 ~~YAr~HGY~l~~~~~~~~--~~~~~~W~Kv~~LR~aM~~~P~aEWvwWLDaDAlImn~~~~Lple~~~d~nlvi~~~~~ 232 (438)
++||++|||++++...... ...+-+..+..++.+.| |+++||++||+|+.|+||+..|+.-+-.+.++++
T Consensus 2 ~CY~~~~~Y~~~l~~d~~~~C~~kd~fFrRHCvva~~L---~~~~~vlflDaDigVvNp~~~iEefid~~~Di~f----- 73 (222)
T PF03314_consen 2 RCYCKIHGYPFILAHDTDFKCDQKDKFFRRHCVVAKIL---PEYDWVLFLDADIGVVNPNRRIEEFIDEGYDIIF----- 73 (222)
T ss_pred eEEeeccCCeEEEEecCCCCCcchhHHHHHHHHHHHHh---ccCCEEEEEcCCceeecCcccHHHhcCCCCcEEE-----
Confidence 5899999999998764311 23555677788888888 8889999999999999998666422223345543
Q ss_pred ccccCCCC-CcccceeeEEeCCHhHHHHHHHHHhhCCCCccccchhhhhhccccCCCCCCCchHHHHHHHHHhcCCcccc
Q 045999 233 LIYEAKSW-TSLNAGVFLIRNCQWSMDFMDTWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAALIYLLYTEKDKYYD 311 (438)
Q Consensus 233 lv~~tqD~-~GLNtGsFLIRNs~WS~~fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL~~LL~~~~~~W~~ 311 (438)
| .+-. ..+++||||+||++||++||..|++|..+.| . .+.+.|+.||+.+|++. --|
T Consensus 74 --y-dR~~n~Ei~agsYlvkNT~~~~~fl~~~a~~E~~lP--------------~--sfhGtDNGAlH~~L~e~---l~P 131 (222)
T PF03314_consen 74 --Y-DRFFNWEIAAGSYLVKNTEYSRDFLKEWADYEFKLP--------------N--SFHGTDNGALHIFLAEK---LFP 131 (222)
T ss_pred --E-ecccchhhhhccceeeCCHHHHHHHHHHhhhCccCC--------------C--ccccCccHHHHHHHHHH---hCc
Confidence 2 2222 3799999999999999999999999533222 2 35689999999999843 344
Q ss_pred ccccccceee
Q 045999 312 NIYLEGEFYF 321 (438)
Q Consensus 312 kv~~e~~y~l 321 (438)
+...|.+-|.
T Consensus 132 ~~~~e~~~C~ 141 (222)
T PF03314_consen 132 ESSIEIDLCR 141 (222)
T ss_pred cccHHHHHHH
Confidence 4444545554
No 6
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=98.61 E-value=1.4e-08 Score=104.16 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=68.6
Q ss_pred CCCCCcccceeeEEeCCHhHHHHHHHHHhhCCCCccccchhhhhhcccc-CCCCCCCchHHHHHHHHHhcCCcccccc
Q 045999 237 AKSWTSLNAGVFLIRNCQWSMDFMDTWANMGPIGADYAKWGQIQRSTFK-DKIFPESDDQAALIYLLYTEKDKYYDNI 313 (438)
Q Consensus 237 tqD~~GLNtGsFLIRNs~WS~~fLd~W~~mgp~~P~y~~~g~~l~~~l~-d~~~~e~~DQsAL~~LL~~~~~~W~~kv 313 (438)
.+.|+++| +|.+|+++|+++.+++|.-|+|+|....+.|+.|.++.+ .+..++..+|.+|.+++..++++|.-++
T Consensus 214 ~~~~~~~n--~~~~~~~~~~~d~~~~~~~ii~qD~nG~naGSfLirns~~~~~llD~w~dp~l~~~~~~~~Eq~al~~ 289 (364)
T KOG4748|consen 214 QKSINPLN--IFRLRPRTPSLDDLEDIAFIIPQDCNGINAGSFLIRNSEWGRLLLDAWNDPLLYELLWGQKEQDALGH 289 (364)
T ss_pred ccccccCC--ccccccccccccchhhhceecccCCCCccccceEEecCccchhHHHhccCHHHHhhccchHHHHHHHH
Confidence 46788999 999999999999999999999999999999999999988 6778889999999999999998888654
No 7
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=97.73 E-value=0.00012 Score=68.69 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=79.2
Q ss_pred HHHHHHhCCcEEEeccc---cC--CC-------CCCccchHHHHHHHHHhCCCCcEEEEEcCCeeeecCCCCCCcccc--
Q 045999 155 VDYCRIHGYDIFYNNVL---LN--PK-------MNSFWAKLPVVKAAMLAHPEAEWIWWVDSDAAFTDMEFKLPLERY-- 220 (438)
Q Consensus 155 ~~YAr~HGY~l~~~~~~---~~--~~-------~~~~W~Kv~~LR~aM~~~P~aEWvwWLDaDAlImn~~~~Lple~~-- 220 (438)
.++|++.|...++.... .. .. ..-.|.|+.+++++|..- .=||++|+|+++... |.+.+
T Consensus 16 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G---~~vl~~D~Dvv~~~d----p~~~~~~ 88 (212)
T PF03407_consen 16 YDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELG---YDVLFSDADVVWLRD----PLPYFEN 88 (212)
T ss_pred HHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC---CceEEecCCEEEecC----cHHhhcc
Confidence 46788889986654332 10 00 123599999999988753 228999999998752 22222
Q ss_pred CCCCccccCC--CcccccCCCCCcccceeeEEeCCHhHHHHHHHHHhhCCCCccccchhhhhhccccCCCCCCCchHHHH
Q 045999 221 RNHNVVVHGW--PKLIYEAKSWTSLNAGVFLIRNCQWSMDFMDTWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAAL 298 (438)
Q Consensus 221 ~d~nlvi~~~--~~lv~~tqD~~GLNtGsFLIRNs~WS~~fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL 298 (438)
.+.++++... ..... .+....+|+|.|++|+++.++.||+.|.... .. . ....||.||
T Consensus 89 ~~~Di~~~~d~~~~~~~-~~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~------~~-----------~--~~~~DQ~~~ 148 (212)
T PF03407_consen 89 PDADILFSSDGWDGTNS-DRNGNLVNTGFYYFRPTPRTIAFLEDWLERM------AE-----------S--PGCWDQQAF 148 (212)
T ss_pred CCCceEEecCCCcccch-hhcCCccccceEEEecCHHHHHHHHHHHHHH------Hh-----------C--CCcchHHHH
Confidence 3444443210 00000 1122347999999999999999999999731 11 1 122599999
Q ss_pred HHHHHhcC
Q 045999 299 IYLLYTEK 306 (438)
Q Consensus 299 ~~LL~~~~ 306 (438)
..++....
T Consensus 149 n~~l~~~~ 156 (212)
T PF03407_consen 149 NELLREQA 156 (212)
T ss_pred HHHHHhcc
Confidence 99999653
No 8
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=96.72 E-value=0.0039 Score=58.29 Aligned_cols=108 Identities=15% Similarity=0.195 Sum_probs=59.6
Q ss_pred CCCccchHHHHHHHHHhC-CCCcEEEEEcCCeeeecCCCCCCcccc----CCCCcc-ccC-----------CCcccccCC
Q 045999 176 MNSFWAKLPVVKAAMLAH-PEAEWIWWVDSDAAFTDMEFKLPLERY----RNHNVV-VHG-----------WPKLIYEAK 238 (438)
Q Consensus 176 ~~~~W~Kv~~LR~aM~~~-P~aEWvwWLDaDAlImn~~~~Lple~~----~d~nlv-i~~-----------~~~lv~~tq 238 (438)
....|.+..+.|=.+... |++|.|+|||+|++|+.. |. +.+ .+..+. ... .........
T Consensus 78 ~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~d---l~-~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 153 (250)
T PF01501_consen 78 SKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGD---LD-ELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPG 153 (250)
T ss_dssp CCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS----SH-HHHC---TTSSEEEEE----HHHHTSTTSSEEECEST
T ss_pred ccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecC---hh-hhhcccchhhhccccccchhhhhhhcccchhhcccCc
Confidence 344555555555444443 899999999999999873 21 111 110010 000 000001123
Q ss_pred CCCcccceeeEEeCCHhHHHHHH-HHHhhCCCCccccchhhhhhccccCCCCCCCchHHHHHHHHH
Q 045999 239 SWTSLNAGVFLIRNCQWSMDFMD-TWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAALIYLLY 303 (438)
Q Consensus 239 D~~GLNtGsFLIRNs~WS~~fLd-~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL~~LL~ 303 (438)
.-.++|+|++++....|..+-+. .+..+ .+.. .......||+.|-.++.
T Consensus 154 ~~~~fNsGv~l~~~~~~~~~~~~~~~~~~------~~~~----------~~~~~~~DQ~~ln~~~~ 203 (250)
T PF01501_consen 154 NKPYFNSGVMLFNPSKWRKENILQKLIEW------LEQN----------GMKLGFPDQDILNIVFY 203 (250)
T ss_dssp TTTSEEEEEEEEEHHHHHHHHHHHHHHHH------HHHT----------TTT-SSCHHHHHHHHHT
T ss_pred ccccccCcEEEEeechhhhhhhhhhhhhh------hhhc----------ccccCcCchHHHhhhcc
Confidence 45689999999999999876444 44431 1111 11233689999999877
No 9
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=96.63 E-value=0.014 Score=56.52 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=50.8
Q ss_pred ccchHHHHHHHHHhCCCCcEEEEEcCCeeeecCCCCCCccccCCCCccccCCCcccccCCCC---CcccceeeEEeCCHh
Q 045999 179 FWAKLPVVKAAMLAHPEAEWIWWVDSDAAFTDMEFKLPLERYRNHNVVVHGWPKLIYEAKSW---TSLNAGVFLIRNCQW 255 (438)
Q Consensus 179 ~W~Kv~~LR~aM~~~P~aEWvwWLDaDAlImn~~~~Lple~~~d~nlvi~~~~~lv~~tqD~---~GLNtGsFLIRNs~W 255 (438)
.|.|+.+.. .+++|-|++||+|++|... |. +.+.-.+.+ ....|+ ..+|+|+++++.+..
T Consensus 78 ~~~kl~~~~-----l~~~drvlylD~D~~v~~~---i~-~Lf~~~~~~--------~a~~d~~~~~~fNsGv~l~~~~~~ 140 (240)
T cd02537 78 TYTKLRLWN-----LTEYDKVVFLDADTLVLRN---ID-ELFDLPGEF--------AAAPDCGWPDLFNSGVFVLKPSEE 140 (240)
T ss_pred HhHHHHhcc-----ccccceEEEEeCCeeEccC---HH-HHhCCCCce--------eeecccCccccccceEEEEcCCHH
Confidence 455544433 3568999999999999963 21 122210111 111122 479999999999754
Q ss_pred HHH-HHHHHHhhCCCCccccchhhhhhccccCCCCCCCchHHHHHHHHHh
Q 045999 256 SMD-FMDTWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAALIYLLYT 304 (438)
Q Consensus 256 S~~-fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL~~LL~~ 304 (438)
..+ +++.... .......||+.|..+++.
T Consensus 141 ~~~~~~~~~~~---------------------~~~~~~~DQdiLN~~~~~ 169 (240)
T cd02537 141 TFNDLLDALQD---------------------TPSFDGGDQGLLNSYFSD 169 (240)
T ss_pred HHHHHHHHHhc---------------------cCCCCCCCHHHHHHHHcC
Confidence 322 2222221 011235899999999873
No 10
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=96.56 E-value=0.032 Score=56.23 Aligned_cols=149 Identities=15% Similarity=0.193 Sum_probs=84.9
Q ss_pred CCCcEEEEEccCCCCCCCCchHHHHHHHHHhHHHHHHHhCCcEEEeccccCCCCCCccchHHHHHHHHHhCCCCcEEEEE
Q 045999 123 ARERVVLVTGSQPKPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNVLLNPKMNSFWAKLPVVKAAMLAHPEAEWIWWV 202 (438)
Q Consensus 123 ~~prIvIVT~s~p~~~~~~~gd~~l~~ai~Nk~~YAr~HGY~l~~~~~~~~~~~~~~W~Kv~~LR~aM~~~P~aEWvwWL 202 (438)
..++|+|||..-...-. +. ...+..-..+.||.+........+.....|... +.|-.+-+.+++|=|++|
T Consensus 29 ~~dlVvLvt~~~~~~~~----~~-----~~~~~~~l~~~~~~v~~v~~~~~~~~~~~~~~~-~tKl~~~~l~~y~kvlyL 98 (278)
T cd06914 29 KAKLVLLVPETLLDRNL----DD-----FVRRDLLLARDKVIVKLIPVIIASGGDAYWAKS-LTKLRAFNQTEYDRIIYF 98 (278)
T ss_pred CCCEEEEECCCCChhhh----hh-----HHHHHHHhhccCcEEEEcCcccCCCCCccHHHH-HHHHHhccccceeeEEEe
Confidence 57899999865433200 11 111111125667766655543333344567654 666666566789999999
Q ss_pred cCCeeeecCCCCCCccccC-CCCccccCCCcccccCCCCCcccceeeEEeCCHhHH-HHHHHHHhhCCCCccccchhhhh
Q 045999 203 DSDAAFTDMEFKLPLERYR-NHNVVVHGWPKLIYEAKSWTSLNAGVFLIRNCQWSM-DFMDTWANMGPIGADYAKWGQIQ 280 (438)
Q Consensus 203 DaDAlImn~~~~Lple~~~-d~nlvi~~~~~lv~~tqD~~GLNtGsFLIRNs~WS~-~fLd~W~~mgp~~P~y~~~g~~l 280 (438)
|+|+++.+. |. |.+. +....+ .......-+|+|+|+|.-+.|.. ++++...+. ..
T Consensus 99 DaD~l~~~~---id-eLf~~~~~~~~-------Aap~~~~~FNSGvmvi~ps~~~~~~l~~~~~~~-------~~----- 155 (278)
T cd06914 99 DSDSIIRHP---MD-ELFFLPNYIKF-------AAPRAYWKFASHLMVIKPSKEAFKELMTEILPA-------YL----- 155 (278)
T ss_pred cCChhhhcC---hH-HHhcCCcccce-------eeecCcceecceeEEEeCCHHHHHHHHHHHHHh-------cc-----
Confidence 999999973 21 2221 101111 01112237999999999999994 455544441 10
Q ss_pred hccccCCCCCCCchHHHHHHHHHhcCCcccc
Q 045999 281 RSTFKDKIFPESDDQAALIYLLYTEKDKYYD 311 (438)
Q Consensus 281 ~~~l~d~~~~e~~DQsAL~~LL~~~~~~W~~ 311 (438)
.+. ...||++|-.++........+
T Consensus 156 -----~~~--~~~DQdiLN~~~~~~~~~~~~ 179 (278)
T cd06914 156 -----NKK--NEYDMDLINEEFYNSKQLFKP 179 (278)
T ss_pred -----cCC--CCCChHHHHHHHhCCccccCc
Confidence 111 357999999999855333333
No 11
>PLN00176 galactinol synthase
Probab=96.11 E-value=0.19 Score=51.90 Aligned_cols=117 Identities=16% Similarity=0.172 Sum_probs=64.1
Q ss_pred CcccceeeEEeCCHhH-HHHHHHHHhhCCCCccccchhhhhhccccCCCCCCCchHHHHHHHHHhcCCccccccccccce
Q 045999 241 TSLNAGVFLIRNCQWS-MDFMDTWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAALIYLLYTEKDKYYDNIYLEGEF 319 (438)
Q Consensus 241 ~GLNtGsFLIRNs~WS-~~fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL~~LL~~~~~~W~~kv~~e~~y 319 (438)
..+|+|+|+|..+.|. .++++.... . ......||+.|..++.. +|.. |-..|
T Consensus 182 ~yFNSGVlvinps~~~~~~ll~~l~~-~--------------------~~~~f~DQD~LN~~F~~---~~~~---Lp~~Y 234 (333)
T PLN00176 182 LYFNAGMFVFEPSLSTYEDLLETLKI-T--------------------PPTPFAEQDFLNMFFRD---IYKP---IPPVY 234 (333)
T ss_pred CeEEeEEEEEEcCHHHHHHHHHHHHh-c--------------------CCCCCCCHHHHHHHHcC---cEEE---CCchh
Confidence 4699999999999999 455543322 0 01124899999999872 3432 33223
Q ss_pred eeccchhccccchHHHHhhhcchhhhhHHHHHHHHHhhcCCCCCCCCCCceeeCCC--CCCCCCCC-CCCCChhHHHHHH
Q 045999 320 YFEGYWLEIVPTVRTLRRRHAEKVSESYAAQREQYLKEAGNGRGSWRRPFITHFTG--CQPCSGDH-NQMYSGETCWSGM 396 (438)
Q Consensus 320 ~l~gyw~~iv~~~~~lr~~~a~~~~~~~~~~~~~y~~~~~~g~~~~r~dFVvHFaG--C~~c~~~~-~~~y~~~~C~~~M 396 (438)
-+.- .++.+|++. + +....=||||.| .||=.-.. ...-..++=-.-.
T Consensus 235 N~~~----------~~~~~~~~~-----------~---------~~~~vkIIHY~~~~~KPW~~~~~~~~~~~~~~~~~~ 284 (333)
T PLN00176 235 NLVL----------AMLWRHPEN-----------V---------ELDKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLV 284 (333)
T ss_pred cCch----------hhhhhChhh-----------c---------ccCCcEEEEeeCCCCCCCCCCCcccCCChHHHHHHH
Confidence 2211 233333210 1 123567999985 67731100 0001122223335
Q ss_pred HHHHhhhhHHHHHHhCcc
Q 045999 397 VKALNFADNQVLRKYGFV 414 (438)
Q Consensus 397 ~ra~nfad~qvl~~yg~~ 414 (438)
+++....++++|..-+..
T Consensus 285 ~~Ww~~~~~~~~~~~~~~ 302 (333)
T PLN00176 285 KKWWDIYNDESLDYKNFV 302 (333)
T ss_pred HHHHHHhccccccccccc
Confidence 678888999888765544
No 12
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=96.08 E-value=0.068 Score=51.37 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=61.1
Q ss_pred CCCccchHHHHHHHHH-hCCCCcEEEEEcCCeeeecCCCCCC-c-c-ccCCCCc--cccCCCcc-------cccCCCCCc
Q 045999 176 MNSFWAKLPVVKAAML-AHPEAEWIWWVDSDAAFTDMEFKLP-L-E-RYRNHNV--VVHGWPKL-------IYEAKSWTS 242 (438)
Q Consensus 176 ~~~~W~Kv~~LR~aM~-~~P~aEWvwWLDaDAlImn~~~~Lp-l-e-~~~d~nl--vi~~~~~l-------v~~tqD~~G 242 (438)
....|.+..+.|=.+- ..|++|.|.|||+|++|... |. + + .+.+..+ +....... .....+-..
T Consensus 75 ~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~d---i~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~y 151 (248)
T cd04194 75 TTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGD---LSELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSY 151 (248)
T ss_pred ccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCC---HHHHhcCCcCCCEEEEEecccHHHHHHHHhhcCCCcccce
Confidence 3456777766665553 35789999999999999873 21 0 0 0111111 11111000 001233457
Q ss_pred ccceeeEEeCCHhHH-HHHHHHHhhCCCCccccchhhhhhccccCCCCCCCchHHHHHHHHHh
Q 045999 243 LNAGVFLIRNCQWSM-DFMDTWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAALIYLLYT 304 (438)
Q Consensus 243 LNtGsFLIRNs~WS~-~fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL~~LL~~ 304 (438)
+|+|+|++.-+.|-. .+.+.+.++ .++. .......||++|-.++..
T Consensus 152 fNsGv~l~nl~~~r~~~~~~~~~~~------~~~~----------~~~~~~~DQd~LN~~~~~ 198 (248)
T cd04194 152 FNSGVLLINLKKWREENITEKLLEL------IKEY----------GGRLIYPDQDILNAVLKD 198 (248)
T ss_pred eeecchheeHHHHHHhhhHHHHHHH------HHhC----------CCceeeCChHHHHHHHhC
Confidence 999999998887764 333333331 1110 011335899999999874
No 13
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=93.67 E-value=0.3 Score=49.97 Aligned_cols=132 Identities=15% Similarity=0.247 Sum_probs=71.1
Q ss_pred HHHHHHHhCCcEEEeccccCCCCCCccch----HHHHHHHHH-hCCCCcEEEEEcCCeeeecCCCCCC--cccc---CCC
Q 045999 154 KVDYCRIHGYDIFYNNVLLNPKMNSFWAK----LPVVKAAML-AHPEAEWIWWVDSDAAFTDMEFKLP--LERY---RNH 223 (438)
Q Consensus 154 k~~YAr~HGY~l~~~~~~~~~~~~~~W~K----v~~LR~aM~-~~P~aEWvwWLDaDAlImn~~~~Lp--le~~---~d~ 223 (438)
...|..+.+|.++.+.. ...-...|.+ ..+.|=.+- -.|+.+=|++||+|+++... |. .+.+ .+.
T Consensus 52 ~~~~~~~i~~~i~~I~~--P~~~~~~ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~d---I~eL~~~~~df~~~ 126 (304)
T cd06430 52 PELIDRKFNYTLHPITF--PSGNAAEWKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRP---VEEIWSFLKKFNST 126 (304)
T ss_pred HHhccceeeeEEEEEec--CccchhhhhhcccHHHHHHHHHHHHhhhhceEEEeccceeecCC---HHHHHHHHhhcCCC
Confidence 34555667778776532 1111235665 343333221 24788999999999999974 21 1112 221
Q ss_pred Ccc--cc-------CCCcccccCC---CCCcccceeeEEeCCHhHHH------------HHHHHHhhCCCCccccchhhh
Q 045999 224 NVV--VH-------GWPKLIYEAK---SWTSLNAGVFLIRNCQWSMD------------FMDTWANMGPIGADYAKWGQI 279 (438)
Q Consensus 224 nlv--i~-------~~~~lv~~tq---D~~GLNtGsFLIRNs~WS~~------------fLd~W~~mgp~~P~y~~~g~~ 279 (438)
.+. .+ +|... .... ...|+|+||+|+-...|-.. +-+.|.++ .+++.
T Consensus 127 ~~aA~v~e~~~~~~~~~~~-~~~~~~~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~------~~~~~-- 197 (304)
T cd06430 127 QLAAMAPEHEEPNIGWYNR-FARHPYYGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPL------YKKYK-- 197 (304)
T ss_pred eEEEEEecccccchhhhhh-hcccCcccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHH------HHhcc--
Confidence 111 10 01100 0011 22479999999998888863 23334431 22221
Q ss_pred hhccccCCCCCCCchHHHHHHHHHhcCC
Q 045999 280 QRSTFKDKIFPESDDQAALIYLLYTEKD 307 (438)
Q Consensus 280 l~~~l~d~~~~e~~DQsAL~~LL~~~~~ 307 (438)
......||++|-.++..+++
T Consensus 198 --------~~l~~~DQDiLN~v~~~~p~ 217 (304)
T cd06430 198 --------LKITWGDQDLINIIFHHNPE 217 (304)
T ss_pred --------cCCCCCCHHHHHHHHcCCCC
Confidence 11235899999999986543
No 14
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=92.91 E-value=0.6 Score=45.12 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=58.9
Q ss_pred ccchHHHHHHHHH-hCCCCcEEEEEcCCeeeecCC---CCCCccccCCCCccc-c-CC--------CcccccCCCCCccc
Q 045999 179 FWAKLPVVKAAML-AHPEAEWIWWVDSDAAFTDME---FKLPLERYRNHNVVV-H-GW--------PKLIYEAKSWTSLN 244 (438)
Q Consensus 179 ~W~Kv~~LR~aM~-~~P~aEWvwWLDaDAlImn~~---~~Lple~~~d~nlvi-~-~~--------~~lv~~tqD~~GLN 244 (438)
.|.+..+.|=.+- -.|.++=|++||+|++|...= +++++ .+..+.. + .. ........+..++|
T Consensus 78 ~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l---~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfN 154 (246)
T cd00505 78 PIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPL---GGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFN 154 (246)
T ss_pred ccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccC---CCCeEEEccCchhhhccchhhcccCCCCCCCcee
Confidence 3444444443331 246789999999999998630 01111 1111110 0 00 00000123345899
Q ss_pred ceeeEEeCCHhH-HHHHHHHHhhCCCCccccchhhhhhccccCCCCCCCchHHHHHHHHHhc
Q 045999 245 AGVFLIRNCQWS-MDFMDTWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAALIYLLYTE 305 (438)
Q Consensus 245 tGsFLIRNs~WS-~~fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL~~LL~~~ 305 (438)
+|+++|....|- .++++..... +.+. .......||++|-.++...
T Consensus 155 sGVmlinl~~~r~~~~~~~~~~~------~~~~----------~~~~~~~DQd~LN~~~~~~ 200 (246)
T cd00505 155 SGVFVVNLSKERRNQLLKVALEK------WLQS----------LSSLSGGDQDLLNTFFKQV 200 (246)
T ss_pred eeeEEEechHHHHHHHHHHHHHH------HHhh----------cccCccCCcHHHHHHHhcC
Confidence 999999999994 6677665531 1110 0112358999999998744
No 15
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=91.11 E-value=0.99 Score=44.90 Aligned_cols=103 Identities=15% Similarity=0.286 Sum_probs=61.5
Q ss_pred CCCCccchHHHHHHHHH-hCCCCcEEEEEcCCeeeecCCCCCCccccCCCCccccCCCcccccCCCCCcccceeeEEeCC
Q 045999 175 KMNSFWAKLPVVKAAML-AHPEAEWIWWVDSDAAFTDMEFKLPLERYRNHNVVVHGWPKLIYEAKSWTSLNAGVFLIRNC 253 (438)
Q Consensus 175 ~~~~~W~Kv~~LR~aM~-~~P~aEWvwWLDaDAlImn~~~~Lple~~~d~nlvi~~~~~lv~~tqD~~GLNtGsFLIRNs 253 (438)
..+..|++..+.|=.+- -.|+.+=+++||+|+++..- | ..+-+.++. + ..+..-.| ++|+||++|-..
T Consensus 92 ~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~d---l--~eL~~~dl~--~--~~~aav~d--yfNsGV~linl~ 160 (257)
T cd06429 92 RKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKD---L--TELWNTDLG--G--GVAGAVET--SWNPGVNVVNLT 160 (257)
T ss_pred CCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCC---H--HHHhhCCCC--C--CEEEEEhh--hcccceEEEeHH
Confidence 35567999988887764 35788999999999999862 3 111111221 0 01111223 799999999887
Q ss_pred HhHHHHH----HHHHhhCCCCccccchhhhhhccccCCCCCCCchHHHHHHHHH
Q 045999 254 QWSMDFM----DTWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAALIYLLY 303 (438)
Q Consensus 254 ~WS~~fL----d~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL~~LL~ 303 (438)
.|-+.=+ ..|... ... .....+..+||++|-.++.
T Consensus 161 ~wr~~~i~~~~~~~~~~------~~~---------~~~~~~~~~dqd~ln~~~~ 199 (257)
T cd06429 161 EWRRQNVTETYEKWMEL------NQE---------EEVTLWKLITLPPGLIVFY 199 (257)
T ss_pred HHHhccHHHHHHHHHHH------hhh---------cccchhhcCCccHHHHHcc
Confidence 7764322 224321 100 0012355689999987765
No 16
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=89.50 E-value=4.2 Score=40.92 Aligned_cols=134 Identities=15% Similarity=0.202 Sum_probs=66.2
Q ss_pred HHHhCCcEEEeccc--cCC---CCCCccchH-HHHHHHHH-hCC-CCcEEEEEcCCeeeecCCCCCCccc---cCCCCcc
Q 045999 158 CRIHGYDIFYNNVL--LNP---KMNSFWAKL-PVVKAAML-AHP-EAEWIWWVDSDAAFTDMEFKLPLER---YRNHNVV 226 (438)
Q Consensus 158 Ar~HGY~l~~~~~~--~~~---~~~~~W~Kv-~~LR~aM~-~~P-~aEWvwWLDaDAlImn~~~~Lple~---~~d~nlv 226 (438)
+..++..+.+.... ... .....|+.. .+.|=.+- ..| +++=|++||+|++|.+.=..| .+. +.+..+.
T Consensus 52 ~~~~~~~i~f~~i~~~~~~~~~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL-~~~~~~~~~~~~~ 130 (280)
T cd06431 52 WMVPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAEL-WKIFHKFTGQQVL 130 (280)
T ss_pred ccccCcEEEEEEhHHhhhhhccCcccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHH-HHHhhhcCCCcEE
Confidence 34556666655432 111 112356554 33444332 357 689999999999999741111 112 2222211
Q ss_pred --ccCCC-----cccccCCC----CCcccceeeEEeCCHhHHH-HHHHHHhhCCCCccccchhhhhhccccCCCCCCCch
Q 045999 227 --VHGWP-----KLIYEAKS----WTSLNAGVFLIRNCQWSMD-FMDTWANMGPIGADYAKWGQIQRSTFKDKIFPESDD 294 (438)
Q Consensus 227 --i~~~~-----~lv~~tqD----~~GLNtGsFLIRNs~WS~~-fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~D 294 (438)
+.... ...-..+. -.++|+||++|-...|-+. +.+.|..+ -+++ +.........|
T Consensus 131 a~v~~~~~~~~~~~~~~~~~~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~------~~~~-------~~~~~~~~~~D 197 (280)
T cd06431 131 GLVENQSDWYLGNLWKNHRPWPALGRGFNTGVILLDLDKLRKMKWESMWRLT------AERE-------LMSMLSTSLAD 197 (280)
T ss_pred EEeccchhhhhhhhhhccCCCcccccceeeeeeeeeHHHHHhhCHHHHHHHH------HHHH-------HhhcCCCCcCc
Confidence 00000 00000111 1379999999988877644 33333321 0111 00011133589
Q ss_pred HHHHHHHHHhc
Q 045999 295 QAALIYLLYTE 305 (438)
Q Consensus 295 QsAL~~LL~~~ 305 (438)
|++|-.++..+
T Consensus 198 QDiLN~v~~~~ 208 (280)
T cd06431 198 QDIFNAVIKQN 208 (280)
T ss_pred HHHHHHHHcCC
Confidence 99999999754
No 17
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=85.16 E-value=2.7 Score=43.53 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=62.7
Q ss_pred CCccchHHHHHHHHH-hCCCCcEEEEEcCCeeeecC---CCCCCcccc-----CCCCccccCCCc---ccccCCCC-Ccc
Q 045999 177 NSFWAKLPVVKAAML-AHPEAEWIWWVDSDAAFTDM---EFKLPLERY-----RNHNVVVHGWPK---LIYEAKSW-TSL 243 (438)
Q Consensus 177 ~~~W~Kv~~LR~aM~-~~P~aEWvwWLDaDAlImn~---~~~Lple~~-----~d~nlvi~~~~~---lv~~tqD~-~GL 243 (438)
..-|++..+.|=.+- -+|+.+=+.|+|+|+++.+- .+.++++.+ ++. ..+-+.+ ..-..... +.+
T Consensus 78 ~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~--~~~~~~~~~~~~~~~~~~~~yF 155 (325)
T COG1442 78 TKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDV--FSHYMKEGALRLEKGDLEGSYF 155 (325)
T ss_pred ccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeeh--hhhhhhhhhhHhhhcccccccC
Confidence 356777666665553 47888999999999999972 122222210 010 0000000 00001222 359
Q ss_pred cceeeEEeCCHhHHHHHHHHHhhCCCCccccchhhhhhccccCCCCCCCchHHHHHHHHHh
Q 045999 244 NAGVFLIRNCQWSMDFMDTWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAALIYLLYT 304 (438)
Q Consensus 244 NtGsFLIRNs~WS~~fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL~~LL~~ 304 (438)
|+|+.++=+-.|-.+-+..-+=. . ..+. + -...+.||++|..+++.
T Consensus 156 NaG~llinl~~W~~~~i~~k~i~----~-~~~~---------~-~~~~~~DQdiLN~i~~~ 201 (325)
T COG1442 156 NAGVLLINLKLWREENIFEKLIE----L-LKDK---------E-NDLLYPDQDILNMIFED 201 (325)
T ss_pred ccceeeehHHHHHHhhhHHHHHH----H-Hhcc---------c-cccCCccccHHHHHHHh
Confidence 99999999999987766653310 0 0010 1 12346889999999883
No 18
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=78.64 E-value=1.1 Score=45.11 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCCcEEEEEcCCeeeecCC
Q 045999 185 VVKAAMLAHPEAEWIWWVDSDAAFTDME 212 (438)
Q Consensus 185 ~LR~aM~~~P~aEWvwWLDaDAlImn~~ 212 (438)
+|-++|. |..+||+|+|+|.+.+.++
T Consensus 134 LL~~aL~--p~~swVlWlDaDIv~~P~~ 159 (269)
T PF03452_consen 134 LLSSALG--PWHSWVLWLDADIVETPPT 159 (269)
T ss_pred HHHhhcC--CcccEEEEEecCcccCChH
Confidence 3444443 7889999999999976654
No 19
>PLN02718 Probable galacturonosyltransferase
Probab=78.07 E-value=8.4 Score=43.01 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=27.8
Q ss_pred CCccchHHHHHHHHH-hCCCCcEEEEEcCCeeeec
Q 045999 177 NSFWAKLPVVKAAML-AHPEAEWIWWVDSDAAFTD 210 (438)
Q Consensus 177 ~~~W~Kv~~LR~aM~-~~P~aEWvwWLDaDAlImn 210 (438)
+..|+...+.|=.|- -+|+.+=|++||+|+|+..
T Consensus 398 ~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~ 432 (603)
T PLN02718 398 PRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQR 432 (603)
T ss_pred cccccHHHHHHHHHHHHhcccCEEEEEECCEEecC
Confidence 457888888777663 4688999999999999986
No 20
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=77.09 E-value=11 Score=38.75 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=69.7
Q ss_pred HHHHHHhCCcEEEecc--c-cCC-CCCCccchHHHHHHHHH-hCC-CCcEEEEEcCCeeeecCCCCCC-cc--ccCCCCc
Q 045999 155 VDYCRIHGYDIFYNNV--L-LNP-KMNSFWAKLPVVKAAML-AHP-EAEWIWWVDSDAAFTDMEFKLP-LE--RYRNHNV 225 (438)
Q Consensus 155 ~~YAr~HGY~l~~~~~--~-~~~-~~~~~W~Kv~~LR~aM~-~~P-~aEWvwWLDaDAlImn~~~~Lp-le--~~~d~nl 225 (438)
...+..+|-.+.+... . +.. .....|++..+.|=.+- -.| +++=|++||+|+|+... |. +- .+.+..+
T Consensus 74 ~~l~~~~~~~i~~~~id~~~~~~~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~d---l~~L~~~dl~~~~~ 150 (334)
T PRK15171 74 SALAKQYNTRINIYLINCERLKSLPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGS---IKELIDLDFAENEI 150 (334)
T ss_pred HHHHHhcCCeEEEEEeCHHHHhCCcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCC---HHHHHhccCCCCeE
Confidence 3556666665554332 1 111 12456998888875543 246 59999999999999873 21 00 0111111
Q ss_pred --ccc-CCC--------cccccCCCCCcccceeeEEeCCHhHHH-HHHHHHhhCCCCccccchhhhhhccccCCCCCCCc
Q 045999 226 --VVH-GWP--------KLIYEAKSWTSLNAGVFLIRNCQWSMD-FMDTWANMGPIGADYAKWGQIQRSTFKDKIFPESD 293 (438)
Q Consensus 226 --vi~-~~~--------~lv~~tqD~~GLNtGsFLIRNs~WS~~-fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~ 293 (438)
++. +.. .+.....+...+|+||++|-...|-.. +-+.+.++-. ++ + +.. .....
T Consensus 151 aav~~d~~~~~~~~~~~~l~~~~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~-~~--~---------~~~--~~~~~ 216 (334)
T PRK15171 151 AAVVAEGDAEWWSKRAQSLQTPGLASGYFNSGFLLINIPAWAQENISAKAIEMLA-DP--E---------IVS--RITHL 216 (334)
T ss_pred EEEEeccchhHHHHHHHhcCCccccccceecceEEEcHHHHHHhhHHHHHHHHHh-cc--c---------ccc--ceeec
Confidence 111 100 010001122469999999999988754 3333433100 00 0 001 12347
Q ss_pred hHHHHHHHHH
Q 045999 294 DQAALIYLLY 303 (438)
Q Consensus 294 DQsAL~~LL~ 303 (438)
||++|-.++.
T Consensus 217 DQDiLN~~~~ 226 (334)
T PRK15171 217 DQDVLNILLA 226 (334)
T ss_pred ChhHHHHHHc
Confidence 9999999987
No 21
>PLN02769 Probable galacturonosyltransferase
Probab=70.05 E-value=15 Score=41.37 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=46.0
Q ss_pred CCCccchHHHHHHHHH-hCCCCcEEEEEcCCeeeecCCCCCC-c-c-ccCCC-Ccccc-------CCC----cccccCCC
Q 045999 176 MNSFWAKLPVVKAAML-AHPEAEWIWWVDSDAAFTDMEFKLP-L-E-RYRNH-NVVVH-------GWP----KLIYEAKS 239 (438)
Q Consensus 176 ~~~~W~Kv~~LR~aM~-~~P~aEWvwWLDaDAlImn~~~~Lp-l-e-~~~d~-nlvi~-------~~~----~lv~~tqD 239 (438)
.+..++-...+|=.|- -+|+.+=|++||+|+||..- |. + + .+.+. ...+. ... ..-+..+.
T Consensus 431 ~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgD---LseLw~iDL~gkviAAVedc~~rl~~~~~yl~~~~F~~~~ 507 (629)
T PLN02769 431 RTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRD---LSFLWNLDMGGKVNGAVQFCGVRLGQLKNYLGDTNFDTNS 507 (629)
T ss_pred CcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCc---HHHHhcCCCCCCeEEEehhhhhhhhhhhhhhcccCCCccc
Confidence 4456666666665442 35889999999999999863 21 0 0 01111 00010 000 01111222
Q ss_pred CCcccceeeEEeCCHhHHHHHH
Q 045999 240 WTSLNAGVFLIRNCQWSMDFMD 261 (438)
Q Consensus 240 ~~GLNtGsFLIRNs~WS~~fLd 261 (438)
.++|+|+++|=...|-+.=+.
T Consensus 508 -CyFNSGVLLINL~~WRk~nIT 528 (629)
T PLN02769 508 -CAWMSGLNVIDLDKWRELDVT 528 (629)
T ss_pred -cccccCeeEeeHHHHHHhCHH
Confidence 378999999999888876433
No 22
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=58.59 E-value=20 Score=32.94 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHhCCCCcEEEEEcCCeeeecCC
Q 045999 180 WAKLPVVKAAMLAHPEAEWIWWVDSDAAFTDME 212 (438)
Q Consensus 180 W~Kv~~LR~aM~~~P~aEWvwWLDaDAlImn~~ 212 (438)
..|...+..++.+- +.|||+++|+|+++ +++
T Consensus 72 ~~k~~a~n~~~~~~-~~d~i~~lD~D~~~-~p~ 102 (228)
T PF13641_consen 72 GGKARALNEALAAA-RGDYILFLDDDTVL-DPD 102 (228)
T ss_dssp HHHHHHHHHHHHH----SEEEEE-SSEEE--CH
T ss_pred chHHHHHHHHHHhc-CCCEEEEECCCcEE-CHH
Confidence 46777888888754 58999999999998 553
No 23
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=53.39 E-value=49 Score=31.59 Aligned_cols=76 Identities=18% Similarity=0.083 Sum_probs=41.3
Q ss_pred EEEEccCCCCCCCCchHHHHHHHHHhHH--HHHH-------HhCCcEEEeccc-cCCCCCCccchHHHHHHHHH--hCCC
Q 045999 128 VLVTGSQPKPCKNPIGDHLLLRFFKNKV--DYCR-------IHGYDIFYNNVL-LNPKMNSFWAKLPVVKAAML--AHPE 195 (438)
Q Consensus 128 vIVT~s~p~~~~~~~gd~~l~~ai~Nk~--~YAr-------~HGY~l~~~~~~-~~~~~~~~W~Kv~~LR~aM~--~~P~ 195 (438)
+||++.+.. ..++.+.+++-. +|-. .+.+++++.... .+.......+...+++.+.. +..+
T Consensus 1 v~ip~yNE~-------~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d~~~gk~~~~~~~~~~~~~~~~~a~ 73 (244)
T cd04190 1 VCVTMYNED-------EEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIKKNRGKRDSQLWFFNYFCRVLFPDD 73 (244)
T ss_pred CEEeeecCC-------HHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCcccccCcchHHHHHHHHHHHHHhhcCC
Confidence 355665554 245666666643 3432 357888875543 22222222222223333222 2357
Q ss_pred CcEEEEEcCCeeeec
Q 045999 196 AEWIWWVDSDAAFTD 210 (438)
Q Consensus 196 aEWvwWLDaDAlImn 210 (438)
.|+|..+|+|+++-.
T Consensus 74 ~e~i~~~DaD~~~~~ 88 (244)
T cd04190 74 PEFILLVDADTKFDP 88 (244)
T ss_pred CCEEEEECCCCcCCH
Confidence 899999999999954
No 24
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=50.13 E-value=2.9e+02 Score=28.23 Aligned_cols=27 Identities=37% Similarity=0.462 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhCCCCcEEEEEcCCeeee
Q 045999 182 KLPVVKAAMLAHPEAEWIWWVDSDAAFT 209 (438)
Q Consensus 182 Kv~~LR~aM~~~P~aEWvwWLDaDAlIm 209 (438)
|-.+++..+.. .+.|||+++|+|....
T Consensus 150 ~~~A~~~Gi~~-a~gd~I~~~DaD~~~~ 176 (333)
T PTZ00260 150 KGGAVRIGMLA-SRGKYILMVDADGATD 176 (333)
T ss_pred hHHHHHHHHHH-ccCCEEEEEeCCCCCC
Confidence 55677777754 4679999999997543
No 25
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=48.57 E-value=1.3e+02 Score=29.51 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhC-CCCcEEEEEcCCeeee
Q 045999 182 KLPVVKAAMLAH-PEAEWIWWVDSDAAFT 209 (438)
Q Consensus 182 Kv~~LR~aM~~~-P~aEWvwWLDaDAlIm 209 (438)
|...|+.++... .+.|+|..||+|.++.
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~ 109 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLMS 109 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCCC
Confidence 899999988753 5789999999999875
No 26
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=46.11 E-value=85 Score=26.56 Aligned_cols=31 Identities=3% Similarity=0.042 Sum_probs=22.9
Q ss_pred ccchHHHHHHHHHhCCCCcEEEEEcCCeeeec
Q 045999 179 FWAKLPVVKAAMLAHPEAEWIWWVDSDAAFTD 210 (438)
Q Consensus 179 ~W~Kv~~LR~aM~~~P~aEWvwWLDaDAlImn 210 (438)
...+..++..++..- +.+|++++|+|..+..
T Consensus 59 ~~g~~~a~n~~~~~~-~~~~i~~~D~D~~~~~ 89 (166)
T cd04186 59 NLGFGAGNNQGIREA-KGDYVLLLNPDTVVEP 89 (166)
T ss_pred CcChHHHhhHHHhhC-CCCEEEEECCCcEECc
Confidence 445566667666644 7899999999998753
No 27
>PLN02742 Probable galacturonosyltransferase
Probab=45.75 E-value=1.3e+02 Score=33.37 Aligned_cols=85 Identities=11% Similarity=0.152 Sum_probs=49.7
Q ss_pred CCccchHHHHHHHHH-hCCCCcEEEEEcCCeeeecC-----CCCCCcccc---CCCCcccc------CCCc----ccccC
Q 045999 177 NSFWAKLPVVKAAML-AHPEAEWIWWVDSDAAFTDM-----EFKLPLERY---RNHNVVVH------GWPK----LIYEA 237 (438)
Q Consensus 177 ~~~W~Kv~~LR~aM~-~~P~aEWvwWLDaDAlImn~-----~~~Lple~~---~d~nlvi~------~~~~----lv~~t 237 (438)
+..|+-..++|=.|- .+|+.+=|++||+|+||..- +..|.-... .+-....+ ++.+ ..+..
T Consensus 333 p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~ 412 (534)
T PLN02742 333 PKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDP 412 (534)
T ss_pred cccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchhhhhhhhhhhhcccchhhhccCCC
Confidence 677888888887664 46889999999999999862 111110000 00000000 0110 11223
Q ss_pred CCCCcccceeeEEeCCHhHHHHHHH
Q 045999 238 KSWTSLNAGVFLIRNCQWSMDFMDT 262 (438)
Q Consensus 238 qD~~GLNtGsFLIRNs~WS~~fLd~ 262 (438)
+.-++|+|+++|=-..|-+.-+..
T Consensus 413 -~aC~fNsGV~ViDL~~WRe~nITe 436 (534)
T PLN02742 413 -DACGWAFGMNVFDLVAWRKANVTA 436 (534)
T ss_pred -CccccccCcEEEeHHHHHhhcHHH
Confidence 334799999999999998654443
No 28
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=43.25 E-value=1.6e+02 Score=27.23 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHHHHhCCcEEEeccccCCCCCCccchHHHHHHHHHhC-CCCcEEEEEcCCeeee
Q 045999 156 DYCRIHGYDIFYNNVLLNPKMNSFWAKLPVVKAAMLAH-PEAEWIWWVDSDAAFT 209 (438)
Q Consensus 156 ~YAr~HGY~l~~~~~~~~~~~~~~W~Kv~~LR~aM~~~-P~aEWvwWLDaDAlIm 209 (438)
+++++++..+.+.... ...+. |..++..++... .+.|||+++|+|+++.
T Consensus 49 ~~~~~~~~~i~~i~~~---~~~G~--~~~a~n~g~~~a~~~~d~i~~lD~D~~~~ 98 (236)
T cd06435 49 AHCAQLGERFRFFHVE---PLPGA--KAGALNYALERTAPDAEIIAVIDADYQVE 98 (236)
T ss_pred HHHHHhCCcEEEEEcC---CCCCC--chHHHHHHHHhcCCCCCEEEEEcCCCCcC
Confidence 4555555555443221 12232 555666666543 3579999999998654
No 29
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=42.93 E-value=57 Score=36.88 Aligned_cols=80 Identities=15% Similarity=0.312 Sum_probs=43.6
Q ss_pred hHHHHHHHHH-hCCCCcEEEEEcCCeeeecCC---CCCCccccCCC-Ccccc-------------CCC--cc--cccCCC
Q 045999 182 KLPVVKAAML-AHPEAEWIWWVDSDAAFTDME---FKLPLERYRNH-NVVVH-------------GWP--KL--IYEAKS 239 (438)
Q Consensus 182 Kv~~LR~aM~-~~P~aEWvwWLDaDAlImn~~---~~Lple~~~d~-nlvi~-------------~~~--~l--v~~tqD 239 (438)
-.-++|=.|- -+|+++=|++||+|+|+.+.= +++++ .+. ..++. ++. .+ -+.+ +
T Consensus 460 ~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL---~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs-~ 535 (657)
T PLN02910 460 MLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDM---QGMVNGAVETCKESFHRFDKYLNFSNPKISENFDP-N 535 (657)
T ss_pred HHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHhCCc---CCceEEEecccchhhhhhhhhhccCChhhhhccCC-C
Confidence 3334444332 357889999999999998731 00111 111 00000 010 00 1222 3
Q ss_pred CCcccceeeEEeCCHhHH----HHHHHHHh
Q 045999 240 WTSLNAGVFLIRNCQWSM----DFMDTWAN 265 (438)
Q Consensus 240 ~~GLNtGsFLIRNs~WS~----~fLd~W~~ 265 (438)
.-++|+|+++|=-..|-+ +.++.|..
T Consensus 536 aCyfNsGVmVIDL~~WRe~nITe~ye~w~e 565 (657)
T PLN02910 536 ACGWAFGMNMFDLKEWRKRNITGIYHYWQD 565 (657)
T ss_pred CceeecccEEEeHHHHHHhhHHHHHHHHHH
Confidence 347899999999999984 35555655
No 30
>TIGR03758 conj_TIGR03758 integrating conjugative element protein, PFL_4701 family. Members of this family of small, hydrophobic proteins are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.11 E-value=19 Score=29.16 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=19.0
Q ss_pred chhHhHhHHHHHHHHHHHhhhccC
Q 045999 28 DGFLFLGGAFFALLIVWSFSSLLN 51 (438)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~ 51 (438)
.-.+++.|.++++|+||+.|.+.+
T Consensus 18 ~l~~l~lG~~~~vllLW~aWal~~ 41 (65)
T TIGR03758 18 AMNTLILGLVLAVLFLWGAWALLT 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566799999999999997654
No 31
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=40.56 E-value=43 Score=27.19 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCeeeecCC
Q 045999 183 LPVVKAAMLAHPEAEWIWWVDSDAAFTDME 212 (438)
Q Consensus 183 v~~LR~aM~~~P~aEWvwWLDaDAlImn~~ 212 (438)
..++.++...+.+++|++++|+|=++..+.
T Consensus 59 ~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 59 RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 334444444556899999999999998765
No 32
>PRK11204 N-glycosyltransferase; Provisional
Probab=37.33 E-value=1.2e+02 Score=31.26 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=22.8
Q ss_pred chHHHHHHHHHhCCCCcEEEEEcCCeeee
Q 045999 181 AKLPVVKAAMLAHPEAEWIWWVDSDAAFT 209 (438)
Q Consensus 181 ~Kv~~LR~aM~~~P~aEWvwWLDaDAlIm 209 (438)
.|..++..++.. .+.|+|+.+|+|+++.
T Consensus 121 Gka~aln~g~~~-a~~d~i~~lDaD~~~~ 148 (420)
T PRK11204 121 GKANALNTGAAA-ARSEYLVCIDGDALLD 148 (420)
T ss_pred CHHHHHHHHHHH-cCCCEEEEECCCCCCC
Confidence 388888888764 5789999999999763
No 33
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=36.11 E-value=59 Score=31.31 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=42.2
Q ss_pred EEEEEccCCCCCCCCchHHHHHHHHHhHHHHHHHhCCcEEEeccccCCCCCCccchHHHHHHHHHhCCCCcEEEEEcCCe
Q 045999 127 VVLVTGSQPKPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNVLLNPKMNSFWAKLPVVKAAMLAHPEAEWIWWVDSDA 206 (438)
Q Consensus 127 IvIVT~s~p~~~~~~~gd~~l~~ai~Nk~~YAr~HGY~l~~~~~~~~~~~~~~W~Kv~~LR~aM~~~P~aEWvwWLDaDA 206 (438)
|.||+.++.+ .++.+.++|-...----|+.+.+.+ .++.++--.+..++|.+ .+++++++|..|+
T Consensus 1 isiI~c~n~~--------~~~~~~~~~i~~~~~~~~~~i~i~~------~~~~~s~~~~yN~a~~~-a~~~ylvflHqDv 65 (217)
T PF13712_consen 1 ISIIICVNDE--------ELYEECLRSIKRLIGPPGELIEIDN------VRNAKSMAAAYNEAMEK-AKAKYLVFLHQDV 65 (217)
T ss_dssp EEEEEEES-H--------HHHHHHHHHHHHTT--TEEEEEEE-------SSS-S-TTTHHHHHGGG---SSEEEEEETTE
T ss_pred CEEEEEECCH--------HHHHHHHHHHHhhCCCCceEEEEec------cCCCcCHHHHHHHHHHh-CCCCEEEEEeCCe
Confidence 5677776544 5566677776655444455544432 22335555677888876 6889999999999
Q ss_pred eeecCC
Q 045999 207 AFTDME 212 (438)
Q Consensus 207 lImn~~ 212 (438)
.|.+.+
T Consensus 66 ~i~~~~ 71 (217)
T PF13712_consen 66 FIINEN 71 (217)
T ss_dssp E-SSHH
T ss_pred EEcchh
Confidence 999853
No 34
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=35.09 E-value=1.7e+02 Score=29.58 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhCCCCcEEEEEcCCeeeecC
Q 045999 182 KLPVVKAAMLAHPEAEWIWWVDSDAAFTDM 211 (438)
Q Consensus 182 Kv~~LR~aM~~~P~aEWvwWLDaDAlImn~ 211 (438)
|-.++.+.+.. .+.|||.++|+|....++
T Consensus 103 kg~A~~~g~~~-a~gd~vv~lDaD~~~~~p 131 (306)
T PRK13915 103 KGEALWRSLAA-TTGDIVVFVDADLINFDP 131 (306)
T ss_pred HHHHHHHHHHh-cCCCEEEEEeCccccCCH
Confidence 45566665543 468999999999985444
No 35
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=34.39 E-value=2e+02 Score=26.10 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=21.1
Q ss_pred CccchHHHHHHHHHhCCCCcEEEEEcCCeee
Q 045999 178 SFWAKLPVVKAAMLAHPEAEWIWWVDSDAAF 208 (438)
Q Consensus 178 ~~W~Kv~~LR~aM~~~P~aEWvwWLDaDAlI 208 (438)
+.-.|...+..++. +.+.|||+++|+|+++
T Consensus 70 g~~~~~~~~n~g~~-~a~~d~i~~~D~D~~~ 99 (196)
T cd02520 70 GINPKVNNLIKGYE-EARYDILVISDSDISV 99 (196)
T ss_pred CCCHhHHHHHHHHH-hCCCCEEEEECCCceE
Confidence 33356666655554 3578999999999876
No 36
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=34.14 E-value=46 Score=34.37 Aligned_cols=49 Identities=27% Similarity=0.429 Sum_probs=33.5
Q ss_pred cccceeeEEeCCH-hHHHHHHHHHhhCCCCccccchhhhhhccccCCCCCCCchHHHHHHHHHhcCCccc
Q 045999 242 SLNAGVFLIRNCQ-WSMDFMDTWANMGPIGADYAKWGQIQRSTFKDKIFPESDDQAALIYLLYTEKDKYY 310 (438)
Q Consensus 242 GLNtGsFLIRNs~-WS~~fLd~W~~mgp~~P~y~~~g~~l~~~l~d~~~~e~~DQsAL~~LL~~~~~~W~ 310 (438)
+|--|.+|||.+. -+..|...||. .++. +...||=+|.|++-+.+.+|+
T Consensus 238 ~v~E~~iIiR~H~~~~nlf~clWfn------Ev~r--------------fs~RDQLSF~Yv~wk~~~~~~ 287 (305)
T PF04765_consen 238 DVPEGNIIIRKHNPMSNLFMCLWFN------EVER--------------FSPRDQLSFPYVLWKLGPKFK 287 (305)
T ss_pred CCccceEEEecCCchhHHHHHHHHH------HHhc--------------CCCcccchHHHHHHHhCCccc
Confidence 4456788999765 34456778997 2333 345899999999876655444
No 37
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=33.56 E-value=50 Score=30.62 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=26.0
Q ss_pred CCCccchHHHHHHHHHhCCCCcEEEEEcCCeeee
Q 045999 176 MNSFWAKLPVVKAAMLAHPEAEWIWWVDSDAAFT 209 (438)
Q Consensus 176 ~~~~W~Kv~~LR~aM~~~P~aEWvwWLDaDAlIm 209 (438)
..+.=-|+.-|.+++.+..++++|+++|+|+.+.
T Consensus 12 ~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~ 45 (175)
T PF13506_consen 12 PRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVP 45 (175)
T ss_pred CCCCChHHHHHHHHHHhhCCCCEEEEECCCeeEC
Confidence 3344558877877776646889999999999875
No 38
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=32.46 E-value=2.6e+02 Score=27.49 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.5
Q ss_pred CC-CCcEEEEEcCCeeeecC
Q 045999 193 HP-EAEWIWWVDSDAAFTDM 211 (438)
Q Consensus 193 ~P-~aEWvwWLDaDAlImn~ 211 (438)
.| ++|=|++||+|+++.+.
T Consensus 92 LP~~vdkvLYLD~Dilv~~d 111 (248)
T cd06432 92 FPLNVDKVIFVDADQIVRTD 111 (248)
T ss_pred hhhccCEEEEEcCCceeccc
Confidence 47 58999999999999974
No 39
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=30.44 E-value=2.8e+02 Score=26.16 Aligned_cols=52 Identities=21% Similarity=0.207 Sum_probs=36.0
Q ss_pred HHHhhcCCCCCCCCCCcEEEEEccCCCCCCCC-chHHHHHHHHHhHHHHHHHhCCcEEEe
Q 045999 110 KRWLKLHPSFAAGARERVVLVTGSQPKPCKNP-IGDHLLLRFFKNKVDYCRIHGYDIFYN 168 (438)
Q Consensus 110 ~~wl~~~p~f~~~~~prIvIVT~s~p~~~~~~-~gd~~l~~ai~Nk~~YAr~HGY~l~~~ 168 (438)
++|+..|| ..++-+|..-|++.++. .-......+++.-..-....|+.+...
T Consensus 18 ~~ll~~~~-------~~Lvs~tlniPGpvK~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~ 70 (165)
T TIGR03124 18 QELLKKYP-------LTLLSLTLNIPGPIKNNELLRRVFDIGIKAIEALLAKNGWTILVQ 70 (165)
T ss_pred HHHHHhCC-------CeEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeee
Confidence 45666654 24555899999999864 334556666777777788888887654
No 40
>PLN02829 Probable galacturonosyltransferase
Probab=29.35 E-value=95 Score=35.15 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=30.2
Q ss_pred CCCCccchHHHHHHHHH-hCCCCcEEEEEcCCeeeec
Q 045999 175 KMNSFWAKLPVVKAAML-AHPEAEWIWWVDSDAAFTD 210 (438)
Q Consensus 175 ~~~~~W~Kv~~LR~aM~-~~P~aEWvwWLDaDAlImn 210 (438)
..+..|+...+.|=.|- -+|+++=|++||+|+|+.+
T Consensus 435 r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqg 471 (639)
T PLN02829 435 RNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQK 471 (639)
T ss_pred CCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCC
Confidence 34778999988887663 4688999999999999987
No 41
>PLN03153 hypothetical protein; Provisional
Probab=27.42 E-value=54 Score=36.34 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=19.0
Q ss_pred HHHHHHh-CCCCcEEEEEcCCeeee
Q 045999 186 VKAAMLA-HPEAEWIWWVDSDAAFT 209 (438)
Q Consensus 186 LR~aM~~-~P~aEWvwWLDaDAlIm 209 (438)
+.+++.. .|+++|+.++|.||+|.
T Consensus 200 v~et~~~~~pd~kWfVf~DDDTyf~ 224 (537)
T PLN03153 200 VLESFRLGLPDVRWFVLGDDDTIFN 224 (537)
T ss_pred HHHHHHhhCCCCCEEEEecCCcccc
Confidence 3444443 79999999999999996
No 42
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=26.91 E-value=1.5e+02 Score=27.13 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCeeee
Q 045999 184 PVVKAAMLAHPEAEWIWWVDSDAAFT 209 (438)
Q Consensus 184 ~~LR~aM~~~P~aEWvwWLDaDAlIm 209 (438)
.++..++.. .+.|||++||+|.++.
T Consensus 71 ~a~N~g~~~-a~~d~v~~lD~D~~~~ 95 (249)
T cd02525 71 AGLNIGIRN-SRGDIIIRVDAHAVYP 95 (249)
T ss_pred HHHHHHHHH-hCCCEEEEECCCccCC
Confidence 345555543 3689999999999763
No 43
>PF11660 DUF3262: Protein of unknown function (DUF3262); InterPro: IPR021676 This entry represents small, hydrophobic proteins that are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.81 E-value=56 Score=26.84 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=19.5
Q ss_pred cchhHhHhHHHHHHHHHHHhhhccC
Q 045999 27 TDGFLFLGGAFFALLIVWSFSSLLN 51 (438)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (438)
+.-.+.+.|++++++++|+.|-..+
T Consensus 18 ~~l~~li~g~~~avllLW~aWa~~~ 42 (76)
T PF11660_consen 18 SQLSLLILGILFAVLLLWAAWALWS 42 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677799999999999997553
No 44
>PF01539 HCV_env: Hepatitis C virus envelope glycoprotein E1; InterPro: IPR002519 Poliovirus infection leads to drastic alterations in membrane permeability late during infection. Proteins 2B and 2BC enhance membrane permeability [, ].; GO: 0019031 viral envelope; PDB: 2KNU_A.
Probab=26.22 E-value=22 Score=34.20 Aligned_cols=34 Identities=29% Similarity=0.682 Sum_probs=0.0
Q ss_pred CCCCceeeCCCCCCCCCCCCCCCChhHHHHHHHHHHhh
Q 045999 365 WRRPFITHFTGCQPCSGDHNQMYSGETCWSGMVKALNF 402 (438)
Q Consensus 365 ~r~dFVvHFaGC~~c~~~~~~~y~~~~C~~~M~ra~nf 402 (438)
+--|.|.|-.||-||....| .-+||-...-.+--
T Consensus 23 ea~~~iLH~PGCVPCvr~~N----~srCW~pvtPtlAv 56 (190)
T PF01539_consen 23 EAEDAILHLPGCVPCVREGN----TSRCWVPVTPTLAV 56 (190)
T ss_dssp --------------------------------------
T ss_pred EecceEeecCCceeEEeeCC----ceeeEEecCcceee
Confidence 34689999999999987654 57999877655443
No 45
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=23.15 E-value=4.1e+02 Score=24.50 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhCCCCcEEEEEcCCeeee
Q 045999 182 KLPVVKAAMLAHPEAEWIWWVDSDAAFT 209 (438)
Q Consensus 182 Kv~~LR~aM~~~P~aEWvwWLDaDAlIm 209 (438)
|..++...+.. .+.|||+++|+|+++.
T Consensus 75 k~~a~n~g~~~-a~~~~i~~~DaD~~~~ 101 (232)
T cd06437 75 KAGALAEGMKV-AKGEYVAIFDADFVPP 101 (232)
T ss_pred chHHHHHHHHh-CCCCEEEEEcCCCCCC
Confidence 66666666653 5789999999999863
No 46
>PRK10063 putative glycosyl transferase; Provisional
Probab=21.93 E-value=5e+02 Score=25.15 Aligned_cols=28 Identities=7% Similarity=0.261 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhCCCCcEEEEEcCCeeeec
Q 045999 182 KLPVVKAAMLAHPEAEWIWWVDSDAAFTD 210 (438)
Q Consensus 182 Kv~~LR~aM~~~P~aEWvwWLDaDAlImn 210 (438)
.-.++...+.. -..|||++||+|.++..
T Consensus 70 ~~~A~N~Gi~~-a~g~~v~~ld~DD~~~~ 97 (248)
T PRK10063 70 IYDAMNKGIAM-AQGRFALFLNSGDIFHQ 97 (248)
T ss_pred HHHHHHHHHHH-cCCCEEEEEeCCcccCc
Confidence 33566666653 35699999999988854
No 47
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=21.21 E-value=1.5e+02 Score=24.41 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=23.9
Q ss_pred HHHHHHhHHHHHHHh---CCcEEEeccccCCC
Q 045999 147 LLRFFKNKVDYCRIH---GYDIFYNNVLLNPK 175 (438)
Q Consensus 147 l~~ai~Nk~~YAr~H---GY~l~~~~~~~~~~ 175 (438)
-.++++|-+.+|+.| .|++.+++..-+|+
T Consensus 15 S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~ 46 (72)
T cd02978 15 SERALQNLKRILEELLGGPYELEVIDVLKQPQ 46 (72)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh
Confidence 468899999999998 78888888776664
No 48
>cd04860 AE_Prim_S AE_Prim_S: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In addition to its catalytic role in replication, DNA primase may play a role in coupling replication to DNA damage repair and in checkpoint control during S phase. In eukaryotes, this small catalytically active primase subunit (p50) and a larger primase subunit (p60), referred to jointly as the core primase, associate with the B subunit and the DNA polymerase alpha subunit in a complex, called Pol alpha-pri. The function of the larger primase subunit is unclear. Included in this group are Pfu41 and Pfu46, these two proteins comprise the primase complex of the archaea Pyrococcus furiosus; Pfu41 and Pfu46 have sequence identity to the eukaryotic p50 and p60 primase proteins respectively. Pfu41 preferentially uses dNTPs as substrate. Pfu46 regulat
Probab=20.78 E-value=1.2e+02 Score=30.08 Aligned_cols=42 Identities=21% Similarity=0.551 Sum_probs=31.2
Q ss_pred eeCCCCCCCCCCCCCCCChhHHHHHHHHHHhhhhHHHHHHhCccC
Q 045999 371 THFTGCQPCSGDHNQMYSGETCWSGMVKALNFADNQVLRKYGFVH 415 (438)
Q Consensus 371 vHFaGC~~c~~~~~~~y~~~~C~~~M~ra~nfad~qvl~~yg~~h 415 (438)
+|..+|..|-.. .---..||+.|..|...-+..+-+-+||.|
T Consensus 87 ~d~d~~r~cc~~---~~ic~kCw~~~~~a~~~l~~~L~~dFGf~~ 128 (232)
T cd04860 87 DDYDDVRTCCSG---ATICEKCWKFAKEAVKILDDILREDFGFKH 128 (232)
T ss_pred CcCCCccccccc---ccHHHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 678887776332 123468999999999999766666699998
No 49
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=20.60 E-value=4.1e+02 Score=26.02 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=28.8
Q ss_pred CCCcEEEEEccCCCCCCCCchHHHHHHHHHhHHHHHHHhCCcEEEecc
Q 045999 123 ARERVVLVTGSQPKPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNV 170 (438)
Q Consensus 123 ~~prIvIVT~s~p~~~~~~~gd~~l~~ai~Nk~~YAr~HGY~l~~~~~ 170 (438)
...||++|.||.... ++-.+..+--...+..+|.++.+.+.
T Consensus 25 ~~~kI~~I~GSlR~~-------S~n~~la~~~~~~~~~~g~~v~~idl 65 (219)
T TIGR02690 25 HIPRILLLYGSLRER-------SYSRLLAEEAARLLGCEGRETRIFDP 65 (219)
T ss_pred CCCEEEEEECCCCCc-------chHHHHHHHHHHHHhhcCCEEEEeCc
Confidence 457999999987663 44455555556667777999887764
No 50
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=20.12 E-value=7.6e+02 Score=26.77 Aligned_cols=95 Identities=20% Similarity=0.166 Sum_probs=53.7
Q ss_pred ChHHHHHHHhhcCCCCC---CCCCCcEEEEEccCCCCCCCCchHHHHHHHHHhHHHHHHHhCCcEEEeccccCCCCCCcc
Q 045999 104 DWDEKRKRWLKLHPSFA---AGARERVVLVTGSQPKPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNVLLNPKMNSFW 180 (438)
Q Consensus 104 ~wd~~R~~wl~~~p~f~---~~~~prIvIVT~s~p~~~~~~~gd~~l~~ai~Nk~~YAr~HGY~l~~~~~~~~~~~~~~W 180 (438)
.=++-|+.|........ ...+-+|..|.|....+ +..+.+.+ ..=++.|| |+.+.+ ..+ ....-=
T Consensus 154 RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~------~~~ldr~L---e~Ea~~yg-DIL~lD-fvD-sY~NLT 221 (408)
T PLN03193 154 RRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATS------GGILDRAI---EAEDRKHG-DFLRLD-HVE-GYLELS 221 (408)
T ss_pred HHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCc------chHHHHHH---HHHHHHhC-CEEEEe-ccc-ccccch
Confidence 34677889987543221 12344666667754432 12233333 34567888 766544 222 222222
Q ss_pred chHHHHHHHHHhCCCCcEEEEEcCCeeeec
Q 045999 181 AKLPVVKAAMLAHPEAEWIWWVDSDAAFTD 210 (438)
Q Consensus 181 ~Kv~~LR~aM~~~P~aEWvwWLDaDAlImn 210 (438)
.|.-+.-+...+++++++++=.|.|+.|.=
T Consensus 222 ~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv 251 (408)
T PLN03193 222 AKTKTYFATAVAMWDADFYVKVDDDVHVNI 251 (408)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCceEcH
Confidence 354444444456789999999999998853
Done!